Query 029270
Match_columns 196
No_of_seqs 59 out of 61
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 16:37:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029270.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029270hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q08a_ a.6.1.3 (A:) Transcrip 31.9 8.8 0.00064 25.7 1.5 25 89-113 1-25 (94)
2 d1gwya_ b.97.1.1 (A:) Sticholy 27.5 14 0.001 28.9 2.1 31 51-82 104-134 (175)
3 d1zfoa_ g.39.1.4 (A:) LASP-1 { 21.2 17 0.0013 21.1 1.2 17 46-62 14-30 (30)
4 d3ctaa1 a.4.5.28 (A:5-89) Ta10 21.0 23 0.0017 23.0 2.0 49 76-126 4-52 (85)
5 d1z05a1 a.4.5.63 (A:10-80) Tra 18.9 46 0.0033 20.4 3.0 45 80-126 4-51 (71)
6 d1iaza_ b.97.1.1 (A:) Equinato 18.2 22 0.0016 27.6 1.5 22 51-72 102-123 (175)
7 d1xcoa_ c.77.1.5 (A:) Phosphot 17.1 19 0.0014 28.8 1.0 46 67-112 22-70 (324)
8 d2cpga_ a.43.1.3 (A:) Transcri 12.0 56 0.0041 20.1 1.9 11 134-144 26-36 (43)
9 d2uubc1 d.52.3.1 (C:2-106) Rib 10.5 42 0.003 23.1 1.1 11 53-63 13-23 (105)
10 d1udla_ b.34.2.1 (A:) Intersec 10.2 1.7E+02 0.012 18.6 4.2 11 39-49 35-45 (98)
No 1
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=31.89 E-value=8.8 Score=25.71 Aligned_cols=25 Identities=32% Similarity=0.616 Sum_probs=20.7
Q ss_pred hhHhhhchhhHHHHcCCchhhhhhc
Q 029270 89 SNVEKAGLLSKAEELGVTLSSIEKL 113 (196)
Q Consensus 89 S~~e~~GLLskaE~~GlSLS~iEkl 113 (196)
|.+++..++..+.++|+||++|-++
T Consensus 1 sDl~RL~fI~~ar~lGFsL~EI~~l 25 (94)
T d1q08a_ 1 SDLQRLKFIRHARQLGFSLESIREL 25 (94)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 3456777889999999999999877
No 2
>d1gwya_ b.97.1.1 (A:) Sticholysin II {Carribean sea anemone (Stoichactis helianthus) [TaxId: 6123]}
Probab=27.45 E-value=14 Score=28.88 Aligned_cols=31 Identities=23% Similarity=0.604 Sum_probs=23.5
Q ss_pred ccccccccceeeecccccCCCcchhhhHHHhh
Q 029270 51 NKYDANWEKQWFGAGIFCEGSEEVEVDMFKKL 82 (196)
Q Consensus 51 n~~d~~w~k~~fg~G~f~e~se~~~~~ll~~~ 82 (196)
+.||=||-+.||.+|+|....+.+ -++++.+
T Consensus 104 VPyDYNlYsNW~aV~i~~~~~~~d-~~~y~~L 134 (175)
T d1gwya_ 104 VPFDYNWYSNWWDVKIYSGKRRAD-QGMYEDL 134 (175)
T ss_dssp ECSCCSSCCCEEEEEEEESCCCCC-HHHHHHH
T ss_pred cCcchhhhhhheeeeeccCCcCcc-hHHHHHH
Confidence 679999999999999997664433 3555554
No 3
>d1zfoa_ g.39.1.4 (A:) LASP-1 {Pig (Sus scrofa) [TaxId: 9823]}
Probab=21.17 E-value=17 Score=21.15 Aligned_cols=17 Identities=41% Similarity=0.663 Sum_probs=14.6
Q ss_pred cccccccccccccceee
Q 029270 46 SRKKVNKYDANWEKQWF 62 (196)
Q Consensus 46 ~~Kkvn~~d~~w~k~~f 62 (196)
|.-|+|-.|..|-|+.|
T Consensus 14 p~Ekl~ClDk~WHK~CF 30 (30)
T d1zfoa_ 14 PTEKVNCLDKFWHKACF 30 (30)
T ss_dssp GGGCCCSSSSCCCGGGC
T ss_pred cHHHhhhhHHHHhhccC
Confidence 45689999999999887
No 4
>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}
Probab=21.02 E-value=23 Score=23.02 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=26.6
Q ss_pred hhHHHhhHhhhhhhhHhhhchhhHHHHcCCchhhhhhcccchhhhhhchhh
Q 029270 76 VDMFKKLEQRKVLSNVEKAGLLSKAEELGVTLSSIEKLGLFSKAEELGLLS 126 (196)
Q Consensus 76 ~~ll~~~e~~klLS~~e~~GLLskaE~~GlSLS~iEklGlLSkAE~lGlLS 126 (196)
+..|+++.+..-.++-...=.-..+++.|+|.+.+=+. +.+.|+.|++.
T Consensus 4 ~~~l~~l~~~~~~~~~~~lt~~eLa~~l~i~~~~vs~~--l~~Le~~GlV~ 52 (85)
T d3ctaa1 4 YRAIKKIKEAAEASNRAYLTSSKLADMLGISQQSASRI--IIDLEKNGYIT 52 (85)
T ss_dssp HHHHHHHHHHTTTSSEEECCHHHHHHHHTSCHHHHHHH--HHHHHHTTSEE
T ss_pred HHHHHHHHHhhhccCCCCCCHHHHHHHHCCCHHHHHHH--HHHHHHCCCee
Confidence 44455554433332222222245678888887776555 66666666543
No 5
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=18.86 E-value=46 Score=20.37 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=29.7
Q ss_pred HhhHhhhhhhhHhhhchhh---HHHHcCCchhhhhhcccchhhhhhchhh
Q 029270 80 KKLEQRKVLSNVEKAGLLS---KAEELGVTLSSIEKLGLFSKAEELGLLS 126 (196)
Q Consensus 80 ~~~e~~klLS~~e~~GLLs---kaE~~GlSLS~iEklGlLSkAE~lGlLS 126 (196)
++.-+.++|.-..+.|=+| .++..|+|.+.+-+. +...++.|++.
T Consensus 4 r~~N~~~Il~~l~~~g~~sr~eLa~~~glS~~Tv~~~--l~~L~~~Glv~ 51 (71)
T d1z05a1 4 KQINAGRVYKLIDQKGPISRIDLSKESELAPASITKI--TRELIDAHLIH 51 (71)
T ss_dssp HHHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHH--HHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHH--HHHHHHCCCEE
Confidence 3333444555444444444 467889999998887 88888888764
No 6
>d1iaza_ b.97.1.1 (A:) Equinatoxin II (eqtII, tenebrosin C) {European sea anemone (Actinia equina) [TaxId: 6106]}
Probab=18.19 E-value=22 Score=27.61 Aligned_cols=22 Identities=27% Similarity=0.690 Sum_probs=18.8
Q ss_pred ccccccccceeeecccccCCCc
Q 029270 51 NKYDANWEKQWFGAGIFCEGSE 72 (196)
Q Consensus 51 n~~d~~w~k~~fg~G~f~e~se 72 (196)
+.||=||-|.||.+|+|..+.+
T Consensus 102 VPyDYNlYsNW~~V~v~~~~~~ 123 (175)
T d1iaza_ 102 VPYDYNWYSNWWNVRIYKGKRR 123 (175)
T ss_dssp ECSCTTTCCCEEEEEEESSCCC
T ss_pred cCcchhhhhhheeeeeccCCcc
Confidence 6799999999999999965543
No 7
>d1xcoa_ c.77.1.5 (A:) Phosphotransacetylase Pta {Bacillus subtilis [TaxId: 1423]}
Probab=17.14 E-value=19 Score=28.78 Aligned_cols=46 Identities=33% Similarity=0.488 Sum_probs=29.0
Q ss_pred ccCCCcchhhhHHHhhHhhhhhhhH---hhhchhhHHHHcCCchhhhhh
Q 029270 67 FCEGSEEVEVDMFKKLEQRKVLSNV---EKAGLLSKAEELGVTLSSIEK 112 (196)
Q Consensus 67 f~e~se~~~~~ll~~~e~~klLS~~---e~~GLLskaE~~GlSLS~iEk 112 (196)
|+|+.++..++-..++.+.|+..-. .+.-+-..+++.|++|+++|=
T Consensus 22 ~~EgeD~rvL~Aa~~~~~~gi~~pILiG~~~~I~~~a~~~gl~l~~ieI 70 (324)
T d1xcoa_ 22 FPEGLDERILEAVSKLAGNKVLNPIVIGNENEIQAKAKELNLTLGGVKI 70 (324)
T ss_dssp ESCTTCHHHHHHHHHHHHTTSSEEEEESCHHHHHHHHHTTTBCCTTCEE
T ss_pred EeCCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHHcCCCccccEE
Confidence 3577666666666666666654322 333445678888998887664
No 8
>d2cpga_ a.43.1.3 (A:) Transcriptional repressor CopG {Streptococcus agalactiae [TaxId: 1311]}
Probab=12.05 E-value=56 Score=20.08 Aligned_cols=11 Identities=36% Similarity=0.383 Sum_probs=5.7
Q ss_pred CChhhHHHhhH
Q 029270 134 ASPSTLASASL 144 (196)
Q Consensus 134 ~sP~aL~slaL 144 (196)
++.+++.+++|
T Consensus 26 ~sksa~~~~al 36 (43)
T d2cpga_ 26 LSKSAMISVAL 36 (43)
T ss_dssp CCHHHHHHHHH
T ss_pred ccHHHHHHHHH
Confidence 45555555544
No 9
>d2uubc1 d.52.3.1 (C:2-106) Ribosomal protein S3 N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=10.55 E-value=42 Score=23.07 Aligned_cols=11 Identities=27% Similarity=1.214 Sum_probs=8.9
Q ss_pred ccccccceeee
Q 029270 53 YDANWEKQWFG 63 (196)
Q Consensus 53 ~d~~w~k~~fg 63 (196)
+-.+|++.||.
T Consensus 13 i~k~w~S~W~a 23 (105)
T d2uubc1 13 ITRDWESRWYA 23 (105)
T ss_dssp TTSCCSCBCCC
T ss_pred ccCCCCceEcC
Confidence 34589999996
No 10
>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.24 E-value=1.7e+02 Score=18.63 Aligned_cols=11 Identities=18% Similarity=0.265 Sum_probs=6.3
Q ss_pred ceeeeeccccc
Q 029270 39 STIVAMASRKK 49 (196)
Q Consensus 39 ~~v~amA~~Kk 49 (196)
.+++|+-.++.
T Consensus 35 ~~~~Alydy~a 45 (98)
T d1udla_ 35 CQVIAMYDYAA 45 (98)
T ss_dssp EEEEESSCCCC
T ss_pred cEEEEccCCCC
Confidence 34666666654
Done!