BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029271
(196 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1O4V|A Chain A, Crystal Structure Of The Catalytic Subunit Of A
Phosphoribosylaminoimidazole Mutase (Tm0446) From
Thermotoga Maritima At 1.77 A Resolution
Length = 183
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/144 (43%), Positives = 90/144 (62%), Gaps = 1/144 (0%)
Query: 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 112
P VGIIM SD DLPVM AA L +FG+ YEI I+ H+ YA +A+ERGI++II
Sbjct: 14 PRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVII 73
Query: 113 VGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVASVPRNNAKNA 171
G G AHL G+ A+ + + VI VP+ + + D + + ++MP V VA+V NNAKNA
Sbjct: 74 AGAGGAAHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAINNAKNA 133
Query: 172 ALYAVKVLGIADEDLLERIRKYVE 195
+ A +LGI ++ ++++Y E
Sbjct: 134 GILAASILGIKYPEIARKVKEYKE 157
>pdb|3LP6|A Chain A, Crystal Structure Of Rv3275c-E60a From Mycobacterium
Tubercu 1.7a Resolution
pdb|3LP6|B Chain B, Crystal Structure Of Rv3275c-E60a From Mycobacterium
Tubercu 1.7a Resolution
pdb|3LP6|C Chain C, Crystal Structure Of Rv3275c-E60a From Mycobacterium
Tubercu 1.7a Resolution
pdb|3LP6|D Chain D, Crystal Structure Of Rv3275c-E60a From Mycobacterium
Tubercu 1.7a Resolution
Length = 174
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 89/146 (60%), Gaps = 1/146 (0%)
Query: 49 AADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 108
A + P VG+IM SD D PVM DAA L++F +P E++++ H+ + SYA A RG+
Sbjct: 4 AGERPRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGL 63
Query: 109 KIIIVGDGVEAHLSGVAAANSQILVIRVPL-LSEDWSEDDVINSIRMPSHVQVASVPRNN 167
++II G G AHL G+ AA + + VI VP+ L D +++ ++MP+ V VA+V
Sbjct: 64 EVIIAGAGGAAHLPGMVAAATPLPVIGVPVPLGRLDGLDSLLSIVQMPAGVPVATVSIGG 123
Query: 168 AKNAALYAVKVLGIADEDLLERIRKY 193
A NA L AV++LG A+ L RI +
Sbjct: 124 AGNAGLLAVRMLGAANPQLRARIVAF 149
>pdb|4B4K|A Chain A, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|B Chain B, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|C Chain C, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|D Chain D, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|E Chain E, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|F Chain F, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|G Chain G, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|H Chain H, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|I Chain I, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|J Chain J, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|K Chain K, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|L Chain L, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY3|A Chain A, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY3|B Chain B, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY3|C Chain C, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY3|D Chain D, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY4|A Chain A, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY4|B Chain B, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY4|C Chain C, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY4|D Chain D, Crystal Structure Of Bacillus Anthracis Pure
Length = 181
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 86/149 (57%), Gaps = 6/149 (4%)
Query: 54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 113
+VG+IM S D M A L + +PYE K++ H+ YA +A+ERG+K+II
Sbjct: 24 LVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIA 83
Query: 114 GDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVASVP--RNNAKN 170
G G AHL G+ AA + + VI VP+ S+ + D +++ ++MP V VA+V + + N
Sbjct: 84 GAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTN 143
Query: 171 AALYAVKVLGIADEDL---LERIRKYVEE 196
A L A ++LG +D+ LE R+ +E+
Sbjct: 144 AGLLAAQILGSFHDDIHDALELRREAIEK 172
>pdb|1XMP|A Chain A, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|B Chain B, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|C Chain C, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|D Chain D, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|E Chain E, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|F Chain F, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|G Chain G, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|H Chain H, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
Length = 170
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 86/149 (57%), Gaps = 6/149 (4%)
Query: 54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 113
+VG+IM S D M A L + +PYE K++ H+ YA +A+ERG+K+II
Sbjct: 13 LVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIA 72
Query: 114 GDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVASVP--RNNAKN 170
G G AHL G+ AA + + VI VP+ S+ + D +++ ++MP V VA+V + + N
Sbjct: 73 GAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTN 132
Query: 171 AALYAVKVLGIADEDL---LERIRKYVEE 196
A L A ++LG +D+ LE R+ +E+
Sbjct: 133 AGLLAAQILGSFHDDIHDALELRREAIEK 161
>pdb|3OPQ|A Chain A, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure.
pdb|3OPQ|B Chain B, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure.
pdb|3OPQ|C Chain C, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure.
pdb|3OPQ|D Chain D, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure.
pdb|3OPQ|E Chain E, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure.
pdb|3OPQ|F Chain F, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure.
pdb|3OPQ|G Chain G, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure.
pdb|3OPQ|H Chain H, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure
Length = 163
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 80/145 (55%), Gaps = 3/145 (2%)
Query: 55 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 114
VG+I S D + L + G+ YE +++ H+ + YA +AKERG+K+II G
Sbjct: 5 VGVIXGSKSDWSTXKECCDILDNLGIGYECEVVSAHRTPDKXFDYAETAKERGLKVIIAG 64
Query: 115 DGVEAHLSGVAAANSQILVIRVPLLSEDW-SEDDVINSIRMPSHVQVAS--VPRNNAKNA 171
G AHL G AA + + V+ VP+ S +D +++ ++ P+ + VA+ + AKNA
Sbjct: 65 AGGAAHLPGXVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQXPAGIPVATFAIGXAGAKNA 124
Query: 172 ALYAVKVLGIADEDLLERIRKYVEE 196
AL+A +L D ++ + + ++ E
Sbjct: 125 ALFAASILQHTDINIAKALAEFRAE 149
>pdb|3OOW|A Chain A, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4.
pdb|3OOW|B Chain B, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4.
pdb|3OOW|C Chain C, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4.
pdb|3OOW|D Chain D, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4.
pdb|3OOW|E Chain E, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4.
pdb|3OOW|F Chain F, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4.
pdb|3OOW|G Chain G, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4.
pdb|3OOW|H Chain H, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4
Length = 166
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 81/145 (55%), Gaps = 3/145 (2%)
Query: 55 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 114
VG+I S D + L + G+ YE +++ H+ + YA +AKERG+K+II G
Sbjct: 8 VGVIXGSKSDWSTXKECCDILDNLGIGYECEVVSAHRTPDKXFDYAETAKERGLKVIIAG 67
Query: 115 DGVEAHLSGVAAANSQILVIRVPLLSEDWS-EDDVINSIRMPSHVQVAS--VPRNNAKNA 171
G AHL G AA + + V+ VP+ S + +D +++ ++ P+ + VA+ + AKNA
Sbjct: 68 AGGAAHLPGXVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQXPAGIPVATFAIGXAGAKNA 127
Query: 172 ALYAVKVLGIADEDLLERIRKYVEE 196
AL+A +L D ++ + + ++ E
Sbjct: 128 ALFAASILQHTDINIAKALAEFRAE 152
>pdb|4GRD|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Burkholderia
Cenocepacia J2315
pdb|4GRD|B Chain B, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Burkholderia
Cenocepacia J2315
pdb|4GRD|C Chain C, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Burkholderia
Cenocepacia J2315
pdb|4GRD|D Chain D, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Burkholderia
Cenocepacia J2315
Length = 173
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 68/112 (60%), Gaps = 1/112 (0%)
Query: 52 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKII 111
AP+VG++M S D VM A L +FGVPYE K++ H+ E YA A+ERG++ I
Sbjct: 12 APLVGVLMGSSSDWDVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAI 71
Query: 112 IVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVAS 162
I G G AHL G+ AA + + V+ VP+ S+ D ++SI +MP V VA+
Sbjct: 72 IAGAGGAAHLPGMLAAKTTVPVLGVPVASKYLKGVDSLHSIVQMPKGVPVAT 123
>pdb|1U11|A Chain A, Pure (N5-Carboxyaminoimidazole Ribonucleotide Mutase) From
The Acidophile Acetobacter Aceti
pdb|1U11|B Chain B, Pure (N5-Carboxyaminoimidazole Ribonucleotide Mutase) From
The Acidophile Acetobacter Aceti
Length = 182
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 70/125 (56%), Gaps = 3/125 (2%)
Query: 49 AADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 108
AA AP+VGIIM S D M A L++ +P+E I+ H+ YA +A ERG+
Sbjct: 18 AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGL 77
Query: 109 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVAS--VPR 165
+II G G AHL G+ AA +++ V+ VP+ S D +++ ++MP V V + +
Sbjct: 78 NVIIAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGA 137
Query: 166 NNAKN 170
+ AKN
Sbjct: 138 SGAKN 142
>pdb|2FW1|A Chain A, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8.5
pdb|2FW1|B Chain B, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8.5
pdb|2FWJ|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) From The Acidophilic Bacterium Acetobacter
Aceti, Complexed With Air (5-Aminoimidazole
Ribonucleotide)
pdb|2FWJ|B Chain B, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) From The Acidophilic Bacterium Acetobacter
Aceti, Complexed With Air (5-Aminoimidazole
Ribonucleotide)
Length = 183
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 70/125 (56%), Gaps = 3/125 (2%)
Query: 49 AADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 108
AA AP+VGIIM S D M A L++ +P+E I+ H+ YA +A ERG+
Sbjct: 19 AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGL 78
Query: 109 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVAS--VPR 165
+II G G AHL G+ AA +++ V+ VP+ S D +++ ++MP V V + +
Sbjct: 79 NVIIAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGA 138
Query: 166 NNAKN 170
+ AKN
Sbjct: 139 SGAKN 143
>pdb|2FWA|A Chain A, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) H89n From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 7
pdb|2FWA|B Chain B, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) H89n From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 7
Length = 183
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 3/125 (2%)
Query: 49 AADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 108
AA AP+VGIIM S D M A L++ +P+E I+ H+ YA +A ERG+
Sbjct: 19 AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGL 78
Query: 109 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVAS--VPR 165
+II G G A+L G+ AA +++ V+ VP+ S D +++ ++MP V V + +
Sbjct: 79 NVIIAGAGGAANLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGA 138
Query: 166 NNAKN 170
+ AKN
Sbjct: 139 SGAKN 143
>pdb|2FW6|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) Mutant H59n From The Acidophilic Bacterium
Acetobacter Aceti, At Ph 5.4
pdb|2FW6|B Chain B, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) Mutant H59n From The Acidophilic Bacterium
Acetobacter Aceti, At Ph 5.4
pdb|2FW7|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H59n From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
pdb|2FW7|B Chain B, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H59n From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
pdb|2FWP|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H59n From The Acidophilic Bacterium Acetobacter
Aceti, Bound To Isocair
pdb|2FWP|B Chain B, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H59n From The Acidophilic Bacterium Acetobacter
Aceti, Bound To Isocair
Length = 183
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 3/125 (2%)
Query: 49 AADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 108
AA AP+VGIIM S D M A L++ +P+E I+ ++ YA +A ERG+
Sbjct: 19 AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSANRTPDRLADYARTAAERGL 78
Query: 109 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVAS--VPR 165
+II G G AHL G+ AA +++ V+ VP+ S D +++ ++MP V V + +
Sbjct: 79 NVIIAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGA 138
Query: 166 NNAKN 170
+ AKN
Sbjct: 139 SGAKN 143
>pdb|2FWB|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H89f From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
pdb|2FWB|B Chain B, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H89f From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
Length = 183
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 49 AADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 108
AA AP+VGIIM S D M A L++ +P+E I+ H+ YA +A ERG+
Sbjct: 19 AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGL 78
Query: 109 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVAS--VPR 165
+II G G A L G+ AA +++ V+ VP+ S D +++ ++MP V V + +
Sbjct: 79 NVIIAGAGGAAFLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGA 138
Query: 166 NNAKN 170
+ AKN
Sbjct: 139 SGAKN 143
>pdb|2FW9|A Chain A, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) H59f From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
pdb|2FW9|B Chain B, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) H59f From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
Length = 183
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 49 AADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 108
AA AP+VGIIM S D M A L++ +P+E I+ + YA +A ERG+
Sbjct: 19 AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAFRTPDRLADYARTAAERGL 78
Query: 109 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVAS--VPR 165
+II G G AHL G+ AA +++ V+ VP+ S D +++ ++MP V V + +
Sbjct: 79 NVIIAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGA 138
Query: 166 NNAKN 170
+ AKN
Sbjct: 139 SGAKN 143
>pdb|2FWI|A Chain A, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) H59d, From The Acidophilic Bacterium Acetobacter
Aceti, Complexed With 5-aminoimidazole Ribonucleotide
(air)
pdb|2FWI|B Chain B, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) H59d, From The Acidophilic Bacterium Acetobacter
Aceti, Complexed With 5-aminoimidazole Ribonucleotide
(air)
Length = 183
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 49 AADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 108
AA AP+VGIIM S D M A L++ +P+E I+ + YA +A ERG+
Sbjct: 19 AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSADRTPDRLADYARTAAERGL 78
Query: 109 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVAS--VPR 165
+II G G AHL G+ AA +++ V+ VP+ S D +++ ++MP V V + +
Sbjct: 79 NVIIAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGA 138
Query: 166 NNAKN 170
+ AKN
Sbjct: 139 SGAKN 143
>pdb|2YWX|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Methanocaldococcus
Jannaschii
Length = 157
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 81/140 (57%), Gaps = 3/140 (2%)
Query: 57 IIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 116
IIM S+ DL + A L +FGV +E+++ H+ + ++K + I G
Sbjct: 4 IIMGSESDLKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKA---DVFIAIAG 60
Query: 117 VEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAV 176
+ AHL GV A+ + VI VP+ ++ D +++S++MP + VA+V + +NAA+ A+
Sbjct: 61 LAAHLPGVVASLTTKPVIAVPVDAKLDGLDALLSSVQMPPGIPVATVGIDRGENAAILAL 120
Query: 177 KVLGIADEDLLERIRKYVEE 196
++L + DE++ +++ +Y E+
Sbjct: 121 EILALKDENIAKKLIEYREK 140
>pdb|2FW8|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H89g From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
pdb|2FW8|B Chain B, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H89g From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
Length = 183
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 49 AADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 108
AA AP+VGIIM S D M A L++ +P+E I+ H+ YA +A ERG+
Sbjct: 19 AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGL 78
Query: 109 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVAS--VPR 165
+II G G A L G+ AA +++ V+ VP+ S D +++ ++MP V V + +
Sbjct: 79 NVIIAGAGGAAGLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGA 138
Query: 166 NNAKN 170
+ AKN
Sbjct: 139 SGAKN 143
>pdb|3ORS|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
pdb|3ORS|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
pdb|3ORS|C Chain C, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
pdb|3ORS|D Chain D, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
pdb|3ORS|E Chain E, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
pdb|3ORS|F Chain F, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
pdb|3ORS|G Chain G, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
pdb|3ORS|H Chain H, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
Length = 163
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 85/147 (57%), Gaps = 3/147 (2%)
Query: 50 ADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIK 109
++A V +IM S D +M ++ L F +PYE +++ H+ K + +A A+ERGI
Sbjct: 1 SNAMKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGIN 60
Query: 110 IIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQV--ASVPRN 166
III G G AHL G+ A+ + + VI VP+ ++ D +++ ++MP + V ++
Sbjct: 61 IIIAGAGGAAHLPGMVASLTTLPVIGVPIETKSLKGIDSLLSIVQMPGGIPVATTAIGAA 120
Query: 167 NAKNAALYAVKVLGIADEDLLERIRKY 193
AKNA + A ++L I + L+E++ +Y
Sbjct: 121 GAKNAGILAARMLSIQNPSLVEKLNQY 147
>pdb|2NSL|A Chain A, E. Coli Pure H45n Mutant Complexed With Cair
Length = 169
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 55 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 114
V I+M S D M AA VP+ ++++ ++ + S+A SA+E G ++II G
Sbjct: 10 VAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSANRTPDKLFSFAESAEENGYQVIIAG 69
Query: 115 DGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASV 163
G AHL G+ AA + + V+ VP+ S S D + SI +MP + V ++
Sbjct: 70 AGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTL 119
>pdb|2NSH|A Chain A, E. Coli Pure H45q Mutant Complexed With Nitro-Air
pdb|2NSJ|A Chain A, E. Coli Pure H45q Mutant Complexed With Cair
Length = 169
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Query: 55 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 114
V I+M S D M AA VP+ ++++ + + S+A SA+E G ++II G
Sbjct: 10 VAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAQRTPDKLFSFAESAEENGYQVIIAG 69
Query: 115 DGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASV 163
G AHL G+ AA + + V+ VP+ S S D + SI +MP + V ++
Sbjct: 70 AGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTL 119
>pdb|2H31|A Chain A, Crystal Structure Of Human Paics, A Bifunctional
Carboxylase And Synthetase In Purine Biosynthesis
Length = 425
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 73/148 (49%), Gaps = 4/148 (2%)
Query: 46 LLLAADAPI-VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 104
LLL +++ V ++ S DL + +FG+P E+++ H+ E L +
Sbjct: 258 LLLKSESQCRVVVLXGSTSDLGHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYE 317
Query: 105 ERGIKIIIVG-DGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASV 163
GI + V G L V + N+ VI P L+ DW DV +S+R+PS + ++V
Sbjct: 318 GDGIPTVFVAVAGRSNGLGPVXSGNTAYPVISCPPLTPDWGVQDVWSSLRLPSGLGCSTV 377
Query: 164 PRNNAKNAALYAVKVLGIADEDLLERIR 191
+ + +A +A ++ G+++ + ++R
Sbjct: 378 L--SPEGSAQFAAQIFGLSNHLVWSKLR 403
>pdb|3RG8|A Chain A, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|B Chain B, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|C Chain C, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|D Chain D, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|E Chain E, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|F Chain F, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|G Chain G, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|H Chain H, Crystal Structure Of Treponema Denticola Pure
Length = 159
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 5/145 (3%)
Query: 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSY--ALSAKERGIKI 110
P+V I+M S D+ A L FG+ Y I+I H+ + +S A +R K+
Sbjct: 3 PLVIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRP-KL 61
Query: 111 IIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKN 170
I G LSG + I P S+ ++ D+ +S+RMPS + A V KN
Sbjct: 62 YITIAGRSNALSGFVDGFVKGATIACPPPSDSFAGADIYSSLRMPSGISPALV--LEPKN 119
Query: 171 AALYAVKVLGIADEDLLERIRKYVE 195
AAL A ++ + D+++ + ++ Y+E
Sbjct: 120 AALLAARIFSLYDKEIADSVKSYME 144
>pdb|3RGG|A Chain A, Crystal Structure Of Treponema Denticola Pure Bound To Air
pdb|3RGG|B Chain B, Crystal Structure Of Treponema Denticola Pure Bound To Air
pdb|3RGG|C Chain C, Crystal Structure Of Treponema Denticola Pure Bound To Air
pdb|3RGG|D Chain D, Crystal Structure Of Treponema Denticola Pure Bound To Air
Length = 159
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 5/145 (3%)
Query: 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSY--ALSAKERGIKI 110
P+V I+M S D+ A L FG+ Y I+I H+ + +S A +R K+
Sbjct: 3 PLVIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRP-KL 61
Query: 111 IIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKN 170
I G LSG + I P S+ ++ D+ +S+RMPS + A V KN
Sbjct: 62 YITIAGRSNALSGFVDGFVKGATIACPPPSDSFAGADIYSSLRMPSGISPALV--LEPKN 119
Query: 171 AALYAVKVLGIADEDLLERIRKYVE 195
AAL A ++ + D+++ + ++ Y+E
Sbjct: 120 AALLAARIFSLYDKEIADSVKSYME 144
>pdb|1QCZ|A Chain A, Crystal Structure Of E. Coli Pure, An Unusual Mutase That
Catalyzes The Conversion Of N5-carboxyaminoimidazole
Ribonucleotide (n5-cair) To 4-carboxyaminoimidazole
Ribonucleotide (cair) In The Purine Biosynthetic Pathway
Length = 169
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%)
Query: 55 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 114
V I+ S D AA VP+ ++++ H+ + S+A SA+E G ++II G
Sbjct: 10 VAIVXGSKSDWATXQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAG 69
Query: 115 DGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI 152
G AHL G AA + + V+ VP+ S S D + SI
Sbjct: 70 AGGAAHLPGXIAAKTLVPVLGVPVQSAALSGVDSLYSI 107
>pdb|2ATE|A Chain A, Structure Of The Complex Of Pure With Nitroair
Length = 169
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%)
Query: 55 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 114
V I+ S D AA VP+ ++++ H+ + S+A SA+E G ++II G
Sbjct: 10 VAIVXGSKSDWATXQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAG 69
Query: 115 DGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI 152
G AHL G AA + + V+ VP+ S S D + SI
Sbjct: 70 AGGAAHLPGXIAAKTLVPVLGVPVQSAALSGVDSLYSI 107
>pdb|1D7A|A Chain A, Crystal Structure Of E. Coli Pure-Mononucleotide Complex.
pdb|1D7A|B Chain B, Crystal Structure Of E. Coli Pure-Mononucleotide Complex.
pdb|1D7A|C Chain C, Crystal Structure Of E. Coli Pure-Mononucleotide Complex.
pdb|1D7A|D Chain D, Crystal Structure Of E. Coli Pure-Mononucleotide Complex.
pdb|1D7A|L Chain L, Crystal Structure Of E. Coli Pure-Mononucleotide Complex.
pdb|1D7A|M Chain M, Crystal Structure Of E. Coli Pure-Mononucleotide Complex.
pdb|1D7A|N Chain N, Crystal Structure Of E. Coli Pure-Mononucleotide Complex.
pdb|1D7A|O Chain O, Crystal Structure Of E. Coli Pure-Mononucleotide Complex
Length = 161
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%)
Query: 55 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 114
V I+ S D AA VP+ ++++ H+ + S+A SA+E G ++II G
Sbjct: 4 VAIVXGSKSDWATXQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAG 63
Query: 115 DGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI 152
G AHL G AA + + V+ VP+ S S D + SI
Sbjct: 64 AGGAAHLPGXIAAKTLVPVLGVPVQSAALSGVDSLYSI 101
>pdb|3KUU|A Chain A, Structure Of The Pure Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Yersinia Pestis
pdb|3KUU|B Chain B, Structure Of The Pure Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Yersinia Pestis
pdb|3KUU|C Chain C, Structure Of The Pure Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Yersinia Pestis
pdb|3KUU|D Chain D, Structure Of The Pure Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Yersinia Pestis
Length = 174
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 55 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 114
+ I+ S D AA L+ VP+ ++++ H+ S+A A+ G+ +II G
Sbjct: 15 IAIVXGSKSDWATXQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAG 74
Query: 115 DGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASV 163
+G AHL G AA + + V+ VP+ S S D + SI + P + V ++
Sbjct: 75 NGGAAHLPGXLAAKTLVPVLGVPVQSAALSGVDSLYSIVQXPRGIPVGTL 124
>pdb|3TRH|A Chain A, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|B Chain B, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|C Chain C, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|D Chain D, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|E Chain E, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|F Chain F, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|G Chain G, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|H Chain H, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|I Chain I, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|J Chain J, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|K Chain K, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|L Chain L, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|M Chain M, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|N Chain N, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|O Chain O, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|P Chain P, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
Length = 169
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 74/140 (52%), Gaps = 3/140 (2%)
Query: 54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 113
V I+ SD DL A L G+P+E IL H+ KE + + +A RG + I
Sbjct: 8 FVAILXGSDSDLSTXETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIA 67
Query: 114 GDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVA--SVPRNNAKN 170
G+ AHL+G AA++ VI VP D ++++++ P V VA ++ + AKN
Sbjct: 68 AAGLAAHLAGTIAAHTLKPVIGVPXAGGSLGGLDALLSTVQXPGGVPVACTAIGKAGAKN 127
Query: 171 AALYAVKVLGIADEDLLERI 190
AA+ A +++ + D+ + +++
Sbjct: 128 AAILAAQIIALQDKSIAQKL 147
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 71 AARTLSDFGVPYEIKILPPH 90
AAR S+FGV I +LPPH
Sbjct: 522 AARIQSEFGVTAAIDLLPPH 541
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
Length = 359
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 9/47 (19%)
Query: 77 DFGVPYE---------IKILPPHQNCKEALSYALSAKERGIKIIIVG 114
DFG YE + I P KE S L A+ER +KI G
Sbjct: 218 DFGATYENYCADITRVVSIGEPSDEVKEVHSIVLEAQERALKIAKAG 264
>pdb|3PZ9|A Chain A, Native Structure Of Endo-1,4-Beta-D-Mannanase From
Thermotoga Petrophila Rku-1
pdb|3PZG|A Chain A, I222 Crystal Form Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1
pdb|3PZI|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 In Complex With Beta-D-Glucose
pdb|3PZM|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Three Glycerol Molecules
pdb|3PZN|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Citrate And Glycerol
pdb|3PZO|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 In Complex With Three Maltose Molecules
pdb|3PZQ|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Maltose And Glycerol
Length = 383
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 78 FGVPYEIKILPPHQNCKEALSYALS-AKERGIKIIIV 113
FGVP + + QN E L Y ++ AKE GIK+IIV
Sbjct: 86 FGVP---EGISNAQNGFERLDYTIAKAKELGIKLIIV 119
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 26.9 bits (58), Expect = 7.6, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 21/121 (17%)
Query: 79 GVPYEIKIL--PPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAANSQILVIR 135
G Y++ ++ P H + +S AL+A E + +I G+EA ++ A Q LVI
Sbjct: 70 GNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVI- 128
Query: 136 VPLLSEDWSEDDVINSIRMPS------HVQVASVPRNNAKNAALYAVKVLGIADEDLLER 189
+P VIN I +PS Q+ V + + A L + K GI E++LE
Sbjct: 129 IP----------VINKIDLPSADVDRVKKQIEEVLGLDPEEAILASAKE-GIGIEEILEA 177
Query: 190 I 190
I
Sbjct: 178 I 178
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 26.9 bits (58), Expect = 7.8, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 21/121 (17%)
Query: 79 GVPYEIKIL--PPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAANSQILVIR 135
G Y++ ++ P H + +S AL+A E + +I G+EA ++ A Q LVI
Sbjct: 70 GNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVI- 128
Query: 136 VPLLSEDWSEDDVINSIRMPS------HVQVASVPRNNAKNAALYAVKVLGIADEDLLER 189
+P VIN I +PS Q+ V + + A L + K GI E++LE
Sbjct: 129 IP----------VINKIDLPSADVDRVKKQIEEVLGLDPEEAILASAKE-GIGIEEILEA 177
Query: 190 I 190
I
Sbjct: 178 I 178
>pdb|2PK0|A Chain A, Structure Of The S. Agalactiae Serine/threonine
Phosphatase At 2.65 Resolution
pdb|2PK0|B Chain B, Structure Of The S. Agalactiae Serine/threonine
Phosphatase At 2.65 Resolution
pdb|2PK0|C Chain C, Structure Of The S. Agalactiae Serine/threonine
Phosphatase At 2.65 Resolution
pdb|2PK0|D Chain D, Structure Of The S. Agalactiae Serine/threonine
Phosphatase At 2.65 Resolution
Length = 250
Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 107 GIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDD 147
G+ +II+ DG+ H +G A+ + V L DW+E D
Sbjct: 33 GVPLIILADGMGGHRAGNIASE-----MTVTDLGSDWAETD 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,117,252
Number of Sequences: 62578
Number of extensions: 189295
Number of successful extensions: 517
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 468
Number of HSP's gapped (non-prelim): 41
length of query: 196
length of database: 14,973,337
effective HSP length: 94
effective length of query: 102
effective length of database: 9,091,005
effective search space: 927282510
effective search space used: 927282510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)