BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029270
         (196 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q46J19|HISX_PROMT Histidinol dehydrogenase OS=Prochlorococcus marinus (strain NATL2A)
           GN=hisD PE=3 SV=1
          Length = 449

 Score = 32.7 bits (73), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 17/115 (14%)

Query: 79  FKKLEQRKVLSNVEKAGLLSKAEELGVTLSSIEKLGLFSKAEELGLLSLLEKLASASPST 138
            +K    +V  N+   G     E LG   S +EK G++                +A PST
Sbjct: 111 IEKFHSLQVPKNITYTG--PNGETLGRRWSPVEKAGIYVPGGR-----------AAYPST 157

Query: 139 LASASLPIFLAAVAAVVVIPDDSVTLVVVQAVLAAALGVGAAGLFVGSVVLGGLQ 193
           +   ++P ++A V  ++++   +    + Q VLAAA   G   +F     LGG Q
Sbjct: 158 VLMNAIPAYVAGVNQIIMVSPANSQGEINQTVLAAAHITGINKIF----RLGGAQ 208


>sp|Q5UPL0|YL137_MIMIV Uncharacterized protein L137 OS=Acanthamoeba polyphaga mimivirus
           GN=MIMI_L137 PE=3 SV=1
          Length = 732

 Score = 30.4 bits (67), Expect = 7.1,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%)

Query: 49  KVNKYDANWEKQWFGAGIFCEGSEEVEVDMFKKLEQRKVLSNVEKAGLLSKAEELGVTLS 108
           K+   +  W++         E S ++ +D++++L   K    V K  ++S   +LG+  S
Sbjct: 231 KLKNVNTMWKRSQSSKFQLYENSSDLRLDIYQELNDTKETIIVRKLKVISSGFDLGLDQS 290

Query: 109 SIEKLGLFSKA 119
            IE  G+F  A
Sbjct: 291 GIEYNGIFYPA 301


>sp|Q9ZMZ0|RF1_HELPJ Peptide chain release factor 1 OS=Helicobacter pylori (strain J99)
           GN=prfA PE=3 SV=1
          Length = 352

 Score = 30.4 bits (67), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 51/120 (42%), Gaps = 11/120 (9%)

Query: 87  VLSNVEKAGLLSKAEELGVTLSSIEKLGLFSKAEELGLLSLL----EKLASASPSTLASA 142
           +LS+VE    + K  EL    SSIE++ + SK E L +L  +    E L     S LA  
Sbjct: 21  LLSSVEVVSDIKKLTELSKEQSSIEEISVASK-EYLSVLEGIKENKELLEDKELSELAKE 79

Query: 143 SLPIF------LAAVAAVVVIPDDSVTLVVVQAVLAAALGVGAAGLFVGSVVLGGLQEAD 196
            L I       L      ++IP D      +   L A  G   AG+FVG +     + AD
Sbjct: 80  ELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYAD 139


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.129    0.349 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,102,562
Number of Sequences: 539616
Number of extensions: 2328403
Number of successful extensions: 9386
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 9376
Number of HSP's gapped (non-prelim): 38
length of query: 196
length of database: 191,569,459
effective HSP length: 111
effective length of query: 85
effective length of database: 131,672,083
effective search space: 11192127055
effective search space used: 11192127055
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)