Query 029270
Match_columns 196
No_of_seqs 59 out of 61
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 16:37:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029270.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029270hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lim_A Fragaceatoxin C; pore f 29.9 28 0.00096 29.0 2.4 31 51-82 105-135 (178)
2 2ba3_A NIKA; dimer, bacterial 26.6 24 0.00083 22.1 1.2 23 88-110 22-44 (51)
3 3cta_A Riboflavin kinase; stru 24.3 35 0.0012 26.8 2.0 39 72-110 6-44 (230)
4 1b0n_B Protein (SINI protein); 23.7 26 0.0009 24.0 1.0 30 91-120 13-42 (57)
5 3iz6_S 40S ribosomal protein S 22.8 31 0.0011 27.7 1.4 70 22-93 22-121 (146)
6 1qgp_A Protein (double strande 18.4 1E+02 0.0035 20.9 3.2 29 97-127 35-63 (77)
7 1qbj_A Protein (double-strande 17.9 1.1E+02 0.0038 21.3 3.3 29 97-127 31-59 (81)
8 2heo_A Z-DNA binding protein 1 16.5 69 0.0024 21.0 1.8 29 96-126 28-56 (67)
9 2xvc_A ESCRT-III, SSO0910; cel 15.3 49 0.0017 23.3 0.9 19 71-89 38-56 (59)
10 2lkp_A Transcriptional regulat 14.1 1.3E+02 0.0044 20.7 2.8 42 83-126 33-76 (119)
No 1
>3lim_A Fragaceatoxin C; pore forming toxin, actinoporins; HET: LDA; 1.80A {Actinia fragacea} PDB: 3zwj_A 3zwg_A 1kd6_A 1iaz_A 1tzq_A
Probab=29.86 E-value=28 Score=28.99 Aligned_cols=31 Identities=23% Similarity=0.638 Sum_probs=22.8
Q ss_pred ccccccccceeeecccccCCCcchhhhHHHhh
Q 029270 51 NKYDANWEKQWFGAGIFCEGSEEVEVDMFKKL 82 (196)
Q Consensus 51 n~~d~~w~k~~fg~G~f~e~se~~~~~ll~~~ 82 (196)
..||-|+-+.||++|++.-+.+.++ ++++++
T Consensus 105 VPyDyNlYsNW~~Vgv~~~~~~~d~-~~y~~M 135 (178)
T 3lim_A 105 VPYDYNWYSNWWNVRVYKGQKRADQ-RMYEEL 135 (178)
T ss_dssp ECSCTTTCCCEEEEEEESSCCCCCH-HHHHHH
T ss_pred cCcchhhhhheeEEEEecCcccccH-HHHHHH
Confidence 5699999999999999966644433 455554
No 2
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=26.62 E-value=24 Score=22.08 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=16.6
Q ss_pred hhhHhhhchhhHHHHcCCchhhh
Q 029270 88 LSNVEKAGLLSKAEELGVTLSSI 110 (196)
Q Consensus 88 LS~~e~~GLLskaE~~GlSLS~i 110 (196)
||..|..-|-.+|+..|+|+|..
T Consensus 22 lt~eE~~~l~~~A~~~g~s~Sey 44 (51)
T 2ba3_A 22 FSPVEDETIRKKAEDSGLTVSAY 44 (51)
T ss_dssp ECHHHHHHHHHHHHHHTCCHHHH
T ss_pred ECHHHHHHHHHHHHHhCCCHHHH
Confidence 46666666777888888887764
No 3
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=24.33 E-value=35 Score=26.76 Aligned_cols=39 Identities=21% Similarity=0.171 Sum_probs=23.6
Q ss_pred cchhhhHHHhhHhhhhhhhHhhhchhhHHHHcCCchhhh
Q 029270 72 EEVEVDMFKKLEQRKVLSNVEKAGLLSKAEELGVTLSSI 110 (196)
Q Consensus 72 e~~~~~ll~~~e~~klLS~~e~~GLLskaE~~GlSLS~i 110 (196)
.+..+++|..+.+.+-+...+...+=..|++.|+|-+.+
T Consensus 6 ~~~~l~~l~~l~~~~~l~~~~~~s~s~aA~~L~isq~av 44 (230)
T 3cta_A 6 DDQYYRAIKKIKEAAEASNRAYLTSSKLADMLGISQQSA 44 (230)
T ss_dssp -CHHHHHHHHHHHHTTTSSEEECCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHhcccccCCCcCHHHHHHHHCCCHHHH
Confidence 445677888777766544433333456677778775544
No 4
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=23.70 E-value=26 Score=23.96 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=21.4
Q ss_pred HhhhchhhHHHHcCCchhhhhhcccchhhh
Q 029270 91 VEKAGLLSKAEELGVTLSSIEKLGLFSKAE 120 (196)
Q Consensus 91 ~e~~GLLskaE~~GlSLS~iEklGlLSkAE 120 (196)
.|...|+..|.+.|+|+.+|.++=-+.+..
T Consensus 13 ~ewl~LI~~Ak~lGlsleEIrefL~l~~~~ 42 (57)
T 1b0n_B 13 QEWVELMVEAKEANISPEEIRKYLLLNKKS 42 (57)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhccC
Confidence 456677888999999999999984444433
No 5
>3iz6_S 40S ribosomal protein S19 (S19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=22.80 E-value=31 Score=27.71 Aligned_cols=70 Identities=27% Similarity=0.534 Sum_probs=42.8
Q ss_pred ccccccCCCCCCCCCccceeeeeccccccccccccc---------cc-------------eeeec----c----cccCCC
Q 029270 22 SSKLKPRSNRLFPAKNVSTIVAMASRKKVNKYDANW---------EK-------------QWFGA----G----IFCEGS 71 (196)
Q Consensus 22 ~s~~~~~~~~~~p~~~~~~v~amA~~Kkvn~~d~~w---------~k-------------~~fg~----G----~f~e~s 71 (196)
..|.|...+...|.- .-++=.+..|....||++| ++ .+||- | -|..++
T Consensus 22 A~~LK~~gki~~P~W--~d~vKTg~~KEl~P~d~DW~Y~RaASi~R~lYlrg~vGV~~lrk~YGg~krrG~~P~h~~~as 99 (146)
T 3iz6_S 22 SAHLKRSGKMELPEW--VDIVKTARFKELPPYDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSS 99 (146)
T ss_dssp HTTGGGSSCCCCTTT--GGGCCSSSSCSSSTHHHHTHHHHHHHHHHHHHHHCSBCHHHHHSSSCCCCCCCSSCCCCCCCC
T ss_pred HHHHHHcCCCCCCch--HHHhhccccccCCCCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHCCCCCCCCCCCcccCCC
Confidence 446777777888853 3355567788888999998 22 13332 1 122334
Q ss_pred cchhhhHHHhhHhhhhhhhHhh
Q 029270 72 EEVEVDMFKKLEQRKVLSNVEK 93 (196)
Q Consensus 72 e~~~~~ll~~~e~~klLS~~e~ 93 (196)
....=++|..+|+.|++.+.++
T Consensus 100 g~iiR~~LQqLE~~g~Vek~~~ 121 (146)
T 3iz6_S 100 GAISRNILQQLQKMGIIDVDPK 121 (146)
T ss_dssp HHHHHHHHHHHHHHTSEEEETT
T ss_pred cHHHHHHHHHHHHCCCeEecCC
Confidence 4445567777777777766654
No 6
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=18.44 E-value=1e+02 Score=20.93 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=23.9
Q ss_pred hhHHHHcCCchhhhhhcccchhhhhhchhhh
Q 029270 97 LSKAEELGVTLSSIEKLGLFSKAEELGLLSL 127 (196)
Q Consensus 97 LskaE~~GlSLS~iEklGlLSkAE~lGlLS~ 127 (196)
-..|++.|+|-+.|.+. |.+.|+.|++..
T Consensus 35 ~eLA~~Lgvs~~tV~~~--L~~L~~~G~I~~ 63 (77)
T 1qgp_A 35 HDLSGKLGTPKKEINRV--LYSLAKKGKLQK 63 (77)
T ss_dssp HHHHHHHCCCHHHHHHH--HHHHHHHTSEEE
T ss_pred HHHHHHHCcCHHHHHHH--HHHHHHCCCEEe
Confidence 45788999999999988 889999887643
No 7
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=17.93 E-value=1.1e+02 Score=21.32 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=24.2
Q ss_pred hhHHHHcCCchhhhhhcccchhhhhhchhhh
Q 029270 97 LSKAEELGVTLSSIEKLGLFSKAEELGLLSL 127 (196)
Q Consensus 97 LskaE~~GlSLS~iEklGlLSkAE~lGlLS~ 127 (196)
-..|++.|+|-+.|++. |.+.|+.|++..
T Consensus 31 ~eLA~~Lgvsr~tV~~~--L~~Le~~G~I~~ 59 (81)
T 1qbj_A 31 HDLSGKLGTPKKEINRV--LYSLAKKGKLQK 59 (81)
T ss_dssp HHHHHHHTCCHHHHHHH--HHHHHHTTSEEE
T ss_pred HHHHHHHCcCHHHHHHH--HHHHHHCCCEEe
Confidence 45788999999999998 999999997643
No 8
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=16.54 E-value=69 Score=21.02 Aligned_cols=29 Identities=7% Similarity=0.186 Sum_probs=23.9
Q ss_pred hhhHHHHcCCchhhhhhcccchhhhhhchhh
Q 029270 96 LLSKAEELGVTLSSIEKLGLFSKAEELGLLS 126 (196)
Q Consensus 96 LLskaE~~GlSLS~iEklGlLSkAE~lGlLS 126 (196)
.=..|++.|+|-+.+.+. +...++.|++.
T Consensus 28 ~~eLA~~lglsr~tv~~~--l~~L~~~G~I~ 56 (67)
T 2heo_A 28 IFQLVKKCQVPKKTLNQV--LYRLKKEDRVS 56 (67)
T ss_dssp HHHHHHHHCSCHHHHHHH--HHHHHHTTSEE
T ss_pred HHHHHHHHCcCHHHHHHH--HHHHHHCCcEe
Confidence 455788999999999998 88888888753
No 9
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=15.29 E-value=49 Score=23.26 Aligned_cols=19 Identities=11% Similarity=0.387 Sum_probs=14.8
Q ss_pred CcchhhhHHHhhHhhhhhh
Q 029270 71 SEEVEVDMFKKLEQRKVLS 89 (196)
Q Consensus 71 se~~~~~ll~~~e~~klLS 89 (196)
+.++.+++|+|+|++||+.
T Consensus 38 ~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 38 EKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp CHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHHHHHHCCCee
Confidence 4566789999999988763
No 10
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=14.11 E-value=1.3e+02 Score=20.70 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=24.9
Q ss_pred HhhhhhhhHhh--hchhhHHHHcCCchhhhhhcccchhhhhhchhh
Q 029270 83 EQRKVLSNVEK--AGLLSKAEELGVTLSSIEKLGLFSKAEELGLLS 126 (196)
Q Consensus 83 e~~klLS~~e~--~GLLskaE~~GlSLS~iEklGlLSkAE~lGlLS 126 (196)
.+.++|....+ ..+=..+++.|+|-+.+=+. |.+.|+.|++.
T Consensus 33 ~~~~il~~L~~~~~s~~ela~~l~is~stvsr~--l~~Le~~Glv~ 76 (119)
T 2lkp_A 33 SRLMILTQLRNGPLPVTDLAEAIGMEQSAVSHQ--LRVLRNLGLVV 76 (119)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHSSCHHHHHHH--HHHHHHHCSEE
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHHH--HHHHHHCCCEE
Confidence 34444444433 33345677888887777666 66677777643
Done!