Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>029270
MTVSAPTPVAQVHTIECNSFLSSKLKPRSNRLFPAKNVSTIVAMASRKKVNKYDANWEKQ
WFGAGIFCEGSEEVEVDMFKKLEQRKVLSNVEKAGLLSKAEELGVTLSSIEKLGLFSKAE
ELGLLSLLEKLASASPSTLASASLPIFLAAVAAVVVIPDDSVTLVVVQAVLAAALGVGAA
GLFVGSVVLGGLQEAD

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029270
        (196 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2027257 - symbol:AT1G74730 "AT1G74730" species...   338  1.1e-30   1
TAIR|locus:2142848 - symbol:AT5G08050 "AT5G08050" species...   106  4.3e-06   1


>TAIR|locus:2027257 [details] [associations]
            symbol:AT1G74730 "AT1G74730" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009535 "chloroplast thylakoid membrane"
            evidence=IDA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
            [GO:0030003 "cellular cation homeostasis" evidence=RCA] [GO:0070838
            "divalent metal ion transport" evidence=RCA] EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0009535 UniGene:At.45891
            UniGene:At.48374 EMBL:AF386985 EMBL:BT002152 IPI:IPI00531082
            RefSeq:NP_565091.1 ProteinModelPortal:Q94F10 STRING:Q94F10
            PaxDb:Q94F10 PRIDE:Q94F10 EnsemblPlants:AT1G74730.1 GeneID:843812
            KEGG:ath:AT1G74730 TAIR:At1g74730 eggNOG:NOG254936
            HOGENOM:HOG000238002 InParanoid:Q94F10 OMA:APQKKVN PhylomeDB:Q94F10
            ProtClustDB:CLSN2689202 ArrayExpress:Q94F10 Genevestigator:Q94F10
            InterPro:IPR009500 Pfam:PF06549 Uniprot:Q94F10
        Length = 198

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 73/119 (61%), Positives = 92/119 (77%)

Query:     3 VSAP--TPVAQVHTIECNSFLSSKLKPRSNRLFPA-KNVST--IVAMASRKKVNKYDANW 57
             V AP  +P AQ+ T     FLS+ + PR  R F   K+ +T  +VAMA +KKVNKYDA W
Sbjct:     4 VGAPISSPAAQLQT----QFLSNPILPRFRRSFSTGKSPATFSVVAMAPQKKVNKYDAKW 59

Query:    58 EKQWFGAGIFCEGSEEVEVDMFKKLEQRKVLSNVEKAGLLSKAEELGVTLSSIEKLGLF 116
             +KQW+GAG+F EGSE++ VD+FKKLE+RKVLSNVEK+GLLSKAE LG+TLSS+EKL +F
Sbjct:    60 KKQWYGAGLFFEGSEQINVDVFKKLEKRKVLSNVEKSGLLSKAEGLGLTLSSLEKLKVF 118


>TAIR|locus:2142848 [details] [associations]
            symbol:AT5G08050 "AT5G08050" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009535 "chloroplast thylakoid
            membrane" evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA]
            [GO:0009534 "chloroplast thylakoid" evidence=IDA] [GO:0080167
            "response to karrikin" evidence=IEP] [GO:0009658 "chloroplast
            organization" evidence=IMP] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=IMP] [GO:0006098
            "pentose-phosphate shunt" evidence=RCA] [GO:0009773 "photosynthetic
            electron transport in photosystem I" evidence=RCA] [GO:0015995
            "chlorophyll biosynthetic process" evidence=RCA] [GO:0019684
            "photosynthesis, light reaction" evidence=RCA] EMBL:CP002688
            GO:GO:0045893 GO:GO:0080167 GO:GO:0009658 GO:GO:0009535
            EMBL:AL133421 InterPro:IPR009500 Pfam:PF06549 IPI:IPI00543446
            PIR:T45630 RefSeq:NP_196422.1 UniGene:At.638 STRING:Q9SD79
            PRIDE:Q9SD79 EnsemblPlants:AT5G08050.1 GeneID:830699
            KEGG:ath:AT5G08050 TAIR:At5g08050 InParanoid:Q9SD79 OMA:VPEDYPW
            PhylomeDB:Q9SD79 ProtClustDB:CLSN2687257 Genevestigator:Q9SD79
            InterPro:IPR016801 PIRSF:PIRSF022207 Uniprot:Q9SD79
        Length = 158

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 22/41 (53%), Positives = 32/41 (78%)

Query:    75 EVDMFKKLEQRKVLSNVEKAGLLSKAEELGVTLSSIEKLGL 115
             +V +  ++EQ K+L+  EKAGLLS AE+ G +LS+IE+LGL
Sbjct:    39 QVKLLTRVEQLKLLTKAEKAGLLSLAEKSGFSLSTIERLGL 79


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.130   0.365    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      196       128   0.00091  102 3  11 23  0.42    31
                                                     29  0.41    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  581 (62 KB)
  Total size of DFA:  128 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.00u 0.12s 13.12t   Elapsed:  00:00:00
  Total cpu time:  13.00u 0.12s 13.12t   Elapsed:  00:00:00
  Start:  Fri May 10 12:46:21 2013   End:  Fri May 10 12:46:21 2013

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