Query 029271
Match_columns 196
No_of_seqs 165 out of 1255
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 10:13:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029271.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029271hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01162 purE phosphoribosyla 100.0 7.5E-60 1.6E-64 385.9 16.5 142 55-196 1-143 (156)
2 COG0041 PurE Phosphoribosylcar 100.0 1.4E-59 3E-64 383.1 16.5 144 53-196 3-147 (162)
3 PF00731 AIRC: AIR carboxylase 100.0 6.4E-58 1.4E-62 372.5 12.9 144 53-196 1-145 (150)
4 PLN02948 phosphoribosylaminoim 100.0 8.4E-51 1.8E-55 386.3 17.7 148 49-196 407-555 (577)
5 COG1691 NCAIR mutase (PurE)-re 100.0 4.7E-31 1E-35 227.4 12.4 128 49-182 114-250 (254)
6 KOG2835 Phosphoribosylamidoimi 99.9 1.1E-23 2.5E-28 191.5 3.4 142 52-195 208-350 (373)
7 KOG2835 Phosphoribosylamidoimi 99.1 2E-11 4.3E-16 111.9 1.5 107 9-140 215-322 (373)
8 cd08170 GlyDH Glycerol dehydro 97.5 0.00075 1.6E-08 60.6 9.3 88 53-140 23-111 (351)
9 PRK00843 egsA NAD(P)-dependent 97.4 0.00076 1.6E-08 61.0 9.2 86 53-140 35-121 (350)
10 cd08550 GlyDH-like Glycerol_de 97.4 0.00093 2E-08 60.1 9.0 88 53-140 23-111 (349)
11 cd08175 G1PDH Glycerol-1-phosp 97.2 0.0016 3.5E-08 58.5 8.6 87 53-140 24-114 (348)
12 cd08171 GlyDH-like2 Glycerol d 97.2 0.0015 3.2E-08 58.8 8.3 88 53-140 23-112 (345)
13 PRK09423 gldA glycerol dehydro 97.2 0.0021 4.6E-08 58.3 9.4 88 53-140 30-118 (366)
14 TIGR01357 aroB 3-dehydroquinat 97.2 0.0027 5.8E-08 57.0 9.8 87 53-139 21-116 (344)
15 cd08195 DHQS Dehydroquinate sy 97.2 0.0027 5.8E-08 57.2 9.8 87 53-139 25-120 (345)
16 cd08551 Fe-ADH iron-containing 97.2 0.002 4.4E-08 58.1 8.7 88 53-140 24-132 (370)
17 cd08173 Gro1PDH Sn-glycerol-1- 97.1 0.0044 9.5E-08 55.6 9.8 86 53-140 26-112 (339)
18 cd08549 G1PDH_related Glycerol 97.1 0.0034 7.3E-08 56.4 9.0 87 53-140 25-114 (332)
19 cd07766 DHQ_Fe-ADH Dehydroquin 97.0 0.0046 9.9E-08 54.8 9.2 87 53-140 24-114 (332)
20 PRK00002 aroB 3-dehydroquinate 96.9 0.0067 1.4E-07 55.0 9.8 87 53-139 32-127 (358)
21 cd08185 Fe-ADH1 Iron-containin 96.9 0.0059 1.3E-07 55.6 9.4 88 53-140 26-140 (380)
22 cd08199 EEVS 2-epi-5-epi-valio 96.9 0.0084 1.8E-07 54.7 9.7 87 53-139 27-123 (354)
23 cd08197 DOIS 2-deoxy-scyllo-in 96.8 0.0094 2E-07 54.4 9.9 87 53-139 24-119 (355)
24 cd08183 Fe-ADH2 Iron-containin 96.8 0.0077 1.7E-07 54.8 9.0 86 53-140 23-131 (374)
25 cd08182 HEPD Hydroxyethylphosp 96.8 0.0085 1.8E-07 54.2 9.1 86 53-140 24-133 (367)
26 cd08176 LPO Lactadehyde:propan 96.7 0.0068 1.5E-07 55.2 8.2 88 53-140 29-137 (377)
27 cd08174 G1PDH-like Glycerol-1- 96.7 0.015 3.3E-07 51.9 10.2 82 53-140 26-109 (331)
28 cd08193 HVD 5-hydroxyvalerate 96.7 0.0049 1.1E-07 56.0 6.7 88 53-140 27-135 (376)
29 cd08194 Fe-ADH6 Iron-containin 96.6 0.012 2.6E-07 53.5 8.9 88 53-140 24-132 (375)
30 cd08187 BDH Butanol dehydrogen 96.5 0.013 2.8E-07 53.4 8.7 88 53-140 29-138 (382)
31 cd08186 Fe-ADH8 Iron-containin 96.5 0.01 2.2E-07 54.2 8.0 88 53-140 27-137 (383)
32 TIGR02638 lactal_redase lactal 96.5 0.014 3E-07 53.3 8.5 89 53-141 30-141 (379)
33 cd08189 Fe-ADH5 Iron-containin 96.5 0.01 2.2E-07 54.0 7.4 88 53-140 27-136 (374)
34 PLN02834 3-dehydroquinate synt 96.4 0.025 5.3E-07 53.2 9.9 87 53-139 101-198 (433)
35 cd08192 Fe-ADH7 Iron-containin 96.4 0.014 3.1E-07 52.8 8.0 88 53-140 25-137 (370)
36 cd08172 GlyDH-like1 Glycerol d 96.3 0.009 2E-07 53.7 6.4 86 53-140 24-110 (347)
37 cd08181 PPD-like 1,3-propanedi 96.3 0.023 4.9E-07 51.5 8.7 88 53-140 26-134 (357)
38 cd08178 AAD_C C-terminal alcoh 96.3 0.019 4.1E-07 52.7 8.2 67 53-119 22-90 (398)
39 PF13685 Fe-ADH_2: Iron-contai 96.2 0.005 1.1E-07 54.1 4.0 136 53-190 20-178 (250)
40 PF00465 Fe-ADH: Iron-containi 96.2 0.013 2.7E-07 52.9 6.5 87 54-141 23-132 (366)
41 cd08177 MAR Maleylacetate redu 96.2 0.012 2.5E-07 52.9 6.2 87 53-140 24-111 (337)
42 cd08191 HHD 6-hydroxyhexanoate 96.1 0.033 7.1E-07 51.0 8.9 87 53-140 23-131 (386)
43 cd08169 DHQ-like Dehydroquinat 96.1 0.043 9.4E-07 49.8 9.6 85 53-139 24-118 (344)
44 cd08179 NADPH_BDH NADPH-depend 96.1 0.04 8.6E-07 50.2 9.1 88 53-140 24-136 (375)
45 PRK15454 ethanol dehydrogenase 96.1 0.024 5.2E-07 52.4 7.7 88 53-140 50-158 (395)
46 cd08188 Fe-ADH4 Iron-containin 96.0 0.04 8.7E-07 50.3 8.6 88 53-140 29-137 (377)
47 PRK10624 L-1,2-propanediol oxi 95.9 0.042 9.1E-07 50.2 8.6 88 53-140 31-141 (382)
48 PRK14021 bifunctional shikimat 95.9 0.082 1.8E-06 50.9 10.8 85 54-139 211-304 (542)
49 PRK09860 putative alcohol dehy 95.9 0.042 9.1E-07 50.4 8.4 88 53-140 32-140 (383)
50 cd08190 HOT Hydroxyacid-oxoaci 95.9 0.051 1.1E-06 50.3 9.0 68 53-120 24-93 (414)
51 PRK06203 aroB 3-dehydroquinate 95.8 0.085 1.8E-06 48.9 10.0 87 53-139 43-146 (389)
52 cd08180 PDD 1,3-propanediol de 95.8 0.05 1.1E-06 48.6 8.3 87 53-140 23-119 (332)
53 PRK10586 putative oxidoreducta 95.7 0.052 1.1E-06 49.7 8.4 86 53-141 35-121 (362)
54 cd08198 DHQS-like2 Dehydroquin 95.3 0.16 3.5E-06 47.0 10.0 87 53-139 31-134 (369)
55 PRK15138 aldehyde reductase; P 95.3 0.076 1.6E-06 48.9 7.8 66 53-120 30-98 (387)
56 COG0371 GldA Glycerol dehydrog 95.1 0.083 1.8E-06 49.1 7.4 88 53-141 31-119 (360)
57 cd08196 DHQS-like1 Dehydroquin 95.0 0.22 4.8E-06 45.5 10.0 83 53-139 20-111 (346)
58 PRK15424 propionate catabolism 94.7 0.38 8.3E-06 46.7 11.2 129 52-195 14-153 (538)
59 PF06506 PrpR_N: Propionate ca 94.7 0.11 2.3E-06 42.6 6.4 81 92-181 18-101 (176)
60 COG1454 EutG Alcohol dehydroge 93.9 0.39 8.4E-06 44.8 9.1 88 53-140 30-138 (377)
61 PRK13805 bifunctional acetalde 93.9 0.35 7.6E-06 48.9 9.4 65 53-119 481-551 (862)
62 TIGR02417 fruct_sucro_rep D-fr 93.6 4.2 9.1E-05 34.9 14.4 112 52-181 60-176 (327)
63 TIGR02329 propionate_PrpR prop 93.5 1.2 2.5E-05 43.2 11.9 117 68-195 16-143 (526)
64 cd08184 Fe-ADH3 Iron-containin 93.3 0.57 1.2E-05 42.8 9.0 84 54-140 27-133 (347)
65 PF04392 ABC_sub_bind: ABC tra 93.2 0.34 7.5E-06 42.1 7.1 83 54-138 1-89 (294)
66 cd03786 GT1_UDP-GlcNAc_2-Epime 93.1 0.81 1.7E-05 39.7 9.3 82 54-137 30-119 (363)
67 cd06283 PBP1_RegR_EndR_KdgR_li 93.1 3.8 8.3E-05 33.4 12.7 80 55-136 2-84 (267)
68 cd06280 PBP1_LacI_like_4 Ligan 92.9 4.4 9.6E-05 33.4 13.0 79 55-136 2-83 (263)
69 cd06275 PBP1_PurR Ligand-bindi 92.9 4.5 9.8E-05 33.1 13.8 82 55-138 2-87 (269)
70 COG3199 Predicted inorganic po 92.7 0.98 2.1E-05 42.1 9.5 89 75-181 65-157 (355)
71 cd03028 GRX_PICOT_like Glutare 92.3 0.72 1.6E-05 33.7 6.8 74 53-153 8-85 (90)
72 TIGR03405 Phn_Fe-ADH phosphona 92.2 0.74 1.6E-05 41.8 8.1 87 53-141 24-137 (355)
73 PF13407 Peripla_BP_4: Peripla 91.8 5.8 0.00012 32.5 12.4 81 55-136 1-86 (257)
74 COG2515 Acd 1-aminocyclopropan 91.6 0.79 1.7E-05 42.1 7.5 76 66-141 132-218 (323)
75 PRK01372 ddl D-alanine--D-alan 91.6 0.53 1.2E-05 40.7 6.2 78 52-138 4-90 (304)
76 cd06311 PBP1_ABC_sugar_binding 91.6 6.8 0.00015 32.5 12.6 83 55-137 2-92 (274)
77 TIGR00365 monothiol glutaredox 91.5 1.1 2.4E-05 33.5 7.0 33 53-85 12-47 (97)
78 PRK13055 putative lipid kinase 91.2 1.4 3.1E-05 39.5 8.8 77 60-139 14-93 (334)
79 cd06298 PBP1_CcpA_like Ligand- 90.8 7.9 0.00017 31.6 12.3 79 55-136 2-84 (268)
80 PRK11914 diacylglycerol kinase 90.7 1.4 3.1E-05 38.6 8.2 80 54-138 10-95 (306)
81 cd06305 PBP1_methylthioribose_ 90.6 8.5 0.00018 31.6 12.4 81 54-136 1-86 (273)
82 cd01391 Periplasmic_Binding_Pr 90.5 2.4 5.1E-05 33.3 8.5 85 54-138 1-90 (269)
83 COG0337 AroB 3-dehydroquinate 90.5 2 4.3E-05 40.1 9.1 140 54-193 35-202 (360)
84 cd01537 PBP1_Repressors_Sugar_ 90.3 7.9 0.00017 30.9 12.7 82 55-139 2-88 (264)
85 cd01539 PBP1_GGBP Periplasmic 90.3 2.9 6.3E-05 35.9 9.5 83 54-136 1-88 (303)
86 PRK10653 D-ribose transporter 90.2 11 0.00023 32.1 13.6 83 53-137 27-114 (295)
87 COG2984 ABC-type uncharacteriz 90.0 1.4 3E-05 40.6 7.6 80 54-135 32-114 (322)
88 PRK13337 putative lipid kinase 90.0 1.3 2.8E-05 39.0 7.3 76 60-139 13-91 (304)
89 PRK13054 lipid kinase; Reviewe 89.8 2.4 5.1E-05 37.3 8.7 72 54-129 5-77 (300)
90 cd06273 PBP1_GntR_like_1 This 89.2 11 0.00024 30.8 12.8 78 55-136 2-84 (268)
91 TIGR03702 lip_kinase_YegS lipi 89.2 3 6.5E-05 36.5 8.9 69 57-129 5-73 (293)
92 PRK10727 DNA-binding transcrip 89.2 14 0.0003 32.0 13.9 63 52-116 59-124 (343)
93 cd06323 PBP1_ribose_binding Pe 89.1 11 0.00024 30.7 12.1 80 55-136 2-86 (268)
94 cd01541 PBP1_AraR Ligand-bindi 89.0 12 0.00025 30.9 11.9 80 55-136 2-89 (273)
95 TIGR00147 lipid kinase, YegS/R 88.8 2.4 5.2E-05 36.8 8.0 83 54-140 3-93 (293)
96 cd06318 PBP1_ABC_sugar_binding 88.3 5.9 0.00013 32.8 9.7 81 54-136 1-86 (282)
97 PF00763 THF_DHG_CYH: Tetrahyd 87.8 2.5 5.4E-05 32.8 6.7 53 54-106 32-85 (117)
98 cd06321 PBP1_ABC_sugar_binding 87.6 5.9 0.00013 32.7 9.3 82 55-136 2-88 (271)
99 TIGR02189 GlrX-like_plant Glut 87.6 2.2 4.7E-05 32.0 6.1 74 54-153 9-83 (99)
100 PRK10481 hypothetical protein; 87.6 5.4 0.00012 34.8 9.3 80 53-135 130-211 (224)
101 PF00532 Peripla_BP_1: Peripla 87.4 18 0.00039 31.2 13.8 111 53-182 2-117 (279)
102 cd06300 PBP1_ABC_sugar_binding 87.4 6.2 0.00013 32.6 9.3 84 54-137 1-92 (272)
103 cd01575 PBP1_GntR Ligand-bindi 87.3 14 0.00031 29.9 12.8 78 55-136 2-84 (268)
104 cd06310 PBP1_ABC_sugar_binding 87.2 15 0.00033 30.1 12.0 83 54-136 1-88 (273)
105 cd03027 GRX_DEP Glutaredoxin ( 87.0 5.6 0.00012 27.3 7.5 32 54-87 2-33 (73)
106 cd06296 PBP1_CatR_like Ligand- 86.9 16 0.00034 29.9 12.8 78 55-136 2-84 (270)
107 cd06320 PBP1_allose_binding Pe 86.2 6.4 0.00014 32.5 8.8 84 54-137 1-89 (275)
108 TIGR02955 TMAO_TorT TMAO reduc 86.2 20 0.00043 30.5 12.5 82 54-135 1-86 (295)
109 cd01542 PBP1_TreR_like Ligand- 86.2 13 0.00029 30.2 10.5 78 55-136 2-84 (259)
110 PRK00861 putative lipid kinase 85.6 3.5 7.5E-05 36.1 7.2 74 60-138 14-88 (300)
111 PRK10014 DNA-binding transcrip 85.5 23 0.00049 30.5 14.6 82 52-136 64-150 (342)
112 cd01538 PBP1_ABC_xylose_bindin 85.4 13 0.00027 31.5 10.4 80 55-136 2-86 (288)
113 cd01988 Na_H_Antiporter_C The 85.3 6 0.00013 28.9 7.4 53 66-121 56-108 (132)
114 COG0695 GrxC Glutaredoxin and 85.2 3.5 7.7E-05 29.7 5.9 41 61-102 7-47 (80)
115 TIGR02180 GRX_euk Glutaredoxin 85.2 3.6 7.8E-05 28.3 5.8 69 61-153 5-76 (84)
116 cd06292 PBP1_LacI_like_10 Liga 84.8 20 0.00044 29.4 12.1 80 55-136 2-89 (273)
117 PF00462 Glutaredoxin: Glutare 84.8 3 6.5E-05 27.6 5.1 44 63-108 7-50 (60)
118 COG1597 LCB5 Sphingosine kinas 84.1 5.6 0.00012 35.5 8.0 76 60-139 14-91 (301)
119 PRK10703 DNA-binding transcrip 83.9 27 0.00059 30.1 13.7 81 52-136 59-145 (341)
120 TIGR01481 ccpA catabolite cont 83.3 28 0.00061 29.7 13.1 82 52-136 59-144 (329)
121 cd06290 PBP1_LacI_like_9 Ligan 82.2 26 0.00056 28.6 12.7 108 55-181 2-113 (265)
122 cd00578 L-fuc_L-ara-isomerases 82.1 21 0.00046 33.2 11.2 85 53-139 1-97 (452)
123 cd06308 PBP1_sensor_kinase_lik 82.0 18 0.00038 29.9 9.6 81 54-136 1-87 (270)
124 cd00764 Eukaryotic_PFK Phospho 81.8 8.8 0.00019 39.1 9.1 86 53-139 390-517 (762)
125 cd00860 ThrRS_anticodon ThrRS 81.5 9.9 0.00021 26.5 6.9 59 54-117 3-61 (91)
126 PF10096 DUF2334: Uncharacteri 81.4 6.1 0.00013 34.3 6.9 51 62-112 12-73 (243)
127 cd06293 PBP1_LacI_like_11 Liga 81.2 29 0.00063 28.5 12.8 78 55-136 2-84 (269)
128 cd06284 PBP1_LacI_like_6 Ligan 81.0 28 0.00061 28.2 12.4 79 55-136 2-83 (267)
129 PRK10310 PTS system galactitol 80.9 15 0.00032 27.4 8.0 71 54-140 4-77 (94)
130 cd06289 PBP1_MalI_like Ligand- 80.7 29 0.00062 28.2 12.4 80 55-136 2-85 (268)
131 PRK09526 lacI lac repressor; R 80.7 36 0.00078 29.3 14.2 84 52-136 63-150 (342)
132 PRK13951 bifunctional shikimat 80.5 3.7 8E-05 39.3 5.7 52 88-139 215-272 (488)
133 cd01540 PBP1_arabinose_binding 80.2 16 0.00034 30.4 8.9 80 54-136 1-85 (289)
134 cd06281 PBP1_LacI_like_5 Ligan 80.1 32 0.00069 28.3 11.9 79 55-136 2-85 (269)
135 cd01536 PBP1_ABC_sugar_binding 79.5 31 0.00066 27.7 12.5 81 54-136 1-86 (267)
136 cd06302 PBP1_LsrB_Quorum_Sensi 79.2 24 0.00053 30.0 9.9 81 54-136 1-87 (298)
137 PRK11303 DNA-binding transcrip 79.0 40 0.00086 28.8 13.0 82 52-136 61-147 (328)
138 TIGR01205 D_ala_D_alaTIGR D-al 79.0 6.7 0.00015 34.0 6.4 84 54-140 1-99 (315)
139 KOG3857 Alcohol dehydrogenase, 78.8 8.6 0.00019 36.5 7.3 119 53-179 71-248 (465)
140 cd06301 PBP1_rhizopine_binding 78.8 35 0.00075 28.0 12.3 80 54-136 1-87 (272)
141 PRK10423 transcriptional repre 78.7 40 0.00087 28.7 12.9 83 52-136 56-142 (327)
142 PF01761 DHQ_synthase: 3-dehyd 78.5 3.8 8.3E-05 36.2 4.8 51 89-139 8-64 (260)
143 cd06274 PBP1_FruR Ligand bindi 78.3 36 0.00078 27.8 12.6 78 55-136 2-84 (264)
144 PLN02958 diacylglycerol kinase 78.0 31 0.00068 33.0 11.1 73 53-129 112-189 (481)
145 cd06267 PBP1_LacI_sugar_bindin 77.9 33 0.00072 27.3 13.2 81 55-137 2-85 (264)
146 cd01545 PBP1_SalR Ligand-bindi 77.5 37 0.00081 27.6 12.5 81 55-137 2-87 (270)
147 cd06277 PBP1_LacI_like_1 Ligan 77.1 39 0.00085 27.7 12.0 68 64-136 17-86 (268)
148 cd03418 GRX_GRXb_1_3_like Glut 76.9 13 0.00028 25.1 6.2 37 63-101 8-44 (75)
149 cd06322 PBP1_ABC_sugar_binding 76.3 37 0.0008 27.8 9.8 81 55-137 2-87 (267)
150 PRK09492 treR trehalose repres 76.1 47 0.001 28.1 12.2 61 52-114 62-125 (315)
151 cd06315 PBP1_ABC_sugar_binding 76.1 27 0.00058 29.3 9.1 81 54-136 2-87 (280)
152 PRK10076 pyruvate formate lyas 75.9 17 0.00037 31.1 7.9 58 54-112 133-211 (213)
153 cd06295 PBP1_CelR Ligand bindi 75.8 43 0.00094 27.5 12.9 81 52-138 3-95 (275)
154 PRK12361 hypothetical protein; 75.8 10 0.00022 36.3 7.2 82 53-139 243-330 (547)
155 cd06299 PBP1_LacI_like_13 Liga 75.6 42 0.00092 27.3 12.8 78 55-136 2-84 (265)
156 PRK10355 xylF D-xylose transpo 75.5 57 0.0012 28.7 12.8 84 51-136 24-112 (330)
157 PF06258 Mito_fiss_Elm1: Mitoc 75.1 27 0.00058 31.6 9.3 73 51-126 145-227 (311)
158 PRK03708 ppnK inorganic polyph 75.1 5.2 0.00011 35.5 4.7 86 54-140 2-90 (277)
159 PRK10824 glutaredoxin-4; Provi 75.0 18 0.00039 28.3 7.2 74 53-153 15-92 (115)
160 cd06312 PBP1_ABC_sugar_binding 74.9 21 0.00046 29.5 8.1 81 54-136 1-88 (271)
161 cd05564 PTS_IIB_chitobiose_lic 74.8 6.2 0.00014 29.4 4.4 82 55-146 2-88 (96)
162 TIGR03568 NeuC_NnaA UDP-N-acet 74.8 23 0.00051 32.1 9.0 32 105-136 91-123 (365)
163 PRK11175 universal stress prot 74.7 23 0.00049 30.3 8.5 67 70-139 73-147 (305)
164 cd04740 DHOD_1B_like Dihydroor 74.7 57 0.0012 28.4 11.4 36 53-90 91-127 (296)
165 PRK14987 gluconate operon tran 74.7 54 0.0012 28.1 13.1 81 52-136 63-148 (331)
166 COG1609 PurR Transcriptional r 74.3 65 0.0014 28.8 15.4 128 50-195 56-199 (333)
167 cd05566 PTS_IIB_galactitol PTS 74.2 29 0.00062 24.7 8.4 70 54-140 2-73 (89)
168 TIGR00236 wecB UDP-N-acetylglu 73.8 12 0.00025 33.1 6.6 78 53-136 30-116 (365)
169 PRK13059 putative lipid kinase 73.7 16 0.00035 32.1 7.4 74 60-138 13-90 (295)
170 PRK14569 D-alanyl-alanine synt 73.5 23 0.00051 31.0 8.4 81 53-141 4-93 (296)
171 cd06306 PBP1_TorT-like TorT-li 73.5 39 0.00084 28.1 9.4 81 54-136 1-87 (268)
172 cd01452 VWA_26S_proteasome_sub 73.5 32 0.0007 29.0 8.9 53 53-105 108-163 (187)
173 TIGR00853 pts-lac PTS system, 73.2 6.6 0.00014 29.4 4.2 78 53-140 4-85 (95)
174 cd06278 PBP1_LacI_like_2 Ligan 73.0 49 0.0011 26.8 12.3 77 55-136 2-83 (266)
175 cd06319 PBP1_ABC_sugar_binding 72.7 41 0.00089 27.5 9.3 81 54-136 1-86 (277)
176 PRK12757 cell division protein 72.3 32 0.00069 30.8 8.9 65 53-117 183-256 (256)
177 PRK10936 TMAO reductase system 72.2 69 0.0015 28.2 13.0 85 52-136 46-134 (343)
178 PF13528 Glyco_trans_1_3: Glyc 71.9 30 0.00064 29.6 8.5 76 52-140 192-280 (318)
179 cd01574 PBP1_LacI Ligand-bindi 71.8 53 0.0011 26.7 12.5 81 55-136 2-85 (264)
180 cd06309 PBP1_YtfQ_like Peripla 71.6 43 0.00092 27.6 9.2 80 55-136 2-86 (273)
181 TIGR00736 nifR3_rel_arch TIM-b 71.6 36 0.00078 29.7 9.0 85 64-153 119-211 (231)
182 PF01297 TroA: Periplasmic sol 71.4 25 0.00053 29.9 7.9 65 74-139 163-231 (256)
183 TIGR00236 wecB UDP-N-acetylglu 71.4 22 0.00047 31.4 7.7 59 54-115 2-61 (365)
184 PRK13057 putative lipid kinase 71.3 26 0.00056 30.5 8.1 70 66-140 13-84 (287)
185 PRK01966 ddl D-alanyl-alanine 71.1 6.5 0.00014 35.1 4.4 31 52-82 3-38 (333)
186 cd00861 ProRS_anticodon_short 70.9 12 0.00027 26.4 5.1 58 54-116 3-63 (94)
187 cd00763 Bacterial_PFK Phosphof 70.8 8 0.00017 35.2 4.9 47 92-139 77-124 (317)
188 cd02911 arch_FMN Archeal FMN-b 70.5 36 0.00078 29.3 8.7 51 64-116 124-174 (233)
189 PRK02645 ppnK inorganic polyph 70.4 12 0.00026 33.6 6.0 82 53-138 4-89 (305)
190 PRK05234 mgsA methylglyoxal sy 69.8 57 0.0012 26.3 12.4 100 53-163 4-112 (142)
191 cd06314 PBP1_tmGBP Periplasmic 69.8 62 0.0013 26.7 12.7 80 55-136 2-85 (271)
192 cd06317 PBP1_ABC_sugar_binding 69.6 60 0.0013 26.5 10.2 80 55-136 2-87 (275)
193 TIGR02634 xylF D-xylose ABC tr 69.2 30 0.00065 29.7 8.0 78 56-136 2-85 (302)
194 cd00858 GlyRS_anticodon GlyRS 69.1 23 0.0005 27.0 6.5 59 53-117 27-87 (121)
195 PRK09230 cytosine deaminase; P 69.0 41 0.00088 31.3 9.3 99 65-168 194-315 (426)
196 PF03129 HGTP_anticodon: Antic 69.0 13 0.00028 26.5 4.8 56 55-115 2-60 (94)
197 PRK14190 bifunctional 5,10-met 68.8 24 0.00053 31.8 7.5 54 53-106 34-88 (284)
198 cd01422 MGS Methylglyoxal synt 68.8 51 0.0011 25.3 9.6 95 57-163 3-107 (115)
199 PRK01231 ppnK inorganic polyph 68.3 9 0.0002 34.4 4.7 86 53-139 5-95 (295)
200 cd07943 DRE_TIM_HOA 4-hydroxy- 68.3 19 0.00041 31.1 6.6 67 55-122 101-168 (263)
201 cd06316 PBP1_ABC_sugar_binding 68.1 47 0.001 27.9 8.8 82 54-136 1-87 (294)
202 PRK11175 universal stress prot 68.0 20 0.00044 30.6 6.7 67 70-140 227-302 (305)
203 cd06353 PBP1_BmpA_Med_like Per 67.7 34 0.00074 29.3 8.0 57 57-115 5-65 (258)
204 PRK15408 autoinducer 2-binding 67.6 92 0.002 27.8 13.1 83 53-137 24-112 (336)
205 PRK03202 6-phosphofructokinase 67.5 8.1 0.00018 35.2 4.3 48 92-139 78-125 (320)
206 cd00532 MGS-like MGS-like doma 67.4 51 0.0011 24.8 9.1 92 57-162 3-104 (112)
207 PRK11835 hypothetical protein; 67.2 13 0.00028 29.6 4.7 69 1-84 3-74 (114)
208 cd06324 PBP1_ABC_sugar_binding 66.4 67 0.0015 27.4 9.6 79 55-136 2-88 (305)
209 cd00859 HisRS_anticodon HisRS 66.3 37 0.00081 22.9 6.7 57 54-115 3-59 (91)
210 PRK14177 bifunctional 5,10-met 66.3 20 0.00043 32.4 6.5 54 53-106 35-89 (284)
211 PRK07535 methyltetrahydrofolat 66.3 93 0.002 27.4 11.2 113 65-196 137-261 (261)
212 cd00738 HGTP_anticodon HGTP an 66.2 31 0.00066 24.0 6.3 58 54-116 3-63 (94)
213 PRK10329 glutaredoxin-like pro 66.2 36 0.00079 24.4 6.7 39 58-99 5-43 (81)
214 TIGR02181 GRX_bact Glutaredoxi 66.0 25 0.00055 24.1 5.8 65 62-153 6-71 (79)
215 PRK08862 short chain dehydroge 66.0 38 0.00082 28.2 7.8 25 92-116 65-92 (227)
216 cd05212 NAD_bind_m-THF_DH_Cycl 65.7 14 0.00029 29.8 4.8 56 53-120 29-84 (140)
217 cd05567 PTS_IIB_mannitol PTS_I 65.7 48 0.001 23.8 7.9 70 54-139 2-74 (87)
218 PF00781 DAGK_cat: Diacylglyce 65.6 26 0.00056 26.7 6.2 82 68-156 17-104 (130)
219 COG1879 RbsB ABC-type sugar tr 65.3 77 0.0017 27.3 9.8 86 53-138 34-124 (322)
220 COG4126 Hydantoin racemase [Am 65.3 8.1 0.00018 34.1 3.7 52 83-135 145-202 (230)
221 PRK10116 universal stress prot 65.0 56 0.0012 24.4 8.5 62 76-140 74-141 (142)
222 TIGR02482 PFKA_ATP 6-phosphofr 64.9 11 0.00024 34.0 4.7 47 92-139 76-124 (301)
223 cd07025 Peptidase_S66 LD-Carbo 64.7 24 0.00051 31.1 6.6 65 56-120 2-75 (282)
224 PRK05867 short chain dehydroge 64.6 45 0.00098 27.5 7.9 45 53-103 9-53 (253)
225 cd01989 STK_N The N-terminal d 64.5 49 0.0011 24.9 7.6 50 70-122 69-118 (146)
226 PRK14188 bifunctional 5,10-met 64.4 25 0.00055 31.8 6.8 54 53-106 34-88 (296)
227 cd03174 DRE_TIM_metallolyase D 64.3 34 0.00073 28.8 7.2 47 64-110 113-162 (265)
228 PRK14172 bifunctional 5,10-met 64.1 35 0.00077 30.7 7.6 54 53-106 34-88 (278)
229 PRK14186 bifunctional 5,10-met 64.1 34 0.00074 31.1 7.6 54 53-106 34-88 (297)
230 cd03031 GRX_GRX_like Glutaredo 63.9 24 0.00052 28.7 6.0 28 63-90 14-41 (147)
231 cd03419 GRX_GRXh_1_2_like Glut 63.7 44 0.00095 22.7 6.8 68 62-153 7-75 (82)
232 cd06354 PBP1_BmpA_PnrA_like Pe 63.6 70 0.0015 26.7 9.0 80 54-136 1-87 (265)
233 TIGR03590 PseG pseudaminic aci 63.3 53 0.0012 28.6 8.5 30 53-83 171-201 (279)
234 TIGR02194 GlrX_NrdH Glutaredox 63.0 37 0.00079 23.2 6.0 36 59-97 4-39 (72)
235 PRK14179 bifunctional 5,10-met 62.7 41 0.00088 30.4 7.8 54 53-106 34-88 (284)
236 COG0589 UspA Universal stress 62.5 59 0.0013 23.8 8.8 72 65-139 73-153 (154)
237 cd03045 GST_N_Delta_Epsilon GS 62.4 13 0.00028 25.0 3.6 35 66-100 10-44 (74)
238 PRK09864 putative peptidase; P 62.2 97 0.0021 28.7 10.3 96 58-195 255-354 (356)
239 TIGR02667 moaB_proteo molybden 62.0 67 0.0014 26.1 8.3 78 52-130 4-90 (163)
240 cd06313 PBP1_ABC_sugar_binding 62.0 55 0.0012 27.3 8.1 69 66-136 16-86 (272)
241 PRK14171 bifunctional 5,10-met 61.9 45 0.00098 30.2 7.9 54 53-106 34-88 (288)
242 PRK14169 bifunctional 5,10-met 61.7 41 0.0009 30.4 7.6 54 53-106 32-86 (282)
243 cd06341 PBP1_ABC_ligand_bindin 61.6 95 0.0021 26.7 9.7 72 66-137 18-97 (341)
244 PRK10401 DNA-binding transcrip 61.6 1.1E+02 0.0023 26.5 14.4 62 52-115 59-123 (346)
245 PRK09548 PTS system ascorbate- 61.5 26 0.00056 35.0 6.8 57 53-118 507-565 (602)
246 cd06270 PBP1_GalS_like Ligand 61.2 90 0.002 25.5 12.7 59 55-115 2-63 (268)
247 PF11965 DUF3479: Domain of un 61.1 36 0.00079 28.4 6.7 84 54-139 2-94 (164)
248 PRK14571 D-alanyl-alanine synt 61.0 42 0.00092 29.1 7.4 79 54-140 2-89 (299)
249 PRK14180 bifunctional 5,10-met 60.9 36 0.00078 30.7 7.1 54 53-106 33-87 (282)
250 TIGR02478 6PF1K_euk 6-phosphof 60.7 29 0.00062 35.3 7.1 86 53-139 390-517 (745)
251 cd06286 PBP1_CcpB_like Ligand- 60.6 90 0.002 25.3 12.3 59 55-115 2-63 (260)
252 COG0205 PfkA 6-phosphofructoki 60.6 15 0.00032 34.1 4.7 48 92-139 79-127 (347)
253 PRK15395 methyl-galactoside AB 60.5 1.1E+02 0.0023 26.9 9.9 84 52-136 24-112 (330)
254 PRK08195 4-hyroxy-2-oxovalerat 60.4 43 0.00093 30.6 7.6 54 58-111 107-161 (337)
255 PF02954 HTH_8: Bacterial regu 60.4 6.2 0.00013 25.1 1.6 20 174-193 23-42 (42)
256 cd06291 PBP1_Qymf_like Ligand 60.3 92 0.002 25.3 10.2 77 55-136 2-81 (265)
257 cd04509 PBP1_ABC_transporter_G 60.3 89 0.0019 25.2 9.6 60 79-139 38-100 (299)
258 cd03813 GT1_like_3 This family 60.2 1.2E+02 0.0026 28.2 10.7 22 170-191 428-450 (475)
259 cd06300 PBP1_ABC_sugar_binding 60.2 95 0.0021 25.4 9.4 66 51-117 124-195 (272)
260 PRK14191 bifunctional 5,10-met 60.2 40 0.00088 30.5 7.3 53 54-106 34-87 (285)
261 cd03059 GST_N_SspA GST_N famil 60.1 19 0.00041 24.0 4.1 28 63-90 7-34 (73)
262 PRK15005 universal stress prot 59.9 52 0.0011 24.6 7.0 60 73-137 74-144 (144)
263 PF01177 Asp_Glu_race: Asp/Glu 59.8 25 0.00054 28.5 5.5 82 55-138 1-97 (216)
264 PRK14176 bifunctional 5,10-met 59.7 52 0.0011 29.8 7.9 54 53-106 40-94 (287)
265 PF02006 DUF137: Protein of un 59.6 26 0.00056 29.9 5.6 73 68-142 20-101 (178)
266 PRK05286 dihydroorotate dehydr 59.6 70 0.0015 29.1 8.8 55 62-117 188-248 (344)
267 cd05017 SIS_PGI_PMI_1 The memb 59.4 73 0.0016 23.9 10.5 63 84-152 47-110 (119)
268 TIGR01037 pyrD_sub1_fam dihydr 59.4 69 0.0015 28.0 8.5 49 63-114 140-189 (300)
269 PRK14177 bifunctional 5,10-met 59.1 16 0.00035 33.0 4.6 50 84-139 184-233 (284)
270 PRK14167 bifunctional 5,10-met 58.9 40 0.00087 30.6 7.1 53 54-106 34-87 (297)
271 PRK14189 bifunctional 5,10-met 58.9 47 0.001 30.0 7.4 54 53-106 34-88 (285)
272 PRK14174 bifunctional 5,10-met 58.8 44 0.00095 30.3 7.3 54 53-106 33-87 (295)
273 TIGR03566 FMN_reduc_MsuE FMN r 58.7 67 0.0014 25.8 7.8 83 54-140 1-111 (174)
274 TIGR01481 ccpA catabolite cont 58.7 83 0.0018 26.8 8.8 126 46-179 170-302 (329)
275 cd03129 GAT1_Peptidase_E_like 58.6 1E+02 0.0023 25.4 10.0 69 52-125 29-98 (210)
276 PRK14173 bifunctional 5,10-met 58.5 48 0.0011 30.0 7.5 54 53-106 31-85 (287)
277 PRK14184 bifunctional 5,10-met 58.4 35 0.00076 30.9 6.6 54 53-106 33-87 (286)
278 PF01380 SIS: SIS domain SIS d 58.4 71 0.0015 23.4 7.7 82 54-141 6-109 (131)
279 PF10137 TIR-like: Predicted n 58.3 65 0.0014 25.6 7.4 57 55-113 2-58 (125)
280 COG0381 WecB UDP-N-acetylgluco 58.2 66 0.0014 30.5 8.5 84 54-137 5-123 (383)
281 COG3414 SgaB Phosphotransferas 58.1 49 0.0011 25.0 6.4 59 54-125 3-63 (93)
282 cd06294 PBP1_ycjW_transcriptio 58.0 1E+02 0.0022 25.0 12.8 66 66-136 21-89 (270)
283 PF01522 Polysacc_deac_1: Poly 57.8 31 0.00067 25.2 5.3 61 53-117 5-65 (123)
284 PHA03050 glutaredoxin; Provisi 57.6 51 0.0011 25.1 6.5 74 53-153 13-91 (108)
285 PRK10222 PTS system L-ascorbat 57.4 40 0.00086 24.8 5.7 42 69-121 5-48 (85)
286 cd00363 PFK Phosphofructokinas 57.0 14 0.0003 33.8 3.8 47 93-139 78-130 (338)
287 cd00293 USP_Like Usp: Universa 56.9 23 0.0005 24.9 4.3 44 78-125 68-111 (130)
288 PRK09982 universal stress prot 56.7 26 0.00057 26.9 4.9 44 96-140 92-141 (142)
289 PRK14193 bifunctional 5,10-met 56.5 32 0.00068 31.1 6.0 53 54-106 35-88 (284)
290 cd03060 GST_N_Omega_like GST_N 56.3 26 0.00057 23.6 4.3 28 63-90 7-34 (71)
291 PRK14168 bifunctional 5,10-met 56.3 57 0.0012 29.7 7.6 54 53-106 35-89 (297)
292 cd01987 USP_OKCHK USP domain i 56.1 65 0.0014 23.5 6.8 60 66-130 49-108 (124)
293 PRK14178 bifunctional 5,10-met 56.0 42 0.00091 30.2 6.7 54 53-106 28-82 (279)
294 COG2086 FixA Electron transfer 55.4 1.2E+02 0.0027 27.0 9.5 80 54-137 58-145 (260)
295 PF03853 YjeF_N: YjeF-related 55.3 85 0.0018 25.4 7.9 61 50-110 23-84 (169)
296 PRK14192 bifunctional 5,10-met 55.2 68 0.0015 28.7 7.8 61 53-113 35-98 (283)
297 PRK14187 bifunctional 5,10-met 55.2 69 0.0015 29.1 7.9 54 53-106 34-88 (294)
298 PRK14181 bifunctional 5,10-met 55.0 35 0.00076 30.9 6.0 54 53-106 28-82 (287)
299 PTZ00286 6-phospho-1-fructokin 55.0 22 0.00048 34.2 5.0 89 50-139 85-214 (459)
300 PRK06830 diphosphate--fructose 54.8 21 0.00046 34.2 4.8 88 50-139 78-210 (443)
301 PRK07109 short chain dehydroge 54.7 88 0.0019 27.7 8.5 25 53-79 8-32 (334)
302 cd06282 PBP1_GntR_like_2 Ligan 54.7 1.1E+02 0.0025 24.6 10.9 79 55-136 2-85 (266)
303 PF02882 THF_DHG_CYH_C: Tetrah 54.5 15 0.00033 30.2 3.4 76 53-140 36-111 (160)
304 TIGR01506 ribC_arch riboflavin 54.5 33 0.00071 28.4 5.3 106 63-182 10-130 (151)
305 cd03029 GRX_hybridPRX5 Glutare 54.4 58 0.0013 22.0 5.8 28 61-88 7-34 (72)
306 PLN02884 6-phosphofructokinase 54.4 21 0.00046 33.8 4.7 90 49-139 50-181 (411)
307 PF04028 DUF374: Domain of unk 54.3 81 0.0018 22.8 7.7 59 53-116 10-68 (74)
308 PF02350 Epimerase_2: UDP-N-ac 54.3 28 0.00062 31.5 5.4 81 54-137 11-98 (346)
309 PF05036 SPOR: Sporulation rel 54.3 62 0.0013 21.5 6.4 58 54-112 4-74 (76)
310 PRK13761 hypothetical protein; 54.3 32 0.0007 30.7 5.5 84 55-142 71-162 (248)
311 cd03522 MoeA_like MoeA_like. T 54.2 91 0.002 28.4 8.6 68 51-120 158-232 (312)
312 cd05565 PTS_IIB_lactose PTS_II 54.1 45 0.00098 25.4 5.7 76 55-139 3-81 (99)
313 PLN02251 pyrophosphate-depende 54.0 19 0.00042 35.5 4.5 48 92-139 175-228 (568)
314 PRK14175 bifunctional 5,10-met 54.0 57 0.0012 29.5 7.2 54 53-106 34-88 (286)
315 PRK14182 bifunctional 5,10-met 53.7 68 0.0015 29.0 7.6 54 53-106 32-86 (282)
316 COG3340 PepE Peptidase E [Amin 53.5 29 0.00063 30.6 5.0 59 52-116 32-93 (224)
317 PRK10792 bifunctional 5,10-met 53.4 41 0.00089 30.4 6.2 54 53-106 35-89 (285)
318 PRK14187 bifunctional 5,10-met 53.2 21 0.00046 32.4 4.4 67 67-139 143-234 (294)
319 PRK14166 bifunctional 5,10-met 53.2 37 0.00081 30.6 5.9 53 54-106 33-86 (282)
320 TIGR02190 GlrX-dom Glutaredoxi 53.1 63 0.0014 22.5 6.0 34 52-87 7-40 (79)
321 PRK14194 bifunctional 5,10-met 53.0 60 0.0013 29.6 7.2 54 53-106 35-89 (301)
322 TIGR03217 4OH_2_O_val_ald 4-hy 52.8 76 0.0017 28.9 7.9 57 54-111 103-160 (333)
323 PRK14180 bifunctional 5,10-met 52.7 21 0.00045 32.3 4.2 50 84-139 183-232 (282)
324 PRK06886 hypothetical protein; 52.7 1.8E+02 0.004 26.4 10.6 99 65-168 161-282 (329)
325 PRK14071 6-phosphofructokinase 52.6 20 0.00043 33.1 4.2 45 94-139 94-140 (360)
326 KOG1208 Dehydrogenases with di 52.6 43 0.00092 30.4 6.2 27 52-80 34-60 (314)
327 cd00570 GST_N_family Glutathio 52.4 34 0.00074 21.4 4.2 30 65-94 9-38 (71)
328 cd07944 DRE_TIM_HOA_like 4-hyd 52.2 86 0.0019 27.4 7.9 54 58-111 101-155 (266)
329 COG2984 ABC-type uncharacteriz 52.2 2E+02 0.0043 26.7 10.8 28 156-184 252-282 (322)
330 cd06353 PBP1_BmpA_Med_like Per 52.1 1.2E+02 0.0025 26.1 8.6 85 50-139 118-209 (258)
331 TIGR02483 PFK_mixed phosphofru 51.9 24 0.00053 32.1 4.6 46 94-139 81-126 (324)
332 PRK09701 D-allose transporter 51.8 1.6E+02 0.0034 25.4 13.8 85 52-136 24-113 (311)
333 PF03358 FMN_red: NADPH-depend 51.7 99 0.0021 23.7 7.4 50 54-105 2-70 (152)
334 cd07062 Peptidase_S66_mccF_lik 51.5 66 0.0014 28.7 7.2 67 54-120 2-79 (308)
335 PRK14168 bifunctional 5,10-met 51.4 25 0.00053 32.0 4.5 50 84-139 190-239 (297)
336 PRK14170 bifunctional 5,10-met 51.4 61 0.0013 29.3 6.9 54 53-106 33-87 (284)
337 cd03048 GST_N_Ure2p_like GST_N 51.2 35 0.00076 23.5 4.4 31 58-90 4-34 (81)
338 PLN02616 tetrahydrofolate dehy 51.2 22 0.00048 33.3 4.2 67 67-139 214-305 (364)
339 PRK00696 sucC succinyl-CoA syn 51.1 2E+02 0.0043 26.3 12.1 115 52-179 256-385 (388)
340 PRK02155 ppnK NAD(+)/NADH kina 50.8 37 0.0008 30.4 5.5 86 53-139 6-96 (291)
341 cd06325 PBP1_ABC_uncharacteriz 50.7 1.4E+02 0.003 24.5 8.8 69 66-136 15-87 (281)
342 KOG1752 Glutaredoxin and relat 50.4 61 0.0013 25.0 5.9 48 54-103 15-62 (104)
343 PRK11041 DNA-binding transcrip 50.3 61 0.0013 27.2 6.5 125 46-179 146-279 (309)
344 COG1619 LdcA Uncharacterized p 50.2 99 0.0021 28.3 8.2 83 54-136 12-109 (313)
345 cd05014 SIS_Kpsf KpsF-like pro 50.1 1E+02 0.0022 22.8 8.6 67 57-123 4-90 (128)
346 TIGR00677 fadh2_euk methylenet 50.1 63 0.0014 28.7 6.8 66 54-119 32-99 (281)
347 TIGR01133 murG undecaprenyldip 49.7 1.2E+02 0.0025 26.0 8.2 38 98-135 81-118 (348)
348 cd05008 SIS_GlmS_GlmD_1 SIS (S 49.5 1E+02 0.0023 22.7 8.7 77 57-138 3-99 (126)
349 PRK14453 chloramphenicol/florf 49.5 80 0.0017 29.1 7.6 64 54-117 252-329 (347)
350 PRK14467 ribosomal RNA large s 49.3 91 0.002 28.8 7.9 60 54-113 256-324 (348)
351 PRK07259 dihydroorotate dehydr 49.0 1.3E+02 0.0029 26.3 8.6 33 54-88 94-128 (301)
352 cd03041 GST_N_2GST_N GST_N fam 48.9 51 0.0011 22.7 4.9 24 65-88 10-33 (77)
353 cd00758 MoCF_BD MoCF_BD: molyb 48.8 62 0.0013 25.0 5.8 65 68-134 21-89 (133)
354 PRK10927 essential cell divisi 48.6 1.4E+02 0.0031 27.7 8.9 64 53-116 246-318 (319)
355 cd04738 DHOD_2_like Dihydrooro 48.5 1.4E+02 0.0029 26.9 8.7 53 62-115 179-237 (327)
356 PRK10499 PTS system N,N'-diace 48.4 72 0.0016 24.3 6.0 85 54-147 5-91 (106)
357 PF13989 YejG: YejG-like prote 48.3 36 0.00079 26.7 4.3 68 2-84 1-71 (106)
358 PRK14182 bifunctional 5,10-met 48.3 29 0.00062 31.4 4.3 50 84-139 182-231 (282)
359 PF02514 CobN-Mg_chel: CobN/Ma 47.9 1.1E+02 0.0024 32.6 9.1 89 51-139 70-168 (1098)
360 PLN03028 pyrophosphate--fructo 47.8 28 0.0006 34.8 4.5 48 92-139 158-211 (610)
361 PRK14183 bifunctional 5,10-met 47.7 56 0.0012 29.5 6.1 54 53-106 33-87 (281)
362 PLN02516 methylenetetrahydrofo 47.7 65 0.0014 29.3 6.6 54 53-106 41-95 (299)
363 PRK13394 3-hydroxybutyrate deh 47.6 1.4E+02 0.003 24.4 8.1 26 53-80 7-32 (262)
364 cd01985 ETF The electron trans 47.6 1.5E+02 0.0032 23.8 8.3 78 54-135 38-120 (181)
365 PTZ00062 glutaredoxin; Provisi 47.5 1.1E+02 0.0024 26.2 7.6 74 53-153 113-190 (204)
366 TIGR02470 sucr_synth sucrose s 47.4 3.4E+02 0.0074 28.1 14.8 112 67-192 604-722 (784)
367 cd06288 PBP1_sucrose_transcrip 47.3 1.5E+02 0.0033 24.0 12.3 79 55-136 2-84 (269)
368 PRK14072 6-phosphofructokinase 47.3 26 0.00057 33.1 4.1 47 92-139 88-141 (416)
369 PRK14185 bifunctional 5,10-met 46.9 58 0.0013 29.6 6.1 54 53-106 33-87 (293)
370 cd02977 ArsC_family Arsenate R 46.6 45 0.00098 24.6 4.6 39 63-101 7-46 (105)
371 PF01012 ETF: Electron transfe 46.6 47 0.001 26.3 4.9 108 53-163 34-157 (164)
372 PF02016 Peptidase_S66: LD-car 46.6 68 0.0015 28.4 6.4 82 55-137 1-98 (284)
373 cd02811 IDI-2_FMN Isopentenyl- 46.0 2.3E+02 0.0049 25.6 11.0 49 61-113 159-208 (326)
374 PLN02616 tetrahydrofolate dehy 45.9 99 0.0021 29.1 7.6 54 53-106 105-159 (364)
375 PRK13523 NADPH dehydrogenase N 45.9 1.1E+02 0.0023 28.0 7.7 38 79-116 207-249 (337)
376 PRK07085 diphosphate--fructose 45.9 30 0.00064 34.1 4.3 48 92-139 149-202 (555)
377 cd07937 DRE_TIM_PC_TC_5S Pyruv 45.9 1.2E+02 0.0026 26.6 7.8 66 54-120 106-174 (275)
378 PRK14186 bifunctional 5,10-met 45.8 32 0.00069 31.3 4.3 63 67-139 170-232 (297)
379 cd07948 DRE_TIM_HCS Saccharomy 45.6 1.2E+02 0.0026 26.6 7.8 45 67-111 113-158 (262)
380 PF02608 Bmp: Basic membrane p 45.5 32 0.0007 30.3 4.2 93 50-142 124-225 (306)
381 TIGR02477 PFKA_PPi diphosphate 45.4 31 0.00066 33.9 4.4 48 92-139 146-199 (539)
382 cd06303 PBP1_LuxPQ_Quorum_Sens 45.3 1.8E+02 0.0039 24.2 13.1 63 54-116 1-69 (280)
383 PRK14172 bifunctional 5,10-met 45.3 34 0.00073 30.8 4.3 62 68-139 171-232 (278)
384 cd06332 PBP1_aromatic_compound 45.3 1.7E+02 0.0038 24.6 8.5 70 66-136 18-95 (333)
385 PRK08085 gluconate 5-dehydroge 45.0 1.3E+02 0.0028 24.7 7.6 45 53-103 9-53 (254)
386 PRK11041 DNA-binding transcrip 44.8 1.9E+02 0.004 24.3 13.3 60 52-113 35-97 (309)
387 cd01019 ZnuA Zinc binding prot 44.8 1.2E+02 0.0027 26.5 7.8 125 6-139 120-260 (286)
388 PLN02204 diacylglycerol kinase 44.7 67 0.0014 32.2 6.6 71 54-128 161-238 (601)
389 PRK14572 D-alanyl-alanine synt 44.6 30 0.00064 31.1 3.9 87 54-141 3-125 (347)
390 cd02810 DHOD_DHPD_FMN Dihydroo 44.3 1.4E+02 0.003 25.8 7.9 63 52-116 99-171 (289)
391 PRK03692 putative UDP-N-acetyl 44.3 1.2E+02 0.0025 26.7 7.4 60 54-117 107-167 (243)
392 PRK10415 tRNA-dihydrouridine s 44.1 1.7E+02 0.0037 26.3 8.7 102 63-169 116-232 (321)
393 PLN02897 tetrahydrofolate dehy 44.1 93 0.002 29.0 7.1 54 53-106 88-142 (345)
394 PRK07572 cytosine deaminase; V 44.0 1.6E+02 0.0034 27.2 8.6 98 65-167 190-310 (426)
395 PLN02564 6-phosphofructokinase 44.0 42 0.0009 32.7 5.0 89 49-139 84-214 (484)
396 TIGR02405 trehalos_R_Ecol treh 44.0 2E+02 0.0044 24.4 12.8 61 52-114 59-122 (311)
397 cd00765 Pyrophosphate_PFK Phos 43.8 34 0.00075 33.7 4.4 48 92-139 151-204 (550)
398 PRK06139 short chain dehydroge 43.8 1.3E+02 0.0029 26.8 7.9 53 64-117 40-94 (330)
399 PRK12330 oxaloacetate decarbox 43.6 1.3E+02 0.0028 29.4 8.2 70 54-125 112-185 (499)
400 PRK07475 hypothetical protein; 43.3 78 0.0017 27.4 6.2 76 53-134 123-223 (245)
401 PRK10638 glutaredoxin 3; Provi 43.3 1.1E+02 0.0024 21.4 6.0 65 62-153 9-74 (83)
402 cd04795 SIS SIS domain. SIS (S 43.2 1E+02 0.0023 20.9 7.7 27 84-110 51-77 (87)
403 PF00682 HMGL-like: HMGL-like 43.1 1.1E+02 0.0023 25.6 6.8 60 54-113 82-156 (237)
404 TIGR00676 fadh2 5,10-methylene 42.9 1.1E+02 0.0024 26.7 7.2 52 68-119 46-98 (272)
405 PRK00061 ribH 6,7-dimethyl-8-r 42.7 82 0.0018 25.9 5.9 116 52-181 12-149 (154)
406 COG0532 InfB Translation initi 42.6 1E+02 0.0022 30.3 7.4 83 54-152 82-165 (509)
407 PRK07203 putative chlorohydrol 42.5 2.2E+02 0.0048 26.2 9.4 107 53-167 188-313 (442)
408 PRK00311 panB 3-methyl-2-oxobu 42.4 1.4E+02 0.0031 26.6 7.8 45 91-137 155-203 (264)
409 KOG0339 ATP-dependent RNA heli 42.3 76 0.0017 31.9 6.5 116 14-134 231-376 (731)
410 PRK06555 pyrophosphate--fructo 42.3 37 0.0008 32.2 4.3 46 94-139 99-150 (403)
411 cd03051 GST_N_GTT2_like GST_N 42.3 53 0.0011 21.5 4.0 24 66-89 10-33 (74)
412 KOG0725 Reductases with broad 42.2 1.4E+02 0.003 26.3 7.6 68 52-121 7-103 (270)
413 PRK05876 short chain dehydroge 42.2 1.5E+02 0.0032 25.2 7.7 10 108-117 84-93 (275)
414 PRK15395 methyl-galactoside AB 42.1 2.4E+02 0.0051 24.7 11.2 112 55-177 165-289 (330)
415 TIGR00737 nifR3_yhdG putative 42.0 1.9E+02 0.0041 25.7 8.6 87 63-153 114-212 (319)
416 PLN02516 methylenetetrahydrofo 42.0 38 0.00082 30.9 4.2 49 85-139 193-241 (299)
417 PRK09432 metF 5,10-methylenete 42.0 95 0.0021 27.8 6.7 53 65-117 67-120 (296)
418 PRK05437 isopentenyl pyrophosp 41.8 1.5E+02 0.0034 27.1 8.2 50 60-113 166-216 (352)
419 PF00534 Glycos_transf_1: Glyc 41.7 1.2E+02 0.0026 23.1 6.5 119 53-193 47-168 (172)
420 cd06268 PBP1_ABC_transporter_L 41.7 1.8E+02 0.004 23.3 7.9 59 78-136 37-96 (298)
421 cd03056 GST_N_4 GST_N family, 41.7 51 0.0011 21.7 3.9 24 66-89 10-33 (73)
422 PRK14170 bifunctional 5,10-met 41.6 44 0.00095 30.2 4.5 49 85-139 183-231 (284)
423 PRK15456 universal stress prot 41.5 1.2E+02 0.0027 22.8 6.5 39 97-136 95-141 (142)
424 PRK07063 short chain dehydroge 41.5 2E+02 0.0043 23.7 8.3 26 53-80 7-32 (260)
425 smart00046 DAGKc Diacylglycero 41.2 1.6E+02 0.0035 22.5 8.0 77 74-157 19-101 (124)
426 PRK02277 orotate phosphoribosy 41.2 70 0.0015 26.8 5.4 80 57-136 19-114 (200)
427 PRK10916 ADP-heptose:LPS hepto 41.1 63 0.0014 28.6 5.4 29 108-140 262-290 (348)
428 PRK08277 D-mannonate oxidoredu 40.8 1.5E+02 0.0032 24.8 7.4 26 53-80 10-35 (278)
429 cd06285 PBP1_LacI_like_7 Ligan 40.7 2E+02 0.0043 23.4 12.7 79 55-137 2-85 (265)
430 cd03036 ArsC_like Arsenate Red 40.7 61 0.0013 24.5 4.6 38 65-102 9-47 (111)
431 cd06271 PBP1_AglR_RafR_like Li 40.6 1.9E+02 0.0042 23.3 8.9 128 45-179 113-247 (268)
432 cd00537 MTHFR Methylenetetrahy 40.5 1.2E+02 0.0025 26.3 6.8 54 65-118 44-97 (274)
433 PRK05447 1-deoxy-D-xylulose 5- 40.4 1.5E+02 0.0032 28.1 7.9 21 108-128 92-112 (385)
434 PRK14166 bifunctional 5,10-met 40.3 45 0.00097 30.1 4.3 74 84-163 182-266 (282)
435 cd00408 DHDPS-like Dihydrodipi 40.1 2.3E+02 0.0051 24.2 8.7 22 92-113 77-98 (281)
436 PRK14173 bifunctional 5,10-met 39.9 47 0.001 30.1 4.4 63 67-139 167-229 (287)
437 cd03032 ArsC_Spx Arsenate Redu 39.8 56 0.0012 24.7 4.3 40 63-102 8-48 (115)
438 PRK07478 short chain dehydroge 39.6 1.8E+02 0.0039 23.9 7.6 27 92-118 66-94 (254)
439 PRK08589 short chain dehydroge 39.6 1.9E+02 0.0041 24.3 7.9 26 93-118 66-93 (272)
440 cd00133 PTS_IIB PTS_IIB: subun 39.5 1.1E+02 0.0024 20.2 7.9 70 54-140 1-72 (84)
441 COG0011 Uncharacterized conser 39.4 86 0.0019 24.3 5.2 45 59-105 14-62 (100)
442 PRK14169 bifunctional 5,10-met 39.2 47 0.001 30.0 4.3 64 67-140 168-231 (282)
443 PF09587 PGA_cap: Bacterial ca 39.2 82 0.0018 26.8 5.6 45 69-113 171-222 (250)
444 PRK14190 bifunctional 5,10-met 39.2 52 0.0011 29.7 4.6 49 85-139 184-232 (284)
445 PRK11253 ldcA L,D-carboxypepti 39.1 1.4E+02 0.003 26.9 7.3 67 53-120 2-79 (305)
446 TIGR00048 radical SAM enzyme, 38.9 1.4E+02 0.003 27.5 7.4 59 54-114 262-329 (355)
447 PRK02842 light-independent pro 38.8 1.6E+02 0.0034 27.5 7.9 27 54-82 168-194 (427)
448 PF14528 LAGLIDADG_3: LAGLIDAD 38.8 34 0.00074 23.6 2.7 25 62-86 28-52 (77)
449 cd06298 PBP1_CcpA_like Ligand- 38.8 2.1E+02 0.0045 23.2 7.8 78 51-130 115-198 (268)
450 cd03061 GST_N_CLIC GST_N famil 38.7 77 0.0017 23.7 4.8 39 61-99 18-56 (91)
451 PRK07453 protochlorophyllide o 38.7 1.9E+02 0.0041 25.0 7.9 25 93-117 67-93 (322)
452 cd03040 GST_N_mPGES2 GST_N fam 38.6 42 0.00091 22.8 3.1 21 66-86 11-31 (77)
453 PF09547 Spore_IV_A: Stage IV 38.5 1.3E+02 0.0028 29.5 7.3 54 53-106 145-207 (492)
454 smart00854 PGA_cap Bacterial c 38.4 59 0.0013 27.5 4.6 47 64-113 158-211 (239)
455 COG4026 Uncharacterized protei 38.3 1.7E+02 0.0036 26.4 7.4 56 54-113 8-64 (290)
456 TIGR02257 cobalto_cobN cobalto 38.3 2.9E+02 0.0064 29.7 10.4 106 50-155 189-313 (1122)
457 cd02940 DHPD_FMN Dihydropyrimi 38.2 1.6E+02 0.0035 26.0 7.5 63 52-115 100-176 (299)
458 TIGR03314 Se_ssnA putative sel 38.1 2.7E+02 0.0059 25.8 9.3 109 63-178 201-327 (441)
459 COG1103 Archaea-specific pyrid 38.1 58 0.0013 30.3 4.7 45 52-96 156-204 (382)
460 PRK12551 ATP-dependent Clp pro 38.1 2.4E+02 0.0053 23.9 8.2 76 56-131 27-107 (196)
461 cd07939 DRE_TIM_NifV Streptomy 37.9 1.6E+02 0.0035 25.3 7.3 57 54-110 84-155 (259)
462 PRK05854 short chain dehydroge 37.9 1.1E+02 0.0024 26.7 6.3 27 52-80 13-39 (313)
463 PF13727 CoA_binding_3: CoA-bi 37.8 73 0.0016 24.4 4.7 44 68-112 130-173 (175)
464 PF09752 DUF2048: Uncharacteri 37.8 54 0.0012 30.6 4.6 88 53-141 92-208 (348)
465 cd03819 GT1_WavL_like This fam 37.7 2.5E+02 0.0053 23.6 9.2 14 179-192 327-340 (355)
466 PF06506 PrpR_N: Propionate ca 37.7 87 0.0019 25.4 5.3 71 52-134 77-147 (176)
467 PRK13600 putative ribosomal pr 37.5 69 0.0015 23.9 4.3 29 56-84 32-60 (84)
468 COG0431 Predicted flavoprotein 37.5 2.3E+02 0.005 23.2 10.5 100 53-154 1-131 (184)
469 cd03035 ArsC_Yffb Arsenate Red 37.5 86 0.0019 23.6 4.9 38 65-102 9-47 (105)
470 PF03060 NMO: Nitronate monoox 37.4 1.1E+02 0.0024 27.5 6.4 102 53-169 114-227 (330)
471 TIGR02183 GRXA Glutaredoxin, G 37.4 1.3E+02 0.0028 21.5 5.6 34 59-92 4-40 (86)
472 cd06299 PBP1_LacI_like_13 Liga 37.4 1.7E+02 0.0037 23.6 7.1 77 51-129 115-195 (265)
473 PF02608 Bmp: Basic membrane p 37.4 49 0.0011 29.1 4.1 70 54-125 3-80 (306)
474 cd01715 ETF_alpha The electron 37.0 2.1E+02 0.0047 22.7 8.6 77 54-135 31-112 (168)
475 cd06273 PBP1_GntR_like_1 This 37.0 2.1E+02 0.0046 23.2 7.6 67 49-115 113-186 (268)
476 cd01017 AdcA Metal binding pro 37.0 94 0.002 27.0 5.7 124 7-140 113-253 (282)
477 cd03789 GT1_LPS_heptosyltransf 37.0 69 0.0015 27.2 4.8 40 92-140 188-227 (279)
478 PRK08303 short chain dehydroge 36.9 2E+02 0.0044 25.1 7.9 26 53-80 8-33 (305)
479 PRK12939 short chain dehydroge 36.8 2.2E+02 0.0048 22.9 7.7 52 66-118 42-95 (250)
480 cd04741 DHOD_1A_like Dihydroor 36.8 3E+02 0.0065 24.3 10.0 60 53-114 93-164 (294)
481 PRK14040 oxaloacetate decarbox 36.6 2.2E+02 0.0048 28.2 8.8 69 54-123 112-183 (593)
482 PRK12571 1-deoxy-D-xylulose-5- 36.2 1.6E+02 0.0035 29.3 7.8 68 54-126 506-575 (641)
483 cd04740 DHOD_1B_like Dihydroor 36.1 2.2E+02 0.0047 24.8 7.9 49 63-114 137-186 (296)
484 PF13409 GST_N_2: Glutathione 36.1 56 0.0012 22.3 3.4 24 66-89 3-26 (70)
485 cd03030 GRX_SH3BGR Glutaredoxi 35.9 85 0.0018 23.4 4.6 41 59-101 10-50 (92)
486 smart00642 Aamy Alpha-amylase 35.9 1.6E+02 0.0034 23.9 6.6 22 91-112 67-88 (166)
487 PRK10017 colanic acid biosynth 35.9 3.8E+02 0.0083 25.3 11.5 111 62-193 290-403 (426)
488 COG4002 Predicted phosphotrans 35.8 1.2E+02 0.0025 27.1 6.0 58 52-122 137-206 (256)
489 cd03820 GT1_amsD_like This fam 35.8 2.3E+02 0.0051 22.8 12.8 24 169-192 304-328 (348)
490 PHA03392 egt ecdysteroid UDP-g 35.7 4.1E+02 0.0088 25.5 12.4 133 53-194 297-443 (507)
491 COG0402 SsnA Cytosine deaminas 35.7 3.5E+02 0.0076 24.8 10.4 102 54-161 184-301 (421)
492 cd06371 PBP1_sensory_GC_DEF_li 35.6 2.4E+02 0.0053 25.3 8.4 62 53-115 133-196 (382)
493 PRK13601 putative L7Ae-like ri 35.5 87 0.0019 23.1 4.5 29 55-83 26-54 (82)
494 PRK06124 gluconate 5-dehydroge 35.3 1.9E+02 0.0042 23.6 7.1 13 53-65 11-23 (256)
495 cd06304 PBP1_BmpA_like Peripla 35.2 2.6E+02 0.0055 23.1 11.1 58 54-114 1-63 (260)
496 cd03053 GST_N_Phi GST_N family 35.0 85 0.0019 21.0 4.2 25 66-90 11-35 (76)
497 PRK14457 ribosomal RNA large s 35.0 1.8E+02 0.004 26.7 7.5 59 54-114 259-326 (345)
498 PRK14184 bifunctional 5,10-met 35.0 71 0.0015 28.9 4.7 50 84-139 186-235 (286)
499 cd03058 GST_N_Tau GST_N family 34.9 83 0.0018 21.1 4.1 23 66-88 10-32 (74)
500 cd06292 PBP1_LacI_like_10 Liga 34.9 1.5E+02 0.0032 24.2 6.4 68 49-116 119-190 (273)
No 1
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=100.00 E-value=7.5e-60 Score=385.89 Aligned_cols=142 Identities=48% Similarity=0.748 Sum_probs=139.8
Q ss_pred EEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCcEE
Q 029271 55 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVI 134 (196)
Q Consensus 55 V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PVI 134 (196)
|+|||||+||+++|+|+.++|++|||+||++|+||||+|+++.+|+++|+++|++|||++||++||||||+||+|++|||
T Consensus 1 V~IimGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t~~PVI 80 (156)
T TIGR01162 1 VGIIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALTPLPVI 80 (156)
T ss_pred CEEEECcHhhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhccCCCEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCChhh-hhhhhcCCCCCeeeEEecCChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 029271 135 RVPLLSEDWSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE 196 (196)
Q Consensus 135 gvP~~~~~~~G~D-LlS~lqmPsGvpvatV~I~~~~nAA~~AaqILa~~d~~l~~kl~~~r~~ 196 (196)
|||++++.++|+| ||||+|||+|+||+||+|+|++|||++|+|||+++|++||+||++||++
T Consensus 81 gvP~~~~~l~G~daLlS~vqmP~gvpvatv~I~~~~nAa~~AaqIl~~~d~~l~~kl~~~r~~ 143 (156)
T TIGR01162 81 GVPVPSKALSGLDSLLSIVQMPSGVPVATVAIGNAGNAALLAAQILGIKDPELAEKLKEYREN 143 (156)
T ss_pred EecCCccCCCCHHHHHHHhcCCCCCeeEEEEcCChhHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999988899999 9999999999999999999999999999999999999999999999974
No 2
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.4e-59 Score=383.12 Aligned_cols=144 Identities=43% Similarity=0.694 Sum_probs=141.8
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCc
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQIL 132 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~P 132 (196)
++|+|||||+|||++|+++.++|++|||+||++|.||||||+++.+|+++++++|++||||+||++||||||+|++|++|
T Consensus 3 ~~V~IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~T~lP 82 (162)
T COG0041 3 PKVGIIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAKTPLP 82 (162)
T ss_pred ceEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchhhhhcCCCC
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCChhh-hhhhhcCCCCCeeeEEecCChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 029271 133 VIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE 196 (196)
Q Consensus 133 VIgvP~~~~~~~G~D-LlS~lqmPsGvpvatV~I~~~~nAA~~AaqILa~~d~~l~~kl~~~r~~ 196 (196)
|||||+.+..++|+| |+|++|||+|+||+||+|++++|||++|+|||++.|+.+++||++||++
T Consensus 83 ViGVPv~s~~L~GlDSL~SiVQMP~GvPVaTvaIg~a~NAallAa~ILa~~d~~l~~kl~~~r~~ 147 (162)
T COG0041 83 VIGVPVQSKALSGLDSLLSIVQMPAGVPVATVAIGNAANAALLAAQILAIKDPELAEKLAEFREA 147 (162)
T ss_pred eEeccCccccccchHHHHHHhcCCCCCeeEEEeecchhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999999999999 9999999999999999999999999999999999999999999999974
No 3
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=100.00 E-value=6.4e-58 Score=372.53 Aligned_cols=144 Identities=40% Similarity=0.633 Sum_probs=128.3
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCc
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQIL 132 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~P 132 (196)
|+|+|||||+||+++++|++++|++||++||++|+|+||+|+++.+|++++|+++++|||++||++||||||+||+|++|
T Consensus 1 p~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpgvva~~t~~P 80 (150)
T PF00731_consen 1 PKVAIIMGSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALPGVVASLTTLP 80 (150)
T ss_dssp -EEEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HHHHHHHHSSS-
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccchhhheeccCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCChhh-hhhhhcCCCCCeeeEEecCChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 029271 133 VIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE 196 (196)
Q Consensus 133 VIgvP~~~~~~~G~D-LlS~lqmPsGvpvatV~I~~~~nAA~~AaqILa~~d~~l~~kl~~~r~~ 196 (196)
|||||++++++.|+| |||++|||+|+||+||+|||++|||++|+|||+++|+++|+||++||++
T Consensus 81 VIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~ILa~~d~~l~~kl~~~~~~ 145 (150)
T PF00731_consen 81 VIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARILALKDPELREKLRAYREK 145 (150)
T ss_dssp EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred EEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999999999 9999999999999999999999999999999999999999999999974
No 4
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=100.00 E-value=8.4e-51 Score=386.28 Aligned_cols=148 Identities=45% Similarity=0.738 Sum_probs=143.9
Q ss_pred cCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhc
Q 029271 49 AADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN 128 (196)
Q Consensus 49 ~~~~~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~ 128 (196)
+..+++|+|||||+||+++|+++.++|++|||+|+++|+||||+|+++.+|++++++++++||||+|||+||||||+||+
T Consensus 407 ~~~~~~v~i~~gs~sd~~~~~~~~~~l~~~g~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~~~a~~ 486 (577)
T PLN02948 407 PKGTPLVGIIMGSDSDLPTMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLPGMVASM 486 (577)
T ss_pred CCCCCeEEEEECchhhHHHHHHHHHHHHHcCCCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCccccchHHHhhc
Confidence 34467999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEecCCCCCCChhh-hhhhhcCCCCCeeeEEecCChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 029271 129 SQILVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE 196 (196)
Q Consensus 129 t~~PVIgvP~~~~~~~G~D-LlS~lqmPsGvpvatV~I~~~~nAA~~AaqILa~~d~~l~~kl~~~r~~ 196 (196)
|++||||||++++.++|+| ||||+|||+|+||+||||||++|||++|+|||+++|++||+||+.||++
T Consensus 487 t~~pvi~vp~~~~~~~g~~~l~s~~~~p~g~pv~~v~i~~~~~aa~~a~~i~~~~~~~~~~~~~~~~~~ 555 (577)
T PLN02948 487 TPLPVIGVPVKTSHLDGLDSLLSIVQMPRGVPVATVAIGNATNAGLLAVRMLGASDPDLLDKMEAYQED 555 (577)
T ss_pred cCCCEEEcCCCCCCCCcHHHHHHHhcCCCCCeEEEEecCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999988999999 9999999999999999999999999999999999999999999999974
No 5
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=99.97 E-value=4.7e-31 Score=227.43 Aligned_cols=128 Identities=26% Similarity=0.330 Sum_probs=114.9
Q ss_pred cCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCC----eEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHh
Q 029271 49 AADAPIVGIIMESDLDLPVMNDAARTLSDFGVP----YEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGV 124 (196)
Q Consensus 49 ~~~~~~V~IimGS~SD~~~~~~~~~~l~~~gi~----~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gv 124 (196)
+...++|+|++++|||+|++||++.+++.+|+. ||++|+++||....+.+... ++.+++|++|||+++||++
T Consensus 114 ~~~~g~vgvlsAGTSDlPvAeEa~~tae~lG~ev~~~~DvGVAGiHRLl~~l~r~~~----~~~~~lIVvAGMEGaLPsv 189 (254)
T COG1691 114 PKKGGKVGVLSAGTSDLPVAEEAAVTAEELGVEVQKVYDVGVAGIHRLLSALKRLKI----EDADVLIVVAGMEGALPSV 189 (254)
T ss_pred cccCceEEEEecCCCCcchHHHHHHHHHHhCceEEEEEeeccchHHhhhhHHHHHHh----hCCCeEEEEcccccchHHH
Confidence 334568999999999999999999999999997 89999999999998766543 5579999999999999999
Q ss_pred hhhccCCcEEEecCCCCC---CChhh-hhhhhcCCCCCe-eeEEecCChhhHHHHHHHHHccC
Q 029271 125 AAANSQILVIRVPLLSED---WSEDD-VINSIRMPSHVQ-VASVPRNNAKNAALYAVKVLGIA 182 (196)
Q Consensus 125 vA~~t~~PVIgvP~~~~~---~~G~D-LlS~lqmPsGvp-vatV~I~~~~nAA~~AaqILa~~ 182 (196)
+||+++.|||++|++.++ ++|+. |++||| ||.| +++|||||+++||.+|+||+...
T Consensus 190 vagLvD~PVIavPTsVGYG~g~gGiaaLltMLq--SCspGv~VVNIdNGfGAa~~A~~I~r~~ 250 (254)
T COG1691 190 VAGLVDVPVIAVPTSVGYGAGGGGIAALLTMLQ--SCSPGVGVVNIDNGFGAAVLAVQILRRI 250 (254)
T ss_pred HHhccCCCeEecccccccCcCCccHHHHHHHHH--hcCCCeEEEEccCchHHHHHHHHHHHHH
Confidence 999999999999999764 57899 999999 5556 89999999999999999999763
No 6
>KOG2835 consensus Phosphoribosylamidoimidazole-succinocarboxamide synthase [Nucleotide transport and metabolism]
Probab=99.88 E-value=1.1e-23 Score=191.54 Aligned_cols=142 Identities=29% Similarity=0.302 Sum_probs=137.8
Q ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCC
Q 029271 52 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI 131 (196)
Q Consensus 52 ~~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~ 131 (196)
.+.+.+.|++++|.++|...+..++.+++++|.-+.++||+|..+.+|...+.++|+.++||.||.++|+|+++++.+..
T Consensus 208 ~~~~~~r~~~~~d~~im~D~~~~~d~~~vt~e~~ilv~~~~t~~msr~a~~a~~~~~~~~iaga~~~~~~p~~v~a~f~~ 287 (373)
T KOG2835|consen 208 IDNDSWRMWPDGDGRIMKDKKVYFDLDEVTNEGLILVDENTTPVMSRYATSAKSRGVVLWIAGAYKAGHEPLMVDAEFER 287 (373)
T ss_pred cchhheEEcccCCcceeeeeeEEeccccCCccceEEEeecCchhHhhhhhhcccCceEEEEeccCCCCCChhhHHhhccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCCCCCCChhh-hhhhhcCCCCCeeeEEecCChhhHHHHHHHHHccCCHHHHHHHHHHHh
Q 029271 132 LVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVE 195 (196)
Q Consensus 132 PVIgvP~~~~~~~G~D-LlS~lqmPsGvpvatV~I~~~~nAA~~AaqILa~~d~~l~~kl~~~r~ 195 (196)
| |+|+....+.|.| ++|+||||.|+|++||+|++|+|||++|++||+..|+.+|.|++.|..
T Consensus 288 ~--gvp~~~~~~dg~~~~l~~V~~~~~~~~~~v~v~~p~~aa~~aar~l~~~~~~i~gk~~~~~l 350 (373)
T KOG2835|consen 288 P--GVPVVFVAVDGRDNLLSIVQMPNGVPVATVAVNNPENAALLAARILGLSNEMITGKMRSYQL 350 (373)
T ss_pred c--CcceeeeecccccccccceeccCCccccccccCCHHHHHHHHHHHHHhhhhHHHHHHHHhcc
Confidence 9 9999998999999 999999999999999999999999999999999999999999998864
No 7
>KOG2835 consensus Phosphoribosylamidoimidazole-succinocarboxamide synthase [Nucleotide transport and metabolism]
Probab=99.11 E-value=2e-11 Score=111.89 Aligned_cols=107 Identities=13% Similarity=0.014 Sum_probs=87.2
Q ss_pred cCCccchhhhhhhhhhhhccccCCCCCccccccccccccccCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEc
Q 029271 9 QLSSRKKTLMVTLQLLRCQIVYVPAACPSTKSCLPRFLLLAADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP 88 (196)
Q Consensus 9 ~~~sgdk~l~~dkq~yr~l~~vt~~~~~~vk~v~~~~~~~~~~~~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~S 88 (196)
-||.+|+++|+|||+|+++++||+|++..|++..+. ...+.+...-|.+ +.+.++|
T Consensus 215 ~~~~~d~~im~D~~~~~d~~~vt~e~~ilv~~~~t~------~msr~a~~a~~~~------------------~~~~iag 270 (373)
T KOG2835|consen 215 MWPDGDGRIMKDKKVYFDLDEVTNEGLILVDENTTP------VMSRYATSAKSRG------------------VVLWIAG 270 (373)
T ss_pred EcccCCcceeeeeeEEeccccCCccceEEEeecCch------hHhhhhhhcccCc------------------eEEEEec
Confidence 489999999999999999999999999999764422 1112222222222 7899999
Q ss_pred ccCCchHHHHHHHHHhhCCC-eEEEEecCCCCchhHhhhhccCCcEEEecCCC
Q 029271 89 PHQNCKEALSYALSAKERGI-KIIIVGDGVEAHLSGVAAANSQILVIRVPLLS 140 (196)
Q Consensus 89 aHR~p~~~~~~~~~~e~~~~-~V~IavAG~sa~L~gvvA~~t~~PVIgvP~~~ 140 (196)
+|+.+++...+.++++..|+ .++++++|++|.|+.|.++|+ .||=.+++..
T Consensus 271 a~~~~~~p~~v~a~f~~~gvp~~~~~~dg~~~~l~~V~~~~~-~~~~~v~v~~ 322 (373)
T KOG2835|consen 271 AYKAGHEPLMVDAEFERPGVPVVFVAVDGRDNLLSIVQMPNG-VPVATVAVNN 322 (373)
T ss_pred cCCCCCChhhHHhhccccCcceeeeecccccccccceeccCC-ccccccccCC
Confidence 99999999999999999999 799999999999999999999 5665555554
No 8
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=97.46 E-value=0.00075 Score=60.55 Aligned_cols=88 Identities=17% Similarity=0.123 Sum_probs=73.8
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCC-chhHhhhhccCC
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAANSQI 131 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa-~L~gvvA~~t~~ 131 (196)
.++.|++|+.+--...+++.+.|+..|+.+.......+-+.+.+.+.++.++..++++||++.|+|. -.+-.+|.....
T Consensus 23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~~~ 102 (351)
T cd08170 23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIGIGGGKTLDTAKAVADYLGA 102 (351)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEEecCchhhHHHHHHHHHcCC
Confidence 5899999876655899999999999999876555667888899999999998889999999999965 466677777789
Q ss_pred cEEEecCCC
Q 029271 132 LVIRVPLLS 140 (196)
Q Consensus 132 PVIgvP~~~ 140 (196)
|+|.||+..
T Consensus 103 P~iaIPTTa 111 (351)
T cd08170 103 PVVIVPTIA 111 (351)
T ss_pred CEEEeCCcc
Confidence 999999974
No 9
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=97.45 E-value=0.00076 Score=60.96 Aligned_cols=86 Identities=19% Similarity=0.140 Sum_probs=73.3
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCC-CchhHhhhhccCC
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANSQI 131 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~s-a~L~gvvA~~t~~ 131 (196)
.++.||++..+---..+++.+.|++.| .+.+. ...+++.+.+.++.+.+...++++||++.|++ .-+++.+|-....
T Consensus 35 ~~~livtd~~~~~~~~~~l~~~l~~~~-~~~~~-~~~~~t~~~v~~~~~~~~~~~~d~IIaiGGGsv~D~ak~vA~~rgi 112 (350)
T PRK00843 35 GRALIVTGPTTKKIAGDRVEENLEDAG-DVEVV-IVDEATMEEVEKVEEKAKDVNAGFLIGVGGGKVIDVAKLAAYRLGI 112 (350)
T ss_pred CeEEEEECCcHHHHHHHHHHHHHHhcC-CeeEE-eCCCCCHHHHHHHHHHhhccCCCEEEEeCCchHHHHHHHHHHhcCC
Confidence 479999998887777888999999888 77665 45699999999999999888899999998874 5589999988899
Q ss_pred cEEEecCCC
Q 029271 132 LVIRVPLLS 140 (196)
Q Consensus 132 PVIgvP~~~ 140 (196)
|+|.||+..
T Consensus 113 p~I~IPTT~ 121 (350)
T PRK00843 113 PFISVPTAA 121 (350)
T ss_pred CEEEeCCCc
Confidence 999999964
No 10
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=97.39 E-value=0.00093 Score=60.09 Aligned_cols=88 Identities=13% Similarity=0.104 Sum_probs=72.8
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCC-CchhHhhhhccCC
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANSQI 131 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~s-a~L~gvvA~~t~~ 131 (196)
.++.||+|..+-....+++.+.|++.|+.+++.+.+-.-+.+.+.+.++.+++.++++||++.|++ --.+..+|.....
T Consensus 23 ~~~liv~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs~~D~aK~ia~~~~~ 102 (349)
T cd08550 23 SKVAVVGGKTVLKKSRPRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGGGKTLDTAKAVADRLDK 102 (349)
T ss_pred CeEEEEEChHHHHHHHHHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCC
Confidence 478889987665577899999999989877666666677788899999999888899999999875 4577788888889
Q ss_pred cEEEecCCC
Q 029271 132 LVIRVPLLS 140 (196)
Q Consensus 132 PVIgvP~~~ 140 (196)
|+|.||+..
T Consensus 103 p~i~VPTta 111 (349)
T cd08550 103 PIVIVPTIA 111 (349)
T ss_pred CEEEeCCcc
Confidence 999999964
No 11
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=97.23 E-value=0.0016 Score=58.49 Aligned_cols=87 Identities=15% Similarity=0.117 Sum_probs=69.1
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEccc---CCchHHHHHHHHHhhCCCeEEEEecCCC-CchhHhhhhc
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPH---QNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAAN 128 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaH---R~p~~~~~~~~~~e~~~~~V~IavAG~s-a~L~gvvA~~ 128 (196)
.++.||++..+--...+++.+.|++.|+.+.+...... .+.+.+.+.++.+.. ++++||++.|++ --.+..+|..
T Consensus 24 ~~~livtd~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~-~~d~IIaIGGGs~~D~aK~vA~~ 102 (348)
T cd08175 24 KKALIVADENTYAAAGKKVEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKELER-DTDLIIAVGSGTINDITKYVSYK 102 (348)
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHhhc-cCCEEEEECCcHHHHHHHHHHHh
Confidence 47899998755444478999999999998765443333 888888888888876 789999999985 4577888888
Q ss_pred cCCcEEEecCCC
Q 029271 129 SQILVIRVPLLS 140 (196)
Q Consensus 129 t~~PVIgvP~~~ 140 (196)
...|+|.+|+..
T Consensus 103 ~~~p~i~IPTTa 114 (348)
T cd08175 103 TGIPYISVPTAP 114 (348)
T ss_pred cCCCEEEecCcc
Confidence 899999999974
No 12
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=97.23 E-value=0.0015 Score=58.83 Aligned_cols=88 Identities=11% Similarity=0.033 Sum_probs=71.7
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEE-EEEcccCCchHHHHHHHHHhhCCCeEEEEecCCC-CchhHhhhhccC
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANSQ 130 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev-~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~s-a~L~gvvA~~t~ 130 (196)
.++.||+|..+-....+++.+.|++-|+.+.+ .....+-+.+.+.+..+.++..++++||++.|+| --++..+|....
T Consensus 23 ~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGGGs~~D~aK~ia~~~~ 102 (345)
T cd08171 23 KKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGGGKAIDTVKVLADKLG 102 (345)
T ss_pred CEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHHcC
Confidence 58999999776667788899999998997653 2345677888888898888888999999999885 457778888778
Q ss_pred CcEEEecCCC
Q 029271 131 ILVIRVPLLS 140 (196)
Q Consensus 131 ~PVIgvP~~~ 140 (196)
.|+|.||+..
T Consensus 103 ~p~i~VPTt~ 112 (345)
T cd08171 103 KPVFTFPTIA 112 (345)
T ss_pred CCEEEecCcc
Confidence 9999999964
No 13
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=97.22 E-value=0.0021 Score=58.26 Aligned_cols=88 Identities=16% Similarity=0.126 Sum_probs=72.3
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCC-CchhHhhhhccCC
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANSQI 131 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~s-a~L~gvvA~~t~~ 131 (196)
.++.||++..+--...+++.+.|+..|+.+.+-....+-+.+.+.++++.+...++++||++.|+| --++..+|.....
T Consensus 30 ~~~livtd~~~~~~~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~ 109 (366)
T PRK09423 30 KRALVIADEFVLGIVGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGGGKTLDTAKAVADYLGV 109 (366)
T ss_pred CEEEEEEChhHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHHcCC
Confidence 579999987665558889999999999987544456777888888999988888899999999985 5678888888899
Q ss_pred cEEEecCCC
Q 029271 132 LVIRVPLLS 140 (196)
Q Consensus 132 PVIgvP~~~ 140 (196)
|+|.||+..
T Consensus 110 p~i~IPTta 118 (366)
T PRK09423 110 PVVIVPTIA 118 (366)
T ss_pred CEEEeCCcc
Confidence 999999964
No 14
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=97.21 E-value=0.0027 Score=56.97 Aligned_cols=87 Identities=21% Similarity=0.193 Sum_probs=69.0
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEc---ccCCchHHHHHHHHHhhCCC---eEEEEecCCCC-chhHhh
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGI---KIIIVGDGVEA-HLSGVA 125 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~S---aHR~p~~~~~~~~~~e~~~~---~V~IavAG~sa-~L~gvv 125 (196)
.++.|+++...--.+.+++.+.|++.|+++.+.+.. .+.+.+.+.++++.+.+.++ +++||+.|++. -+++.+
T Consensus 21 ~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~i 100 (344)
T TIGR01357 21 SKLVIITDETVADLYADKLLEALQALGYNVLKLTVPDGEESKSLETVQRLYDQLLEAGLDRSSTIIALGGGVVGDLAGFV 100 (344)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcChHHHHHHHHH
Confidence 579999987666568899999999999988755554 25677888888888887766 89999998854 478888
Q ss_pred hh--ccCCcEEEecCC
Q 029271 126 AA--NSQILVIRVPLL 139 (196)
Q Consensus 126 A~--~t~~PVIgvP~~ 139 (196)
|+ ....|+|.||+.
T Consensus 101 A~~~~~~~p~i~VPTT 116 (344)
T TIGR01357 101 AATYMRGIRFIQVPTT 116 (344)
T ss_pred HHHHccCCCEEEecCc
Confidence 73 457899999995
No 15
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=97.21 E-value=0.0027 Score=57.17 Aligned_cols=87 Identities=20% Similarity=0.270 Sum_probs=73.0
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcc---cCCchHHHHHHHHHhhCCC---eEEEEecCC-CCchhHhh
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPP---HQNCKEALSYALSAKERGI---KIIIVGDGV-EAHLSGVA 125 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~Sa---HR~p~~~~~~~~~~e~~~~---~V~IavAG~-sa~L~gvv 125 (196)
.++.|++++...-.+.+++.+.|+..|+.+.+-+... +++.+.+.++.+.+.+.++ +++||+.|+ ..-+++++
T Consensus 25 ~~~livtd~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~v 104 (345)
T cd08195 25 SKILIVTDENVAPLYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYDALLEAGLDRKSLIIALGGGVVGDLAGFV 104 (345)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHhHHHHH
Confidence 4799999887766899999999999999887666553 8888999999999988777 899999888 56688888
Q ss_pred hh--ccCCcEEEecCC
Q 029271 126 AA--NSQILVIRVPLL 139 (196)
Q Consensus 126 A~--~t~~PVIgvP~~ 139 (196)
|+ ....|+|.||+.
T Consensus 105 A~~~~rgip~i~VPTT 120 (345)
T cd08195 105 AATYMRGIDFIQIPTT 120 (345)
T ss_pred HHHHhcCCCeEEcchh
Confidence 84 567899999996
No 16
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=97.18 E-value=0.002 Score=58.13 Aligned_cols=88 Identities=16% Similarity=0.180 Sum_probs=70.5
Q ss_pred CeEEEEEcCCCCH-HHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCC-chhHhhhhcc
Q 029271 53 PIVGIIMESDLDL-PVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAANS 129 (196)
Q Consensus 53 ~~V~IimGS~SD~-~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa-~L~gvvA~~t 129 (196)
.+|.|++|..+-. ...+++.+.|+.-|+.+.+. -...|.+.+.+.+.++.+...++++||++.|++. -++-.+|...
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~AK~va~~~ 103 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGGGSVLDTAKAIALLA 103 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence 5899999877655 78889999999988876532 2447899999999999998889999999999754 4555666544
Q ss_pred ------------------CCcEEEecCCC
Q 029271 130 ------------------QILVIRVPLLS 140 (196)
Q Consensus 130 ------------------~~PVIgvP~~~ 140 (196)
..|+|.||+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~p~i~VPTt~ 132 (370)
T cd08551 104 TNPGDIWDYEGGKPVIKPALPLIAIPTTA 132 (370)
T ss_pred hCCCcHHHHhCcccccCCCCCEEEecCCC
Confidence 78999999975
No 17
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=97.08 E-value=0.0044 Score=55.56 Aligned_cols=86 Identities=21% Similarity=0.183 Sum_probs=71.3
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCC-CCchhHhhhhccCC
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAAANSQI 131 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~-sa~L~gvvA~~t~~ 131 (196)
.++.|+++...-....+++.+.|++.| .+.+.+. .+-+.+.+.++.+.+.+.++++||++.|+ ..-++..+|-....
T Consensus 26 ~~~liv~d~~~~~~~~~~v~~~l~~~~-~~~~~~~-~~~~~~~v~~~~~~~~~~~~d~iIaiGGGs~~D~aK~~a~~~~~ 103 (339)
T cd08173 26 GRVLVVTGPTTKSIAGKKVEALLEDEG-EVDVVIV-EDATYEEVEKVESSARDIGADFVIGVGGGRVIDVAKVAAYKLGI 103 (339)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcC-CeEEEEe-CCCCHHHHHHHHHHhhhcCCCEEEEeCCchHHHHHHHHHHhcCC
Confidence 478999988776678899999999988 7766543 56678888899999888889999999887 55688888888889
Q ss_pred cEEEecCCC
Q 029271 132 LVIRVPLLS 140 (196)
Q Consensus 132 PVIgvP~~~ 140 (196)
|+|.||+..
T Consensus 104 p~i~iPTT~ 112 (339)
T cd08173 104 PFISVPTAA 112 (339)
T ss_pred CEEEecCcc
Confidence 999999974
No 18
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=97.06 E-value=0.0034 Score=56.37 Aligned_cols=87 Identities=9% Similarity=-0.037 Sum_probs=68.9
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEc--ccCCchHHHHHHHHHhhCCCeEEEEecCC-CCchhHhhhhcc
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP--PHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAAANS 129 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~S--aHR~p~~~~~~~~~~e~~~~~V~IavAG~-sa~L~gvvA~~t 129 (196)
.+|.||+++..-.-..+++.+.|++-|+.+++.... .+.+.+.+.+.++.+.. +++++|++.|+ ..-+++++|-..
T Consensus 25 ~kvlivtd~~~~~~~~~~i~~~L~~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~-~~d~IIaiGGGsv~D~aK~iA~~~ 103 (332)
T cd08549 25 SKIMIVCGNNTYKVAGKEIIERLESNNFTKEVLERDSLLIPDEYELGEVLIKLDK-DTEFLLGIGSGTIIDLVKFVSFKV 103 (332)
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhc-CCCEEEEECCcHHHHHHHHHHHHc
Confidence 479999997776556799999999989877653222 33466778888888877 78999999887 566888999888
Q ss_pred CCcEEEecCCC
Q 029271 130 QILVIRVPLLS 140 (196)
Q Consensus 130 ~~PVIgvP~~~ 140 (196)
..|+|.||+..
T Consensus 104 gip~I~VPTT~ 114 (332)
T cd08549 104 GKPFISVPTAP 114 (332)
T ss_pred CCCEEEeCCCc
Confidence 99999999964
No 19
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=97.02 E-value=0.0046 Score=54.77 Aligned_cols=87 Identities=16% Similarity=0.148 Sum_probs=69.6
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCC-CchhHhhhhcc-
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANS- 129 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~s-a~L~gvvA~~t- 129 (196)
.++.||+|...--...+++.+.|++. +.+.+. ....+.+.+.+.+.++.+.+.++++||++.|++ .-++..+|...
T Consensus 24 ~~~liv~~~~~~~~~~~~v~~~l~~~-~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGs~~D~aK~ia~~~~ 102 (332)
T cd07766 24 DRALVVSDEGVVKGVGEKVADSLKKL-IAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVGGGSTLDTAKAVAALLN 102 (332)
T ss_pred CeEEEEeCCchhhhHHHHHHHHHHhc-CcEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCchHHHHHHHHHHHhc
Confidence 47899997765448889999999887 766543 244678889999999999888899999998874 56777888876
Q ss_pred -CCcEEEecCCC
Q 029271 130 -QILVIRVPLLS 140 (196)
Q Consensus 130 -~~PVIgvP~~~ 140 (196)
..|+|.||+..
T Consensus 103 ~~~p~i~iPTt~ 114 (332)
T cd07766 103 RGLPIIIVPTTA 114 (332)
T ss_pred CCCCEEEEeCCC
Confidence 89999999975
No 20
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=96.94 E-value=0.0067 Score=54.95 Aligned_cols=87 Identities=22% Similarity=0.268 Sum_probs=71.1
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEc---ccCCchHHHHHHHHHhhCCC---eEEEEecCC-CCchhHhh
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGI---KIIIVGDGV-EAHLSGVA 125 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~S---aHR~p~~~~~~~~~~e~~~~---~V~IavAG~-sa~L~gvv 125 (196)
.++.|++++...-...+++.+.|+..|+.+.+.+.+ .+++.+.+.++++.+.+.++ +++|++.|+ ..-+++.+
T Consensus 32 ~~~livtd~~~~~~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~i 111 (358)
T PRK00002 32 KKVAIVTDETVAPLYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDALLEAGLDRSDTLIALGGGVIGDLAGFA 111 (358)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcCcHHHHHHHHH
Confidence 589999988776679999999999999988765433 36778889999988887776 899999887 45678888
Q ss_pred hh--ccCCcEEEecCC
Q 029271 126 AA--NSQILVIRVPLL 139 (196)
Q Consensus 126 A~--~t~~PVIgvP~~ 139 (196)
|+ ....|+|.||+.
T Consensus 112 A~~~~~gip~i~IPTT 127 (358)
T PRK00002 112 AATYMRGIRFIQVPTT 127 (358)
T ss_pred HHHhcCCCCEEEcCch
Confidence 84 567899999996
No 21
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=96.92 E-value=0.0059 Score=55.55 Aligned_cols=88 Identities=14% Similarity=0.143 Sum_probs=68.1
Q ss_pred CeEEEEEcCCC--CHHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhH-hhhh-
Q 029271 53 PIVGIIMESDL--DLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG-VAAA- 127 (196)
Q Consensus 53 ~~V~IimGS~S--D~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~g-vvA~- 127 (196)
.+|.||+|..+ .....+++.+.|++.|+.+.+. -...+-+.+.+.+.++.+++.++++||++.|+|.-=.+ .++.
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGGGS~iD~aK~ia~~ 105 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGGGSSMDTAKAIAFM 105 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHH
Confidence 58999999876 5678899999999999987642 23468888999999999988899999999998753111 2222
Q ss_pred ----------------------ccCCcEEEecCCC
Q 029271 128 ----------------------NSQILVIRVPLLS 140 (196)
Q Consensus 128 ----------------------~t~~PVIgvP~~~ 140 (196)
...+|+|.||+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTta 140 (380)
T cd08185 106 AANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTA 140 (380)
T ss_pred hhCCCCHHHHhcccccccccCCCCCCCEEEEcCCC
Confidence 1358999999964
No 22
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=96.85 E-value=0.0084 Score=54.71 Aligned_cols=87 Identities=15% Similarity=0.224 Sum_probs=72.2
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEc---ccCCchHHHHHHHHHhhCCC----eEEEEecCC-CCchhHh
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGI----KIIIVGDGV-EAHLSGV 124 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~S---aHR~p~~~~~~~~~~e~~~~----~V~IavAG~-sa~L~gv 124 (196)
.++.||++....--+.+++.+.|+..|++++.-+.. .+++.+.+.++.+.+.+.++ +++|++.|+ ..-++++
T Consensus 27 ~~~lvVtd~~v~~~~~~~v~~~l~~~g~~~~~~v~~~~e~~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGGG~v~D~ak~ 106 (354)
T cd08199 27 GRRFVVVDQNVDKLYGKKLREYFAHHNIPLTILVLRAGEAAKTMDTVLKIVDALDAFGISRRREPVLAIGGGVLTDVAGL 106 (354)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHH
Confidence 579999987665557789999999999988765444 58899999999998888787 999998885 7789999
Q ss_pred hhh--ccCCcEEEecCC
Q 029271 125 AAA--NSQILVIRVPLL 139 (196)
Q Consensus 125 vA~--~t~~PVIgvP~~ 139 (196)
+|+ ....|.|.||+.
T Consensus 107 ~A~~~~rg~p~i~VPTT 123 (354)
T cd08199 107 AASLYRRGTPYVRIPTT 123 (354)
T ss_pred HHHHhcCCCCEEEEcCc
Confidence 994 678999999994
No 23
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=96.83 E-value=0.0094 Score=54.45 Aligned_cols=87 Identities=18% Similarity=0.249 Sum_probs=70.5
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEc---ccCCchHHHHHHHHHhhCCCe---EEEEecCC-CCchhHhh
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGIK---IIIVGDGV-EAHLSGVA 125 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~S---aHR~p~~~~~~~~~~e~~~~~---V~IavAG~-sa~L~gvv 125 (196)
.++.|++++.-.-...+++.+.|+..|+++++.+.+ .+++.+.+.++.+.+.+.+++ +|||+.|+ ..-+++++
T Consensus 24 ~rvlvVtd~~v~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~dr~~~IIAvGGGsv~D~ak~~ 103 (355)
T cd08197 24 DKYLLVTDSNVEDLYGHRLLEYLREAGAPVELLSVPSGEEHKTLSTLSDLVERALALGATRRSVIVALGGGVVGNIAGLL 103 (355)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHH
Confidence 478999987655458889999999999988766643 477888999999999888887 99988887 56688888
Q ss_pred hhc--cCCcEEEecCC
Q 029271 126 AAN--SQILVIRVPLL 139 (196)
Q Consensus 126 A~~--t~~PVIgvP~~ 139 (196)
|+. ...|+|.+|+.
T Consensus 104 A~~~~rgip~I~IPTT 119 (355)
T cd08197 104 AALLFRGIRLVHIPTT 119 (355)
T ss_pred HHHhccCCCEEEecCc
Confidence 864 57899999995
No 24
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=96.80 E-value=0.0077 Score=54.79 Aligned_cols=86 Identities=13% Similarity=0.081 Sum_probs=65.3
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc-hhHhhhhc---
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAAN--- 128 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~-L~gvvA~~--- 128 (196)
.++.|++|..+= ..+++...|++.|+.+.+.-....-+.+.+.+.++.+++.++++||++.|+|.. .+-.+|..
T Consensus 23 ~r~livtd~~~~--~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~ia~~~~~ 100 (374)
T cd08183 23 RRVLLVTGASSL--RAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGGGSVIDAGKAIAALLPN 100 (374)
T ss_pred CcEEEEECCchH--HHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHHcC
Confidence 589999987553 888999999999998765423346666788889999988899999999999653 33344321
Q ss_pred -------------------cCCcEEEecCCC
Q 029271 129 -------------------SQILVIRVPLLS 140 (196)
Q Consensus 129 -------------------t~~PVIgvP~~~ 140 (196)
..+|+|.||+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~p~i~VPTta 131 (374)
T cd08183 101 PGSVLDYLEGVGRGLPLDGPPLPFIAIPTTA 131 (374)
T ss_pred CCCHHHHHhccCccccCCCCCCCEEEecCCC
Confidence 358999999974
No 25
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=96.77 E-value=0.0085 Score=54.20 Aligned_cols=86 Identities=13% Similarity=0.132 Sum_probs=65.8
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCC-chhHhhhhc--
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAAN-- 128 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa-~L~gvvA~~-- 128 (196)
.++.||+|+.+- ..+++.+.|++.|+.+.+. -...|.+.+.+.+.++.+++.++++||++.|+|. -++-.+|..
T Consensus 24 ~~~livtd~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~~D~aK~ia~~~~ 101 (367)
T cd08182 24 KRVLLVTGPRSA--IASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGGGSVLDTAKALAALLG 101 (367)
T ss_pred CeEEEEeCchHH--HHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHh
Confidence 479999987664 6788889999999765432 2446888899999999998889999999999854 344454432
Q ss_pred --------------------cCCcEEEecCCC
Q 029271 129 --------------------SQILVIRVPLLS 140 (196)
Q Consensus 129 --------------------t~~PVIgvP~~~ 140 (196)
...|+|.||+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTta 133 (367)
T cd08182 102 APREALEDLRIRNKERENRERALPLIAIPTTA 133 (367)
T ss_pred CCCcHHHHHHHhccCCCCCCCCCCEEEeCCCC
Confidence 357999999975
No 26
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=96.73 E-value=0.0068 Score=55.20 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=66.3
Q ss_pred CeEEEEEcCCCCH-HHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCC-----chhHhh
Q 029271 53 PIVGIIMESDLDL-PVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-----HLSGVA 125 (196)
Q Consensus 53 ~~V~IimGS~SD~-~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa-----~L~gvv 125 (196)
.++.|++|..... ...+++.+.|+..|+.+.+- =...|-+.+.+.+.++.++..++++||++.|+|. .++-+.
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~ 108 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGGGSPHDCAKAIGIVA 108 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHH
Confidence 4788998865544 68899999999999976542 1335888899999999998889999999999876 222110
Q ss_pred --------------hhccCCcEEEecCCC
Q 029271 126 --------------AANSQILVIRVPLLS 140 (196)
Q Consensus 126 --------------A~~t~~PVIgvP~~~ 140 (196)
.-...+|+|.||+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~P~i~IPTta 137 (377)
T cd08176 109 TNGGDIRDYEGVAKSKKPAVPIVAINTTA 137 (377)
T ss_pred hCCCCHHHHhCcCccCCCCCCEEEeCCCC
Confidence 013568999999964
No 27
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=96.72 E-value=0.015 Score=51.88 Aligned_cols=82 Identities=12% Similarity=0.024 Sum_probs=59.2
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC-CCeEEEEecCC-CCchhHhhhhccC
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER-GIKIIIVGDGV-EAHLSGVAAANSQ 130 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~-~~~V~IavAG~-sa~L~gvvA~~t~ 130 (196)
.++.||+|... .+++.+.|+..++ .++.+.. .++.+...++.+.++.. +.++||++.|+ ..-+++++|....
T Consensus 26 ~r~livtd~~~----~~~~~~~L~~~~~-~~~~~~~-~~~~~~~~~i~~~~~~~~~~d~iIaiGGGsv~D~aK~vA~~~~ 99 (331)
T cd08174 26 GRVAVVSGPGV----GEQVAESLKTSFS-AEVEAVE-EVSNSDAEEIGARARSIPNVDAVVGIGGGKVIDVAKYAAFLRG 99 (331)
T ss_pred CceEEEECCcH----HHHHHHHHHhccC-ceEEEec-CCCccCHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhhcC
Confidence 47999998766 7788888887777 3333332 34444445544444443 47999988886 6679999999999
Q ss_pred CcEEEecCCC
Q 029271 131 ILVIRVPLLS 140 (196)
Q Consensus 131 ~PVIgvP~~~ 140 (196)
.|+|.||+..
T Consensus 100 ~p~i~vPTt~ 109 (331)
T cd08174 100 IPLSVPTTNL 109 (331)
T ss_pred CCEEEecCcc
Confidence 9999999965
No 28
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=96.66 E-value=0.0049 Score=56.03 Aligned_cols=88 Identities=13% Similarity=0.125 Sum_probs=68.0
Q ss_pred CeEEEEEcCCC-CHHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc-hhHhhhhc-
Q 029271 53 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAAN- 128 (196)
Q Consensus 53 ~~V~IimGS~S-D~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~-L~gvvA~~- 128 (196)
.++.|++|+.- +....+++...|++.|+.+.+. -.-.|.+.+.+.+.++.+++.++++||++.|+|.. .+..+|..
T Consensus 27 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGs~iD~aK~ia~~~ 106 (376)
T cd08193 27 KRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGGGSSMDVAKLVAVLA 106 (376)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence 47888887642 5567899999999999876532 23378889999999999998899999999999764 34455543
Q ss_pred -----------------cCCcEEEecCCC
Q 029271 129 -----------------SQILVIRVPLLS 140 (196)
Q Consensus 129 -----------------t~~PVIgvP~~~ 140 (196)
...|+|.||+..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~p~i~IPTTa 135 (376)
T cd08193 107 GSDQPLADMYGVDLVAGPRLPLILVPTTA 135 (376)
T ss_pred HCCCCHHHHhCCCccCCCCCCEEEeCCCC
Confidence 368999999975
No 29
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=96.61 E-value=0.012 Score=53.50 Aligned_cols=88 Identities=17% Similarity=0.146 Sum_probs=67.7
Q ss_pred CeEEEEEcCCCC-HHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc-hhHhhhh--
Q 029271 53 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAA-- 127 (196)
Q Consensus 53 ~~V~IimGS~SD-~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~-L~gvvA~-- 127 (196)
.++.||+|..+- ....+++.+.|++.|+.+.+- -...|-+.+.+.+.++.++..++++||++.|+|.. .+-++|.
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~AKaia~~~ 103 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGGGSPIDTAKAIAVLA 103 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence 479999976554 347899999999999976542 34578888899999999988899999999998653 3334442
Q ss_pred ----------------ccCCcEEEecCCC
Q 029271 128 ----------------NSQILVIRVPLLS 140 (196)
Q Consensus 128 ----------------~t~~PVIgvP~~~ 140 (196)
...+|+|.||+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~P~i~IPTta 132 (375)
T cd08194 104 TNGGSIRDYKGPRIVDKPGLPLIAIPTTA 132 (375)
T ss_pred hCCCCHHHHhCcccccCCCCCEEEECCCC
Confidence 2457999999964
No 30
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=96.54 E-value=0.013 Score=53.43 Aligned_cols=88 Identities=15% Similarity=0.062 Sum_probs=66.1
Q ss_pred CeEEEEEcCCCC--HHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCch-hHhhhh-
Q 029271 53 PIVGIIMESDLD--LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL-SGVAAA- 127 (196)
Q Consensus 53 ~~V~IimGS~SD--~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L-~gvvA~- 127 (196)
.++.||+|..+- ....+++.+.|+..|+.+.+. -...|-+.+.+.+.++.++..++++||++.|+|..= +-.++.
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~ 108 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGGGSVIDSAKAIAAG 108 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhH
Confidence 489999986554 356789999999999875532 234677888999999999998999999999987642 224433
Q ss_pred -----------------ccCCcEEEecCCC
Q 029271 128 -----------------NSQILVIRVPLLS 140 (196)
Q Consensus 128 -----------------~t~~PVIgvP~~~ 140 (196)
....|+|.||+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~P~iaIPTTa 138 (382)
T cd08187 109 APYDGDVWDFFTGKAKIEKALPVGTVLTLA 138 (382)
T ss_pred hhCCCCHHHHhcccCCCCCCCCEEEEeCCC
Confidence 2358999999964
No 31
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=96.54 E-value=0.01 Score=54.24 Aligned_cols=88 Identities=16% Similarity=0.183 Sum_probs=66.2
Q ss_pred CeEEEEEcCCC--CHHHHHHHHHHHHHhCCCeEEEE-EcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc-hhHhhhhc
Q 029271 53 PIVGIIMESDL--DLPVMNDAARTLSDFGVPYEIKI-LPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAAN 128 (196)
Q Consensus 53 ~~V~IimGS~S--D~~~~~~~~~~l~~~gi~~ev~V-~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~-L~gvvA~~ 128 (196)
.++.|++|..+ -....+++.+.|++.|+.+.+-- ...+.+.+.+.+.++.+++.++++||++.|+|.. .+..+|..
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~ 106 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGGGSPIDSAKSAAIL 106 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHH
Confidence 47999998654 25567899999999999765431 3367788999999999999899999999998643 33344331
Q ss_pred -------------------cCCcEEEecCCC
Q 029271 129 -------------------SQILVIRVPLLS 140 (196)
Q Consensus 129 -------------------t~~PVIgvP~~~ 140 (196)
...|+|.||+..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTa 137 (383)
T cd08186 107 LEHPGKTARDLYEFKFTPEKALPLIAINLTH 137 (383)
T ss_pred HhCCCCcHHHHhCCCcccCCCCCEEEEeCCC
Confidence 257999999964
No 32
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=96.49 E-value=0.014 Score=53.31 Aligned_cols=89 Identities=16% Similarity=0.231 Sum_probs=66.0
Q ss_pred CeEEEEEcCCCC-HHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc-hhHhhh---
Q 029271 53 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAA--- 126 (196)
Q Consensus 53 ~~V~IimGS~SD-~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~-L~gvvA--- 126 (196)
.++.|++|.... ....+++.+.|++.|+.+.+. -...+.+.+.+.+.++.+...++++||++.|+|.. .+=.+|
T Consensus 30 ~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGGGSviD~aKaia~~~ 109 (379)
T TIGR02638 30 KKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGGGSPIDTAKAIGIIS 109 (379)
T ss_pred CEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHH
Confidence 489999976533 347889999999999977642 12368888999999999988899999999998754 331221
Q ss_pred h-----------------ccCCcEEEecCCCC
Q 029271 127 A-----------------NSQILVIRVPLLSE 141 (196)
Q Consensus 127 ~-----------------~t~~PVIgvP~~~~ 141 (196)
. ....|+|.||+..+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTag 141 (379)
T TIGR02638 110 NNPEFADVRSLEGVAPTKKPGVPIIAIPTTAG 141 (379)
T ss_pred hCCCCCCHHHhhCCCccCCCCCCEEEECCCCc
Confidence 1 13479999999753
No 33
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=96.46 E-value=0.01 Score=53.96 Aligned_cols=88 Identities=18% Similarity=0.242 Sum_probs=65.0
Q ss_pred CeEEEEEcCCCC-HHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc-hhHhhhhc-
Q 029271 53 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAAN- 128 (196)
Q Consensus 53 ~~V~IimGS~SD-~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~-L~gvvA~~- 128 (196)
.+|.|++|.... ....+++.+.|+..|+.+.+- -.-.|.+.+.+.+.++.+.+.++++||++.|+|.. .+-.+|..
T Consensus 27 ~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGS~~D~aK~ia~~~ 106 (374)
T cd08189 27 KKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGGGSVIDCAKAIAARA 106 (374)
T ss_pred CeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHH
Confidence 489999986543 346789999999999976532 22367888889999999988899999999998653 33344332
Q ss_pred --c----------------CCcEEEecCCC
Q 029271 129 --S----------------QILVIRVPLLS 140 (196)
Q Consensus 129 --t----------------~~PVIgvP~~~ 140 (196)
. ..|+|.||+..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~p~i~VPTta 136 (374)
T cd08189 107 ANPKKSLRKLTGLLKVKKPLPPLFAIPTTA 136 (374)
T ss_pred hCCCCCHHHHhCccccCCCCCCEEEEECCC
Confidence 1 26999999975
No 34
>PLN02834 3-dehydroquinate synthase
Probab=96.41 E-value=0.025 Score=53.24 Aligned_cols=87 Identities=16% Similarity=0.226 Sum_probs=69.7
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEE--EEEc---ccCCchHHHHHHHHHhhCCCe---EEEEecCC-CCchhH
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEI--KILP---PHQNCKEALSYALSAKERGIK---IIIVGDGV-EAHLSG 123 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev--~V~S---aHR~p~~~~~~~~~~e~~~~~---V~IavAG~-sa~L~g 123 (196)
.++.||++....--+.+++.+.|+.-|+++.+ .+.. .+++.+.+.++.+.+...+++ +|||+.|+ ..-+++
T Consensus 101 ~rvlIVtD~~v~~~~~~~v~~~L~~~g~~~~v~~~v~~~gE~~ksl~~v~~~~~~l~~~~~dr~~~VIAiGGGsv~D~ak 180 (433)
T PLN02834 101 KRVLVVTNETVAPLYLEKVVEALTAKGPELTVESVILPDGEKYKDMETLMKVFDKALESRLDRRCTFVALGGGVIGDMCG 180 (433)
T ss_pred CEEEEEECccHHHHHHHHHHHHHHhcCCceEEEEEEecCCcCCCCHHHHHHHHHHHHhcCCCcCcEEEEECChHHHHHHH
Confidence 57999998776666899999999999987665 3433 468888888888888887876 99999887 567888
Q ss_pred hhhh--ccCCcEEEecCC
Q 029271 124 VAAA--NSQILVIRVPLL 139 (196)
Q Consensus 124 vvA~--~t~~PVIgvP~~ 139 (196)
++|+ .-..|+|.||+.
T Consensus 181 ~~A~~y~rgiplI~VPTT 198 (433)
T PLN02834 181 FAAASYQRGVNFVQIPTT 198 (433)
T ss_pred HHHHHhcCCCCEEEECCc
Confidence 8875 557899999995
No 35
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=96.41 E-value=0.014 Score=52.82 Aligned_cols=88 Identities=18% Similarity=0.167 Sum_probs=66.0
Q ss_pred CeEEEEEcCCC-CHHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc-hhHhhhhc-
Q 029271 53 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAAN- 128 (196)
Q Consensus 53 ~~V~IimGS~S-D~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~-L~gvvA~~- 128 (196)
.++.|++|... +....+++.+.|++-|+++.+- -...|-+.+.+.+.++.++..++++||++.|+|.. ++-.+|..
T Consensus 25 ~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGSviD~aK~ia~~~ 104 (370)
T cd08192 25 KRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGGGSALDLAKAVALMA 104 (370)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence 47888887543 3457899999999999976542 23478888899999999988899999999998643 33344332
Q ss_pred ---------------------cCCcEEEecCCC
Q 029271 129 ---------------------SQILVIRVPLLS 140 (196)
Q Consensus 129 ---------------------t~~PVIgvP~~~ 140 (196)
...|+|.||+..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTta 137 (370)
T cd08192 105 GHPGPLWDYEDIEGGWPRITDAIPPLIAIPTTA 137 (370)
T ss_pred hCCCCHHHHhcccccccccCCCCCCEEEecCCC
Confidence 248999999975
No 36
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=96.35 E-value=0.009 Score=53.72 Aligned_cols=86 Identities=19% Similarity=0.024 Sum_probs=65.4
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCC-CchhHhhhhccCC
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANSQI 131 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~s-a~L~gvvA~~t~~ 131 (196)
.++.||++..+=....++..+.|+..++.+.+ .... .+.+.+.+.++.+.+.++++||++.|++ --++..+|.....
T Consensus 24 ~~~liv~d~~~~~~~~~~l~~~L~~~~~~~~~-~~~~-p~~~~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~~~~ 101 (347)
T cd08172 24 KRPLIVTGPRSWAAAKPYLPESLAAGEAFVLR-YDGE-CSEENIERLAAQAKENGADVIIGIGGGKVLDTAKAVADRLGV 101 (347)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHhcCeEEEEE-eCCC-CCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHhCC
Confidence 47899998665445666666666655665431 1223 7888899999999988999999999874 5688888888899
Q ss_pred cEEEecCCC
Q 029271 132 LVIRVPLLS 140 (196)
Q Consensus 132 PVIgvP~~~ 140 (196)
|+|.||+..
T Consensus 102 p~i~VPTT~ 110 (347)
T cd08172 102 PVITVPTLA 110 (347)
T ss_pred CEEEecCcc
Confidence 999999974
No 37
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=96.30 E-value=0.023 Score=51.49 Aligned_cols=88 Identities=16% Similarity=0.191 Sum_probs=67.2
Q ss_pred CeEEEEEcCCC-C-HHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc-hhHhhhh-
Q 029271 53 PIVGIIMESDL-D-LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAA- 127 (196)
Q Consensus 53 ~~V~IimGS~S-D-~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~-L~gvvA~- 127 (196)
.++.|++|..+ . ....+++.+.|++.|+.+.+. -...+-+.+.+.+.++.+++.++++||++.|+|.. .+-.++.
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSviD~aK~ia~~ 105 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGGGSPLDAAKAIAVL 105 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHH
Confidence 58999998765 3 346788999999999976542 13368888999999999999999999999999764 2323332
Q ss_pred ----------------ccCCcEEEecCCC
Q 029271 128 ----------------NSQILVIRVPLLS 140 (196)
Q Consensus 128 ----------------~t~~PVIgvP~~~ 140 (196)
....|+|.||+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~P~i~VPTta 134 (357)
T cd08181 106 IKNPDLKVELYFRSKYLKALPVVAIPTTA 134 (357)
T ss_pred HhCCCcHHHHhcccccCCCCCEEEEeCCC
Confidence 2358999999975
No 38
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=96.28 E-value=0.019 Score=52.72 Aligned_cols=67 Identities=15% Similarity=0.050 Sum_probs=53.2
Q ss_pred CeEEEEEcCC-CCHHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCC
Q 029271 53 PIVGIIMESD-LDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 119 (196)
Q Consensus 53 ~~V~IimGS~-SD~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa 119 (196)
.+|.||++.. .+....+++.+.|++.|+.+.+- -...+.+.+.+.+.++.+.+.++++||++.|+|.
T Consensus 22 ~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 90 (398)
T cd08178 22 KRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGGGSP 90 (398)
T ss_pred CeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccH
Confidence 4788998754 34458889999999999876532 2346788889999999999889999999999864
No 39
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=96.24 E-value=0.005 Score=54.10 Aligned_cols=136 Identities=15% Similarity=0.136 Sum_probs=85.5
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEE-EcccCCchHHHHHHHHHhhCCCeEEEEecCC-CCchhHhhhhccC
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKI-LPPHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAAANSQ 130 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V-~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~-sa~L~gvvA~~t~ 130 (196)
.++.||++...---..+++.+.|+..|+++.+-. ..-+-+-+.+.++.++++..+++++|++.|+ .+-++=++|.+..
T Consensus 20 ~~~lvv~d~~t~~~~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vGgG~i~D~~K~~A~~~~ 99 (250)
T PF13685_consen 20 KKVLVVTDENTYKAAGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVGGGTIIDIAKYAAFELG 99 (250)
T ss_dssp SEEEEEEETTHHHHHHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEESHHHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeCCcHHHHHHHHHHHhcC
Confidence 4899999998877778899999999999876322 1122345556677777766678888887665 7889999999999
Q ss_pred CcEEEecCCCCCCChhh-hhhhhcC---------CCCCeeeEEecC-----------ChhhHHHHHHHHHccCCHHHHHH
Q 029271 131 ILVIRVPLLSEDWSEDD-VINSIRM---------PSHVQVASVPRN-----------NAKNAALYAVKVLGIADEDLLER 189 (196)
Q Consensus 131 ~PVIgvP~~~~~~~G~D-LlS~lqm---------PsGvpvatV~I~-----------~~~nAA~~AaqILa~~d~~l~~k 189 (196)
+|.|.||+.- +.+|+. -.+++.. |.-.|.+++ +| ..-+.+=+.+++-++.||.|..+
T Consensus 100 ~p~isVPTa~-S~DG~aS~~Asl~~~~g~k~s~~~a~~P~aIi-aD~dIi~~AP~~l~~aG~GDli~k~tA~~DW~La~~ 177 (250)
T PF13685_consen 100 IPFISVPTAA-SHDGFASPVASLTVDDGFKVSYGPAKAPIAII-ADTDIIANAPRRLIAAGFGDLISKYTALADWKLAHE 177 (250)
T ss_dssp --EEEEES---SSGGGTSSEEEEEET-TEEEEE-E----SEEE-EEHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEecccc-ccccccCCCeeEEecCCCceeecCCCCCeEEE-EeHHHHHhCCHHHHHhhHHHHHHhhhhHHHHHHHHH
Confidence 9999999975 355543 2222221 444555655 23 23455566788888889888765
Q ss_pred H
Q 029271 190 I 190 (196)
Q Consensus 190 l 190 (196)
+
T Consensus 178 ~ 178 (250)
T PF13685_consen 178 Y 178 (250)
T ss_dssp T
T ss_pred h
Confidence 4
No 40
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=96.20 E-value=0.013 Score=52.92 Aligned_cols=87 Identities=16% Similarity=0.192 Sum_probs=66.4
Q ss_pred eEEEEEcCCCCHH--HHHHHHHHHHHhCCCeEEEE-EcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc----hhHhhh
Q 029271 54 IVGIIMESDLDLP--VMNDAARTLSDFGVPYEIKI-LPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH----LSGVAA 126 (196)
Q Consensus 54 ~V~IimGS~SD~~--~~~~~~~~l~~~gi~~ev~V-~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~----L~gvvA 126 (196)
+|.||++. +-.. ..+++.+.|++-|+.+.+-- ...|-+.+.+.+.++.+++.++++||++.|+|.- .-.+..
T Consensus 23 r~lvVt~~-~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~va~~~ 101 (366)
T PF00465_consen 23 RVLVVTDP-SLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGGGSVMDAAKAVALLL 101 (366)
T ss_dssp EEEEEEEH-HHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEESHHHHHHHHHHHHHH
T ss_pred CEEEEECc-hHHhCccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCcHHHHHHhhc
Confidence 99999987 3322 68999999999999886543 5799999999999999999999999999998642 222222
Q ss_pred hcc----------------CCcEEEecCCCC
Q 029271 127 ANS----------------QILVIRVPLLSE 141 (196)
Q Consensus 127 ~~t----------------~~PVIgvP~~~~ 141 (196)
.+. .+|+|.||+..+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~g 132 (366)
T PF00465_consen 102 ANPGDLRDLLGKGPPPTKPALPLIAIPTTAG 132 (366)
T ss_dssp TSSSCGGGGGCECSCCSS--SEEEEEESSSS
T ss_pred cCCCcHHHHHhhccccccCCCcEEEeeCCcc
Confidence 221 289999999754
No 41
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=96.19 E-value=0.012 Score=52.87 Aligned_cols=87 Identities=16% Similarity=0.131 Sum_probs=66.1
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCC-chhHhhhhccCC
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAANSQI 131 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa-~L~gvvA~~t~~ 131 (196)
.++.|++|...--...+++.+.|++.++.. +.-...|-+.+.+.+.++.+.+.++++||++.|++. -++-++|.....
T Consensus 24 ~~~livt~~~~~~~~~~~v~~~l~~~~~~~-~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGs~iD~aK~ia~~~~~ 102 (337)
T cd08177 24 SRALVLTTPSLATKLAERVASALGDRVAGT-FDGAVMHTPVEVTEAAVAAAREAGADGIVAIGGGSTIDLAKAIALRTGL 102 (337)
T ss_pred CeEEEEcChHHHHHHHHHHHHHhccCCcEE-eCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHhcC
Confidence 478999987554447888888888764321 122235777888889998888888999999999854 577788877799
Q ss_pred cEEEecCCC
Q 029271 132 LVIRVPLLS 140 (196)
Q Consensus 132 PVIgvP~~~ 140 (196)
|+|.||+..
T Consensus 103 p~i~IPTta 111 (337)
T cd08177 103 PIIAIPTTL 111 (337)
T ss_pred CEEEEcCCc
Confidence 999999964
No 42
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=96.13 E-value=0.033 Score=50.97 Aligned_cols=87 Identities=24% Similarity=0.287 Sum_probs=62.6
Q ss_pred CeEEEEEcCCCC-HHHHHHHHHHHHHhCCCeEEE--EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc-hhHhhhhc
Q 029271 53 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIK--ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAAN 128 (196)
Q Consensus 53 ~~V~IimGS~SD-~~~~~~~~~~l~~~gi~~ev~--V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~-L~gvvA~~ 128 (196)
.+|.||+|...- ....+++.+.|++-|+.+.+. +. .+-..+.+.+.++.+.+.++++||++.|+|.. .+-.+|..
T Consensus 23 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~-~~~~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~ 101 (386)
T cd08191 23 SRALIVTDERMAGTPVFAELVQALAAAGVEVEVFDGVL-PDLPRSELCDAASAAARAGPDVIIGLGGGSCIDLAKIAGLL 101 (386)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHHcCCeEEEECCCC-CCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHH
Confidence 479999976543 478899999999999976542 11 23455667777777777889999999998653 33344432
Q ss_pred c------------------CCcEEEecCCC
Q 029271 129 S------------------QILVIRVPLLS 140 (196)
Q Consensus 129 t------------------~~PVIgvP~~~ 140 (196)
. ..|+|.||+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~p~i~IPTta 131 (386)
T cd08191 102 LAHGGDVRDYYGEFKVPGPVLPLIAVPTTA 131 (386)
T ss_pred HhCCCCHHHHhCccccCCCCCCEEEEeCCC
Confidence 2 68999999974
No 43
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=96.13 E-value=0.043 Score=49.77 Aligned_cols=85 Identities=20% Similarity=0.158 Sum_probs=67.3
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHH-hCCCeEEEEEc---ccCCchHHHHHHHHHhhCC---CeEEEEecCC-CCchhHh
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSD-FGVPYEIKILP---PHQNCKEALSYALSAKERG---IKIIIVGDGV-EAHLSGV 124 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~-~gi~~ev~V~S---aHR~p~~~~~~~~~~e~~~---~~V~IavAG~-sa~L~gv 124 (196)
.++.|+++..-.-.+.+++.+.|+. +++.+ .+.+ .+++.+.+.++.+.+...+ .+++|++.|+ ..-++++
T Consensus 24 ~k~livtd~~v~~~~~~~v~~~L~~~~~~~~--~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~ 101 (344)
T cd08169 24 DQYFFISDSGVADLIAHYIAEYLSKILPVHI--LVIEGGEEYKTFETVTRILERAIALGANRRTAIVAVGGGATGDVAGF 101 (344)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhhcCceE--EEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHH
Confidence 4799999887766799999999987 66654 3444 4778888888888887655 6899999887 4568889
Q ss_pred hhh--ccCCcEEEecCC
Q 029271 125 AAA--NSQILVIRVPLL 139 (196)
Q Consensus 125 vA~--~t~~PVIgvP~~ 139 (196)
+|+ +-..|.|.||+.
T Consensus 102 vA~~~~rgip~i~VPTT 118 (344)
T cd08169 102 VASTLFRGIAFIRVPTT 118 (344)
T ss_pred HHHHhccCCcEEEecCC
Confidence 987 457899999995
No 44
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=96.08 E-value=0.04 Score=50.19 Aligned_cols=88 Identities=15% Similarity=0.105 Sum_probs=65.4
Q ss_pred CeEEEEEcCCC--CHHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhH-hhhh-
Q 029271 53 PIVGIIMESDL--DLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG-VAAA- 127 (196)
Q Consensus 53 ~~V~IimGS~S--D~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~g-vvA~- 127 (196)
.++.||+|..+ .....+++.+.|++.|+++.+. =...|-+.+.+.+.++.+.+.++++||++.|+|.-=.+ .+|.
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSviD~AK~ia~~ 103 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGGGSPIDAAKAMWIF 103 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHH
Confidence 47899998654 3577799999999999976532 12368888999999999999899999999999753111 2221
Q ss_pred --------------------ccCCcEEEecCCC
Q 029271 128 --------------------NSQILVIRVPLLS 140 (196)
Q Consensus 128 --------------------~t~~PVIgvP~~~ 140 (196)
....|+|.||+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTta 136 (375)
T cd08179 104 YEYPELTFEDIVKPFTLPELRNKARFCAIPSTS 136 (375)
T ss_pred HhCCCcCHHHHhccccccccCCCCCEEEeCCCC
Confidence 1246999999964
No 45
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=96.06 E-value=0.024 Score=52.36 Aligned_cols=88 Identities=13% Similarity=0.117 Sum_probs=63.2
Q ss_pred CeEEEEEcC-CCCHHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc----hhHhhh
Q 029271 53 PIVGIIMES-DLDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH----LSGVAA 126 (196)
Q Consensus 53 ~~V~IimGS-~SD~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~----L~gvvA 126 (196)
.++.|++|. -......+++.+.|++-|+.+.+. -....-+.+.+.+.++.+++.++++||++.|+|.- .-.++.
T Consensus 50 ~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGGGS~iD~AKaia~~~ 129 (395)
T PRK15454 50 KHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGGGSVLDAAKAVALLV 129 (395)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHH
Confidence 456666653 234567899999999999987643 23456666889999999999999999999999753 112222
Q ss_pred hc---------------cCCcEEEecCCC
Q 029271 127 AN---------------SQILVIRVPLLS 140 (196)
Q Consensus 127 ~~---------------t~~PVIgvP~~~ 140 (196)
.+ ..+|+|.||+..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~P~iaIPTta 158 (395)
T PRK15454 130 TNPDSTLAEMSETSVLQPRLPLIAIPTTA 158 (395)
T ss_pred hCCCccHHHHhcccccCCCCCEEEECCCC
Confidence 11 357999999975
No 46
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=95.96 E-value=0.04 Score=50.27 Aligned_cols=88 Identities=19% Similarity=0.257 Sum_probs=62.8
Q ss_pred CeEEEEEcCCC-CHHHHHHHHHHHHHhCCCeEEEE-EcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchh----Hhhh
Q 029271 53 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIKI-LPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS----GVAA 126 (196)
Q Consensus 53 ~~V~IimGS~S-D~~~~~~~~~~l~~~gi~~ev~V-~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~----gvvA 126 (196)
.++.|++|... +....+++.+.|++.|+.+.+.- ...+-+.+.+.+.++.+...++++||++.|+|..=. ++++
T Consensus 29 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGsviD~AK~ia~~~ 108 (377)
T cd08188 29 KKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAVGGGSPIDCAKGIGIVA 108 (377)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence 58999998654 33468899999999999775421 224666777888888888888999999999864321 2222
Q ss_pred hc---------------cCCcEEEecCCC
Q 029271 127 AN---------------SQILVIRVPLLS 140 (196)
Q Consensus 127 ~~---------------t~~PVIgvP~~~ 140 (196)
.+ ...|+|.||+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~p~i~IPTT~ 137 (377)
T cd08188 109 SNGGHILDFEGVDKITRPLPPLICIPTTA 137 (377)
T ss_pred HCCCCHHHHhCcccccCCCCCEEEECCCC
Confidence 22 147999999975
No 47
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=95.93 E-value=0.042 Score=50.22 Aligned_cols=88 Identities=17% Similarity=0.219 Sum_probs=64.4
Q ss_pred CeEEEEEcCC-CCHHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc-hhHhhh---
Q 029271 53 PIVGIIMESD-LDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAA--- 126 (196)
Q Consensus 53 ~~V~IimGS~-SD~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~-L~gvvA--- 126 (196)
.++.|++|.. .+.+..+++.+.|++.|+.+.+. =...+.+.+.+.+.++.+.+.++++||++.|+|.. ++-.++
T Consensus 31 ~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~ 110 (382)
T PRK10624 31 KKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGGGSPQDTCKAIGIIS 110 (382)
T ss_pred CEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHH
Confidence 4788998754 44568999999999999976542 12256777888989888888899999999998643 221222
Q ss_pred hc-----------------cCCcEEEecCCC
Q 029271 127 AN-----------------SQILVIRVPLLS 140 (196)
Q Consensus 127 ~~-----------------t~~PVIgvP~~~ 140 (196)
.+ ...|+|.||+..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTa 141 (382)
T PRK10624 111 NNPEFADVRSLEGVAPTKKPSVPIIAIPTTA 141 (382)
T ss_pred HCCCCCCHHHHhCcCcccCCCCCEEEECCCC
Confidence 11 247999999975
No 48
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=95.90 E-value=0.082 Score=50.89 Aligned_cols=85 Identities=18% Similarity=0.126 Sum_probs=62.4
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcc---cCCchHHHHHHHHHhhC---CCeEEEEecCC-CCchhHhhh
Q 029271 54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPP---HQNCKEALSYALSAKER---GIKIIIVGDGV-EAHLSGVAA 126 (196)
Q Consensus 54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~Sa---HR~p~~~~~~~~~~e~~---~~~V~IavAG~-sa~L~gvvA 126 (196)
++.||+..... .+.+++.+.|+..|+.+...+... +++.+.+.++.+.+.+. ..+++||+.|+ ..-+++++|
T Consensus 211 k~~iV~d~~v~-~~~~~l~~~L~~~g~~v~~~v~p~~E~~ksl~~v~~~~~~l~~~~~~r~D~IIAIGGGsv~D~AKfvA 289 (542)
T PRK14021 211 KVALIHTQPVQ-RHSDRARTLLRQGGYEVSDIVIPDAEAGKTIEVANGIWQRLGNEGFTRSDAIVGLGGGAATDLAGFVA 289 (542)
T ss_pred eEEEEECccHH-HHHHHHHHHHHhCCCceEEEEeCCCcccCCHHHHHHHHHHHHhcCCCCCcEEEEEcChHHHHHHHHHH
Confidence 56677755443 477889999999898654444432 34566666666666555 36899999886 677999999
Q ss_pred h--ccCCcEEEecCC
Q 029271 127 A--NSQILVIRVPLL 139 (196)
Q Consensus 127 ~--~t~~PVIgvP~~ 139 (196)
+ .--.|+|.||+.
T Consensus 290 ~~y~rGi~~i~vPTT 304 (542)
T PRK14021 290 ATWMRGIRYVNCPTS 304 (542)
T ss_pred HHHHcCCCEEEeCCh
Confidence 7 689999999994
No 49
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=95.88 E-value=0.042 Score=50.42 Aligned_cols=88 Identities=17% Similarity=0.119 Sum_probs=64.8
Q ss_pred CeEEEEEcCC-CCHHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhH-hhh---
Q 029271 53 PIVGIIMESD-LDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG-VAA--- 126 (196)
Q Consensus 53 ~~V~IimGS~-SD~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~g-vvA--- 126 (196)
.+|.|++|+. ......+++.+.|++.|+.+.+. =...+-+.+.+.+.++.++..++++||++.|+|.-=.. +++
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGGGS~iD~AK~ia~~~ 111 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSPHDCAKGIALVA 111 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHH
Confidence 4788998753 35678889999999999975331 12347778999999999999999999999998753111 111
Q ss_pred h---------------ccCCcEEEecCCC
Q 029271 127 A---------------NSQILVIRVPLLS 140 (196)
Q Consensus 127 ~---------------~t~~PVIgvP~~~ 140 (196)
. ....|+|.||+..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~p~iaIPTTa 140 (383)
T PRK09860 112 ANGGDIRDYEGVDRSAKPQLPMIAINTTA 140 (383)
T ss_pred HCCCCHHHHhCcCccCCCCCCEEEEeCCC
Confidence 1 2468999999965
No 50
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=95.86 E-value=0.051 Score=50.35 Aligned_cols=68 Identities=13% Similarity=0.145 Sum_probs=53.7
Q ss_pred CeEEEEEcCC-CCHHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc
Q 029271 53 PIVGIIMESD-LDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH 120 (196)
Q Consensus 53 ~~V~IimGS~-SD~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~ 120 (196)
.+|.|++|.. ......+++.+.|++.|+.+.+. -...+-+.+.+.+.++.+.+.++++||++.|+|.-
T Consensus 24 ~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGSvi 93 (414)
T cd08190 24 RRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAVGGGSVI 93 (414)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHH
Confidence 4788888754 33346799999999999987642 23368888899999999999999999999999754
No 51
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=95.77 E-value=0.085 Score=48.94 Aligned_cols=87 Identities=17% Similarity=0.229 Sum_probs=62.1
Q ss_pred CeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEc-------ccCC-chHHHHHHHHHhhCCCe---EEEEecCC-
Q 029271 53 PIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILP-------PHQN-CKEALSYALSAKERGIK---IIIVGDGV- 117 (196)
Q Consensus 53 ~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~S-------aHR~-p~~~~~~~~~~e~~~~~---V~IavAG~- 117 (196)
.++.||+++.-. .+..+++.+.|+.-|+++++...- ..+. ++.+.++.+.+...+++ ++|++.|+
T Consensus 43 ~r~liVtD~~v~~~~~~l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiGGGs 122 (389)
T PRK06203 43 KKVLVVIDSGVLRAHPDLLEQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINRHGIDRHSYVLAIGGGA 122 (389)
T ss_pred CeEEEEECchHHHhhhhHHHHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHHcCCCCCceEEEeCCcH
Confidence 579999865443 245688888888888876532211 2344 36688888888777775 99999888
Q ss_pred CCchhHhhhh--ccCCcEEEecCC
Q 029271 118 EAHLSGVAAA--NSQILVIRVPLL 139 (196)
Q Consensus 118 sa~L~gvvA~--~t~~PVIgvP~~ 139 (196)
..-+++.+|+ +-..|.|.||+.
T Consensus 123 v~D~ak~iA~~~~rgip~I~IPTT 146 (389)
T PRK06203 123 VLDMVGYAAATAHRGVRLIRIPTT 146 (389)
T ss_pred HHHHHHHHHHHhcCCCCEEEEcCC
Confidence 4568888886 335799999996
No 52
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=95.77 E-value=0.05 Score=48.65 Aligned_cols=87 Identities=16% Similarity=0.109 Sum_probs=61.4
Q ss_pred CeEEEEEcCCC-CHHHHHHHHHHHHHhCCCeEE-EEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc-hhHhhhh--
Q 029271 53 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAA-- 127 (196)
Q Consensus 53 ~~V~IimGS~S-D~~~~~~~~~~l~~~gi~~ev-~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~-L~gvvA~-- 127 (196)
.++.|++|... +....+++.+.|+.- +.+.+ .-...+.+.+.+.+.++.+.+.++++||++.|+|.. .+..++.
T Consensus 23 ~~~lvv~~~~~~~~g~~~~v~~~l~~~-~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~aKa~a~~~ 101 (332)
T cd08180 23 KRVLIVTDPFMVKSGMLDKVTDHLDSS-IEVEIFSDVVPDPPIEVVAKGIKKFLDFKPDIVIALGGGSAIDAAKAIIYFA 101 (332)
T ss_pred CeEEEEeCchhhhCccHHHHHHHHHhc-CcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHH
Confidence 47888887543 334677888888765 55432 122467788888899998888899999999998765 3433332
Q ss_pred -c----cCCcEEEecCCC
Q 029271 128 -N----SQILVIRVPLLS 140 (196)
Q Consensus 128 -~----t~~PVIgvP~~~ 140 (196)
+ ...|+|.||+..
T Consensus 102 ~~~~~~~~~p~i~VPTta 119 (332)
T cd08180 102 KKLGKKKKPLFIAIPTTS 119 (332)
T ss_pred hCCCCCCCCCEEEeCCCC
Confidence 2 247999999964
No 53
>PRK10586 putative oxidoreductase; Provisional
Probab=95.74 E-value=0.052 Score=49.72 Aligned_cols=86 Identities=9% Similarity=0.019 Sum_probs=63.5
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc-hhHhhhhccCC
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAANSQI 131 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~-L~gvvA~~t~~ 131 (196)
.++.||+|..+=.....++...|++-|+.+ .+.+-+-+.+.+.++.+..+ .++++||++.|++.. .+=.+|.....
T Consensus 35 ~~~lvv~g~~~~~~~~~~~~~~l~~~~~~~--~~~~g~~~~~~v~~l~~~~~-~~~d~iiavGGGs~iD~aK~~a~~~~~ 111 (362)
T PRK10586 35 SRAVWIYGERAIAAAQPYLPPAFELPGAKH--ILFRGHCSESDVAQLAAASG-DDRQVVIGVGGGALLDTAKALARRLGL 111 (362)
T ss_pred CeEEEEEChHHHHHHHHHHHHHHHHcCCeE--EEeCCCCCHHHHHHHHHHhc-cCCCEEEEecCcHHHHHHHHHHhhcCC
Confidence 479999998776666677788899888754 34445556777777766554 478999999997653 44466777889
Q ss_pred cEEEecCCCC
Q 029271 132 LVIRVPLLSE 141 (196)
Q Consensus 132 PVIgvP~~~~ 141 (196)
|+|.||+..+
T Consensus 112 p~i~vPT~a~ 121 (362)
T PRK10586 112 PFVAIPTIAA 121 (362)
T ss_pred CEEEEeCCcc
Confidence 9999999753
No 54
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=95.28 E-value=0.16 Score=47.04 Aligned_cols=87 Identities=20% Similarity=0.262 Sum_probs=63.3
Q ss_pred CeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEE--E--Ec---ccCCc-hHHHHHHHHHhhCCCe---EEEEecCC-
Q 029271 53 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIK--I--LP---PHQNC-KEALSYALSAKERGIK---IIIVGDGV- 117 (196)
Q Consensus 53 ~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~--V--~S---aHR~p-~~~~~~~~~~e~~~~~---V~IavAG~- 117 (196)
.++.||+.+.-.- +..+++...|+.-|+.+++. + .. .++++ +.+.++.+.+.+.+++ ++|++.|+
T Consensus 31 ~r~lvVtD~~v~~~~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIalGGG~ 110 (369)
T cd08198 31 PKVLVVIDSGVAQANPQLASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINRHGIDRHSYVIAIGGGA 110 (369)
T ss_pred CeEEEEECcchHHhhhhHHHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEEECChH
Confidence 4789998875554 44578888888778765422 2 11 34553 6677788888887775 99999888
Q ss_pred CCchhHhhhh--ccCCcEEEecCC
Q 029271 118 EAHLSGVAAA--NSQILVIRVPLL 139 (196)
Q Consensus 118 sa~L~gvvA~--~t~~PVIgvP~~ 139 (196)
..-+++++|+ +--.|.|.+|+.
T Consensus 111 v~D~ag~vA~~~~rGip~I~IPTT 134 (369)
T cd08198 111 VLDAVGYAAATAHRGVRLIRIPTT 134 (369)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCC
Confidence 5668999987 446899999997
No 55
>PRK15138 aldehyde reductase; Provisional
Probab=95.26 E-value=0.076 Score=48.89 Aligned_cols=66 Identities=14% Similarity=0.120 Sum_probs=48.7
Q ss_pred CeEEEEEcCCC--CHHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc
Q 029271 53 PIVGIIMESDL--DLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH 120 (196)
Q Consensus 53 ~~V~IimGS~S--D~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~ 120 (196)
.++.|++|+.| -....+++.+.|+ |+.+.+. -...+-+.+.+.+.++.+++.++++||++.|+|.-
T Consensus 30 ~~~livt~~~~~~~~g~~~~v~~~L~--~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~i 98 (387)
T PRK15138 30 ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPTYETLMKAVKLVREEKITFLLAVGGGSVL 98 (387)
T ss_pred CeEEEECCCchHHhcCcHHHHHHHhc--CCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChHHH
Confidence 57999988654 2345677887876 6654332 12467788899999999999999999999998653
No 56
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=95.07 E-value=0.083 Score=49.07 Aligned_cols=88 Identities=17% Similarity=0.155 Sum_probs=74.4
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCC-CchhHhhhhccCC
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANSQI 131 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~s-a~L~gvvA~~t~~ 131 (196)
.++.|++|-..---..++..+.|+..|+ ...-+..-+-+-+++.++.+.....+++++|++.|+. --.+=++|-...+
T Consensus 31 ~~~lvv~g~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~a~~~ev~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~~~~ 109 (360)
T COG0371 31 SRALVVTGENTYAIAGEKVEKSLKDEGL-VVHVVFVGEASEEEVERLAAEAGEDGADVVIGVGGGKTIDTAKAAAYRLGL 109 (360)
T ss_pred CceEEEEChhHHHHHHHHHHHHhcccCc-ceeeeecCccCHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHcCC
Confidence 5899999999999999999999999998 4444555777889999998888767789999998874 4578888999999
Q ss_pred cEEEecCCCC
Q 029271 132 LVIRVPLLSE 141 (196)
Q Consensus 132 PVIgvP~~~~ 141 (196)
|+|.||+..+
T Consensus 110 pfIsvPT~AS 119 (360)
T COG0371 110 PFISVPTIAS 119 (360)
T ss_pred CEEEecCccc
Confidence 9999999864
No 57
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=95.02 E-value=0.22 Score=45.51 Aligned_cols=83 Identities=12% Similarity=0.100 Sum_probs=64.2
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEc---ccCCchHHHHHHHHHhhCCC---eEEEEecCCC-CchhHhh
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGI---KIIIVGDGVE-AHLSGVA 125 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~S---aHR~p~~~~~~~~~~e~~~~---~V~IavAG~s-a~L~gvv 125 (196)
.++.||+...-.--+.+.+.+.|+ ++. +.+.+ .+++.+.+.+..+.+...++ +++|++.|++ .-+++++
T Consensus 20 ~r~lIVtD~~v~~l~~~~l~~~L~--~~~--~~~~~~~e~~k~l~~v~~~~~~~~~~~~~r~d~iIaiGGGsv~D~ak~v 95 (346)
T cd08196 20 ENDVFIVDANVAELYRDRLDLPLD--AAP--VIAIDATEENKSLEAVSSVIESLRQNGARRNTHLVAIGGGIIQDVTTFV 95 (346)
T ss_pred CeEEEEECccHHHHHHHHHHHHhc--CCe--EEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHH
Confidence 478888877554447777777776 443 33443 59999999999999999888 7999999884 5699999
Q ss_pred hh--ccCCcEEEecCC
Q 029271 126 AA--NSQILVIRVPLL 139 (196)
Q Consensus 126 A~--~t~~PVIgvP~~ 139 (196)
|+ .-..|.|.+|+.
T Consensus 96 A~~~~rgi~~i~iPTT 111 (346)
T cd08196 96 ASIYMRGVSWSFVPTT 111 (346)
T ss_pred HHHHHcCCCeEEeccc
Confidence 85 457799999984
No 58
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=94.72 E-value=0.38 Score=46.68 Aligned_cols=129 Identities=14% Similarity=0.136 Sum_probs=88.9
Q ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHH-HHHhhCCCeEEEEecCCCCchhHhhhhccC
Q 029271 52 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYA-LSAKERGIKIIIVGDGVEAHLSGVAAANSQ 130 (196)
Q Consensus 52 ~~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~-~~~e~~~~~V~IavAG~sa~L~gvvA~~t~ 130 (196)
.|+|..+ |.|. ..+.+..++.+|+...++++ .....++..+++ ++++.++++|||+-.|. +..+-..++
T Consensus 14 ~p~~~~~--~~~~--l~~~~~~i~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~dviIsrG~t----a~~i~~~~~ 83 (538)
T PRK15424 14 KPVIWTV--SVSR--LFELFRDISLEFDHLANITP--IQLGFEKAVTYIRKRLATERCDAIIAAGSN----GAYLKSRLS 83 (538)
T ss_pred CCeEEEe--eHHH--HHHHHHHHHHhcCCCceEEe--hhhhHHHHHHHHHHHHhhCCCcEEEECchH----HHHHHhhCC
Confidence 3444443 4444 56677788888887666554 457788888888 55778899999995554 455667789
Q ss_pred CcEEEecCCCCCCChhhhhhhhcCCCCC--eeeEEecCChhhHHHHHHHHHccC--------CHHHHHHHHHHHh
Q 029271 131 ILVIRVPLLSEDWSEDDVINSIRMPSHV--QVASVPRNNAKNAALYAVKVLGIA--------DEDLLERIRKYVE 195 (196)
Q Consensus 131 ~PVIgvP~~~~~~~G~DLlS~lqmPsGv--pvatV~I~~~~nAA~~AaqILa~~--------d~~l~~kl~~~r~ 195 (196)
+|||-++++ |.|++..+.-.... .+++|+-.+-...+..-.++|++. .++++..++..++
T Consensus 84 iPVv~i~~s-----~~Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~i~~~~~~~~~e~~~~v~~lk~ 153 (538)
T PRK15424 84 VPVILIKPS-----GFDVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLRIEQRSYVTEEDARGQINELKA 153 (538)
T ss_pred CCEEEecCC-----HhHHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHH
Confidence 999999875 46755555432222 378887788888888778888763 3467777766654
No 59
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=94.69 E-value=0.11 Score=42.58 Aligned_cols=81 Identities=20% Similarity=0.271 Sum_probs=51.8
Q ss_pred CchHHHHHHHHH-hhCCCeEEEEecCCCCchhHhhhhccCCcEEEecCCCCCCChhhhhhhhcC-CC-CCeeeEEecCCh
Q 029271 92 NCKEALSYALSA-KERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRM-PS-HVQVASVPRNNA 168 (196)
Q Consensus 92 ~p~~~~~~~~~~-e~~~~~V~IavAG~sa~L~gvvA~~t~~PVIgvP~~~~~~~G~DLlS~lqm-Ps-GvpvatV~I~~~ 168 (196)
+.++..+.++++ +.+|++|||+-.| -+-.+..+++.|||.+|++ +.|++..++. .. |-.++.|+-.+.
T Consensus 18 ~~e~~v~~a~~~~~~~g~dViIsRG~----ta~~lr~~~~iPVV~I~~s-----~~Dil~al~~a~~~~~~Iavv~~~~~ 88 (176)
T PF06506_consen 18 SLEEAVEEARQLLESEGADVIISRGG----TAELLRKHVSIPVVEIPIS-----GFDILRALAKAKKYGPKIAVVGYPNI 88 (176)
T ss_dssp -HHHHHHHHHHHHTTTT-SEEEEEHH----HHHHHHCC-SS-EEEE--------HHHHHHHHHHCCCCTSEEEEEEESS-
T ss_pred cHHHHHHHHHHhhHhcCCeEEEECCH----HHHHHHHhCCCCEEEECCC-----HhHHHHHHHHHHhcCCcEEEEecccc
Confidence 558888999998 8899999999554 4566777889999999975 4674444443 22 223788877777
Q ss_pred hhHHHHHHHHHcc
Q 029271 169 KNAALYAVKVLGI 181 (196)
Q Consensus 169 ~nAA~~AaqILa~ 181 (196)
..-.....++|++
T Consensus 89 ~~~~~~~~~ll~~ 101 (176)
T PF06506_consen 89 IPGLESIEELLGV 101 (176)
T ss_dssp SCCHHHHHHHHT-
T ss_pred cHHHHHHHHHhCC
Confidence 6656666777776
No 60
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=93.94 E-value=0.39 Score=44.85 Aligned_cols=88 Identities=20% Similarity=0.249 Sum_probs=69.2
Q ss_pred CeEEEEEcCC-CCHHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc----hhHhhh
Q 029271 53 PIVGIIMESD-LDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH----LSGVAA 126 (196)
Q Consensus 53 ~~V~IimGS~-SD~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~----L~gvvA 126 (196)
.++.||++.. ......+++.+.|+.-||+|.+. =...+-+-+.+.+-++.+++.+++.||++.|+|.. +-.+++
T Consensus 30 ~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIalGGGS~~D~AK~i~~~~ 109 (377)
T COG1454 30 KRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIALGGGSVIDAAKAIALLA 109 (377)
T ss_pred CceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHh
Confidence 4788998664 66789999999999999887753 23477777888888899999999999999999853 344444
Q ss_pred hcc---------------CCcEEEecCCC
Q 029271 127 ANS---------------QILVIRVPLLS 140 (196)
Q Consensus 127 ~~t---------------~~PVIgvP~~~ 140 (196)
.+. ..|+|.+|+..
T Consensus 110 ~~~~~~~~~~~i~~~~~~~~plIaIPTTa 138 (377)
T COG1454 110 ENPGSVLDYEGIGKVKKPKAPLIAIPTTA 138 (377)
T ss_pred hCCchhhhhcccccccCCCCCEEEecCCC
Confidence 433 17999999975
No 61
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=93.90 E-value=0.35 Score=48.93 Aligned_cols=65 Identities=17% Similarity=0.190 Sum_probs=50.8
Q ss_pred CeEEEEEcCCC-CHHHHHHHHHHHH--HhCCCeEEEEEc---ccCCchHHHHHHHHHhhCCCeEEEEecCCCC
Q 029271 53 PIVGIIMESDL-DLPVMNDAARTLS--DFGVPYEIKILP---PHQNCKEALSYALSAKERGIKIIIVGDGVEA 119 (196)
Q Consensus 53 ~~V~IimGS~S-D~~~~~~~~~~l~--~~gi~~ev~V~S---aHR~p~~~~~~~~~~e~~~~~V~IavAG~sa 119 (196)
.++.||+|... +....+++.+.|+ ..|+.+ .+.+ .+.+.+.+.+.++.+.+.++++||++.|+|.
T Consensus 481 ~~~lvVtd~~~~~~g~~~~v~~~L~~~~~~i~~--~~~~~v~~np~~~~v~~~~~~~~~~~~D~IIaiGGGSv 551 (862)
T PRK13805 481 KRAFIVTDRFMVELGYVDKVTDVLKKRENGVEY--EVFSEVEPDPTLSTVRKGAELMRSFKPDTIIALGGGSP 551 (862)
T ss_pred CEEEEEECcchhhcchHHHHHHHHhcccCCCeE--EEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 58999997543 3447888999998 666654 3433 5788899999999999999999999999864
No 62
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=93.62 E-value=4.2 Score=34.89 Aligned_cols=112 Identities=13% Similarity=0.154 Sum_probs=66.5
Q ss_pred CCeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh-
Q 029271 52 APIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA- 127 (196)
Q Consensus 52 ~~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~- 127 (196)
+..|++++.+.+| ....+.+.+.++++|. .+-+......+++..++++.+...+++-+|........ ...+.-
T Consensus 60 ~~~Igvi~~~~~~~~~~~~~~~i~~~~~~~gy--~~~i~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~~~~l 136 (327)
T TIGR02417 60 SRTIGLVIPDLENYSYARIAKELEQQCREAGY--QLLIACSDDNPDQEKVVIENLLARQVDALIVASCMPPE-DAYYQKL 136 (327)
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC-hHHHHHH
Confidence 4579999875544 3445667777778886 55566666778888888888888888755554432211 122222
Q ss_pred -ccCCcEEEecCCCCCCChhhhhhhhcCCCCCeeeEEecCChhhHHHHHHHHHcc
Q 029271 128 -NSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGI 181 (196)
Q Consensus 128 -~t~~PVIgvP~~~~~~~G~DLlS~lqmPsGvpvatV~I~~~~nAA~~AaqILa~ 181 (196)
....||+-+=... ++.++..|..||-.++.+++-.++..
T Consensus 137 ~~~~iPvV~~~~~~---------------~~~~~~~V~~dn~~~~~~~~~~L~~~ 176 (327)
T TIGR02417 137 QNEGLPVVALDRSL---------------DDEHFCSVISDDVDAAAELIERLLSQ 176 (327)
T ss_pred HhcCCCEEEEcccc---------------CCCCCCEEEeCcHHHHHHHHHHHHHC
Confidence 2457887542211 11123456678877777666555543
No 63
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=93.54 E-value=1.2 Score=43.15 Aligned_cols=117 Identities=10% Similarity=0.116 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhCCCeEEEEEcccCCchHHHHHH-HHHhhCCCeEEEEecCCCCchhHhhhhccCCcEEEecCCCCCCChh
Q 029271 68 MNDAARTLSDFGVPYEIKILPPHQNCKEALSYA-LSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSED 146 (196)
Q Consensus 68 ~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~-~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PVIgvP~~~~~~~G~ 146 (196)
.+-+.++..++.-..++.| .-...++..+++ +.++.+|++|||+-.| -+.++-..+++|||-++++ |.
T Consensus 16 ~~~~~~i~~~~~~~~~~~v--~~~~~~~~~~~a~~~~~~~~~dviIsrG~----ta~~i~~~~~iPVv~i~~s-----~~ 84 (526)
T TIGR02329 16 FDLFRDIAPEFDHRANITP--IQLGFEDAVREIRQRLGAERCDVVVAGGS----NGAYLKSRLSLPVIVIKPT-----GF 84 (526)
T ss_pred HHHHHHHHHhCCCCceEEE--EeccHHHHHHHHHHHHHhCCCcEEEECch----HHHHHHHhCCCCEEEecCC-----hh
Confidence 3445555566664333443 234557888877 5577788999999555 4556667889999999875 46
Q ss_pred hhhhhhcCCCCC--eeeEEecCChhhHHHHHHHHHccC--------CHHHHHHHHHHHh
Q 029271 147 DVINSIRMPSHV--QVASVPRNNAKNAALYAVKVLGIA--------DEDLLERIRKYVE 195 (196)
Q Consensus 147 DLlS~lqmPsGv--pvatV~I~~~~nAA~~AaqILa~~--------d~~l~~kl~~~r~ 195 (196)
|++..+...... .+++||-.+-...+..-..+|++. .++++..++..++
T Consensus 85 Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~ 143 (526)
T TIGR02329 85 DVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRA 143 (526)
T ss_pred hHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHH
Confidence 755555432222 378888888888888888888763 3466777766654
No 64
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=93.31 E-value=0.57 Score=42.77 Aligned_cols=84 Identities=13% Similarity=-0.009 Sum_probs=55.8
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhC---CCeEEEEecCCCCchhH-hhh--
Q 029271 54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKER---GIKIIIVGDGVEAHLSG-VAA-- 126 (196)
Q Consensus 54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~---~~~V~IavAG~sa~L~g-vvA-- 126 (196)
++.|+++. +-.. +++.+.|+..|+.+.+. -....-+.+.+.+.++.++.. ++++||++.|+|.-=.+ .+|
T Consensus 27 ~~lvvtd~-~~~~--~~v~~~L~~~g~~~~~f~~v~~nPt~~~v~~~~~~~~~~~~~~~D~IIaiGGGS~iD~AKaia~~ 103 (347)
T cd08184 27 PAVFFVDD-VFQG--KDLISRLPVESEDMIIWVDATEEPKTDQIDALTAQVKSFDGKLPCAIVGIGGGSTLDVAKAVSNM 103 (347)
T ss_pred eEEEEECc-chhh--hHHHHHHHhcCCcEEEEcCCCCCcCHHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHH
Confidence 46677753 3333 67777888889886653 123566667788888888776 89999999998642111 111
Q ss_pred -h---------------ccCCcEEEecCCC
Q 029271 127 -A---------------NSQILVIRVPLLS 140 (196)
Q Consensus 127 -~---------------~t~~PVIgvP~~~ 140 (196)
. ....|+|.||+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~PlIaVPTTa 133 (347)
T cd08184 104 LTNPGSAEDYQGWDLVKNPAVYKIGIPTLS 133 (347)
T ss_pred HhCCCCHHHhcccccccCCCCcEEEEeCCC
Confidence 1 1247899999964
No 65
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=93.19 E-value=0.34 Score=42.13 Aligned_cols=83 Identities=18% Similarity=0.114 Sum_probs=56.7
Q ss_pred eEEEEEcCCCC--HHHHHHHHHHHHHhCCCe---EEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhc
Q 029271 54 IVGIIMESDLD--LPVMNDAARTLSDFGVPY---EIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN 128 (196)
Q Consensus 54 ~V~IimGS~SD--~~~~~~~~~~l~~~gi~~---ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~ 128 (196)
+|+|+--...| -+..+..++.|++.|+.. ++.+..+.+.++.+.++++++.....++||++...++ .. +..-.
T Consensus 1 ~v~i~~~~~~~~~~~~~~gf~~~L~~~g~~~~~~~~~~~~a~~d~~~~~~~~~~l~~~~~DlIi~~gt~aa-~~-~~~~~ 78 (294)
T PF04392_consen 1 KVGILQFISHPALDDIVRGFKDGLKELGYDEKNVEIEYKNAEGDPEKLRQIARKLKAQKPDLIIAIGTPAA-QA-LAKHL 78 (294)
T ss_dssp EEEEEESS--HHHHHHHHHHHHHHHHTT--CCCEEEEEEE-TT-HHHHHHHHHHHCCTS-SEEEEESHHHH-HH-HHHH-
T ss_pred CeEEEEEeccHHHHHHHHHHHHHHHHcCCccccEEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeCcHHH-HH-HHHhc
Confidence 35666554444 567788899999999975 7888999999999999999998888899999855443 22 33334
Q ss_pred cC-CcEEEecC
Q 029271 129 SQ-ILVIRVPL 138 (196)
Q Consensus 129 t~-~PVIgvP~ 138 (196)
.. .||+-|-+
T Consensus 79 ~~~iPVVf~~V 89 (294)
T PF04392_consen 79 KDDIPVVFCGV 89 (294)
T ss_dssp SS-S-EEEECE
T ss_pred CCCcEEEEEec
Confidence 45 89999888
No 66
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=93.11 E-value=0.81 Score=39.74 Aligned_cols=82 Identities=16% Similarity=0.133 Sum_probs=43.7
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhCCCeE--EEEEcc-----cCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh
Q 029271 54 IVGIIMESDLDLPVMNDAARTLSDFGVPYE--IKILPP-----HQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA 126 (196)
Q Consensus 54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~e--v~V~Sa-----HR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA 126 (196)
...|++|..-|..........+ +.+.++ +.+.+. .++.....++.+.......+++++.......+++.++
T Consensus 30 ~~~~~tg~h~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvV~~~g~~~~~~~~~~a 107 (363)
T cd03786 30 LVLVVTGQHYDMEMGVTFFEIL--FIIKPDYDLLLGSDSQSLGAQTAGLLIGLEAVLLEEKPDLVLVLGDTNETLAAALA 107 (363)
T ss_pred EEEEEeCCCCChhhhHHHHHhh--CCCCCCEEEecCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHH
Confidence 3445555555555555554444 333332 222221 1122233444444555567888887556667766665
Q ss_pred h-ccCCcEEEec
Q 029271 127 A-NSQILVIRVP 137 (196)
Q Consensus 127 ~-~t~~PVIgvP 137 (196)
+ ....||+.+.
T Consensus 108 a~~~~iPvv~~~ 119 (363)
T cd03786 108 AFKLGIPVAHVE 119 (363)
T ss_pred HHHcCCCEEEEe
Confidence 5 5788999864
No 67
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=93.06 E-value=3.8 Score=33.36 Aligned_cols=80 Identities=14% Similarity=0.083 Sum_probs=49.0
Q ss_pred EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCC
Q 029271 55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI 131 (196)
Q Consensus 55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~ 131 (196)
|+++..+.+| ....+.+.+.++++|+.+ .+......++...++++.+...+++-+|..........---.-....
T Consensus 2 igvi~~~~~~~~~~~~~~~i~~~a~~~g~~~--~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~~~~~~~l~~~~~~~i 79 (267)
T cd06283 2 IGVIVADITNPFSSLVLKGIEDVCRAHGYQV--LVCNSDNDPEKEKEYLESLLAYQVDGLIVNPTGNNKELYQRLAKNGK 79 (267)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHHcCCEE--EEEcCCCCHHHHHHHHHHHHHcCcCEEEEeCCCCChHHHHHHhcCCC
Confidence 6677766555 556678888889998654 44545556677778888888888875555443322211001123457
Q ss_pred cEEEe
Q 029271 132 LVIRV 136 (196)
Q Consensus 132 PVIgv 136 (196)
|||.+
T Consensus 80 pvV~~ 84 (267)
T cd06283 80 PVVLV 84 (267)
T ss_pred CEEEE
Confidence 88876
No 68
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=92.91 E-value=4.4 Score=33.35 Aligned_cols=79 Identities=15% Similarity=0.190 Sum_probs=48.7
Q ss_pred EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCC
Q 029271 55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI 131 (196)
Q Consensus 55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~ 131 (196)
|+++....+| ....+.+.+.++++|. ++-+...+..++...++++.....+++-+|...- .....-.-.-....
T Consensus 2 Ig~i~p~~~~~~~~~~~~~i~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~-~~~~~~~~~~~~~i 78 (263)
T cd06280 2 VGLIVADIRNPFFTAVSRAVEDAAYRAGL--RVILCNTDEDPEKEAMYLELMEEERVTGVIFAPT-RATLRRLAELRLSF 78 (263)
T ss_pred EEEEecccccccHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC-CCCchHHHHHhcCC
Confidence 5666655443 3455677788889985 4556666778888778888888888875555432 22222111112356
Q ss_pred cEEEe
Q 029271 132 LVIRV 136 (196)
Q Consensus 132 PVIgv 136 (196)
|||.+
T Consensus 79 PvV~~ 83 (263)
T cd06280 79 PVVLI 83 (263)
T ss_pred CEEEE
Confidence 88876
No 69
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=92.90 E-value=4.5 Score=33.15 Aligned_cols=82 Identities=9% Similarity=0.105 Sum_probs=50.1
Q ss_pred EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchh-HhhhhccC
Q 029271 55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS-GVAAANSQ 130 (196)
Q Consensus 55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~-gvvA~~t~ 130 (196)
|+++..+.++ ....+.+.+.++++|.. +.+......+++..+.++....++++.+|.......... ..+.....
T Consensus 2 igvi~~~~~~~~~~~~~~gi~~~~~~~g~~--~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l~~~~~ 79 (269)
T cd06275 2 IGMLVTTSTNPFFAEVVRGVEQYCYRQGYN--LILCNTEGDPERQRSYLRMLAQKRVDGLLVMCSEYDQPLLAMLERYRH 79 (269)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHcCCE--EEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCCCChHHHHHHHhcCC
Confidence 6777765433 33455677778888864 445556778888888888888888875555443322211 22322346
Q ss_pred CcEEEecC
Q 029271 131 ILVIRVPL 138 (196)
Q Consensus 131 ~PVIgvP~ 138 (196)
.||+-+-.
T Consensus 80 ipvV~i~~ 87 (269)
T cd06275 80 IPMVVMDW 87 (269)
T ss_pred CCEEEEec
Confidence 78876543
No 70
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=92.67 E-value=0.98 Score=42.05 Aligned_cols=89 Identities=20% Similarity=0.216 Sum_probs=65.0
Q ss_pred HHHhCCCeEEEE-Eccc--CCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh-ccCCcEEEecCCCCCCChhhhhh
Q 029271 75 LSDFGVPYEIKI-LPPH--QNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA-NSQILVIRVPLLSEDWSEDDVIN 150 (196)
Q Consensus 75 l~~~gi~~ev~V-~SaH--R~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~-~t~~PVIgvP~~~~~~~G~DLlS 150 (196)
++.++.+|++-. --.. -|-+.+...++++.++|+++ |++||+.+..--+.++ --..||+|+|.-...
T Consensus 65 ~~~~~~~~~v~~~~~~~~~tTa~DT~~~~r~~~~~gVdl-IvfaGGDGTarDVa~av~~~vPvLGipaGvk~-------- 135 (355)
T COG3199 65 AEASGFKYRVIRFQESTPRTTAEDTINAVRRMVERGVDL-IVFAGGDGTARDVAEAVGADVPVLGIPAGVKN-------- 135 (355)
T ss_pred HHhhcCcceEEeecccCCCccHHHHHHHHHHHHhcCceE-EEEeCCCccHHHHHhhccCCCceEeeccccce--------
Confidence 356666776552 1111 34578888999999999875 5678888888888888 889999999985532
Q ss_pred hhcCCCCCeeeEEecCChhhHHHHHHHHHcc
Q 029271 151 SIRMPSHVQVASVPRNNAKNAALYAVKVLGI 181 (196)
Q Consensus 151 ~lqmPsGvpvatV~I~~~~nAA~~AaqILa~ 181 (196)
-||+ . -..|+.||.++.+++.-
T Consensus 136 ----~Sgv--f---A~~P~~aa~l~~~~lkg 157 (355)
T COG3199 136 ----YSGV--F---ALSPEDAARLLGAFLKG 157 (355)
T ss_pred ----eccc--c---ccChHHHHHHHHHHhcc
Confidence 2443 2 25899999999998876
No 71
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=92.32 E-value=0.72 Score=33.68 Aligned_cols=74 Identities=14% Similarity=0.003 Sum_probs=47.5
Q ss_pred CeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhcc
Q 029271 53 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS 129 (196)
Q Consensus 53 ~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t 129 (196)
..|.|+|-|++|. ++|.++++.|+++|++|+..=...+ + +..+.+.+ .+|..
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~--~-~~~~~l~~----------------------~~g~~ 62 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED--E-EVRQGLKE----------------------YSNWP 62 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC--H-HHHHHHHH----------------------HhCCC
Confidence 4688898877655 5777999999999999886554433 2 23222221 23566
Q ss_pred CCcEEEecCCCCCCChhh-hhhhhc
Q 029271 130 QILVIRVPLLSEDWSEDD-VINSIR 153 (196)
Q Consensus 130 ~~PVIgvP~~~~~~~G~D-LlS~lq 153 (196)
+.|+|=+ .+...+|.| +....+
T Consensus 63 tvP~vfi--~g~~iGG~~~l~~l~~ 85 (90)
T cd03028 63 TFPQLYV--NGELVGGCDIVKEMHE 85 (90)
T ss_pred CCCEEEE--CCEEEeCHHHHHHHHH
Confidence 7777743 333467777 776554
No 72
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=92.17 E-value=0.74 Score=41.76 Aligned_cols=87 Identities=10% Similarity=0.087 Sum_probs=57.9
Q ss_pred CeEEEEEcCCC-CHHHHHHHHHHHHHhCCCeEE-EEEcccCCchHHHHHHHHHhhCC--CeEEEEecCCCCc-hhHhhhh
Q 029271 53 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERG--IKIIIVGDGVEAH-LSGVAAA 127 (196)
Q Consensus 53 ~~V~IimGS~S-D~~~~~~~~~~l~~~gi~~ev-~V~SaHR~p~~~~~~~~~~e~~~--~~V~IavAG~sa~-L~gvvA~ 127 (196)
.+|.|+++... +....+++.+.|+.. .+.+ .=.-.+.+.+.+.+..+.+...+ +++||++.|+|.. .+..+|.
T Consensus 24 ~r~lvVtd~~~~~~g~~~~v~~~L~~~--~~~~~~~v~~~pt~~~v~~~~~~~~~~~~~~D~IIaiGGGSviD~aK~ia~ 101 (355)
T TIGR03405 24 RRVVVVTFPEARALGLARRLEALLGGR--LAALIDDVAPNPDVAQLDGLYARLWGDEGACDLVIALGGGSVIDTAKVLAV 101 (355)
T ss_pred CeEEEEECcchhhcchHHHHHHHhccC--cEEEeCCCCCCcCHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHH
Confidence 47899997543 346677777777643 2222 11235788888888888887766 8999999999753 2223222
Q ss_pred c----------------------cCCcEEEecCCCC
Q 029271 128 N----------------------SQILVIRVPLLSE 141 (196)
Q Consensus 128 ~----------------------t~~PVIgvP~~~~ 141 (196)
. ...|+|.||+..+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTTag 137 (355)
T TIGR03405 102 GLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTTAG 137 (355)
T ss_pred HHhCCCcccHHHHHhcCCccCCCCCCCEEEEcCCCc
Confidence 1 2479999999653
No 73
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=91.79 E-value=5.8 Score=32.54 Aligned_cols=81 Identities=22% Similarity=0.265 Sum_probs=63.8
Q ss_pred EEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhcc--
Q 029271 55 VGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS-- 129 (196)
Q Consensus 55 V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t-- 129 (196)
|+|++.+.++- ...+.+.+.++++|+.+++. ....-.+++..+.++++-+++++.||....-...+...+.-..
T Consensus 1 I~vi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~-~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~~ 79 (257)
T PF13407_consen 1 IGVIVPSMDNPFWQQVIKGAKAAAKELGYEVEIV-FDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKAA 79 (257)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHHHTCEEEEE-EESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHHT
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEe-CCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhhc
Confidence 67888888884 24457778888999876655 6788899999999999999999988888777777777776543
Q ss_pred CCcEEEe
Q 029271 130 QILVIRV 136 (196)
Q Consensus 130 ~~PVIgv 136 (196)
..|||.+
T Consensus 80 gIpvv~~ 86 (257)
T PF13407_consen 80 GIPVVTV 86 (257)
T ss_dssp TSEEEEE
T ss_pred CceEEEE
Confidence 5799874
No 74
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=91.63 E-value=0.79 Score=42.15 Aligned_cols=76 Identities=18% Similarity=0.234 Sum_probs=55.4
Q ss_pred HHHHHHHHHHH-HhCCCeEEEEEcccC-----CchHHHHHHHHHhh-CCCeEEEEecCCCCchhHhhhhcc----CCcEE
Q 029271 66 PVMNDAARTLS-DFGVPYEIKILPPHQ-----NCKEALSYALSAKE-RGIKIIIVGDGVEAHLSGVAAANS----QILVI 134 (196)
Q Consensus 66 ~~~~~~~~~l~-~~gi~~ev~V~SaHR-----~p~~~~~~~~~~e~-~~~~V~IavAG~sa~L~gvvA~~t----~~PVI 134 (196)
...++.++.++ +.+=||-+-.-++|- .-+-.+|+..+.+. ..++-+|++.|..+..+|++++.. ..+||
T Consensus 132 ~~~~~~~e~~~~~g~kpyvIp~GG~~~~g~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~Vi 211 (323)
T COG2515 132 ASAEELAEEVRKQGGKPYVIPEGGSSPLGALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVI 211 (323)
T ss_pred hhhHHHHHHHHhcCCCCcEeccCCcCccccccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceE
Confidence 56667777666 555566654444222 12456677777665 567999999999999999999987 89999
Q ss_pred EecCCCC
Q 029271 135 RVPLLSE 141 (196)
Q Consensus 135 gvP~~~~ 141 (196)
|||++..
T Consensus 212 G~~v~~~ 218 (323)
T COG2515 212 GIDVSAD 218 (323)
T ss_pred EEeecCC
Confidence 9999874
No 75
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=91.59 E-value=0.53 Score=40.73 Aligned_cols=78 Identities=14% Similarity=0.123 Sum_probs=49.9
Q ss_pred CCeEEEEEcCCCCHHHH-----HHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEe----cCCCCchh
Q 029271 52 APIVGIIMESDLDLPVM-----NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG----DGVEAHLS 122 (196)
Q Consensus 52 ~~~V~IimGS~SD~~~~-----~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~Iav----AG~sa~L~ 122 (196)
+-+|+|+||+.|+.... ..+.+.|++.|+.+++-- .. +...+.+ +...+++++.. -|....++
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~--~~---~~~~~~~---~~~~~D~v~~~~~g~~~~~~~~~ 75 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPID--PG---EDIAAQL---KELGFDRVFNALHGRGGEDGTIQ 75 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEe--cC---cchHHHh---ccCCCCEEEEecCCCCCCccHHH
Confidence 34899999999986655 899999999999765422 11 2233332 23356655443 34566677
Q ss_pred HhhhhccCCcEEEecC
Q 029271 123 GVAAANSQILVIRVPL 138 (196)
Q Consensus 123 gvvA~~t~~PVIgvP~ 138 (196)
+++... .+|++|.++
T Consensus 76 ~~le~~-gi~~~g~~~ 90 (304)
T PRK01372 76 GLLELL-GIPYTGSGV 90 (304)
T ss_pred HHHHHc-CCCccCCCH
Confidence 776544 777777653
No 76
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=91.57 E-value=6.8 Score=32.46 Aligned_cols=83 Identities=13% Similarity=0.133 Sum_probs=55.5
Q ss_pred EEEEEcCCCC---HHHHHHHHHHHHHhC---CCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--
Q 029271 55 VGIIMESDLD---LPVMNDAARTLSDFG---VPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA-- 126 (196)
Q Consensus 55 V~IimGS~SD---~~~~~~~~~~l~~~g---i~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA-- 126 (196)
|+++..+.++ ....+.+.+.++++| ..+++.+......++...++++.+...+++.||....-...+...+.
T Consensus 2 Ig~i~~~~~~~f~~~~~~gi~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vDgiii~~~~~~~~~~~i~~~ 81 (274)
T cd06311 2 IGVSIPAADHGWTAGIVWHAQAAAKKLEAAYPDVEFILVTASNDTEQQNAQQDLLINRKIDALVILPFESAPLTQPVAKA 81 (274)
T ss_pred eeeeccCCCCcHHHHHHHHHHHHHHHhhhhCCCeEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHH
Confidence 5666655555 344566777777764 56788888877777777788888888888877776544444544433
Q ss_pred hccCCcEEEec
Q 029271 127 ANSQILVIRVP 137 (196)
Q Consensus 127 ~~t~~PVIgvP 137 (196)
.....|||.+-
T Consensus 82 ~~~gIpvV~~d 92 (274)
T cd06311 82 KKAGIFVVVVD 92 (274)
T ss_pred HHCCCeEEEEc
Confidence 24568988763
No 77
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=91.48 E-value=1.1 Score=33.49 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=27.2
Q ss_pred CeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEE
Q 029271 53 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIK 85 (196)
Q Consensus 53 ~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~ 85 (196)
++|.|.|-|++|. |+|.++++.|+++|++|+..
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~ 47 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYV 47 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEE
Confidence 5799999877554 77789999999999998743
No 78
>PRK13055 putative lipid kinase; Reviewed
Probab=91.19 E-value=1.4 Score=39.48 Aligned_cols=77 Identities=17% Similarity=0.144 Sum_probs=53.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhcc---CCcEEEe
Q 029271 60 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS---QILVIRV 136 (196)
Q Consensus 60 GS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t---~~PVIgv 136 (196)
|+.+.....+++...|++.|+.+++..+.-+ +....++++++..++++++| ++|+.+.|--|+.++- ..|.+|+
T Consensus 14 G~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~--~~~a~~~~~~~~~~~~d~vv-v~GGDGTl~evvngl~~~~~~~~Lgi 90 (334)
T PRK13055 14 GQEIMKKNVADILDILEQAGYETSAFQTTPE--PNSAKNEAKRAAEAGFDLII-AAGGDGTINEVVNGIAPLEKRPKMAI 90 (334)
T ss_pred CchhHHHHHHHHHHHHHHcCCeEEEEEeecC--CccHHHHHHHHhhcCCCEEE-EECCCCHHHHHHHHHhhcCCCCcEEE
Confidence 5555566778889999999998877665433 34556666666666777666 5688999988888864 2355665
Q ss_pred cCC
Q 029271 137 PLL 139 (196)
Q Consensus 137 P~~ 139 (196)
=|.
T Consensus 91 iP~ 93 (334)
T PRK13055 91 IPA 93 (334)
T ss_pred ECC
Confidence 443
No 79
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=90.78 E-value=7.9 Score=31.57 Aligned_cols=79 Identities=13% Similarity=0.097 Sum_probs=49.1
Q ss_pred EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCC-chhHhhhhccC
Q 029271 55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAANSQ 130 (196)
Q Consensus 55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa-~L~gvvA~~t~ 130 (196)
|+++..+..| ....+.+.+.+++.|. ++.+...+..++...++++.+...+++.+|..+.... ..-..+ ....
T Consensus 2 i~vi~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l-~~~~ 78 (268)
T cd06298 2 VGVIIPDITNSYFAELARGIDDIATMYKY--NIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGGKISEEHREEF-KRSP 78 (268)
T ss_pred EEEEECCCcchHHHHHHHHHHHHHHHcCC--eEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCCCCcHHHHHHH-hcCC
Confidence 5677755444 3444567777888876 5555567888888888888887778876665443221 111122 2346
Q ss_pred CcEEEe
Q 029271 131 ILVIRV 136 (196)
Q Consensus 131 ~PVIgv 136 (196)
.|||-+
T Consensus 79 ipvV~~ 84 (268)
T cd06298 79 TPVVLA 84 (268)
T ss_pred CCEEEE
Confidence 788766
No 80
>PRK11914 diacylglycerol kinase; Reviewed
Probab=90.71 E-value=1.4 Score=38.61 Aligned_cols=80 Identities=14% Similarity=0.098 Sum_probs=56.7
Q ss_pred eEEEEE----cCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhc-
Q 029271 54 IVGIIM----ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN- 128 (196)
Q Consensus 54 ~V~Iim----GS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~- 128 (196)
++.+|. |+-......+++.+.|++.|+.+++..+.- +....++++++..++++++| ++|+.+.+--|+.++
T Consensus 10 ~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~---~~~~~~~a~~~~~~~~d~vv-v~GGDGTi~evv~~l~ 85 (306)
T PRK11914 10 KVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTD---AHDARHLVAAALAKGTDALV-VVGGDGVISNALQVLA 85 (306)
T ss_pred eEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCC---HHHHHHHHHHHHhcCCCEEE-EECCchHHHHHhHHhc
Confidence 555654 445556778889999999998877754432 67888888888777777655 778888888888775
Q ss_pred -cCCcEEEecC
Q 029271 129 -SQILVIRVPL 138 (196)
Q Consensus 129 -t~~PVIgvP~ 138 (196)
+..| +++=|
T Consensus 86 ~~~~~-lgiiP 95 (306)
T PRK11914 86 GTDIP-LGIIP 95 (306)
T ss_pred cCCCc-EEEEe
Confidence 3444 44433
No 81
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=90.60 E-value=8.5 Score=31.59 Aligned_cols=81 Identities=10% Similarity=0.099 Sum_probs=54.7
Q ss_pred eEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--c
Q 029271 54 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--N 128 (196)
Q Consensus 54 ~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~--~ 128 (196)
+|+++..+.+| ....+.+.+.++++|+.+.+ ...=..++...++++.+-..+++.||..++........+.- .
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~--~~~~~~~~~~~~~l~~~~~~~vdgii~~~~~~~~~~~~i~~~~~ 78 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEALGGDLRV--YDAGGDDAKQADQIDQAIAQKVDAIIIQHGRAEVLKPWVKRALD 78 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHHcCCEEEE--ECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhhHHHHHHHHH
Confidence 47888877666 33456777888899986655 33334677777788877777898888877665555554432 3
Q ss_pred cCCcEEEe
Q 029271 129 SQILVIRV 136 (196)
Q Consensus 129 t~~PVIgv 136 (196)
-..|||.+
T Consensus 79 ~~ipvV~~ 86 (273)
T cd06305 79 AGIPVVAF 86 (273)
T ss_pred cCCCEEEe
Confidence 45788876
No 82
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=90.51 E-value=2.4 Score=33.28 Aligned_cols=85 Identities=15% Similarity=0.177 Sum_probs=55.1
Q ss_pred eEEEEEcCC-CC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCch-hHhhhhc
Q 029271 54 IVGIIMESD-LD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL-SGVAAAN 128 (196)
Q Consensus 54 ~V~IimGS~-SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L-~gvvA~~ 128 (196)
+|+++..+. ++ ....+.+...++++|..+++.+......++...+.++++..++++.+|......... ..-.+..
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~~~~~~~ 80 (269)
T cd01391 1 KIGVLLPLSGSAPFGAQLLAGIELAAEEIGRGLEVILADSQSDPERALEALRDLIQQGVDGIIGPPSSSSALAVVELAAA 80 (269)
T ss_pred CceEEeecCCCcHHHHHHHHHHHHHHHHhCCceEEEEecCCCCHHHHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHH
Confidence 356666443 12 233445556677866777888888888888888888888888888777765543332 1122345
Q ss_pred cCCcEEEecC
Q 029271 129 SQILVIRVPL 138 (196)
Q Consensus 129 t~~PVIgvP~ 138 (196)
...|+|.+-.
T Consensus 81 ~~ip~v~~~~ 90 (269)
T cd01391 81 AGIPVVSLDA 90 (269)
T ss_pred cCCcEEEecC
Confidence 6789987643
No 83
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=90.47 E-value=2 Score=40.14 Aligned_cols=140 Identities=19% Similarity=0.228 Sum_probs=96.4
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEc---ccCCchHHHHHHHHHhhCCC---eEEEEecCC-CCchhHhhh
Q 029271 54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGI---KIIIVGDGV-EAHLSGVAA 126 (196)
Q Consensus 54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~S---aHR~p~~~~~~~~~~e~~~~---~V~IavAG~-sa~L~gvvA 126 (196)
+++|++-.+=.--+.++....|+..|+..+..+.. .+|+.+.+.++.+.+-..++ +.+|++.|+ -+-|+|++|
T Consensus 35 k~~ivtd~~v~~~y~~~~~~~l~~~g~~v~~~~lp~GE~~Ksl~~~~~i~~~ll~~~~~R~s~iialGGGvigDlaGF~A 114 (360)
T COG0337 35 KVAIVTDETVAPLYLEKLLATLEAAGVEVDSIVLPDGEEYKSLETLEKIYDALLEAGLDRKSTLIALGGGVIGDLAGFAA 114 (360)
T ss_pred eEEEEECchhHHHHHHHHHHHHHhcCCeeeEEEeCCCcccccHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHH
Confidence 79999977777779999999999999988766665 68888888888888877766 588888877 678999999
Q ss_pred h--ccCCcEEEecCCC-----CCCCh---------hhhhhhhcCCCCCeeeEEecC----ChhhHHHHH-HHHHccCCHH
Q 029271 127 A--NSQILVIRVPLLS-----EDWSE---------DDVINSIRMPSHVQVASVPRN----NAKNAALYA-VKVLGIADED 185 (196)
Q Consensus 127 ~--~t~~PVIgvP~~~-----~~~~G---------~DLlS~lqmPsGvpvatV~I~----~~~nAA~~A-aqILa~~d~~ 185 (196)
| +--.+.|.+|+.- ++.+| -.+....-.|..|=+-|.-.. .-+.+++.= .+.-.+.|++
T Consensus 115 aty~RGv~fiqiPTTLLAqVDSSVGGKtgIN~~~gKNmIGaF~qP~aVi~D~~~L~TLp~re~~~G~AEvIK~g~I~D~~ 194 (360)
T COG0337 115 ATYMRGVRFIQIPTTLLAQVDSSVGGKTGINHPLGKNLIGAFYQPKAVLIDTDFLKTLPPRELRAGMAEVIKYGLIADPE 194 (360)
T ss_pred HHHHcCCCeEeccchHHHHhhcccccccccCCCCCcceeecccCCcEEEEchHHhccCCHHHHHHhHHHHHHHhhhcCHH
Confidence 9 4778999999962 22222 223333333553321111000 233444442 4555567899
Q ss_pred HHHHHHHH
Q 029271 186 LLERIRKY 193 (196)
Q Consensus 186 l~~kl~~~ 193 (196)
+++.|...
T Consensus 195 ~f~~Le~~ 202 (360)
T COG0337 195 FFDWLEEN 202 (360)
T ss_pred HHHHHHHH
Confidence 88888765
No 84
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=90.33 E-value=7.9 Score=30.85 Aligned_cols=82 Identities=15% Similarity=0.194 Sum_probs=53.3
Q ss_pred EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--cc
Q 029271 55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NS 129 (196)
Q Consensus 55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~--~t 129 (196)
|+++.-..++ ....+.+...++++|+ ++.+...+..++...+.++++...+++.+|..+.....+. .+.- ..
T Consensus 2 ig~v~~~~~~~~~~~~~~g~~~~~~~~g~--~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~-~~~~l~~~ 78 (264)
T cd01537 2 IGVLVPDLDNPFFAQVLKGIEEAAKAAGY--QVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDLTAPT-IVKLARKA 78 (264)
T ss_pred eEEEEcCCCChHHHHHHHHHHHHHHHcCC--eEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCcchh-HHHHhhhc
Confidence 5666643312 3344555666778886 5556666677788888888888888888888766555554 3333 45
Q ss_pred CCcEEEecCC
Q 029271 130 QILVIRVPLL 139 (196)
Q Consensus 130 ~~PVIgvP~~ 139 (196)
..|||.+-..
T Consensus 79 ~ip~v~~~~~ 88 (264)
T cd01537 79 GIPVVLVDRD 88 (264)
T ss_pred CCCEEEeccC
Confidence 6899987543
No 85
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=90.30 E-value=2.9 Score=35.91 Aligned_cols=83 Identities=16% Similarity=0.095 Sum_probs=57.5
Q ss_pred eEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhc--
Q 029271 54 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN-- 128 (196)
Q Consensus 54 ~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~-- 128 (196)
+|+++..+.+| ....+.+.+.++++|..+++.+...+..++.-.++++++...+++-||..+.....+..++...
T Consensus 1 ~Igviv~~~~~~~~~~~~~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~ 80 (303)
T cd01539 1 KIGVFLYKFDDTFISLVRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVDPTAAQTVINKAKQ 80 (303)
T ss_pred CeEEEeeCCCChHHHHHHHHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhHHHHHHHHHH
Confidence 46777765544 2344567777888666678888888999998889898888888986666554444455555443
Q ss_pred cCCcEEEe
Q 029271 129 SQILVIRV 136 (196)
Q Consensus 129 t~~PVIgv 136 (196)
-..|||.+
T Consensus 81 ~giPvV~~ 88 (303)
T cd01539 81 KNIPVIFF 88 (303)
T ss_pred CCCCEEEe
Confidence 36788865
No 86
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=90.18 E-value=11 Score=32.05 Aligned_cols=83 Identities=14% Similarity=0.268 Sum_probs=54.3
Q ss_pred CeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--
Q 029271 53 PIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA-- 127 (196)
Q Consensus 53 ~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~-- 127 (196)
..|+++..+.+| ....+.+.+.++++|+.+.+ ......+++..++++.+..++++.+|.....+..+...+.-
T Consensus 27 ~~I~vi~~~~~~~f~~~~~~~i~~~~~~~G~~~~~--~~~~~d~~~~~~~~~~l~~~~~dgiii~~~~~~~~~~~l~~~~ 104 (295)
T PRK10653 27 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVV--LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMAN 104 (295)
T ss_pred CeEEEEecCCCChHHHHHHHHHHHHHHHcCCeEEE--ecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHH
Confidence 479999977665 34455667788899976554 45567788888888888777888677655443333222221
Q ss_pred ccCCcEEEec
Q 029271 128 NSQILVIRVP 137 (196)
Q Consensus 128 ~t~~PVIgvP 137 (196)
....|||.+-
T Consensus 105 ~~~ipvV~~~ 114 (295)
T PRK10653 105 QANIPVITLD 114 (295)
T ss_pred HCCCCEEEEc
Confidence 2457888763
No 87
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=90.00 E-value=1.4 Score=40.61 Aligned_cols=80 Identities=18% Similarity=0.101 Sum_probs=66.1
Q ss_pred eEEEEE--cCCCCHHHHHHHHHHHHHhCC-CeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccC
Q 029271 54 IVGIIM--ESDLDLPVMNDAARTLSDFGV-PYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQ 130 (196)
Q Consensus 54 ~V~Iim--GS~SD~~~~~~~~~~l~~~gi-~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~ 130 (196)
+|+|.- --.+=-+..+-+.+.|+++|. +.++-+-++|-.+....++.+++..++.+|+|++++-++- .+++.-.+
T Consensus 32 ~VaI~~~veHpaLd~~~~G~~~aLk~~G~~n~~i~~~na~~~~~~a~~iarql~~~~~dviv~i~tp~Aq--~~~s~~~~ 109 (322)
T COG2984 32 TVAITQFVEHPALDAAREGVKEALKDAGYKNVKIDYQNAQGDLGTAAQIARQLVGDKPDVIVAIATPAAQ--ALVSATKT 109 (322)
T ss_pred eEEEEEeecchhHHHHHHHHHHHHHhcCccCeEEEeecCCCChHHHHHHHHHhhcCCCcEEEecCCHHHH--HHHHhcCC
Confidence 466554 445556677889999999999 8899999999999999999999999999999999887653 46667777
Q ss_pred CcEEE
Q 029271 131 ILVIR 135 (196)
Q Consensus 131 ~PVIg 135 (196)
+||+-
T Consensus 110 iPVV~ 114 (322)
T COG2984 110 IPVVF 114 (322)
T ss_pred CCEEE
Confidence 99984
No 88
>PRK13337 putative lipid kinase; Reviewed
Probab=89.96 E-value=1.3 Score=38.96 Aligned_cols=76 Identities=17% Similarity=0.139 Sum_probs=52.4
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccC---CcEEEe
Q 029271 60 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQ---ILVIRV 136 (196)
Q Consensus 60 GS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~---~PVIgv 136 (196)
|+.......+++...|++.|+.|++..+. .+.+..++++++..++.+++| ++|+.+.|..|+.++.. .|.||+
T Consensus 13 G~~~~~~~~~~~~~~l~~~~~~~~~~~t~---~~~~a~~~a~~~~~~~~d~vv-v~GGDGTl~~vv~gl~~~~~~~~lgi 88 (304)
T PRK13337 13 GRELFKKNLPDVLQKLEQAGYETSAHATT---GPGDATLAAERAVERKFDLVI-AAGGDGTLNEVVNGIAEKENRPKLGI 88 (304)
T ss_pred cchhHHHHHHHHHHHHHHcCCEEEEEEec---CCCCHHHHHHHHHhcCCCEEE-EEcCCCHHHHHHHHHhhCCCCCcEEE
Confidence 33333455677888899999988887665 346677777777777777644 67889999999987542 244555
Q ss_pred cCC
Q 029271 137 PLL 139 (196)
Q Consensus 137 P~~ 139 (196)
=|.
T Consensus 89 iP~ 91 (304)
T PRK13337 89 IPV 91 (304)
T ss_pred ECC
Confidence 443
No 89
>PRK13054 lipid kinase; Reviewed
Probab=89.77 E-value=2.4 Score=37.30 Aligned_cols=72 Identities=18% Similarity=0.241 Sum_probs=50.0
Q ss_pred eEEEEEcCCC-CHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhcc
Q 029271 54 IVGIIMESDL-DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS 129 (196)
Q Consensus 54 ~V~IimGS~S-D~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t 129 (196)
++.+|.-+.+ -.....++...|++-|+.|++..+ +.+....++++++..++.+++| ++|+.+.|-.|+.+..
T Consensus 5 ~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t---~~~~~a~~~a~~~~~~~~d~vv-v~GGDGTl~evv~~l~ 77 (300)
T PRK13054 5 KSLLILNGKSAGNEELREAVGLLREEGHTLHVRVT---WEKGDAARYVEEALALGVATVI-AGGGDGTINEVATALA 77 (300)
T ss_pred eEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEe---cCCCcHHHHHHHHHHcCCCEEE-EECCccHHHHHHHHHH
Confidence 4455553333 345667777889999998777544 3355567777777677777655 7788999999998854
No 90
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=89.23 E-value=11 Score=30.84 Aligned_cols=78 Identities=14% Similarity=0.128 Sum_probs=50.5
Q ss_pred EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--hcc
Q 029271 55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANS 129 (196)
Q Consensus 55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA--~~t 129 (196)
|+|+.-+.+| ....+.+.+.++++|+.+ -+.+....+++..++++...+.+++.+|..+... ...++. -..
T Consensus 2 i~vv~p~~~~~~~~~~~~~i~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~--~~~~~~~l~~~ 77 (268)
T cd06273 2 IGAIVPTLDNAIFARVIQAFQETLAAHGYTL--LVASSGYDLDREYAQARKLLERGVDGLALIGLDH--SPALLDLLARR 77 (268)
T ss_pred eEEEeCCCCCchHHHHHHHHHHHHHHCCCEE--EEecCCCCHHHHHHHHHHHHhcCCCEEEEeCCCC--CHHHHHHHHhC
Confidence 6777765544 445567888889999654 4466677788888888888887887666543322 223222 235
Q ss_pred CCcEEEe
Q 029271 130 QILVIRV 136 (196)
Q Consensus 130 ~~PVIgv 136 (196)
..||+.+
T Consensus 78 ~iPvv~~ 84 (268)
T cd06273 78 GVPYVAT 84 (268)
T ss_pred CCCEEEE
Confidence 6888875
No 91
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=89.22 E-value=3 Score=36.51 Aligned_cols=69 Identities=23% Similarity=0.319 Sum_probs=48.9
Q ss_pred EEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhcc
Q 029271 57 IIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS 129 (196)
Q Consensus 57 IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t 129 (196)
|+=|..+.....+++.+.|++.|+.|++..+ +.+....++++++...+.+++| ++|+.+.+--|+.+..
T Consensus 5 I~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t---~~~~~a~~~a~~~~~~~~d~vv-~~GGDGTi~ev~ngl~ 73 (293)
T TIGR03702 5 ILNGKQADNEDVREAVGDLRDEGIQLHVRVT---WEKGDAQRYVAEALALGVSTVI-AGGGDGTLREVATALA 73 (293)
T ss_pred EEeCCccchhHHHHHHHHHHHCCCeEEEEEe---cCCCCHHHHHHHHHHcCCCEEE-EEcCChHHHHHHHHHH
Confidence 3334444555677888889999998887743 3355566777777666677655 7788999888888874
No 92
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=89.18 E-value=14 Score=32.04 Aligned_cols=63 Identities=11% Similarity=0.038 Sum_probs=43.8
Q ss_pred CCeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecC
Q 029271 52 APIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 116 (196)
Q Consensus 52 ~~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG 116 (196)
+..|+++..+.+| ....+.+.+.+++.|. .+-+...+..+++..++++.+...+++-+|....
T Consensus 59 ~~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 124 (343)
T PRK10727 59 TETVGLVVGDVSDPFFGAMVKAVEQVAYHTGN--FLLIGNGYHNEQKERQAIEQLIRHRCAALVVHAK 124 (343)
T ss_pred CCeEEEEeCCCCcchHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 4579999876554 2345567777888885 4566666777777778888888888876665543
No 93
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=89.07 E-value=11 Score=30.66 Aligned_cols=80 Identities=15% Similarity=0.289 Sum_probs=49.1
Q ss_pred EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--cc
Q 029271 55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NS 129 (196)
Q Consensus 55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~--~t 129 (196)
|+++..+.+| .+..+.+.+.++++|+. +.+......+++..+.++++...+++.+|...-.+......+.- .-
T Consensus 2 I~vv~~~~~~~~~~~~~~~i~~~~~~~g~~--v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~~~~~~~~~~l~~l~~~ 79 (268)
T cd06323 2 IGLSVSTLNNPFFVTLKDGAQKEAKELGYE--LTVLDAQNDAAKQLNDIEDLITRGVDAIIINPTDSDAVVPAVKAANEA 79 (268)
T ss_pred eeEecccccCHHHHHHHHHHHHHHHHcCce--EEecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHC
Confidence 5667766555 44556777888888855 44555556778788888888777787655543322222223322 23
Q ss_pred CCcEEEe
Q 029271 130 QILVIRV 136 (196)
Q Consensus 130 ~~PVIgv 136 (196)
..|||.+
T Consensus 80 ~ipvv~~ 86 (268)
T cd06323 80 GIPVFTI 86 (268)
T ss_pred CCcEEEE
Confidence 5678766
No 94
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=89.01 E-value=12 Score=30.92 Aligned_cols=80 Identities=14% Similarity=0.144 Sum_probs=51.7
Q ss_pred EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchh---Hhhh--
Q 029271 55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS---GVAA-- 126 (196)
Q Consensus 55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~---gvvA-- 126 (196)
|+|+..+.+| ....+.+.+.++++|+.+. +...-..++.-.+.++++...+++-+|...+.+.... ..+.
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~ 79 (273)
T cd01541 2 IGVITTYISDYIFPSIIRGIESVLSEKGYSLL--LASTNNDPERERKCLENMLSQGIDGLIIEPTKSALPNPNIDLYLKL 79 (273)
T ss_pred eEEEeCCccchhHHHHHHHHHHHHHHcCCEEE--EEeCCCCHHHHHHHHHHHHHcCCCEEEEeccccccccccHHHHHHH
Confidence 6777765444 3566678888889987554 4445667777778888888888987776554432221 2222
Q ss_pred hccCCcEEEe
Q 029271 127 ANSQILVIRV 136 (196)
Q Consensus 127 ~~t~~PVIgv 136 (196)
-....|||.+
T Consensus 80 ~~~~ipvV~~ 89 (273)
T cd01541 80 EKLGIPYVFI 89 (273)
T ss_pred HHCCCCEEEE
Confidence 2345788876
No 95
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=88.83 E-value=2.4 Score=36.76 Aligned_cols=83 Identities=18% Similarity=0.274 Sum_probs=54.0
Q ss_pred eEEEEE----cCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhcc
Q 029271 54 IVGIIM----ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS 129 (196)
Q Consensus 54 ~V~Iim----GS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t 129 (196)
++.||. |+.......+++.+.|++.|+.+++..+. ++ ....+++++....+++++| ++|+.+.+--++.+.-
T Consensus 3 ~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~-~~--~~~~~~~~~~~~~~~d~iv-v~GGDGTl~~v~~~l~ 78 (293)
T TIGR00147 3 EAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTW-EK--GDAARYVEEARKFGVDTVI-AGGGDGTINEVVNALI 78 (293)
T ss_pred eEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEec-Cc--ccHHHHHHHHHhcCCCEEE-EECCCChHHHHHHHHh
Confidence 455654 44445677888999999999988875542 32 1223444444455667655 5788999998887753
Q ss_pred ---CCcEEE-ecCCC
Q 029271 130 ---QILVIR-VPLLS 140 (196)
Q Consensus 130 ---~~PVIg-vP~~~ 140 (196)
..|.|| +|.-+
T Consensus 79 ~~~~~~~lgiiP~Gt 93 (293)
T TIGR00147 79 QLDDIPALGILPLGT 93 (293)
T ss_pred cCCCCCcEEEEcCcC
Confidence 357788 67644
No 96
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=88.31 E-value=5.9 Score=32.78 Aligned_cols=81 Identities=15% Similarity=0.163 Sum_probs=51.9
Q ss_pred eEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--c
Q 029271 54 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--N 128 (196)
Q Consensus 54 ~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~--~ 128 (196)
+|++++...++ ....+.+.+.++++|. ++.+......++.-.++++.+...+++.||..+.-...+...+.- .
T Consensus 1 ~igv~~~~~~~~~~~~~~~~i~~~~~~~g~--~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~~~~~~~~~i~~~~~ 78 (282)
T cd06318 1 KIGFSQYTLNSPFFAALTEAAKAHAKALGY--ELISTDAQGDLTKQIADVEDLLTRGVNVLIINPVDPEGLVPAVAAAKA 78 (282)
T ss_pred CeeEEeccccCHHHHHHHHHHHHHHHHcCC--EEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCCccchHHHHHHHHH
Confidence 47777776665 2334466677788886 555666667788778888888888897666654444444333332 2
Q ss_pred cCCcEEEe
Q 029271 129 SQILVIRV 136 (196)
Q Consensus 129 t~~PVIgv 136 (196)
-..|||-+
T Consensus 79 ~~iPvV~~ 86 (282)
T cd06318 79 AGVPVVVV 86 (282)
T ss_pred CCCCEEEe
Confidence 45677754
No 97
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=87.79 E-value=2.5 Score=32.78 Aligned_cols=53 Identities=17% Similarity=0.303 Sum_probs=41.6
Q ss_pred eEEEEEcCCCC-HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC
Q 029271 54 IVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 106 (196)
Q Consensus 54 ~V~IimGS~SD-~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~ 106 (196)
.+.|..|...+ .-+.+-..+.|+++||.|++...+..-+.+++.+.++++..+
T Consensus 32 Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D 85 (117)
T PF00763_consen 32 LAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNED 85 (117)
T ss_dssp EEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-
T ss_pred EEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCC
Confidence 67777786554 557788889999999999999999999999999999988765
No 98
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=87.63 E-value=5.9 Score=32.67 Aligned_cols=82 Identities=9% Similarity=0.153 Sum_probs=55.2
Q ss_pred EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--cc
Q 029271 55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NS 129 (196)
Q Consensus 55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~--~t 129 (196)
|+++....+| ....+.+.+.++++|..|++.+......+++..++++.+.+.+++-+|............+.- ..
T Consensus 2 Ig~v~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~~~~~~~~~~~i~~~~~~ 81 (271)
T cd06321 2 IGVSVGDLGNPFFVALAKGAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNAVDSKGIAPAVKRAQAA 81 (271)
T ss_pred eEEEecccCCHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEeCCChhHhHHHHHHHHHC
Confidence 6677765555 234456667778888888888877778888888888888888887666555433333344332 34
Q ss_pred CCcEEEe
Q 029271 130 QILVIRV 136 (196)
Q Consensus 130 ~~PVIgv 136 (196)
..|||.+
T Consensus 82 ~ipvv~~ 88 (271)
T cd06321 82 GIVVVAV 88 (271)
T ss_pred CCeEEEe
Confidence 5789887
No 99
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=87.61 E-value=2.2 Score=31.98 Aligned_cols=74 Identities=11% Similarity=-0.011 Sum_probs=48.6
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCcE
Q 029271 54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILV 133 (196)
Q Consensus 54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PV 133 (196)
.|.|.+- +.=|+|.++++.|+++|++|+..-..-+ ++ ..++.+.+.. .+|..+.|+
T Consensus 9 ~Vvvysk--~~Cp~C~~ak~~L~~~~i~~~~vdid~~--~~-~~~~~~~l~~-------------------~tg~~tvP~ 64 (99)
T TIGR02189 9 AVVIFSR--SSCCMCHVVKRLLLTLGVNPAVHEIDKE--PA-GKDIENALSR-------------------LGCSPAVPA 64 (99)
T ss_pred CEEEEEC--CCCHHHHHHHHHHHHcCCCCEEEEcCCC--cc-HHHHHHHHHH-------------------hcCCCCcCe
Confidence 4555544 6789999999999999999886555433 22 1223232221 236678898
Q ss_pred EEecCCCCCCChhh-hhhhhc
Q 029271 134 IRVPLLSEDWSEDD-VINSIR 153 (196)
Q Consensus 134 IgvP~~~~~~~G~D-LlS~lq 153 (196)
|-+ .+..++|.| |..+.+
T Consensus 65 Vfi--~g~~iGG~ddl~~l~~ 83 (99)
T TIGR02189 65 VFV--GGKLVGGLENVMALHI 83 (99)
T ss_pred EEE--CCEEEcCHHHHHHHHH
Confidence 843 345678888 888776
No 100
>PRK10481 hypothetical protein; Provisional
Probab=87.57 E-value=5.4 Score=34.79 Aligned_cols=80 Identities=14% Similarity=0.178 Sum_probs=59.4
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEccc-CCchHHHHHHHHHhhCCCe-EEEEecCCCCchhHhhhhccC
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPH-QNCKEALSYALSAKERGIK-IIIVGDGVEAHLSGVAAANSQ 130 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaH-R~p~~~~~~~~~~e~~~~~-V~IavAG~sa~L~gvvA~~t~ 130 (196)
.+++|++=... -.++..+-..++|++..+...|.+ -+++.+.+..++....|++ ||+.++|++......+.-.+.
T Consensus 130 ~riGVitP~~~---qi~~~~~kw~~~G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~~~~~~le~~lg 206 (224)
T PRK10481 130 HQVGVIVPVEE---QLAQQAQKWQVLQKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDCLGYHQRHRDLLQKALD 206 (224)
T ss_pred CeEEEEEeCHH---HHHHHHHHHHhcCCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCCCcCHHHHHHHHHHHC
Confidence 58999986533 333444444555888778777764 4444777788888778884 889999999888999999999
Q ss_pred CcEEE
Q 029271 131 ILVIR 135 (196)
Q Consensus 131 ~PVIg 135 (196)
+|||-
T Consensus 207 ~PVI~ 211 (224)
T PRK10481 207 VPVLL 211 (224)
T ss_pred cCEEc
Confidence 99983
No 101
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=87.43 E-value=18 Score=31.25 Aligned_cols=111 Identities=12% Similarity=0.203 Sum_probs=69.0
Q ss_pred CeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCe-EEEEecCCC-CchhHhhhh
Q 029271 53 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIK-IIIVGDGVE-AHLSGVAAA 127 (196)
Q Consensus 53 ~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~-V~IavAG~s-a~L~gvvA~ 127 (196)
+.|++|.-..++- +.++.+.+.+++.|. .+-++.....++.- ++++.+.++.++ +|++....+ .+|--....
T Consensus 2 ~~IGvivp~~~npff~~ii~gIe~~a~~~Gy--~l~l~~t~~~~~~e-~~i~~l~~~~vDGiI~~s~~~~~~~l~~~~~~ 78 (279)
T PF00532_consen 2 KTIGVIVPDISNPFFAEIIRGIEQEAREHGY--QLLLCNTGDDEEKE-EYIELLLQRRVDGIILASSENDDEELRRLIKS 78 (279)
T ss_dssp CEEEEEESSSTSHHHHHHHHHHHHHHHHTTC--EEEEEEETTTHHHH-HHHHHHHHTTSSEEEEESSSCTCHHHHHHHHT
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHHcCC--EEEEecCCCchHHH-HHHHHHHhcCCCEEEEecccCChHHHHHHHHc
Confidence 5789999998886 445566777778876 66777888888877 999999888885 555532222 234444433
Q ss_pred ccCCcEEEecCCCCCCChhhhhhhhcCCCCCeeeEEecCChhhHHHHHHHHHccC
Q 029271 128 NSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIA 182 (196)
Q Consensus 128 ~t~~PVIgvP~~~~~~~G~DLlS~lqmPsGvpvatV~I~~~~nAA~~AaqILa~~ 182 (196)
..||+-+=-.... |.++|+..+ ||-.++-.++-.++...
T Consensus 79 --~iPvV~~~~~~~~------------~~~~~~V~~--D~~~a~~~a~~~Li~~G 117 (279)
T PF00532_consen 79 --GIPVVLIDRYIDN------------PEGVPSVYI--DNYEAGYEATEYLIKKG 117 (279)
T ss_dssp --TSEEEEESS-SCT------------TCTSCEEEE--EHHHHHHHHHHHHHHTT
T ss_pred --CCCEEEEEeccCC------------cccCCEEEE--cchHHHHHHHHHHHhcc
Confidence 6888876544321 235554443 65554444444444443
No 102
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=87.41 E-value=6.2 Score=32.57 Aligned_cols=84 Identities=12% Similarity=0.212 Sum_probs=57.2
Q ss_pred eEEEEEcCCCCH---HHHHHHHHHHHHh---CCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh-
Q 029271 54 IVGIIMESDLDL---PVMNDAARTLSDF---GVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA- 126 (196)
Q Consensus 54 ~V~IimGS~SD~---~~~~~~~~~l~~~---gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA- 126 (196)
+|+++....+|. ...+.+.+.++++ |..+++.+....-.++...+.++.+..++++.||........+...+.
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~l~~ 80 (272)
T cd06300 1 KIGLSNSYAGNTWRAQMLDEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPASPTALNPVIEE 80 (272)
T ss_pred CeEEeccccCChHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHH
Confidence 466777555542 3455666777888 887788887666677888888888888888877777655444444332
Q ss_pred -hccCCcEEEec
Q 029271 127 -ANSQILVIRVP 137 (196)
Q Consensus 127 -~~t~~PVIgvP 137 (196)
..-..|||.+-
T Consensus 81 ~~~~~iPvv~~~ 92 (272)
T cd06300 81 ACEAGIPVVSFD 92 (272)
T ss_pred HHHCCCeEEEEe
Confidence 23567999864
No 103
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=87.28 E-value=14 Score=29.95 Aligned_cols=78 Identities=12% Similarity=0.079 Sum_probs=49.9
Q ss_pred EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--hcc
Q 029271 55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANS 129 (196)
Q Consensus 55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA--~~t 129 (196)
|+++.-+.++ ....+.+.+.++++|+ ++.+......+++..++++.+...+++-+|....... ...+. -..
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~--~~~~~~~~~~ 77 (268)
T cd01575 2 VAVLVPSLSNSVFADVLQGISDVLEAAGY--QLLLGNTGYSPEREEELLRTLLSRRPAGLILTGLEHT--ERTRQLLRAA 77 (268)
T ss_pred EEEEeCCCcchhHHHHHHHHHHHHHHcCC--EEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCCCCC--HHHHHHHHhc
Confidence 4555544333 3445677788889985 5555666777888888888888888876666554332 22332 234
Q ss_pred CCcEEEe
Q 029271 130 QILVIRV 136 (196)
Q Consensus 130 ~~PVIgv 136 (196)
..|||.+
T Consensus 78 ~ipvv~~ 84 (268)
T cd01575 78 GIPVVEI 84 (268)
T ss_pred CCCEEEE
Confidence 6799877
No 104
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=87.21 E-value=15 Score=30.15 Aligned_cols=83 Identities=13% Similarity=0.159 Sum_probs=49.6
Q ss_pred eEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--c
Q 029271 54 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--N 128 (196)
Q Consensus 54 ~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~--~ 128 (196)
||+|+....+| ....+.+.+.+++.|....+.-......+++..++++++...+++-+|............+.- .
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~~~~~~~~~l~~~~~ 80 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPTDAKALVPPLKEAKD 80 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCCChhhhHHHHHHHHH
Confidence 57888765444 233455667777888644333221256888888888887777787555544333323334333 3
Q ss_pred cCCcEEEe
Q 029271 129 SQILVIRV 136 (196)
Q Consensus 129 t~~PVIgv 136 (196)
...|||.+
T Consensus 81 ~~ipvV~~ 88 (273)
T cd06310 81 AGIPVVLI 88 (273)
T ss_pred CCCCEEEe
Confidence 45788876
No 105
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=86.98 E-value=5.6 Score=27.31 Aligned_cols=32 Identities=19% Similarity=0.106 Sum_probs=24.1
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEE
Q 029271 54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKIL 87 (196)
Q Consensus 54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~ 87 (196)
+|.+.+-+ .=+.|+++++.|++.||+|+..=.
T Consensus 2 ~v~ly~~~--~C~~C~ka~~~L~~~gi~~~~~di 33 (73)
T cd03027 2 RVTIYSRL--GCEDCTAVRLFLREKGLPYVEINI 33 (73)
T ss_pred EEEEEecC--CChhHHHHHHHHHHCCCceEEEEC
Confidence 34444443 348999999999999999986644
No 106
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=86.85 E-value=16 Score=29.94 Aligned_cols=78 Identities=10% Similarity=0.110 Sum_probs=51.0
Q ss_pred EEEEEcCCC---CHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--hcc
Q 029271 55 VGIIMESDL---DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANS 129 (196)
Q Consensus 55 V~IimGS~S---D~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA--~~t 129 (196)
|+|+.-+.+ .....+.+.+.++++|+ ++-+......++...++++....++++.+|........ ..+. ..-
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~~~--~~~~~~~~~ 77 (270)
T cd06296 2 IGLVFPDLDSPWASEVLRGVEEAAAAAGY--DVVLSESGRRTSPERQWVERLSARRTDGVILVTPELTS--AQRAALRRT 77 (270)
T ss_pred eEEEECCCCCccHHHHHHHHHHHHHHcCC--eEEEecCCCchHHHHHHHHHHHHcCCCEEEEecCCCCh--HHHHHHhcC
Confidence 566664433 45666778888888885 66667777778777788888888888866665543221 2222 234
Q ss_pred CCcEEEe
Q 029271 130 QILVIRV 136 (196)
Q Consensus 130 ~~PVIgv 136 (196)
..|||.+
T Consensus 78 ~ipvV~i 84 (270)
T cd06296 78 GIPFVVV 84 (270)
T ss_pred CCCEEEE
Confidence 5688775
No 107
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=86.23 E-value=6.4 Score=32.52 Aligned_cols=84 Identities=17% Similarity=0.242 Sum_probs=52.4
Q ss_pred eEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--c
Q 029271 54 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--N 128 (196)
Q Consensus 54 ~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~--~ 128 (196)
+|+++.-+.+| ....+.+.+.+++.|+...+..+.....++.-.+.++.+...+++.+|.....+..+...+.. .
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~ 80 (275)
T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDVNLVPAVERAKK 80 (275)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCChHHhHHHHHHHHH
Confidence 36777766555 233456777788888765544444456777777788888788888766654433333333332 3
Q ss_pred cCCcEEEec
Q 029271 129 SQILVIRVP 137 (196)
Q Consensus 129 t~~PVIgvP 137 (196)
-..|||.+-
T Consensus 81 ~~iPvV~~~ 89 (275)
T cd06320 81 KGIPVVNVN 89 (275)
T ss_pred CCCeEEEEC
Confidence 467998764
No 108
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=86.22 E-value=20 Score=30.51 Aligned_cols=82 Identities=17% Similarity=0.139 Sum_probs=48.3
Q ss_pred eEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh-cc
Q 029271 54 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA-NS 129 (196)
Q Consensus 54 ~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~-~t 129 (196)
+++++.-+.+| ....+.+.+.++++|..+.+.-......+++..++++.+.+++++-||..+.....+...+.. ..
T Consensus 1 ~igvvvp~~~n~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~~~ 80 (295)
T TIGR02955 1 KLCALYPHLKDSYWLSINYGMVEQAKHLGVELKVLEAGGYPNLDKQLAQIEQCKSWGADAILLGTVSPEALNHDLAQLTK 80 (295)
T ss_pred CeeEEecCCCcHHHHHHHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhhhHHHHHHhc
Confidence 35666665555 333446667778888755443222234667777888888888997666555433333333322 23
Q ss_pred CCcEEE
Q 029271 130 QILVIR 135 (196)
Q Consensus 130 ~~PVIg 135 (196)
..||+-
T Consensus 81 ~iPvV~ 86 (295)
T TIGR02955 81 SIPVFA 86 (295)
T ss_pred CCCEEE
Confidence 678774
No 109
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=86.19 E-value=13 Score=30.17 Aligned_cols=78 Identities=12% Similarity=0.098 Sum_probs=50.0
Q ss_pred EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--cc
Q 029271 55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NS 129 (196)
Q Consensus 55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~--~t 129 (196)
|+|+....++ ....+.+.+.++++|.. +-+...+..+++..++++++.+.+++.+|....-. . ...+.. ..
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~~--~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~~~-~-~~~~~~~~~~ 77 (259)
T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALYENGYQ--MLLMNTNFSIEKEIEALELLARQKVDGIILLATTI-T-DEHREAIKKL 77 (259)
T ss_pred eEEEecCCccchHHHHHHHHHHHHHHCCCE--EEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCC-C-HHHHHHHhcC
Confidence 6677755443 34566677778888854 45555677888888888888888898777654321 1 122222 23
Q ss_pred CCcEEEe
Q 029271 130 QILVIRV 136 (196)
Q Consensus 130 ~~PVIgv 136 (196)
..|||.+
T Consensus 78 ~ipvv~~ 84 (259)
T cd01542 78 NVPVVVV 84 (259)
T ss_pred CCCEEEE
Confidence 5788876
No 110
>PRK00861 putative lipid kinase; Reviewed
Probab=85.58 E-value=3.5 Score=36.10 Aligned_cols=74 Identities=23% Similarity=0.178 Sum_probs=51.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccC-CcEEEecC
Q 029271 60 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQ-ILVIRVPL 138 (196)
Q Consensus 60 GS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~-~PVIgvP~ 138 (196)
|+.+.....+++...|++ +++|++..+... ....++++++...+.+++| ++|+.+.|..|+.+... -|-+|+=|
T Consensus 14 G~~~~~~~~~~i~~~l~~-~~~~~~~~t~~~---~~a~~~a~~~~~~~~d~vv-~~GGDGTl~evv~~l~~~~~~lgviP 88 (300)
T PRK00861 14 GQGNPEVDLALIRAILEP-EMDLDIYLTTPE---IGADQLAQEAIERGAELII-ASGGDGTLSAVAGALIGTDIPLGIIP 88 (300)
T ss_pred CCCchhhhHHHHHHHHHh-cCceEEEEccCC---CCHHHHHHHHHhcCCCEEE-EECChHHHHHHHHHHhcCCCcEEEEc
Confidence 444555667788888887 578888887654 4456667777667777766 57889999999988743 23355433
No 111
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=85.54 E-value=23 Score=30.50 Aligned_cols=82 Identities=10% Similarity=0.166 Sum_probs=52.9
Q ss_pred CCeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--
Q 029271 52 APIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA-- 126 (196)
Q Consensus 52 ~~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA-- 126 (196)
...|+++..+.++ ....+.+.+.+++.|. .+-+......++...++++.+...+++-||....... ....+.
T Consensus 64 ~~~Igvv~~~~~~~~~~~i~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~~l 140 (342)
T PRK10014 64 SGVIGLIVRDLSAPFYAELTAGLTEALEAQGR--MVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIAGAAGS-SDDLREMA 140 (342)
T ss_pred CCEEEEEeCCCccchHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-cHHHHHHH
Confidence 3478998876544 3344566777888885 5555566777888888888888888876666554332 223332
Q ss_pred hccCCcEEEe
Q 029271 127 ANSQILVIRV 136 (196)
Q Consensus 127 ~~t~~PVIgv 136 (196)
.....|||-+
T Consensus 141 ~~~~iPvV~~ 150 (342)
T PRK10014 141 EEKGIPVVFA 150 (342)
T ss_pred hhcCCCEEEE
Confidence 2345788876
No 112
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=85.43 E-value=13 Score=31.46 Aligned_cols=80 Identities=13% Similarity=0.260 Sum_probs=53.1
Q ss_pred EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--hcc
Q 029271 55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANS 129 (196)
Q Consensus 55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA--~~t 129 (196)
|+++..+.+| ....+.+.+.++++|+. +.+......+++..++++++...+++.||..+.-...+...+. ..-
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~a~~~g~~--~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~l~~l~~~ 79 (288)
T cd01538 2 IGLSLPTKTEERWIRDRPNFEAALKELGAE--VIVQNANGDPAKQISQIENMIAKGVDVLVIAPVDGEALASAVEKAADA 79 (288)
T ss_pred eEEEEeCCCcHHHHHHHHHHHHHHHHcCCE--EEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhHHHHHHHHHHC
Confidence 6777766555 23445677778888864 5556666778888888888888889877776544333334432 234
Q ss_pred CCcEEEe
Q 029271 130 QILVIRV 136 (196)
Q Consensus 130 ~~PVIgv 136 (196)
..|||.+
T Consensus 80 ~ipvV~~ 86 (288)
T cd01538 80 GIPVIAY 86 (288)
T ss_pred CCCEEEE
Confidence 6788876
No 113
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=85.29 E-value=6 Score=28.93 Aligned_cols=53 Identities=30% Similarity=0.367 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCch
Q 029271 66 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 121 (196)
Q Consensus 66 ~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L 121 (196)
...+++.+.++++|++++..+...+...+.+.++ .+..+++++|.+......+
T Consensus 56 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~~~---a~~~~~dlIV~G~~~~~~~ 108 (132)
T cd01988 56 KLLRQAERIAASLGVPVHTIIRIDHDIASGILRT---AKERQADLIIMGWHGSTSL 108 (132)
T ss_pred HHHHHHHHHhhhcCCceEEEEEecCCHHHHHHHH---HHhcCCCEEEEecCCCCCc
Confidence 3444556666678999887776545433455554 4456788888877766654
No 114
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=85.20 E-value=3.5 Score=29.75 Aligned_cols=41 Identities=24% Similarity=0.223 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHH
Q 029271 61 SDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALS 102 (196)
Q Consensus 61 S~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~ 102 (196)
+.++=|+|.++++.|++.|++|+......|.. ++..+++++
T Consensus 7 t~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~-~~~~~~~~~ 47 (80)
T COG0695 7 TKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEP-EEAREMVKR 47 (80)
T ss_pred ECCCCchHHHHHHHHHHcCCCcEEEEecCCcH-HHHHHHHHH
Confidence 45568999999999999999999988776665 555566553
No 115
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=85.19 E-value=3.6 Score=28.26 Aligned_cols=69 Identities=17% Similarity=0.153 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCC--eEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCcEEEecC
Q 029271 61 SDLDLPVMNDAARTLSDFGVP--YEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPL 138 (196)
Q Consensus 61 S~SD~~~~~~~~~~l~~~gi~--~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PVIgvP~ 138 (196)
+.+.=|.|+++...|++++++ |++--.......+.+.+++.+. .+..+.|+|- .
T Consensus 5 ~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~----------------------~g~~~vP~v~--i 60 (84)
T TIGR02180 5 SKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEI----------------------TGQRTVPNIF--I 60 (84)
T ss_pred ECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHH----------------------hCCCCCCeEE--E
Confidence 356779999999999999998 7665555555556655554432 2334566663 2
Q ss_pred CCCCCChhh-hhhhhc
Q 029271 139 LSEDWSEDD-VINSIR 153 (196)
Q Consensus 139 ~~~~~~G~D-LlS~lq 153 (196)
.+..++|.| +..+.+
T Consensus 61 ~g~~igg~~~~~~~~~ 76 (84)
T TIGR02180 61 NGKFIGGCSDLLALYK 76 (84)
T ss_pred CCEEEcCHHHHHHHHH
Confidence 334467777 777766
No 116
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=84.79 E-value=20 Score=29.38 Aligned_cols=80 Identities=11% Similarity=0.172 Sum_probs=51.7
Q ss_pred EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCC---CCchhHhhhh-
Q 029271 55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV---EAHLSGVAAA- 127 (196)
Q Consensus 55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~---sa~L~gvvA~- 127 (196)
|++++.+..+ ....+.+.+.++++|. ++-+......++.-.++++...+.+++-+|..... ...+...+.-
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~i~~~ 79 (273)
T cd06292 2 VGLLVPELSNPIFPAFAEAIEAALAQYGY--TVLLCNTYRGGVSEADYVEDLLARGVRGVVFISSLHADTHADHSHYERL 79 (273)
T ss_pred EEEEeCCCcCchHHHHHHHHHHHHHHCCC--EEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCCCCCcccchhHHHHHH
Confidence 5667654433 3345677788888885 55667777788888888888888888766654322 1233333433
Q ss_pred -ccCCcEEEe
Q 029271 128 -NSQILVIRV 136 (196)
Q Consensus 128 -~t~~PVIgv 136 (196)
....||+.+
T Consensus 80 ~~~~ipvV~i 89 (273)
T cd06292 80 AERGLPVVLV 89 (273)
T ss_pred HhCCCCEEEE
Confidence 356788876
No 117
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=84.78 E-value=3 Score=27.60 Aligned_cols=44 Identities=18% Similarity=0.214 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCC
Q 029271 63 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 108 (196)
Q Consensus 63 SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~ 108 (196)
..=++|+++++.|++.|++|+..=.+-+. +...++.+.......
T Consensus 7 ~~C~~C~~~~~~L~~~~i~y~~~dv~~~~--~~~~~l~~~~g~~~~ 50 (60)
T PF00462_consen 7 PGCPYCKKAKEFLDEKGIPYEEVDVDEDE--EAREELKELSGVRTV 50 (60)
T ss_dssp TTSHHHHHHHHHHHHTTBEEEEEEGGGSH--HHHHHHHHHHSSSSS
T ss_pred CCCcCHHHHHHHHHHcCCeeeEcccccch--hHHHHHHHHcCCCcc
Confidence 56689999999999999998776555543 444444443333344
No 118
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=84.15 E-value=5.6 Score=35.54 Aligned_cols=76 Identities=13% Similarity=0.165 Sum_probs=58.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhc--cCCcEEEec
Q 029271 60 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN--SQILVIRVP 137 (196)
Q Consensus 60 GS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~--t~~PVIgvP 137 (196)
|-...-.+.+++.+.|++.|..+++++.... ....++++++...+++.+|+ +|+.+.+.-|+.++ +..|.+|+=
T Consensus 14 G~~~~~~~~~~~~~~l~~~g~~~~~~~t~~~---g~a~~~a~~a~~~~~D~via-~GGDGTv~evingl~~~~~~~Lgil 89 (301)
T COG1597 14 GKGKAKKLLREVEELLEEAGHELSVRVTEEA---GDAIEIAREAAVEGYDTVIA-AGGDGTVNEVANGLAGTDDPPLGIL 89 (301)
T ss_pred cccchhhHHHHHHHHHHhcCCeEEEEEeecC---ccHHHHHHHHHhcCCCEEEE-ecCcchHHHHHHHHhcCCCCceEEe
Confidence 4344567788999999999999999988665 78888999888888887776 57788888888886 555645544
Q ss_pred CC
Q 029271 138 LL 139 (196)
Q Consensus 138 ~~ 139 (196)
|.
T Consensus 90 P~ 91 (301)
T COG1597 90 PG 91 (301)
T ss_pred cC
Confidence 43
No 119
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=83.87 E-value=27 Score=30.06 Aligned_cols=81 Identities=11% Similarity=0.185 Sum_probs=52.3
Q ss_pred CCeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh-
Q 029271 52 APIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA- 127 (196)
Q Consensus 52 ~~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~- 127 (196)
+..|+++..+.+| ....+.+.+.++++| |++.+...+..+++..++++.+...+++-||...+... ...+.-
T Consensus 59 ~~~i~vi~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~--~~~~~~l 134 (341)
T PRK10703 59 TKSIGLLATSSEAPYFAEIIEAVEKNCYQKG--YTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCSEYP--EPLLAML 134 (341)
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHHCC--CEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCC--HHHHHHH
Confidence 3478888865444 234466777778888 45667777888888888888888888876665554211 122222
Q ss_pred -c-cCCcEEEe
Q 029271 128 -N-SQILVIRV 136 (196)
Q Consensus 128 -~-t~~PVIgv 136 (196)
. ...||+-+
T Consensus 135 ~~~~~iPvV~~ 145 (341)
T PRK10703 135 EEYRHIPMVVM 145 (341)
T ss_pred HhcCCCCEEEE
Confidence 2 45688765
No 120
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=83.26 E-value=28 Score=29.74 Aligned_cols=82 Identities=12% Similarity=0.154 Sum_probs=49.7
Q ss_pred CCeEEEEEcCCCCHH---HHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCC-CCchhHhhhh
Q 029271 52 APIVGIIMESDLDLP---VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAAA 127 (196)
Q Consensus 52 ~~~V~IimGS~SD~~---~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~-sa~L~gvvA~ 127 (196)
+..|++++...++.- ..+.+.+.+++.|. ++-+...+..++...++++.+...+++-+|..... +..+--.+ .
T Consensus 59 ~~~Igvv~~~~~~~f~~~l~~~i~~~~~~~g~--~~~i~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l-~ 135 (329)
T TIGR01481 59 TTTVGVIIPDISNIYYAELARGIEDIATMYKY--NIILSNSDEDPEKEVQVLNTLLSKQVDGIIFMGGTITEKLREEF-S 135 (329)
T ss_pred CCEEEEEeCCCCchhHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHH-H
Confidence 457999997655522 23455566677774 66667777778887788887777788655544321 22221222 2
Q ss_pred ccCCcEEEe
Q 029271 128 NSQILVIRV 136 (196)
Q Consensus 128 ~t~~PVIgv 136 (196)
...+||+-+
T Consensus 136 ~~~iPvV~~ 144 (329)
T TIGR01481 136 RSPVPVVLA 144 (329)
T ss_pred hcCCCEEEE
Confidence 346788765
No 121
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=82.18 E-value=26 Score=28.62 Aligned_cols=108 Identities=19% Similarity=0.173 Sum_probs=61.5
Q ss_pred EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh-ccC
Q 029271 55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA-NSQ 130 (196)
Q Consensus 55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~-~t~ 130 (196)
|+++.-+.+| ....+.+.+.++++|. .+-+...+-.+++..++++.+.+.+++-+|........ ..+.. ...
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~gy--~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~~~--~~~~~~~~~ 77 (265)
T cd06290 2 IGVLTQDFASPFYGRILKGMERGLNGSGY--SPIIATGHWNQSRELEALELLKSRRVDALILLGGDLPE--EEILALAEE 77 (265)
T ss_pred EEEEECCCCCchHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCh--HHHHHHhcC
Confidence 5666654443 2345567778888985 45555567788888889999988889766655443211 11111 235
Q ss_pred CcEEEecCCCCCCChhhhhhhhcCCCCCeeeEEecCChhhHHHHHHHHHcc
Q 029271 131 ILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGI 181 (196)
Q Consensus 131 ~PVIgvP~~~~~~~G~DLlS~lqmPsGvpvatV~I~~~~nAA~~AaqILa~ 181 (196)
.|||-+=.... .++ +.-|++|+...+...+-.++..
T Consensus 78 iPvV~i~~~~~-------------~~~--~~~V~~d~~~a~~~~~~~l~~~ 113 (265)
T cd06290 78 IPVLAVGRRVP-------------GPG--AASIAVDNFQGGYLATQHLIDL 113 (265)
T ss_pred CCEEEECCCcC-------------CCC--CCEEEECcHHHHHHHHHHHHHC
Confidence 78876522110 012 2345667766655555555533
No 122
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=82.05 E-value=21 Score=33.25 Aligned_cols=85 Identities=19% Similarity=0.115 Sum_probs=52.3
Q ss_pred CeEEEEEcCCC---CH------HHHHHHHHHHHHhCCCeEEEEEccc-CCchHHHHHHHHHhhCCCeEEEE--ecCCCCc
Q 029271 53 PIVGIIMESDL---DL------PVMNDAARTLSDFGVPYEIKILPPH-QNCKEALSYALSAKERGIKIIIV--GDGVEAH 120 (196)
Q Consensus 53 ~~V~IimGS~S---D~------~~~~~~~~~l~~~gi~~ev~V~SaH-R~p~~~~~~~~~~e~~~~~V~Ia--vAG~sa~ 120 (196)
++|++++||.. .. +..+++.+.|++.|+ ++-..+.= .++++..+..+.++..+++.+|. ..+...+
T Consensus 1 ~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~tf~~~~ 78 (452)
T cd00578 1 PKIGFVTGSQHLYGEELLEQVEEYAREVADLLNELPV--EVVDKPEVTGTPDEARKAAEEFNEANCDGLIVWMHTFGPAK 78 (452)
T ss_pred CEEEEEEecccccChhHHHHHHHHHHHHHHHHhcCCc--eEEecCcccCCHHHHHHHHHHHhhcCCcEEEEcccccccHH
Confidence 36899999877 22 344455566666554 44333333 48888999999998888865555 3444444
Q ss_pred hhHhhhhccCCcEEEecCC
Q 029271 121 LSGVAAANSQILVIRVPLL 139 (196)
Q Consensus 121 L~gvvA~~t~~PVIgvP~~ 139 (196)
+-.-.+.....||+-.-+.
T Consensus 79 ~~~~~~~~~~~Pvll~a~~ 97 (452)
T cd00578 79 MWIAGLSELRKPVLLLATQ 97 (452)
T ss_pred HHHHHHHhcCCCEEEEeCC
Confidence 3333344568898765443
No 123
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=81.95 E-value=18 Score=29.89 Aligned_cols=81 Identities=19% Similarity=0.282 Sum_probs=52.9
Q ss_pred eEEEEEcCCCCH---HHHHHHHHHHHHh-CCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--
Q 029271 54 IVGIIMESDLDL---PVMNDAARTLSDF-GVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA-- 127 (196)
Q Consensus 54 ~V~IimGS~SD~---~~~~~~~~~l~~~-gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~-- 127 (196)
+|+++.++.+|. ...+.+.+.+++. |+ ++-+......++.-.++++++..++++.||........+...+..
T Consensus 1 ~ig~~~~~~~~~~~~~~~~~i~~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~ 78 (270)
T cd06308 1 VIGFSQCNLADPWRAAMNDEIQREASNYPDV--ELIIADAADDNSKQVADIENFIRQGVDLLIISPNEAAPLTPVVEEAY 78 (270)
T ss_pred CEEEEeeCCCCHHHHHHHHHHHHHHHhcCCc--EEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEecCchhhchHHHHHHH
Confidence 377888877772 4455666666765 65 455566667788888888888888888777665443333443332
Q ss_pred ccCCcEEEe
Q 029271 128 NSQILVIRV 136 (196)
Q Consensus 128 ~t~~PVIgv 136 (196)
....||+.+
T Consensus 79 ~~~ipvV~~ 87 (270)
T cd06308 79 RAGIPVILL 87 (270)
T ss_pred HCCCCEEEe
Confidence 356788866
No 124
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=81.83 E-value=8.8 Score=39.14 Aligned_cols=86 Identities=19% Similarity=0.169 Sum_probs=55.0
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcc---------------------------------cCC--chHHH
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPP---------------------------------HQN--CKEAL 97 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~Sa---------------------------------HR~--p~~~~ 97 (196)
.+|+|++++ -|-|-|.-+....-.+++....+|.++ -|. ++...
T Consensus 390 ~~IaIltsG-G~apGmNaairavv~~a~~~g~~v~gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~LGT~R~~~~~~~~ 468 (762)
T cd00764 390 LNIAIVNVG-APAAGMNAAVRSAVRYGLAHGHRPYAIYDGFEGLAKGQIVELGWIDVGGWTGRGGSELGTKRTLPKKDLE 468 (762)
T ss_pred cEEEEEecC-CCchhHHHHHHHHHHHHHHCCCEEEEEecCHHHhcCCCcccCCHHHHHHHHhCCcccccccCCCcHHHHH
Confidence 489999976 688888877665543333221222222 233 35777
Q ss_pred HHHHHHhhCCCeEEEEecCCCCchhH-hhhh------ccCCcEEEecCC
Q 029271 98 SYALSAKERGIKIIIVGDGVEAHLSG-VAAA------NSQILVIRVPLL 139 (196)
Q Consensus 98 ~~~~~~e~~~~~V~IavAG~sa~L~g-vvA~------~t~~PVIgvP~~ 139 (196)
++++++++.+++.+|.+.|-.+.-+. -++- ...+|||++|-.
T Consensus 469 ~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkT 517 (762)
T cd00764 469 TIAYNFQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPAT 517 (762)
T ss_pred HHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEeccc
Confidence 88899999999999988776443222 1221 146999999975
No 125
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=81.49 E-value=9.9 Score=26.49 Aligned_cols=59 Identities=24% Similarity=0.287 Sum_probs=42.9
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCC
Q 029271 54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 117 (196)
Q Consensus 54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~ 117 (196)
.|.|+.-+..+.+.+.++...|+.-|+.+++-.. .+.+..-.++ ++..|+..+|.+...
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~--~~~~~~~~~~---a~~~g~~~~iiig~~ 61 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVDLR--NEKLGKKIRE---AQLQKIPYILVVGDK 61 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHCCCEEEEECC--CCCHHHHHHH---HHHcCCCEEEEECcc
Confidence 5777877788899999999999999998877543 3555555544 456788766666544
No 126
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=81.44 E-value=6.1 Score=34.27 Aligned_cols=51 Identities=22% Similarity=0.433 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchH-----------HHHHHHHHhhCCCeEEE
Q 029271 62 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKE-----------ALSYALSAKERGIKIII 112 (196)
Q Consensus 62 ~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~-----------~~~~~~~~e~~~~~V~I 112 (196)
.+|++.++++.+.|.+.|||+-+-|+.-|..|.. +.++++.++.+|-.|+.
T Consensus 12 ~~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~l 73 (243)
T PF10096_consen 12 FSDLEKLKEIADYLYKYGIPFSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARGGEIVL 73 (243)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcCCEEEE
Confidence 5999999999999999999999999999887765 44566777788877765
No 127
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=81.22 E-value=29 Score=28.50 Aligned_cols=78 Identities=10% Similarity=0.148 Sum_probs=48.7
Q ss_pred EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCC--CCchhHhhhhcc
Q 029271 55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV--EAHLSGVAAANS 129 (196)
Q Consensus 55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~--sa~L~gvvA~~t 129 (196)
|+++..+.++ ....+.+.+.++++|+.. .+..-...++.-.++++.+...+++-+|...-. +..+..... .
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~gy~v--~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~~~~~--~ 77 (269)
T cd06293 2 IGLVVPDIANPFFAELADAVEEEADARGLSL--VLCATRNRPERELTYLRWLDTNHVDGLIFVTNRPDDGALAKLIN--S 77 (269)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHCCCEE--EEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHh--c
Confidence 6777765444 356778888889999654 444444567777888888888888755554321 122333332 3
Q ss_pred CCcEEEe
Q 029271 130 QILVIRV 136 (196)
Q Consensus 130 ~~PVIgv 136 (196)
..|||-+
T Consensus 78 ~~pvV~i 84 (269)
T cd06293 78 YGNIVLV 84 (269)
T ss_pred CCCEEEE
Confidence 4677765
No 128
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=81.01 E-value=28 Score=28.22 Aligned_cols=79 Identities=9% Similarity=0.084 Sum_probs=47.4
Q ss_pred EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCC
Q 029271 55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI 131 (196)
Q Consensus 55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~ 131 (196)
|+++.-..+| ....+.+.+.++++|+.. .+...-..++...++++.....+++.+|...+..... -.-.-....
T Consensus 2 i~~v~~~~~~~~~~~~~~~i~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~-~~~~~~~~i 78 (267)
T cd06284 2 ILVLVPDIANPFFSEILKGIEDEAREAGYGV--LLGDTRSDPEREQEYLDLLRRKQADGIILLDGSLPPT-ALTALAKLP 78 (267)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHHcCCeE--EEecCCCChHHHHHHHHHHHHcCCCEEEEecCCCCHH-HHHHHhcCC
Confidence 4555533333 445577888888999654 4444445677777888888888887666654432211 111222367
Q ss_pred cEEEe
Q 029271 132 LVIRV 136 (196)
Q Consensus 132 PVIgv 136 (196)
|||.+
T Consensus 79 pvv~~ 83 (267)
T cd06284 79 PIVQA 83 (267)
T ss_pred CEEEE
Confidence 99876
No 129
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=80.89 E-value=15 Score=27.41 Aligned_cols=71 Identities=15% Similarity=0.249 Sum_probs=44.6
Q ss_pred eEEEEEcCCCCHHHH--HHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCC
Q 029271 54 IVGIIMESDLDLPVM--NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI 131 (196)
Q Consensus 54 ~V~IimGS~SD~~~~--~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~ 131 (196)
+|.++||+--=-..+ +++++.|++.|+++++.=++. .++..++ +.+++||+..-.... ....
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~----~e~~~~~-----~~~D~iv~t~~~~~~-------~~~i 67 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRV----NEIETYM-----DGVHLICTTARVDRS-------FGDI 67 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecH----HHHhhhc-----CCCCEEEECCccccc-------cCCC
Confidence 688999876655555 899999999999988764444 3333222 346888775532221 2257
Q ss_pred cE-EEecCCC
Q 029271 132 LV-IRVPLLS 140 (196)
Q Consensus 132 PV-IgvP~~~ 140 (196)
|| .+.|..+
T Consensus 68 p~~~~~~llt 77 (94)
T PRK10310 68 PLVHGMPFVS 77 (94)
T ss_pred CEEEEeeccc
Confidence 74 4445544
No 130
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=80.75 E-value=29 Score=28.18 Aligned_cols=80 Identities=15% Similarity=0.197 Sum_probs=50.5
Q ss_pred EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhh-hhccC
Q 029271 55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA-AANSQ 130 (196)
Q Consensus 55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvv-A~~t~ 130 (196)
|+++....+| ....+.+.+.++++|.. +.+.+....++...++++++...+++-+|..+...+....+- +-.-.
T Consensus 2 I~vi~~~~~~~~~~~~~~g~~~~a~~~g~~--~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~ 79 (268)
T cd06289 2 IGLVINDLTNPFFAELAAGLEEVLEEAGYT--VFLANSGEDVERQEQLLSTMLEHGVAGIILCPAAGTSPDLLKRLAESG 79 (268)
T ss_pred EEEEecCCCcchHHHHHHHHHHHHHHcCCe--EEEecCCCChHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHhcC
Confidence 5666654333 33445666778889864 455555567888888888888888886666665444444221 22346
Q ss_pred CcEEEe
Q 029271 131 ILVIRV 136 (196)
Q Consensus 131 ~PVIgv 136 (196)
.|||.+
T Consensus 80 ipvV~~ 85 (268)
T cd06289 80 IPVVLV 85 (268)
T ss_pred CCEEEE
Confidence 788875
No 131
>PRK09526 lacI lac repressor; Reviewed
Probab=80.70 E-value=36 Score=29.26 Aligned_cols=84 Identities=8% Similarity=0.090 Sum_probs=48.7
Q ss_pred CCeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCC-CCchhHhhhh
Q 029271 52 APIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAAA 127 (196)
Q Consensus 52 ~~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~-sa~L~gvvA~ 127 (196)
+..|++++.+.++ ....+.+.+.++++|..+.+. .+-+..++...++++.+...+++-+|..... +..+.-+..-
T Consensus 63 ~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~i~-~~~~~~~~~~~~~l~~l~~~~vdGiii~~~~~~~~~~~~~~~ 141 (342)
T PRK09526 63 SLTIGLATTSLALHAPSQIAAAIKSRADQLGYSVVIS-MVERSGVEACQAAVNELLAQRVSGVIINVPLEDADAEKIVAD 141 (342)
T ss_pred CceEEEEeCCCCcccHHHHHHHHHHHHHHCCCEEEEE-eCCCChHHHHHHHHHHHHhcCCCEEEEecCCCcchHHHHHhh
Confidence 4579999976554 245667778888888655443 2222334556677777877888655543222 2223233322
Q ss_pred ccCCcEEEe
Q 029271 128 NSQILVIRV 136 (196)
Q Consensus 128 ~t~~PVIgv 136 (196)
....||+-+
T Consensus 142 ~~~iPvV~~ 150 (342)
T PRK09526 142 CADVPCLFL 150 (342)
T ss_pred cCCCCEEEE
Confidence 235777754
No 132
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=80.49 E-value=3.7 Score=39.32 Aligned_cols=52 Identities=12% Similarity=0.021 Sum_probs=46.0
Q ss_pred cccCCchHHHHHHHHHhhCCC---eEEEEecCC-CCchhHhhhhc--cCCcEEEecCC
Q 029271 88 PPHQNCKEALSYALSAKERGI---KIIIVGDGV-EAHLSGVAAAN--SQILVIRVPLL 139 (196)
Q Consensus 88 SaHR~p~~~~~~~~~~e~~~~---~V~IavAG~-sa~L~gvvA~~--t~~PVIgvP~~ 139 (196)
-.|++.+.+.++.+.+.+.++ +++||+.|+ ..-++|++|+. --.|.|.||+.
T Consensus 215 e~~k~l~~v~~~~~~l~~~~~~R~d~viaiGGG~v~D~agf~A~~y~RGi~~i~vPTT 272 (488)
T PRK13951 215 EEVKTLEHVSRAYYELVRMDFPRGKTIAGVGGGALTDFTGFVASTFKRGVGLSFYPTT 272 (488)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHHHhcCCCeEecCcc
Confidence 379999999999999999999 899999888 56799999985 67899999986
No 133
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=80.17 E-value=16 Score=30.40 Aligned_cols=80 Identities=14% Similarity=0.109 Sum_probs=50.0
Q ss_pred eEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--c
Q 029271 54 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--N 128 (196)
Q Consensus 54 ~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~--~ 128 (196)
+|++++.+.+| ....+.+.+.++++|.. +.+.... .+++..+.++++...+++-+|..+.........+-. .
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~~g~~--~~~~~~~-~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~~~~~~~ 77 (289)
T cd01540 1 KIGFIVKQPEEPWFQTEWKFAKKAAKEKGFT--VVKIDVP-DGEKVLSAIDNLGAQGAKGFVICVPDVKLGPAIVAKAKA 77 (289)
T ss_pred CeeeecCCCCCcHHHHHHHHHHHHHHHcCCE--EEEccCC-CHHHHHHHHHHHHHcCCCEEEEccCchhhhHHHHHHHHh
Confidence 46777776555 23345567788888864 5555555 677777788888788887666654332223333332 3
Q ss_pred cCCcEEEe
Q 029271 129 SQILVIRV 136 (196)
Q Consensus 129 t~~PVIgv 136 (196)
...|||.+
T Consensus 78 ~~iPvV~~ 85 (289)
T cd01540 78 YNMKVVAV 85 (289)
T ss_pred CCCeEEEe
Confidence 56799876
No 134
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=80.08 E-value=32 Score=28.31 Aligned_cols=79 Identities=18% Similarity=0.244 Sum_probs=50.0
Q ss_pred EEEEEcC---CCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--hcc
Q 029271 55 VGIIMES---DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANS 129 (196)
Q Consensus 55 V~IimGS---~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA--~~t 129 (196)
|+|+..+ .......+.+.+.++++|..+ -+......++...+.++.+...+++-+|...+.... ...+. -.-
T Consensus 2 Igvv~~~~~~~~~~~~~~~i~~~a~~~g~~~--~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~-~~~~~~~~~~ 78 (269)
T cd06281 2 IGCLVSDITNPLLAQLFSGAEDRLRAAGYSL--LIANSLNDPERELEILRSFEQRRMDGIIIAPGDERD-PELVDALASL 78 (269)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHHcCCEE--EEEeCCCChHHHHHHHHHHHHcCCCEEEEecCCCCc-HHHHHHHHhC
Confidence 5566543 445566677888888998754 444456678888888888888888766665543322 33322 223
Q ss_pred CCcEEEe
Q 029271 130 QILVIRV 136 (196)
Q Consensus 130 ~~PVIgv 136 (196)
..|||-+
T Consensus 79 ~ipvV~i 85 (269)
T cd06281 79 DLPIVLL 85 (269)
T ss_pred CCCEEEE
Confidence 5787765
No 135
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=79.47 E-value=31 Score=27.74 Aligned_cols=81 Identities=19% Similarity=0.269 Sum_probs=49.7
Q ss_pred eEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--c
Q 029271 54 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--N 128 (196)
Q Consensus 54 ~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~--~ 128 (196)
+|++|....++ ....+.+.+.+++.|+ ++.+......++...++++++...+++.+|........+...+.- .
T Consensus 1 ~ig~i~p~~~~~~~~~~~~~~~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~~~~~~~~~~~l~~ 78 (267)
T cd01536 1 KIGLVVPSLNNPFWQAMNKGAEAAAKELGV--ELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPVDSAALTPALKKANA 78 (267)
T ss_pred CEEEEeccccCHHHHHHHHHHHHHHHhcCc--eEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhHHHHHHHHHH
Confidence 36777754333 3345566666777775 455555556788888888888777888777765443333323322 2
Q ss_pred cCCcEEEe
Q 029271 129 SQILVIRV 136 (196)
Q Consensus 129 t~~PVIgv 136 (196)
...|+|.+
T Consensus 79 ~~ip~V~~ 86 (267)
T cd01536 79 AGIPVVTV 86 (267)
T ss_pred CCCcEEEe
Confidence 45788875
No 136
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=79.20 E-value=24 Score=30.02 Aligned_cols=81 Identities=14% Similarity=0.145 Sum_probs=51.7
Q ss_pred eEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEE-cccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--h
Q 029271 54 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKIL-PPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--A 127 (196)
Q Consensus 54 ~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~-SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA--~ 127 (196)
+|+++..+.+| ....+.+.+.++++|+ ++.+. .....++...++++++.+.+++-||..+.....+...+. -
T Consensus 1 ~I~vi~~~~~~~f~~~i~~gi~~~a~~~g~--~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~~~~~~~~~~~~~~~ 78 (298)
T cd06302 1 TIAFVPKVTGIPYFNRMEEGAKEAAKELGV--DAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVPNDPDALEPVLKKAR 78 (298)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHHHHhCC--eEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHHHH
Confidence 46777776666 2344567777888886 45553 455678888888888877788766666543332333322 2
Q ss_pred ccCCcEEEe
Q 029271 128 NSQILVIRV 136 (196)
Q Consensus 128 ~t~~PVIgv 136 (196)
....|||.+
T Consensus 79 ~~~iPvV~v 87 (298)
T cd06302 79 EAGIKVVTH 87 (298)
T ss_pred HCCCeEEEE
Confidence 346788865
No 137
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=79.01 E-value=40 Score=28.78 Aligned_cols=82 Identities=13% Similarity=0.180 Sum_probs=49.2
Q ss_pred CCeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--
Q 029271 52 APIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA-- 126 (196)
Q Consensus 52 ~~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA-- 126 (196)
+..|++++...++. ...+.+.+.+++.|.. +-+...+..++...++++.+...+++-+|........ ...+.
T Consensus 61 ~~~Igvv~~~~~~~~~~~l~~gi~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~~~~l 137 (328)
T PRK11303 61 TRSIGLIIPDLENTSYARIAKYLERQARQRGYQ--LLIACSDDQPDNEMRCAEHLLQRQVDALIVSTSLPPE-HPFYQRL 137 (328)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHHHHHcCCE--EEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC-hHHHHHH
Confidence 45799998655442 2344566677788865 4455556677777788888877788766654432211 11221
Q ss_pred hccCCcEEEe
Q 029271 127 ANSQILVIRV 136 (196)
Q Consensus 127 ~~t~~PVIgv 136 (196)
.....||+-+
T Consensus 138 ~~~~iPvV~v 147 (328)
T PRK11303 138 QNDGLPIIAL 147 (328)
T ss_pred HhcCCCEEEE
Confidence 2245788765
No 138
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=79.01 E-value=6.7 Score=33.99 Aligned_cols=84 Identities=14% Similarity=0.139 Sum_probs=48.6
Q ss_pred eEEEEEcCCCCHH-----HHHHHHHHHHHhCCCeEEEEEcccCC----chHHHHHHHHH--hhCCCeEEEEec----CCC
Q 029271 54 IVGIIMESDLDLP-----VMNDAARTLSDFGVPYEIKILPPHQN----CKEALSYALSA--KERGIKIIIVGD----GVE 118 (196)
Q Consensus 54 ~V~IimGS~SD~~-----~~~~~~~~l~~~gi~~ev~V~SaHR~----p~~~~~~~~~~--e~~~~~V~IavA----G~s 118 (196)
+|+|++|+.|+.- .+..+.+.|++.|.... +....+. ...+.+.+... ....+++++-.. |..
T Consensus 1 ~~~~~~gg~s~e~~~s~~s~~~i~~al~~~g~~v~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~g~~~~~ 78 (315)
T TIGR01205 1 RVAVLFGGKSAEHEISLVSAAAVLKALRDLGYDVY--PVDIDKMGSWTYKDLPQLILELGALLEGIDVVFPVLHGRYGED 78 (315)
T ss_pred CEEEEeCCCCCCeeeeHHHHHHHHHHHhhcCCEEE--EEeecCCccccccchHHHHhhccccCCCCCEEEEecCCCCCCC
Confidence 5999999999754 56788889999888533 3333321 11222222211 113466666543 335
Q ss_pred CchhHhhhhccCCcEEEecCCC
Q 029271 119 AHLSGVAAANSQILVIRVPLLS 140 (196)
Q Consensus 119 a~L~gvvA~~t~~PVIgvP~~~ 140 (196)
.++++++. ...+|++|.++.+
T Consensus 79 ~~~~~~le-~~gip~~g~~~~~ 99 (315)
T TIGR01205 79 GTIQGLLE-LMGIPYTGSGVLA 99 (315)
T ss_pred cHHHHHHH-HcCCCccCCCHHH
Confidence 66666664 3468888876543
No 139
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=78.79 E-value=8.6 Score=36.55 Aligned_cols=119 Identities=14% Similarity=0.184 Sum_probs=76.2
Q ss_pred CeEEEEE-cCCCCHHHHHHHHHHHHHhCCCeEE----EEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCch----hH
Q 029271 53 PIVGIIM-ESDLDLPVMNDAARTLSDFGVPYEI----KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL----SG 123 (196)
Q Consensus 53 ~~V~Iim-GS~SD~~~~~~~~~~l~~~gi~~ev----~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L----~g 123 (196)
.++.+++ =.-+-++-.+.+.+.|++-||+|++ ++- -+-..+.+-++-+.+..++.||++.|+|+|= ..
T Consensus 71 Kk~llvTDkni~~~~~~~~a~~~L~~~~I~~~vyD~v~~e---Ptv~s~~~alefak~~~fDs~vaiGGGSa~DtaKaaa 147 (465)
T KOG3857|consen 71 KKTLLVTDKNIAKLGLVKVAQDSLEENGINVEVYDKVQPE---PTVGSVTAALEFAKKKNFDSFVAIGGGSAHDTAKAAA 147 (465)
T ss_pred cceEEeeCCChhhcccHHHHHHHHHHcCCceEEecCccCC---CchhhHHHHHHHHHhcccceEEEEcCcchhhhHHHHH
Confidence 4677776 4556777888999999999999886 332 2222333333444466789999999999762 22
Q ss_pred hhh---------------------hccCCcEEEecCCCCC-----------------------------CChhhhhhhhc
Q 029271 124 VAA---------------------ANSQILVIRVPLLSED-----------------------------WSEDDVINSIR 153 (196)
Q Consensus 124 vvA---------------------~~t~~PVIgvP~~~~~-----------------------------~~G~DLlS~lq 153 (196)
..| ++-.+|.|++|+.++. +.-.|=+.|+.
T Consensus 148 L~Asn~~~eflDyvg~pigk~~~~s~p~lPLiAipTTaGTgSEtT~~AI~d~e~~k~K~gI~~k~ikP~lav~DPl~~~~ 227 (465)
T KOG3857|consen 148 LLASNGEGEFLDYVGPPIGKVKQSSKPLLPLIAIPTTAGTGSETTRFAIIDYEELKIKMGIIDKNIKPTLAVNDPLTMLG 227 (465)
T ss_pred HhhcCCCccchhccCCcccccccccccccceEecccCCCccccceeeEEecchhhheeeeeecccccceeeecChHHhcc
Confidence 233 3446899999997532 11245566777
Q ss_pred CCCCCeeeEEecCChhhHHHHHHHHH
Q 029271 154 MPSHVQVASVPRNNAKNAALYAVKVL 179 (196)
Q Consensus 154 mPsGvpvatV~I~~~~nAA~~AaqIL 179 (196)
||+-+ .+..|+.+=.+|.+-.
T Consensus 228 ~P~~v-----~a~tGfDvlcHalEsy 248 (465)
T KOG3857|consen 228 LPPRV-----TAATGFDVLCHALESY 248 (465)
T ss_pred CChHH-----hhhcchHHHHHHHHHH
Confidence 77754 2356666666665543
No 140
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=78.78 E-value=35 Score=27.98 Aligned_cols=80 Identities=20% Similarity=0.186 Sum_probs=51.8
Q ss_pred eEEEEEcCCCCHHHHH----HHHHHHHH-hCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh-
Q 029271 54 IVGIIMESDLDLPVMN----DAARTLSD-FGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA- 127 (196)
Q Consensus 54 ~V~IimGS~SD~~~~~----~~~~~l~~-~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~- 127 (196)
+|+++..+.+| ++.. .+.+.+++ .|+ ++.+...-..++...+.+++..+.+++-+|.....+......+.-
T Consensus 1 ~igvi~~~~~~-~~~~~~~~gi~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~l 77 (272)
T cd06301 1 KIGVSMANFDD-NFLTLLRNAMKEHAKVLGGV--ELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPVDTAATAPIVKAA 77 (272)
T ss_pred CeeEeecccCC-HHHHHHHHHHHHHHHHcCCc--EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhhHHHHHHH
Confidence 47777766555 4444 45555666 664 566655556778888888888777888776655444445555553
Q ss_pred -ccCCcEEEe
Q 029271 128 -NSQILVIRV 136 (196)
Q Consensus 128 -~t~~PVIgv 136 (196)
....|||.+
T Consensus 78 ~~~~iPvv~~ 87 (272)
T cd06301 78 NAAGIPLVYV 87 (272)
T ss_pred HHCCCeEEEe
Confidence 456799876
No 141
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=78.70 E-value=40 Score=28.66 Aligned_cols=83 Identities=4% Similarity=0.074 Sum_probs=51.9
Q ss_pred CCeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCC-chhHhhhh
Q 029271 52 APIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAA 127 (196)
Q Consensus 52 ~~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa-~L~gvvA~ 127 (196)
+..|++++.+.++ ....+.+.+.+++.|. ++-+......+++..++++.+...+++-+|....... ...-.+..
T Consensus 56 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~~~l~~ 133 (327)
T PRK10423 56 TRTIGMLITASTNPFYSELVRGVERSCFERGY--SLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQR 133 (327)
T ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhhHHHHHh
Confidence 4579999865443 3455677788888885 5555556667777778888888888875555433222 12222322
Q ss_pred ccCCcEEEe
Q 029271 128 NSQILVIRV 136 (196)
Q Consensus 128 ~t~~PVIgv 136 (196)
....||+.+
T Consensus 134 ~~~iPvV~i 142 (327)
T PRK10423 134 YPSVPTVMM 142 (327)
T ss_pred cCCCCEEEE
Confidence 235788765
No 142
>PF01761 DHQ_synthase: 3-dehydroquinate synthase; PDB: 3OKF_A 1NVA_B 1NUA_A 1NVE_D 1NVB_B 1SG6_A 1NR5_A 1NRX_B 1NVD_A 1NVF_C ....
Probab=78.48 E-value=3.8 Score=36.24 Aligned_cols=51 Identities=25% Similarity=0.289 Sum_probs=38.8
Q ss_pred ccCCchHHHHHHHHHhhCCC---eEEEEecCC-CCchhHhhhhc--cCCcEEEecCC
Q 029271 89 PHQNCKEALSYALSAKERGI---KIIIVGDGV-EAHLSGVAAAN--SQILVIRVPLL 139 (196)
Q Consensus 89 aHR~p~~~~~~~~~~e~~~~---~V~IavAG~-sa~L~gvvA~~--t~~PVIgvP~~ 139 (196)
-+|+.+.+.++.+.+-+.++ +++||+.|+ -.-|+|++|+. --.|.|.+|+.
T Consensus 8 ~~Ksl~~~~~i~~~l~~~~~~R~~~iiaiGGGvv~Dl~GFaAs~y~RGi~~i~vPTT 64 (260)
T PF01761_consen 8 ESKSLETVEKIYDALLEAGLDRDDLIIAIGGGVVGDLAGFAASTYMRGIPFIQVPTT 64 (260)
T ss_dssp GGSSHHHHHHHHHHHHHTT--TTEEEEEEESHHHHHHHHHHHHHBTT--EEEEEE-S
T ss_pred ccCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHHHccCCceEecccc
Confidence 47888888888888877767 588888777 67899999996 47899999986
No 143
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=78.26 E-value=36 Score=27.85 Aligned_cols=78 Identities=10% Similarity=0.121 Sum_probs=47.5
Q ss_pred EEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc--hhHhhhhcc
Q 029271 55 VGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH--LSGVAAANS 129 (196)
Q Consensus 55 V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~--L~gvvA~~t 129 (196)
|++++.+.+|. ...+.+.+.++++|..+ -+......+++..++++.....+++.+|..+..... +--.. .-
T Consensus 2 igvi~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~--~~ 77 (264)
T cd06274 2 IGLIIPDLENRSFARIAKRLEALARERGYQL--LIACSDDDPETERETVETLIARQVDALIVAGSLPPDDPYYLCQ--KA 77 (264)
T ss_pred EEEEeccccCchHHHHHHHHHHHHHHCCCEE--EEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCchHHHHHHH--hc
Confidence 67777665552 22344556667777654 444455577777888888888889877776654322 22222 23
Q ss_pred CCcEEEe
Q 029271 130 QILVIRV 136 (196)
Q Consensus 130 ~~PVIgv 136 (196)
..||+.+
T Consensus 78 ~ipvV~~ 84 (264)
T cd06274 78 GLPVVAL 84 (264)
T ss_pred CCCEEEe
Confidence 4577765
No 144
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=77.96 E-value=31 Score=32.98 Aligned_cols=73 Identities=10% Similarity=-0.048 Sum_probs=51.8
Q ss_pred CeEEEEE----cCCCCHHHHH-HHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh
Q 029271 53 PIVGIIM----ESDLDLPVMN-DAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA 127 (196)
Q Consensus 53 ~~V~Iim----GS~SD~~~~~-~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~ 127 (196)
.++.||. |..+.....+ ++...|+..|+.+++.++- .+....++++++...+++.||+ .|+.+.|--|+-|
T Consensus 112 kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~---~~ghA~~la~~~~~~~~D~VV~-vGGDGTlnEVvNG 187 (481)
T PLN02958 112 KRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETK---YQLHAKEVVRTMDLSKYDGIVC-VSGDGILVEVVNG 187 (481)
T ss_pred cEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEecc---CccHHHHHHHHhhhcCCCEEEE-EcCCCHHHHHHHH
Confidence 3566663 5555556554 5777999999998887664 3466777888876667776664 6778888888877
Q ss_pred cc
Q 029271 128 NS 129 (196)
Q Consensus 128 ~t 129 (196)
+-
T Consensus 188 L~ 189 (481)
T PLN02958 188 LL 189 (481)
T ss_pred Hh
Confidence 64
No 145
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=77.94 E-value=33 Score=27.31 Aligned_cols=81 Identities=12% Similarity=0.058 Sum_probs=53.6
Q ss_pred EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCC
Q 029271 55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI 131 (196)
Q Consensus 55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~ 131 (196)
|+++.-+.++ ....+.+.+.++++|+.+. +......+++..+.++++.+++++.+|.....+..+.--.+.....
T Consensus 2 i~~v~~~~~~~~~~~~~~g~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~~~~~~~~~~i 79 (264)
T cd06267 2 IGVIVPDISNPFFAELLRGIEEAAREAGYSVL--LCNSDEDPEKEREALELLLSRRVDGIILAPSRLDDELLEELAALGI 79 (264)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHcCCEEE--EEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCcchHHHHHHHHcCC
Confidence 5555544322 2334466666777886554 4555666778888888888889998888877777765222345678
Q ss_pred cEEEec
Q 029271 132 LVIRVP 137 (196)
Q Consensus 132 PVIgvP 137 (196)
|||.+=
T Consensus 80 pvv~~~ 85 (264)
T cd06267 80 PVVLVD 85 (264)
T ss_pred CEEEec
Confidence 999873
No 146
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=77.51 E-value=37 Score=27.62 Aligned_cols=81 Identities=11% Similarity=0.129 Sum_probs=46.6
Q ss_pred EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCch-HHHHHHHHHhhCCCeEEEEecCCCCchhHh-hhhcc
Q 029271 55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCK-EALSYALSAKERGIKIIIVGDGVEAHLSGV-AAANS 129 (196)
Q Consensus 55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~-~~~~~~~~~e~~~~~V~IavAG~sa~L~gv-vA~~t 129 (196)
|++++.+.++ ....+.+...++++|+.+.+. ......+ ...++.+.....+++-+|...+......-+ ....-
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~ 79 (270)
T cd01545 2 IGLLYDNPSPGYVSEIQLGALDACRDTGYQLVIE--PCDSGSPDLAERVRALLQRSRVDGVILTPPLSDNPELLDLLDEA 79 (270)
T ss_pred EEEEEcCCCcccHHHHHHHHHHHHHhCCCeEEEE--eCCCCchHHHHHHHHHHHHCCCCEEEEeCCCCCccHHHHHHHhc
Confidence 6777755443 445567777888888755544 3333333 555666666677887666665543332211 12335
Q ss_pred CCcEEEec
Q 029271 130 QILVIRVP 137 (196)
Q Consensus 130 ~~PVIgvP 137 (196)
..||+.+=
T Consensus 80 ~ipvv~i~ 87 (270)
T cd01545 80 GVPYVRIA 87 (270)
T ss_pred CCCEEEEe
Confidence 67888763
No 147
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=77.14 E-value=39 Score=27.69 Aligned_cols=68 Identities=12% Similarity=0.148 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--hccCCcEEEe
Q 029271 64 DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANSQILVIRV 136 (196)
Q Consensus 64 D~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA--~~t~~PVIgv 136 (196)
-....+.+.+.++++|+.+.+.... ...+...++.+.+...+++.||....... ..+. -....|||.+
T Consensus 17 ~~~~~~~i~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~l~~~~vdgiii~~~~~~---~~~~~l~~~~ipvV~~ 86 (268)
T cd06277 17 YSEIYRAIEEEAKKYGYNLILKFVS--DEDEEEFELPSFLEDGKVDGIILLGGIST---EYIKEIKELGIPFVLV 86 (268)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCC--CChHHHHHHHHHHHHCCCCEEEEeCCCCh---HHHHHHhhcCCCEEEE
Confidence 3556778888899999766555443 34455556666677778876666543322 1222 1235688865
No 148
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=76.90 E-value=13 Score=25.08 Aligned_cols=37 Identities=19% Similarity=0.040 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHH
Q 029271 63 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYAL 101 (196)
Q Consensus 63 SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~ 101 (196)
++=+.|.+++..|++.|++|+..-.. ..++...++.+
T Consensus 8 ~~Cp~C~~ak~~L~~~~i~~~~i~i~--~~~~~~~~~~~ 44 (75)
T cd03418 8 PNCPYCVRAKALLDKKGVDYEEIDVD--GDPALREEMIN 44 (75)
T ss_pred CCChHHHHHHHHHHHCCCcEEEEECC--CCHHHHHHHHH
Confidence 45699999999999999999865433 34555544443
No 149
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=76.31 E-value=37 Score=27.76 Aligned_cols=81 Identities=15% Similarity=0.141 Sum_probs=50.4
Q ss_pred EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--cc
Q 029271 55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NS 129 (196)
Q Consensus 55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~--~t 129 (196)
|++++-+.+| ....+.+.+.+++.|+.+. +......++.-.+.++++..++++.+|............+.- ..
T Consensus 2 i~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~--i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~ 79 (267)
T cd06322 2 IGASLLTQQHPFYIELANAMKEEAKKQKVNLI--VSIANQDLNKQLSDVEDFITKKVDAIVLSPVDSKGIRAAIAKAKKA 79 (267)
T ss_pred eeEeecCcccHHHHHHHHHHHHHHHhcCCEEE--EecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhhHHHHHHHHHC
Confidence 5677766555 2344677777888886554 444456777777888888888887666654333333333322 24
Q ss_pred CCcEEEec
Q 029271 130 QILVIRVP 137 (196)
Q Consensus 130 ~~PVIgvP 137 (196)
..|||.+-
T Consensus 80 ~ipvV~~~ 87 (267)
T cd06322 80 GIPVITVD 87 (267)
T ss_pred CCCEEEEc
Confidence 57888874
No 150
>PRK09492 treR trehalose repressor; Provisional
Probab=76.13 E-value=47 Score=28.13 Aligned_cols=61 Identities=15% Similarity=0.105 Sum_probs=42.7
Q ss_pred CCeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEe
Q 029271 52 APIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 114 (196)
Q Consensus 52 ~~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~Iav 114 (196)
+..|+++....++ ...++.+.+.+++.|. ++-+......++...++++.+...+++-+|..
T Consensus 62 ~~~Ig~i~~~~~~~~~~~~~~~i~~~~~~~gy--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~ 125 (315)
T PRK09492 62 DKVVGIIVSRLDSLSENQAVRTMLPAFYEQGY--DPIIMESQFSPEKVNEHLGVLKRRNVDGVILF 125 (315)
T ss_pred CCeEEEEecCCcCcccHHHHHHHHHHHHHcCC--eEEEEecCCChHHHHHHHHHHHhcCCCEEEEe
Confidence 3479998864433 4567778888888885 55566666777777788888877778755544
No 151
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=76.07 E-value=27 Score=29.34 Aligned_cols=81 Identities=15% Similarity=0.077 Sum_probs=51.1
Q ss_pred eEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCch-hHhhh-hc
Q 029271 54 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL-SGVAA-AN 128 (196)
Q Consensus 54 ~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L-~gvvA-~~ 128 (196)
+|+++..+.++ ....+.+.+.++++|. ++-+......+++..++++.+...+++-||......... +.+-. ..
T Consensus 2 ~ig~i~~~~~~~~~~~~~~gi~~~a~~~gy--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~~~~~~~~~~~~~~~ 79 (280)
T cd06315 2 NIIFVASDLKNGGILGVGEGVREAAKAIGW--NLRILDGRGSEAGQAAALNQAIALKPDGIVLGGVDAAELQAELELAQK 79 (280)
T ss_pred eEEEEecccCCcHHHHHHHHHHHHHHHcCc--EEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHH
Confidence 47777766554 2445566677788884 566666667788888899998888887666654332222 22222 23
Q ss_pred cCCcEEEe
Q 029271 129 SQILVIRV 136 (196)
Q Consensus 129 t~~PVIgv 136 (196)
-..|||-+
T Consensus 80 ~~iPvV~~ 87 (280)
T cd06315 80 AGIPVVGW 87 (280)
T ss_pred CCCCEEEe
Confidence 46788765
No 152
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=75.92 E-value=17 Score=31.08 Aligned_cols=58 Identities=22% Similarity=0.346 Sum_probs=45.4
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccC---------------------CchHHHHHHHHHhhCCCeEEE
Q 029271 54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQ---------------------NCKEALSYALSAKERGIKIII 112 (196)
Q Consensus 54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR---------------------~p~~~~~~~~~~e~~~~~V~I 112 (196)
++.+|-|-..|.+..+++++.++.+++. .+.+...|. +.+.+.++.+-+++.|.++.|
T Consensus 133 R~~vIPg~nd~~e~i~~ia~~l~~l~~~-~~~llpyh~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 133 RLPLIPGFTLSRENMQQALDVLIPLGIK-QIHLLPFHQYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHcCCc-eEEEecCCccchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEEe
Confidence 6788889888899999999999999876 788888886 234455566666677888876
No 153
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=75.81 E-value=43 Score=27.54 Aligned_cols=81 Identities=9% Similarity=0.075 Sum_probs=44.7
Q ss_pred CCeEEEEEcC-------CCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCch
Q 029271 52 APIVGIIMES-------DLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 121 (196)
Q Consensus 52 ~~~V~IimGS-------~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L 121 (196)
+..|+||+-+ .+| ....+.+.+.++++|+.+.+....-. +..++.+.....+++.+|..+....
T Consensus 3 s~~i~vi~p~~~~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~v~~~~~~----~~~~~~~~l~~~~~dgiii~~~~~~-- 76 (275)
T cd06295 3 TDTIALVVPEPHERDQSFSDPFFLSLLGGIADALAERGYDLLLSFVSSP----DRDWLARYLASGRADGVILIGQHDQ-- 76 (275)
T ss_pred ceEEEEEecCccccccccCCchHHHHHHHHHHHHHHcCCEEEEEeCCch----hHHHHHHHHHhCCCCEEEEeCCCCC--
Confidence 3468888864 222 23455678888889877665433211 2344545455567876666543222
Q ss_pred hHhhhh--ccCCcEEEecC
Q 029271 122 SGVAAA--NSQILVIRVPL 138 (196)
Q Consensus 122 ~gvvA~--~t~~PVIgvP~ 138 (196)
...+.- ....||+.+-.
T Consensus 77 ~~~~~~~~~~~ipvV~~~~ 95 (275)
T cd06295 77 DPLPERLAETGLPFVVWGR 95 (275)
T ss_pred hHHHHHHHhCCCCEEEECC
Confidence 122222 34689887654
No 154
>PRK12361 hypothetical protein; Provisional
Probab=75.75 E-value=10 Score=36.28 Aligned_cols=82 Identities=21% Similarity=0.210 Sum_probs=53.6
Q ss_pred CeEEEEE----cCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhc
Q 029271 53 PIVGIIM----ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN 128 (196)
Q Consensus 53 ~~V~Iim----GS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~ 128 (196)
.++.+|. |+.......+++.+.|++. +++++..+.. .....++++++..++.+++| ++|+.+.|.-|+.+.
T Consensus 243 ~~~~iI~NP~SG~g~~~~~~~~i~~~L~~~-~~~~v~~t~~---~~~a~~la~~~~~~~~d~Vi-v~GGDGTl~ev~~~l 317 (547)
T PRK12361 243 KRAWLIANPVSGGGKWQEYGEQIQRELKAY-FDLTVKLTTP---EISAEALAKQARKAGADIVI-ACGGDGTVTEVASEL 317 (547)
T ss_pred CceEEEECCCCCCCcHHHHHHHHHHHHhcC-CceEEEECCC---CccHHHHHHHHHhcCCCEEE-EECCCcHHHHHHHHH
Confidence 3555554 5545567888999999874 5555555432 34467777777667777655 578899999999886
Q ss_pred c--CCcEEEecCC
Q 029271 129 S--QILVIRVPLL 139 (196)
Q Consensus 129 t--~~PVIgvP~~ 139 (196)
. ..|+--+|.-
T Consensus 318 ~~~~~~lgiiP~G 330 (547)
T PRK12361 318 VNTDITLGIIPLG 330 (547)
T ss_pred hcCCCCEEEecCC
Confidence 3 4443334443
No 155
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=75.56 E-value=42 Score=27.28 Aligned_cols=78 Identities=17% Similarity=0.114 Sum_probs=46.9
Q ss_pred EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--cc
Q 029271 55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NS 129 (196)
Q Consensus 55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~--~t 129 (196)
|+++..+.+| ....+.+.+.++++|+. +.+...-..++...++++.+...+++-||........ ..+.- ..
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~--~~~~~l~~~ 77 (265)
T cd06299 2 IGVIVPDIRNPYFASLATAIQDAASAAGYS--TIIGNSDENPETENRYLDNLLSQRVDGIIVVPHEQSA--EQLEDLLKR 77 (265)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHHcCCE--EEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCh--HHHHHHHhC
Confidence 6677654433 34556777778888864 4444445577777788888888888755554433222 12211 24
Q ss_pred CCcEEEe
Q 029271 130 QILVIRV 136 (196)
Q Consensus 130 ~~PVIgv 136 (196)
..|||-+
T Consensus 78 ~ipvV~~ 84 (265)
T cd06299 78 GIPVVFV 84 (265)
T ss_pred CCCEEEE
Confidence 5687654
No 156
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=75.46 E-value=57 Score=28.75 Aligned_cols=84 Identities=13% Similarity=0.136 Sum_probs=54.6
Q ss_pred CCCeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh-
Q 029271 51 DAPIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA- 126 (196)
Q Consensus 51 ~~~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA- 126 (196)
+..+|++++.+..+. ...+.+.+.++++|. ++-+++....++...++++.+.+.+++-||........+...+.
T Consensus 24 ~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g~--~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~~~~~~~~~l~~ 101 (330)
T PRK10355 24 KEVKIGMAIDDLRLERWQKDRDIFVKKAESLGA--KVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVIKE 101 (330)
T ss_pred CCceEEEEecCCCchHHHHHHHHHHHHHHHcCC--EEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHH
Confidence 346899999654443 233445666777885 56667777888888899999988889866665543333323222
Q ss_pred -hccCCcEEEe
Q 029271 127 -ANSQILVIRV 136 (196)
Q Consensus 127 -~~t~~PVIgv 136 (196)
.....|||-+
T Consensus 102 ~~~~~iPvV~i 112 (330)
T PRK10355 102 AKQEGIKVLAY 112 (330)
T ss_pred HHHCCCeEEEE
Confidence 2345788877
No 157
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=75.13 E-value=27 Score=31.58 Aligned_cols=73 Identities=19% Similarity=0.244 Sum_probs=52.6
Q ss_pred CCCeEEEEEcCCC-----CHH----HHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeE-EEEecCCCCc
Q 029271 51 DAPIVGIIMESDL-----DLP----VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKI-IIVGDGVEAH 120 (196)
Q Consensus 51 ~~~~V~IimGS~S-----D~~----~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V-~IavAG~sa~ 120 (196)
..++++|+.|++| |.+ .++++...++..| ..+.|+.-.|||+++.+.++++-+....+ |.-..| .|=
T Consensus 145 ~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~-~nP 221 (311)
T PF06258_consen 145 PRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYG--GSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDGTG-ENP 221 (311)
T ss_pred CCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCC--CeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecCCC-CCc
Confidence 4679999999987 333 4556666667777 47999999999999999998876543444 444444 555
Q ss_pred hhHhhh
Q 029271 121 LSGVAA 126 (196)
Q Consensus 121 L~gvvA 126 (196)
..++++
T Consensus 222 y~~~La 227 (311)
T PF06258_consen 222 YLGFLA 227 (311)
T ss_pred HHHHHH
Confidence 666664
No 158
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.07 E-value=5.2 Score=35.52 Aligned_cols=86 Identities=14% Similarity=0.082 Sum_probs=48.1
Q ss_pred eEEEEE--cCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHH-HHHhhCCCeEEEEecCCCCchhHhhhhccC
Q 029271 54 IVGIIM--ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYA-LSAKERGIKIIIVGDGVEAHLSGVAAANSQ 130 (196)
Q Consensus 54 ~V~Iim--GS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~-~~~e~~~~~V~IavAG~sa~L~gvvA~~t~ 130 (196)
+|+|+. |...-.+..+++.+.|++.|+.+.+.-......+. ..... .+....+++.+|++.|=-.-|-.+=.....
T Consensus 2 ~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~-~~~~~~~~~~~~~~d~vi~iGGDGTlL~a~~~~~~~ 80 (277)
T PRK03708 2 RFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPE-FSEEDVLPLEEMDVDFIIAIGGDGTILRIEHKTKKD 80 (277)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCc-ccccccccccccCCCEEEEEeCcHHHHHHHHhcCCC
Confidence 477773 55566777888898899999876653211111110 00011 122223567777776654444333233457
Q ss_pred CcEEEecCCC
Q 029271 131 ILVIRVPLLS 140 (196)
Q Consensus 131 ~PVIgvP~~~ 140 (196)
.||+|+|.-+
T Consensus 81 ~pi~gIn~G~ 90 (277)
T PRK03708 81 IPILGINMGT 90 (277)
T ss_pred CeEEEEeCCC
Confidence 8999999743
No 159
>PRK10824 glutaredoxin-4; Provisional
Probab=74.97 E-value=18 Score=28.31 Aligned_cols=74 Identities=16% Similarity=0.039 Sum_probs=45.6
Q ss_pred CeEEEEEcCCC---CHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhcc
Q 029271 53 PIVGIIMESDL---DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS 129 (196)
Q Consensus 53 ~~V~IimGS~S---D~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t 129 (196)
..|+|+|=|+- ==|+|.++...|+.+|++|...-.- ..+ ++.+.++++ ++..
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~--~d~-~~~~~l~~~----------------------sg~~ 69 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDIL--QNP-DIRAELPKY----------------------ANWP 69 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEec--CCH-HHHHHHHHH----------------------hCCC
Confidence 46888886543 4578999999999999998643221 233 344444332 2445
Q ss_pred CCcEEEecCCCCCCChhh-hhhhhc
Q 029271 130 QILVIRVPLLSEDWSEDD-VINSIR 153 (196)
Q Consensus 130 ~~PVIgvP~~~~~~~G~D-LlS~lq 153 (196)
+.|-|= +.+...||.| |..+.+
T Consensus 70 TVPQIF--I~G~~IGG~ddl~~l~~ 92 (115)
T PRK10824 70 TFPQLW--VDGELVGGCDIVIEMYQ 92 (115)
T ss_pred CCCeEE--ECCEEEcChHHHHHHHH
Confidence 666654 2333457777 777665
No 160
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=74.86 E-value=21 Score=29.49 Aligned_cols=81 Identities=20% Similarity=0.155 Sum_probs=49.6
Q ss_pred eEEEEEcCC-CCH---HHHHHHHHHHHHhCCCeEEEEEcccC-CchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhc
Q 029271 54 IVGIIMESD-LDL---PVMNDAARTLSDFGVPYEIKILPPHQ-NCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN 128 (196)
Q Consensus 54 ~V~IimGS~-SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR-~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~ 128 (196)
+|++++.+. +|- ...+.+.+.++++|+.+.+. ..-. .++...+.++.+...+++.+|........+...+...
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~~g~~v~~~--~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~l~~~ 78 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKDLGVDVEYR--GPETFDVADMARLIEAAIAAKPDGIVVTIPDPDALDPAIKRA 78 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHHhCCEEEEE--CCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHHHH
Confidence 477788665 442 34456667778888765544 3333 6777778888888888886666554333334444322
Q ss_pred --cCCcEEEe
Q 029271 129 --SQILVIRV 136 (196)
Q Consensus 129 --t~~PVIgv 136 (196)
-..||+.+
T Consensus 79 ~~~~ipvV~~ 88 (271)
T cd06312 79 VAAGIPVISF 88 (271)
T ss_pred HHCCCeEEEe
Confidence 24688776
No 161
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=74.80 E-value=6.2 Score=29.42 Aligned_cols=82 Identities=17% Similarity=0.299 Sum_probs=55.6
Q ss_pred EEEEEcC--CCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhh--hhccC
Q 029271 55 VGIIMES--DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA--AANSQ 130 (196)
Q Consensus 55 V~IimGS--~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvv--A~~t~ 130 (196)
|.+++|+ +|.+ .++++.+.+++.|+++++.-+|. .+..+. ...+++++..--..-.+.-+- +....
T Consensus 2 Il~~Cg~G~sTS~-~~~ki~~~~~~~~~~~~v~~~~~----~~~~~~-----~~~~Diil~~Pqv~~~~~~i~~~~~~~~ 71 (96)
T cd05564 2 ILLVCSAGMSTSI-LVKKMKKAAEKRGIDAEIEAVPE----SELEEY-----IDDADVVLLGPQVRYMLDEVKKKAAEYG 71 (96)
T ss_pred EEEEcCCCchHHH-HHHHHHHHHHHCCCceEEEEecH----HHHHHh-----cCCCCEEEEChhHHHHHHHHHHHhccCC
Confidence 5566643 3444 68999999999999998887765 333222 134688888666666677775 45678
Q ss_pred CcEEEecCCC-CCCChh
Q 029271 131 ILVIRVPLLS-EDWSED 146 (196)
Q Consensus 131 ~PVIgvP~~~-~~~~G~ 146 (196)
.||..+|+.. +.++|-
T Consensus 72 ~pv~~I~~~~Y~~~dg~ 88 (96)
T cd05564 72 IPVAVIDMMDYGMMNGE 88 (96)
T ss_pred CcEEEcChHhcccCCHH
Confidence 8999999865 234443
No 162
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=74.77 E-value=23 Score=32.09 Aligned_cols=32 Identities=16% Similarity=0.096 Sum_probs=20.7
Q ss_pred hCCCeEEEEecCCCCchhHhhhh-ccCCcEEEe
Q 029271 105 ERGIKIIIVGDGVEAHLSGVAAA-NSQILVIRV 136 (196)
Q Consensus 105 ~~~~~V~IavAG~sa~L~gvvA~-~t~~PVIgv 136 (196)
+...+++++..=+...|++.+|+ ...+||+++
T Consensus 91 ~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~Hv 123 (365)
T TIGR03568 91 RLKPDLVVVLGDRFEMLAAAIAAALLNIPIAHI 123 (365)
T ss_pred HhCCCEEEEeCCchHHHHHHHHHHHhCCcEEEE
Confidence 33346666655477777766665 588899964
No 163
>PRK11175 universal stress protein UspE; Provisional
Probab=74.74 E-value=23 Score=30.31 Aligned_cols=67 Identities=18% Similarity=0.211 Sum_probs=41.8
Q ss_pred HHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHh--------hhhccCCcEEEecCC
Q 029271 70 DAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGV--------AAANSQILVIRVPLL 139 (196)
Q Consensus 70 ~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gv--------vA~~t~~PVIgvP~~ 139 (196)
++...++..|++++..+.--++..+ .+.+.+++.+++.+|.++-+...+... +.-+++.||+-+|..
T Consensus 73 ~~~~~~~~~~~~~~~~v~~~g~~~~---~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs~~~~l~~~~~~pvlvv~~~ 147 (305)
T PRK11175 73 EQAKPYLDAGIPIEIKVVWHNRPFE---AIIQEVIAGGHDLVVKMTHQHDKLESVIFTPTDWHLLRKCPCPVLMVKDQ 147 (305)
T ss_pred HHHHHHhhcCCceEEEEecCCCcHH---HHHHHHHhcCCCEEEEeCCCCcHHHhhccChhHHHHHhcCCCCEEEeccc
Confidence 3334444567877776652233333 344445567889888887655556554 345788999999863
No 164
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=74.74 E-value=57 Score=28.40 Aligned_cols=36 Identities=28% Similarity=0.457 Sum_probs=18.7
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCC-eEEEEEccc
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVP-YEIKILPPH 90 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~-~ev~V~SaH 90 (196)
|.++-|+|+ |.+-..++++.+++.|.. .|+.+.|.|
T Consensus 91 p~ivsi~g~--~~~~~~~~a~~~~~~G~d~iElN~~cP~ 127 (296)
T cd04740 91 PVIASIAGS--TVEEFVEVAEKLADAGADAIELNISCPN 127 (296)
T ss_pred cEEEEEecC--CHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 445555553 344555555566666654 455555443
No 165
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=74.65 E-value=54 Score=28.12 Aligned_cols=81 Identities=12% Similarity=0.108 Sum_probs=50.4
Q ss_pred CCeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--
Q 029271 52 APIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA-- 126 (196)
Q Consensus 52 ~~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA-- 126 (196)
+..|+++....++ ....+.+.+.+++.|+ ++-+......++...++++.+...+++-+|... .. ..+..+.
T Consensus 63 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~vdgiI~~~-~~-~~~~~~~~l 138 (331)
T PRK14987 63 SRAIGVLLPSLTNQVFAEVLRGIESVTDAHGY--QTMLAHYGYKPEMEQERLESMLSWNIDGLILTE-RT-HTPRTLKMI 138 (331)
T ss_pred CCEEEEEeCCCcchhHHHHHHHHHHHHHHCCC--EEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcC-CC-CCHHHHHHH
Confidence 3579998866554 3455667778888885 555555666677667777777777887665542 22 1223332
Q ss_pred hccCCcEEEe
Q 029271 127 ANSQILVIRV 136 (196)
Q Consensus 127 ~~t~~PVIgv 136 (196)
.....|||.+
T Consensus 139 ~~~~iPvV~~ 148 (331)
T PRK14987 139 EVAGIPVVEL 148 (331)
T ss_pred HhCCCCEEEE
Confidence 2346788864
No 166
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=74.27 E-value=65 Score=28.79 Aligned_cols=128 Identities=15% Similarity=0.234 Sum_probs=80.5
Q ss_pred CCCCeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCe-EEEEecCCCCchhHhh
Q 029271 50 ADAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIK-IIIVGDGVEAHLSGVA 125 (196)
Q Consensus 50 ~~~~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~-V~IavAG~sa~L~gvv 125 (196)
..+..|++++-+.++ .+.++.+.+.|++.|. .+-++..+..+++..++++.....+++ +||........+--.+
T Consensus 56 ~~s~~Ig~i~p~~~~~~~~~i~~gi~~~~~~~gy--~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l 133 (333)
T COG1609 56 GRTKTIGLVVPDITNPFFAEILKGIEEAAREAGY--SLLLANTDDDPEKEREYLETLLQKRVDGLILLGERPNDSLLELL 133 (333)
T ss_pred CCCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCC--EEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHH
Confidence 345689999987766 3455566666777775 777888788999999999999888886 5555433333444444
Q ss_pred hhccCCcEEEecCCCCCCChhhhhhhhcCCCCCeeeEEecCChhhHHHHHHHHHccC------------CHHHHHHHHHH
Q 029271 126 AANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIA------------DEDLLERIRKY 193 (196)
Q Consensus 126 A~~t~~PVIgvP~~~~~~~G~DLlS~lqmPsGvpvatV~I~~~~nAA~~AaqILa~~------------d~~l~~kl~~~ 193 (196)
... .+|++-+=-.... .+ +..|++||-.++-.++-.++... ...-.+|+..|
T Consensus 134 ~~~-~~P~V~i~~~~~~-------------~~--~~~V~~Dn~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~Gf 197 (333)
T COG1609 134 AAA-GIPVVVIDRSPPG-------------LG--VPSVGIDNFAGAYLATEHLIELGHRRIAFIGGPLDSSASRERLEGY 197 (333)
T ss_pred Hhc-CCCEEEEeCCCcc-------------CC--CCEEEEChHHHHHHHHHHHHHCCCceEEEEeCCCccccHhHHHHHH
Confidence 443 6777654332211 22 34466677766666655555542 22336677777
Q ss_pred Hh
Q 029271 194 VE 195 (196)
Q Consensus 194 r~ 195 (196)
++
T Consensus 198 ~~ 199 (333)
T COG1609 198 RA 199 (333)
T ss_pred HH
Confidence 64
No 167
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=74.16 E-value=29 Score=24.70 Aligned_cols=70 Identities=14% Similarity=0.102 Sum_probs=48.4
Q ss_pred eEEEEEcCCCCHH--HHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCC
Q 029271 54 IVGIIMESDLDLP--VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI 131 (196)
Q Consensus 54 ~V~IimGS~SD~~--~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~ 131 (196)
+|++++|+--... ..+++.+.+++.+++.++..++. .++.+ ..+++++||.-.-... .+..
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~~~~~~~~i~~~v~~~~~----~~~~~-----~~~~~Dliist~~~~~--------~~~~ 64 (89)
T cd05566 2 KILVACGTGVATSTVVASKVKELLKENGIDVKVEQCKI----AEVPS-----LLDDADLIVSTTKVPE--------DYGI 64 (89)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCCceEEEEecH----HHhhc-----ccCCCcEEEEcCCcCC--------CCCC
Confidence 6899998877776 46789999999999888766653 22211 1245788887554432 4578
Q ss_pred cEEEecCCC
Q 029271 132 LVIRVPLLS 140 (196)
Q Consensus 132 PVIgvP~~~ 140 (196)
|+|-+.+.-
T Consensus 65 p~i~v~~~l 73 (89)
T cd05566 65 PVINGLPFL 73 (89)
T ss_pred CEEEEeecc
Confidence 999887653
No 168
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=73.75 E-value=12 Score=33.05 Aligned_cols=78 Identities=21% Similarity=0.152 Sum_probs=51.1
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEE--EEEcccCC------chHHHHHHHHHhhCCCeEEEEecCCCCchhHh
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEI--KILPPHQN------CKEALSYALSAKERGIKIIIVGDGVEAHLSGV 124 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev--~V~SaHR~------p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gv 124 (196)
....|++|..- +...++++.|||+.++ .+.+ |.. ...+.++.+-++....+++++-.-+..+|++.
T Consensus 30 ~~~~~~tg~h~-----~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~pDiv~~~gd~~~~la~a 103 (365)
T TIGR00236 30 DSYVIVTAQHR-----EMLDQVLDLFHLPPDYDLNIMS-PGQTLGEITSNMLEGLEELLLEEKPDIVLVQGDTTTTLAGA 103 (365)
T ss_pred CEEEEEeCCCH-----HHHHHHHHhcCCCCCeeeecCC-CCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHH
Confidence 35788888852 5566677789997554 4444 422 22234455555566678888886577788777
Q ss_pred hhhc-cCCcEEEe
Q 029271 125 AAAN-SQILVIRV 136 (196)
Q Consensus 125 vA~~-t~~PVIgv 136 (196)
+++. ...||+.+
T Consensus 104 ~aa~~~~ipv~h~ 116 (365)
T TIGR00236 104 LAAFYLQIPVGHV 116 (365)
T ss_pred HHHHHhCCCEEEE
Confidence 7664 78899875
No 169
>PRK13059 putative lipid kinase; Reviewed
Probab=73.70 E-value=16 Score=32.10 Aligned_cols=74 Identities=12% Similarity=0.125 Sum_probs=46.7
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhcc----CCcEEE
Q 029271 60 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS----QILVIR 135 (196)
Q Consensus 60 GS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t----~~PVIg 135 (196)
|+.++....+++.+.|++.|+.+++....-+... +.+.++...+.+++| ++|+.+.+.-|+.+.. ..|+--
T Consensus 13 G~g~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~d~vi-~~GGDGTv~evv~gl~~~~~~~~lgv 87 (295)
T PRK13059 13 GENAIISELDKVIRIHQEKGYLVVPYRISLEYDL----KNAFKDIDESYKYIL-IAGGDGTVDNVVNAMKKLNIDLPIGI 87 (295)
T ss_pred cchhHHHHHHHHHHHHHHCCcEEEEEEccCcchH----HHHHHHhhcCCCEEE-EECCccHHHHHHHHHHhcCCCCcEEE
Confidence 4445556678889999999988776444433222 233444455667554 6788999988887764 345444
Q ss_pred ecC
Q 029271 136 VPL 138 (196)
Q Consensus 136 vP~ 138 (196)
+|.
T Consensus 88 iP~ 90 (295)
T PRK13059 88 LPV 90 (295)
T ss_pred ECC
Confidence 454
No 170
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=73.51 E-value=23 Score=31.01 Aligned_cols=81 Identities=12% Similarity=0.030 Sum_probs=51.1
Q ss_pred CeEEEEEcCCCC-----HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCC-eEEEEecCC---CCchhH
Q 029271 53 PIVGIIMESDLD-----LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI-KIIIVGDGV---EAHLSG 123 (196)
Q Consensus 53 ~~V~IimGS~SD-----~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~-~V~IavAG~---sa~L~g 123 (196)
.+|+|++|+.|- +.-++.+.+.|++.|..... .-.+. .+ ++........ .||+++-|. .+.+++
T Consensus 4 ~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~--~~~~~-~~----~~~~l~~~~~d~vf~~lhG~~ge~~~i~~ 76 (296)
T PRK14569 4 EKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVG--VDASG-KE----LVAKLLELKPDKCFVALHGEDGENGRVSA 76 (296)
T ss_pred cEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEE--EcCCc-hh----HHHHhhccCCCEEEEeCCCCCCCChHHHH
Confidence 489999999987 35567888889998886432 22222 11 2223333345 588877654 445666
Q ss_pred hhhhccCCcEEEecCCCC
Q 029271 124 VAAANSQILVIRVPLLSE 141 (196)
Q Consensus 124 vvA~~t~~PVIgvP~~~~ 141 (196)
++.. ..+|++|+.+.+.
T Consensus 77 ~le~-~gip~~Gs~~~a~ 93 (296)
T PRK14569 77 LLEM-LEIKHTSSSMKSS 93 (296)
T ss_pred HHHH-cCCCeeCCCHHHH
Confidence 6644 4689998776653
No 171
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=73.50 E-value=39 Score=28.07 Aligned_cols=81 Identities=16% Similarity=0.201 Sum_probs=47.7
Q ss_pred eEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEccc--CCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh-h
Q 029271 54 IVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPH--QNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA-A 127 (196)
Q Consensus 54 ~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaH--R~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA-~ 127 (196)
+|+|++.+.++. .+.+.+.+.++++|+.+.+ .... ...+...++++++.+.+++.+|..+.....+.-+.. -
T Consensus 1 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~--~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~~~~~~~~~~~~~ 78 (268)
T cd06306 1 KLCVLYPHLKDAYWLSVNYGMVEEAKRLGVSLKL--LEAGGYPNLAKQIAQLEDCAAWGADAILLGAVSPDGLNEILQQV 78 (268)
T ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHHHcCCEEEE--ecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHH
Confidence 477888765542 3334556777888875544 4332 234566678888888889877766544333221112 2
Q ss_pred ccCCcEEEe
Q 029271 128 NSQILVIRV 136 (196)
Q Consensus 128 ~t~~PVIgv 136 (196)
....|||-+
T Consensus 79 ~~giPvV~~ 87 (268)
T cd06306 79 AASIPVIAL 87 (268)
T ss_pred HCCCCEEEe
Confidence 345788765
No 172
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=73.45 E-value=32 Score=29.03 Aligned_cols=53 Identities=13% Similarity=0.083 Sum_probs=41.8
Q ss_pred CeEEEEEcCC--CCHHHHHHHHHHHHHhCCCeE-EEEEcccCCchHHHHHHHHHhh
Q 029271 53 PIVGIIMESD--LDLPVMNDAARTLSDFGVPYE-IKILPPHQNCKEALSYALSAKE 105 (196)
Q Consensus 53 ~~V~IimGS~--SD~~~~~~~~~~l~~~gi~~e-v~V~SaHR~p~~~~~~~~~~e~ 105 (196)
.+|.|+.||. .|..-..++.+.|++-||.++ +.+-..+.+.+.++.|.+...+
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~~ 163 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVNG 163 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhcC
Confidence 4788888776 455677788999999999877 4666688999999999887653
No 173
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=73.16 E-value=6.6 Score=29.45 Aligned_cols=78 Identities=14% Similarity=0.174 Sum_probs=52.4
Q ss_pred CeEEEEEcC--CCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--hc
Q 029271 53 PIVGIIMES--DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--AN 128 (196)
Q Consensus 53 ~~V~IimGS--~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA--~~ 128 (196)
.+|.+++|+ +|-+ .++++.+.+++.|+++++.-++... +.+.. ..+++++...-..-.+.-+-. ..
T Consensus 4 ~~ILl~C~~G~sSS~-l~~k~~~~~~~~gi~~~v~a~~~~~----~~~~~-----~~~Dvill~pqi~~~~~~i~~~~~~ 73 (95)
T TIGR00853 4 TNILLLCAAGMSTSL-LVNKMNKAAEEYGVPVKIAAGSYGA----AGEKL-----DDADVVLLAPQVAYMLPDLKKETDK 73 (95)
T ss_pred cEEEEECCCchhHHH-HHHHHHHHHHHCCCcEEEEEecHHH----HHhhc-----CCCCEEEECchHHHHHHHHHHHhhh
Confidence 367788753 3445 7799999999999999988776643 32222 236888886666666665543 33
Q ss_pred cCCcEEEecCCC
Q 029271 129 SQILVIRVPLLS 140 (196)
Q Consensus 129 t~~PVIgvP~~~ 140 (196)
...||.-+|+..
T Consensus 74 ~~ipv~~I~~~~ 85 (95)
T TIGR00853 74 KGIPVEVINGAQ 85 (95)
T ss_pred cCCCEEEeChhh
Confidence 456888888753
No 174
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=72.97 E-value=49 Score=26.79 Aligned_cols=77 Identities=13% Similarity=0.156 Sum_probs=46.5
Q ss_pred EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhh--hhcc
Q 029271 55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA--AANS 129 (196)
Q Consensus 55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvv--A~~t 129 (196)
|+++..+.+| ....+.+.+.++++|+.+.+. ...... ...+.++++..++++.+|..+..... ..+ +...
T Consensus 2 I~~i~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~--~~~~~~-~~~~~i~~~~~~~vdgiii~~~~~~~--~~~~~~~~~ 76 (266)
T cd06278 2 IGVVVADLDNPFYSELLEALSRALQARGYQPLLI--NTDDDE-DLDAALRQLLQYRVDGVIVTSGTLSS--ELAEECRRN 76 (266)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHCCCeEEEE--cCCCCH-HHHHHHHHHHHcCCCEEEEecCCCCH--HHHHHHhhc
Confidence 6677765554 334556777888999766544 333333 55667777778888766665543222 222 2334
Q ss_pred CCcEEEe
Q 029271 130 QILVIRV 136 (196)
Q Consensus 130 ~~PVIgv 136 (196)
..|||.+
T Consensus 77 ~ipvV~~ 83 (266)
T cd06278 77 GIPVVLI 83 (266)
T ss_pred CCCEEEE
Confidence 6788877
No 175
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=72.72 E-value=41 Score=27.55 Aligned_cols=81 Identities=15% Similarity=0.142 Sum_probs=47.7
Q ss_pred eEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--hc
Q 029271 54 IVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--AN 128 (196)
Q Consensus 54 ~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA--~~ 128 (196)
+|+++.-+.+|. ...+.+...++++|+ ++.+...-..+++..+.++++...+++.+|..+..+......+. ..
T Consensus 1 ~i~vi~~~~~~~~~~~~~~~i~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~l~~~~~ 78 (277)
T cd06319 1 QIAYIVSDLRIPFWQIMGRGVKSKAKALGY--DAVELSAENSAKKELENLRTAIDKGVSGIIISPTNSSAAVTLLKLAAQ 78 (277)
T ss_pred CeEEEeCCCCchHHHHHHHHHHHHHHhcCC--eEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCchhhhHHHHHHHHH
Confidence 366666655552 223455566778885 44555555677777777777777788877655444333333332 23
Q ss_pred cCCcEEEe
Q 029271 129 SQILVIRV 136 (196)
Q Consensus 129 t~~PVIgv 136 (196)
...|||.+
T Consensus 79 ~~ipvV~~ 86 (277)
T cd06319 79 AKIPVVIA 86 (277)
T ss_pred CCCCEEEE
Confidence 46788764
No 176
>PRK12757 cell division protein FtsN; Provisional
Probab=72.29 E-value=32 Score=30.85 Aligned_cols=65 Identities=17% Similarity=0.052 Sum_probs=52.9
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEE-------EE-EcccCCchHHHHHHHHHhhCCC-eEEEEecCC
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEI-------KI-LPPHQNCKEALSYALSAKERGI-KIIIVGDGV 117 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev-------~V-~SaHR~p~~~~~~~~~~e~~~~-~V~IavAG~ 117 (196)
....|=+||.+|.+-++....-|...|++..+ || .+...+.++..++.+.++..|+ .+||..+|+
T Consensus 183 ~~~~VQVGAF~~~~nAe~L~arL~~~G~~a~I~~~gg~yRVrVGPf~sr~~A~~~~~rLk~~G~~~~iiva~gg 256 (256)
T PRK12757 183 QRWMVQCGSFKGTEQAESVRAQLAFAGIESRITTGGGWNRVVLGPYNSKAAADKMLQRLKGAGHSGCIPLAAGG 256 (256)
T ss_pred ccEEEEEeeCCCHHHHHHHHHHHHhcCCceEEeecCCEEEEEeCCCCCHHHHHHHHHHHHHcCCCCeEEeccCC
Confidence 45678899999999999999999988886433 22 4567788899999999999888 788877764
No 177
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=72.15 E-value=69 Score=28.21 Aligned_cols=85 Identities=16% Similarity=0.071 Sum_probs=49.8
Q ss_pred CCeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhh-hh
Q 029271 52 APIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA-AA 127 (196)
Q Consensus 52 ~~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvv-A~ 127 (196)
+.+|+++.-+.++ ....+.+.+.++++|+...+.-..-.-..++..+.++.+.+.+++-||........+...+ +-
T Consensus 46 t~~Igvv~p~~~~~f~~~~~~gi~~aa~~~G~~l~i~~~~~~~~~~~q~~~i~~l~~~~vdgIIl~~~~~~~~~~~l~~~ 125 (343)
T PRK10936 46 AWKLCALYPHLKDSYWLSVNYGMVEEAKRLGVDLKVLEAGGYYNLAKQQQQLEQCVAWGADAILLGAVTPDGLNPDLELQ 125 (343)
T ss_pred CeEEEEEecCCCchHHHHHHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHHHH
Confidence 4578888865443 2233466777788886544432211234566667788888888976665544434433333 23
Q ss_pred ccCCcEEEe
Q 029271 128 NSQILVIRV 136 (196)
Q Consensus 128 ~t~~PVIgv 136 (196)
.-..||+.+
T Consensus 126 ~~giPvV~~ 134 (343)
T PRK10936 126 AANIPVIAL 134 (343)
T ss_pred HCCCCEEEe
Confidence 346788865
No 178
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=71.90 E-value=30 Score=29.57 Aligned_cols=76 Identities=12% Similarity=0.162 Sum_probs=48.5
Q ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccC-------------CchHHHHHHHHHhhCCCeEEEEecCCC
Q 029271 52 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQ-------------NCKEALSYALSAKERGIKIIIVGDGVE 118 (196)
Q Consensus 52 ~~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR-------------~p~~~~~~~~~~e~~~~~V~IavAG~s 118 (196)
.+.|.|.+|+... . ++.+.|+.+. .+.+.|.+.+. +.+.+.+++. . ++++|+-+|-+
T Consensus 192 ~~~iLv~~gg~~~-~---~~~~~l~~~~-~~~~~v~g~~~~~~~~~ni~~~~~~~~~~~~~m~---~--ad~vIs~~G~~ 261 (318)
T PF13528_consen 192 EPKILVYFGGGGP-G---DLIEALKALP-DYQFIVFGPNAADPRPGNIHVRPFSTPDFAELMA---A--ADLVISKGGYT 261 (318)
T ss_pred CCEEEEEeCCCcH-H---HHHHHHHhCC-CCeEEEEcCCcccccCCCEEEeecChHHHHHHHH---h--CCEEEECCCHH
Confidence 4578887777544 4 6677777766 45666666554 1244444443 2 68999977754
Q ss_pred CchhHhhhhccCCcEEEecCCC
Q 029271 119 AHLSGVAAANSQILVIRVPLLS 140 (196)
Q Consensus 119 a~L~gvvA~~t~~PVIgvP~~~ 140 (196)
.-. =+....+|+|-+|..+
T Consensus 262 t~~---Ea~~~g~P~l~ip~~~ 280 (318)
T PF13528_consen 262 TIS---EALALGKPALVIPRPG 280 (318)
T ss_pred HHH---HHHHcCCCEEEEeCCC
Confidence 322 2334678999999875
No 179
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=71.75 E-value=53 Score=26.69 Aligned_cols=81 Identities=12% Similarity=0.157 Sum_probs=48.6
Q ss_pred EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCC
Q 029271 55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI 131 (196)
Q Consensus 55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~ 131 (196)
|++|.-+.++ ....+.+.+.++++|+...+.-.. .-.++.-.++++.+.+..++-+|..........-.-.-.-..
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~i 80 (264)
T cd01574 2 IGVVTTDLALHGPSSTLAAIESAAREAGYAVTLSMLA-EADEEALRAAVRRLLAQRVDGVIVNAPLDDADAALAAAPADV 80 (264)
T ss_pred EEEEeCCCCcccHHHHHHHHHHHHHHCCCeEEEEeCC-CCchHHHHHHHHHHHhcCCCEEEEeCCCCChHHHHHHHhcCC
Confidence 5666654444 556788888999988765554332 223466777788887777876665544444332112222346
Q ss_pred cEEEe
Q 029271 132 LVIRV 136 (196)
Q Consensus 132 PVIgv 136 (196)
|||.+
T Consensus 81 pvv~~ 85 (264)
T cd01574 81 PVVFV 85 (264)
T ss_pred CEEEE
Confidence 88775
No 180
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=71.62 E-value=43 Score=27.63 Aligned_cols=80 Identities=21% Similarity=0.200 Sum_probs=50.5
Q ss_pred EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--hcc
Q 029271 55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANS 129 (196)
Q Consensus 55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA--~~t 129 (196)
|+++.=+.+| ....+.+.+.++++|+. +-+......++.-.++++.+..++++-+|......+.....+. -..
T Consensus 2 ~g~~~~~~~~~~~~~~~~~~~~~a~~~g~~--~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~i~~~~~~ 79 (273)
T cd06309 2 VGFSQVGAESPWRTAETKSIKDAAEKRGFD--LKFADAQQKQENQISAIRSFIAQGVDVIILAPVVETGWDPVLKEAKAA 79 (273)
T ss_pred eeeccCCCCCHHHHHHHHHHHHHHHhcCCE--EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCccccchHHHHHHHHC
Confidence 3444444555 45667788888898875 4455555577777788888888888766655444443333332 234
Q ss_pred CCcEEEe
Q 029271 130 QILVIRV 136 (196)
Q Consensus 130 ~~PVIgv 136 (196)
..|||.+
T Consensus 80 ~iPvV~~ 86 (273)
T cd06309 80 GIPVILV 86 (273)
T ss_pred CCCEEEE
Confidence 6788876
No 181
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=71.55 E-value=36 Score=29.72 Aligned_cols=85 Identities=13% Similarity=0.094 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc-------hhHhhhhcc-CCcEEE
Q 029271 64 DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-------LSGVAAANS-QILVIR 135 (196)
Q Consensus 64 D~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~-------L~gvvA~~t-~~PVIg 135 (196)
|.+.+.++.+.+++.++|..+.+. ++-....+.++++..++.|++-+..=.+..+. +.- ++-.+ .+||||
T Consensus 119 dp~~l~~iv~av~~~~~PVsvKiR-~~~~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~-i~~~~~~ipIIg 196 (231)
T TIGR00736 119 NKELLKEFLTKMKELNKPIFVKIR-GNCIPLDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKI-LSEEFNDKIIIG 196 (231)
T ss_pred CHHHHHHHHHHHHcCCCcEEEEeC-CCCCcchHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHH-HHHhcCCCcEEE
Confidence 999999999999988999887776 44455678899999999999755444444432 222 22233 488888
Q ss_pred ecCCCCCCChhhhhhhhc
Q 029271 136 VPLLSEDWSEDDVINSIR 153 (196)
Q Consensus 136 vP~~~~~~~G~DLlS~lq 153 (196)
. ++=.+..|..-++.
T Consensus 197 N---GgI~s~eda~e~l~ 211 (231)
T TIGR00736 197 N---NSIDDIESAKEMLK 211 (231)
T ss_pred E---CCcCCHHHHHHHHH
Confidence 2 22234445666665
No 182
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=71.41 E-value=25 Score=29.90 Aligned_cols=65 Identities=15% Similarity=0.168 Sum_probs=49.0
Q ss_pred HHHHhCCCeEEEEEcc-c---CCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCcEEEecCC
Q 029271 74 TLSDFGVPYEIKILPP-H---QNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 139 (196)
Q Consensus 74 ~l~~~gi~~ev~V~Sa-H---R~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PVIgvP~~ 139 (196)
.++.||+... .+.+. | -+|+++.++.+.+++.++++++.=.+.+..+.-.+|-.+..||+-+.+.
T Consensus 163 ~~~~~gl~~~-~~~~~~~~~~ps~~~l~~l~~~ik~~~v~~i~~e~~~~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 163 FAKRYGLKVI-GVIEISPGEEPSPKDLAELIKLIKENKVKCIFTEPQFSSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp HHHHTT-EEE-EEESSSSSSSS-HHHHHHHHHHHHHTT-SEEEEETTS-THHHHHHHHCCT-EEEESSTT
T ss_pred HHHhcCCcee-eeeccccccCCCHHHHHHHHHHhhhcCCcEEEecCCCChHHHHHHHHHcCCcEEEeCCC
Confidence 4468998743 33322 2 4788999999999999999999999999999999999999999888777
No 183
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=71.41 E-value=22 Score=31.37 Aligned_cols=59 Identities=10% Similarity=-0.062 Sum_probs=45.2
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHHH-hCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEec
Q 029271 54 IVGIIMESDLDLPVMNDAARTLSD-FGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 115 (196)
Q Consensus 54 ~V~IimGS~SD~~~~~~~~~~l~~-~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavA 115 (196)
+|++++|...|.-.+....+.|++ -++++++-+++-|. +...++.+.+.-. .++.+.+.
T Consensus 2 ~i~~~~gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~--~~~~~~~~~~~i~-~~~~~~~~ 61 (365)
T TIGR00236 2 KVSIVLGTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHR--EMLDQVLDLFHLP-PDYDLNIM 61 (365)
T ss_pred eEEEEEecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCH--HHHHHHHHhcCCC-CCeeeecC
Confidence 699999999999999999999986 58899999999996 4555555544322 34555553
No 184
>PRK13057 putative lipid kinase; Reviewed
Probab=71.27 E-value=26 Score=30.49 Aligned_cols=70 Identities=16% Similarity=0.177 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhc--cCCcEEEecCCC
Q 029271 66 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN--SQILVIRVPLLS 140 (196)
Q Consensus 66 ~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~--t~~PVIgvP~~~ 140 (196)
...+++.+.|++.|+.+++..+ +.+....+++++. .++.+.+| ++|+.+.+.-|+.+. +..|.--+|.-+
T Consensus 13 ~~~~~i~~~l~~~g~~~~~~~t---~~~~~a~~~~~~~-~~~~d~ii-v~GGDGTv~~v~~~l~~~~~~lgiiP~GT 84 (287)
T PRK13057 13 AALAAARAALEAAGLELVEPPA---EDPDDLSEVIEAY-ADGVDLVI-VGGGDGTLNAAAPALVETGLPLGILPLGT 84 (287)
T ss_pred hhHHHHHHHHHHcCCeEEEEec---CCHHHHHHHHHHH-HcCCCEEE-EECchHHHHHHHHHHhcCCCcEEEECCCC
Confidence 4577889999999998776654 4566667777663 44566554 678899998888775 445644455433
No 185
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=71.11 E-value=6.5 Score=35.09 Aligned_cols=31 Identities=6% Similarity=-0.026 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCH-----HHHHHHHHHHHHhCCCe
Q 029271 52 APIVGIIMESDLDL-----PVMNDAARTLSDFGVPY 82 (196)
Q Consensus 52 ~~~V~IimGS~SD~-----~~~~~~~~~l~~~gi~~ 82 (196)
+.+|+|++|+.|+. .-++.+.+.|++.|...
T Consensus 3 ~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~ 38 (333)
T PRK01966 3 KMRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEV 38 (333)
T ss_pred CcEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEE
Confidence 34899999999994 56678888888777653
No 186
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=70.93 E-value=12 Score=26.36 Aligned_cols=58 Identities=19% Similarity=0.012 Sum_probs=39.0
Q ss_pred eEEEEEcCC---CCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecC
Q 029271 54 IVGIIMESD---LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 116 (196)
Q Consensus 54 ~V~IimGS~---SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG 116 (196)
.|+|+.-+. .+.+.+.+++..|+..|+.+++-.. -+.+. +-++.++..|+..+|.+..
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~--~~~l~---k~i~~a~~~g~~~~iiiG~ 63 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDR--NERPG---VKFADADLIGIPYRIVVGK 63 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECC--CCCcc---cchhHHHhcCCCEEEEECC
Confidence 588888766 4677888888889888988776432 23333 3345556778875555543
No 187
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=70.76 E-value=8 Score=35.19 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=32.0
Q ss_pred CchHHHHHHHHHhhCCCeEEEEecCCCCchhHh-hhhccCCcEEEecCC
Q 029271 92 NCKEALSYALSAKERGIKIIIVGDGVEAHLSGV-AAANSQILVIRVPLL 139 (196)
Q Consensus 92 ~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gv-vA~~t~~PVIgvP~~ 139 (196)
.++...+.++++++.+++.+|.+.|- ..+.+. .=+...+||||+|-.
T Consensus 77 ~~~~~~~~~~~l~~~~Id~Li~IGGd-gs~~~a~~L~e~~i~vigiPkT 124 (317)
T cd00763 77 DEEGQAKAIEQLKKHGIDALVVIGGD-GSYMGAMRLTEHGFPCVGLPGT 124 (317)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCc-hHHHHHHHHHHcCCCEEEeccc
Confidence 34566777888888888888888774 334333 223346999999975
No 188
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=70.45 E-value=36 Score=29.34 Aligned_cols=51 Identities=24% Similarity=0.279 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecC
Q 029271 64 DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 116 (196)
Q Consensus 64 D~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG 116 (196)
|.+.+.++.+.+++.++|..+++..-+- +...++++.+++.|++.|-.-++
T Consensus 124 ~p~~l~eiv~avr~~~~pVsvKir~g~~--~~~~~la~~l~~aG~d~ihv~~~ 174 (233)
T cd02911 124 DPERLSEFIKALKETGVPVSVKIRAGVD--VDDEELARLIEKAGADIIHVDAM 174 (233)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEEcCCcC--cCHHHHHHHHHHhCCCEEEECcC
Confidence 6788888888888889998888875433 67788888899999986544333
No 189
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=70.36 E-value=12 Score=33.57 Aligned_cols=82 Identities=18% Similarity=0.144 Sum_probs=50.4
Q ss_pred CeEEEEE--cCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--c
Q 029271 53 PIVGIIM--ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--N 128 (196)
Q Consensus 53 ~~V~Iim--GS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~--~ 128 (196)
.+|+++. |+....+.++++.+.|++.|+.+.+.....+..+ ...+. ....+.++++|++ |+.+.+-.++-. .
T Consensus 4 kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~--~~~~~-~~~~~~~d~vi~~-GGDGT~l~~~~~~~~ 79 (305)
T PRK02645 4 KQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNP--YPVFL-ASASELIDLAIVL-GGDGTVLAAARHLAP 79 (305)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhcc--ccchh-hccccCcCEEEEE-CCcHHHHHHHHHhcc
Confidence 3577775 4444457788999899999987666554433222 11121 2222346777766 667766666544 3
Q ss_pred cCCcEEEecC
Q 029271 129 SQILVIRVPL 138 (196)
Q Consensus 129 t~~PVIgvP~ 138 (196)
...||+|+.+
T Consensus 80 ~~~pv~gin~ 89 (305)
T PRK02645 80 HDIPILSVNV 89 (305)
T ss_pred CCCCEEEEec
Confidence 5889999887
No 190
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=69.84 E-value=57 Score=26.26 Aligned_cols=100 Identities=11% Similarity=0.065 Sum_probs=61.1
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHh--CCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecC---CCCchhHhhhh
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDF--GVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG---VEAHLSGVAAA 127 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~--gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG---~sa~L~gvvA~ 127 (196)
.+.+.++-+++|.+.+.+..+.+.++ |.. +- | ++-+.+++++. .|+.|-..+.| +..++..++..
T Consensus 4 ~~~v~lsv~d~dK~~l~~~a~~l~~ll~Gf~--l~---A---T~gTa~~L~~~--~Gi~v~~vi~~~~gg~~~i~~~I~~ 73 (142)
T PRK05234 4 RKRIALIAHDHKKDDLVAWVKAHKDLLEQHE--LY---A---TGTTGGLIQEA--TGLDVTRLLSGPLGGDQQIGALIAE 73 (142)
T ss_pred CcEEEEEEeccchHHHHHHHHHHHHHhcCCE--EE---E---eChHHHHHHhc--cCCeeEEEEcCCCCCchhHHHHHHc
Confidence 35667778999999999999999999 954 32 2 24455554432 26654333555 33445555555
Q ss_pred ccCCcEEEec--CCC-C-CCChhhhhhhhcCCCCCeeeEE
Q 029271 128 NSQILVIRVP--LLS-E-DWSEDDVINSIRMPSHVQVASV 163 (196)
Q Consensus 128 ~t~~PVIgvP--~~~-~-~~~G~DLlS~lqmPsGvpvatV 163 (196)
.-.-=||+.| ... + ..+|..|..... =.++||.|-
T Consensus 74 g~i~lVInt~dp~~~~~~~~D~~~IRR~Av-~~~IP~~T~ 112 (142)
T PRK05234 74 GKIDMLIFFRDPLTAQPHDPDVKALLRLAD-VWNIPVATN 112 (142)
T ss_pred CceeEEEEecCCCCCCcccchHHHHHHHHH-HcCCCEEcC
Confidence 5555599998 421 1 224555444433 278999874
No 191
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=69.83 E-value=62 Score=26.70 Aligned_cols=80 Identities=9% Similarity=0.067 Sum_probs=46.2
Q ss_pred EEEEEcCCC--CHHHHHHHHHHHHHhCCCeEEEEEc-ccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh-ccC
Q 029271 55 VGIIMESDL--DLPVMNDAARTLSDFGVPYEIKILP-PHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA-NSQ 130 (196)
Q Consensus 55 V~IimGS~S--D~~~~~~~~~~l~~~gi~~ev~V~S-aHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~-~t~ 130 (196)
|++|....+ -....+.+.+.++++|+. +.+.. -...++...++++.+..++++-+|............+.- ...
T Consensus 2 i~~v~~~~~~~~~~~~~gi~~~~~~~g~~--~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~~~~ 79 (271)
T cd06314 2 IAVVTNGASPFWKIAEAGVKAAGKELGVD--VEFVVPQQGTVNAQLRMLEDLIAEGVDGIAISPIDPKAVIPALNKAAAG 79 (271)
T ss_pred eEEEcCCCcHHHHHHHHHHHHHHHHcCCe--EEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEecCChhHhHHHHHHHhcC
Confidence 556653222 123445566777788854 54543 334777788888888888897666655433322233222 126
Q ss_pred CcEEEe
Q 029271 131 ILVIRV 136 (196)
Q Consensus 131 ~PVIgv 136 (196)
.|||.+
T Consensus 80 ipvV~~ 85 (271)
T cd06314 80 IKLITT 85 (271)
T ss_pred CCEEEe
Confidence 788876
No 192
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=69.60 E-value=60 Score=26.46 Aligned_cols=80 Identities=10% Similarity=0.019 Sum_probs=47.9
Q ss_pred EEEEEcCC-CC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--hc
Q 029271 55 VGIIMESD-LD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--AN 128 (196)
Q Consensus 55 V~IimGS~-SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA--~~ 128 (196)
|++|+-.. ++ ....+.+.+.++++|+. +.+......+++..++++.+...+++.+|..+.-.......+. -.
T Consensus 2 i~vi~p~~~~~~~~~~~~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~l~~~~~ 79 (275)
T cd06317 2 IGYTQNNVGSHSYQTTYNKAFQAAAEEDGVE--VIVLDANGDVARQAAQVEDLIAQKVDGIILWPTDGQAYIPGLRKAKQ 79 (275)
T ss_pred eEEEecccCCCHHHHHHHHHHHHHHHhcCCE--EEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecCCccccHHHHHHHHH
Confidence 56666443 33 22334566667788865 5555566778888888888878888866665543332223322 23
Q ss_pred cCCcEEEe
Q 029271 129 SQILVIRV 136 (196)
Q Consensus 129 t~~PVIgv 136 (196)
...|||.+
T Consensus 80 ~~iPvV~~ 87 (275)
T cd06317 80 AGIPVVIT 87 (275)
T ss_pred CCCcEEEe
Confidence 56788755
No 193
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=69.16 E-value=30 Score=29.72 Aligned_cols=78 Identities=15% Similarity=0.235 Sum_probs=50.4
Q ss_pred EEEEcCCCCHHHH----HHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--cc
Q 029271 56 GIIMESDLDLPVM----NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NS 129 (196)
Q Consensus 56 ~IimGS~SD~~~~----~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~--~t 129 (196)
+++|.+ .+-+.. +.+.+.++++|+ ++.+++..-.++...++++.+...+++.||......+.+...+.- ..
T Consensus 2 g~~~~~-~~~~~~~~~~~~i~~~a~~~g~--~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~~~~~~~~~l~~~~~~ 78 (302)
T TIGR02634 2 GVSIDD-LRLERWQKDRDIFVAAAESLGA--KVFVQSANGNEAKQISQIENLIARGVDVLVIIPQNGQVLSNAVQEAKDE 78 (302)
T ss_pred eeecCc-cchhhHHHHHHHHHHHHHhcCC--EEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHHC
Confidence 455543 243443 355666667774 666777777888888899999888898777665444444555433 34
Q ss_pred CCcEEEe
Q 029271 130 QILVIRV 136 (196)
Q Consensus 130 ~~PVIgv 136 (196)
..|||.+
T Consensus 79 ~iPvV~~ 85 (302)
T TIGR02634 79 GIKVVAY 85 (302)
T ss_pred CCeEEEe
Confidence 5688865
No 194
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=69.07 E-value=23 Score=26.95 Aligned_cols=59 Identities=12% Similarity=0.066 Sum_probs=39.8
Q ss_pred CeEEEEEcC--CCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCC
Q 029271 53 PIVGIIMES--DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 117 (196)
Q Consensus 53 ~~V~IimGS--~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~ 117 (196)
..|.|+.-+ ....+.+.+++..|+..|+.+++-.. +....- ++.++..|+..+|.+...
T Consensus 27 ~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~~---~sl~kq---lk~A~k~g~~~~iiiG~~ 87 (121)
T cd00858 27 IKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDDS---GSIGRR---YARQDEIGTPFCVTVDFD 87 (121)
T ss_pred cEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeCC---CCHHHH---HHHhHhcCCCEEEEECcC
Confidence 357777766 56677888888999999998877542 444444 455567788755555443
No 195
>PRK09230 cytosine deaminase; Provisional
Probab=69.01 E-value=41 Score=31.26 Aligned_cols=99 Identities=11% Similarity=0.103 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEcccCCchH--HHHHHHHHhhCCC--eEEEEecCCCCc--------hhHhhhhccCCc
Q 029271 65 LPVMNDAARTLSDFGVPYEIKILPPHQNCKE--ALSYALSAKERGI--KIIIVGDGVEAH--------LSGVAAANSQIL 132 (196)
Q Consensus 65 ~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~--~~~~~~~~e~~~~--~V~IavAG~sa~--------L~gvvA~~t~~P 132 (196)
.+.++++.+..+++|++.++++.-. ..+.+ ....++..+..|. +++++=+---++ +--.+ .....+
T Consensus 194 ~e~l~~~~~~A~~~g~~~~~H~~E~-~~~~~~~~~~~~~~~~~~gl~~~v~~~H~~~l~~~~~~~~~~~~~~L-a~~gv~ 271 (426)
T PRK09230 194 VESLHKAFALAQKYDRLIDVHCDEI-DDEQSRFVETVAALAHREGMGARVTASHTTAMHSYNGAYTSRLFRLL-KMSGIN 271 (426)
T ss_pred HHHHHHHHHHHHHhCCCcEEEECCC-CCcchHHHHHHHHHHHHhCCCCCEEEEecCchhcCCHHHHHHHHHHH-HHcCCe
Confidence 4678899999999999999998743 22222 2333444444454 444442222211 22233 235778
Q ss_pred EEEecCCCCCC----------Chhh-hhhhhcCCCCCeeeEEecCCh
Q 029271 133 VIRVPLLSEDW----------SEDD-VINSIRMPSHVQVASVPRNNA 168 (196)
Q Consensus 133 VIgvP~~~~~~----------~G~D-LlS~lqmPsGvpvatV~I~~~ 168 (196)
|+.||.++-.+ .|+. +..++. .|++|+. |-||.
T Consensus 272 vv~cP~sn~~l~~~~~~~p~~~g~~pi~~l~~--aGv~V~l-GTD~~ 315 (426)
T PRK09230 272 FVANPLVNIHLQGRFDTYPKRRGITRVKEMLE--AGINVCF-GHDDV 315 (426)
T ss_pred EEECcchhhhhcCCCCCCCCCCCCcCHHHHHH--CCCeEEE-ecCCC
Confidence 99999986433 5666 777776 8998864 56654
No 196
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=68.98 E-value=13 Score=26.51 Aligned_cols=56 Identities=21% Similarity=0.182 Sum_probs=37.8
Q ss_pred EEEEEcCC---CCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEec
Q 029271 55 VGIIMESD---LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 115 (196)
Q Consensus 55 V~IimGS~---SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavA 115 (196)
|+|+.=+. .-.+.+.++...|...|+.+++-- -++++. +=+++++..|+..+|.+.
T Consensus 2 v~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~--~~~~~~---k~~~~a~~~g~p~~iiiG 60 (94)
T PF03129_consen 2 VVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDD--SDKSLG---KQIKYADKLGIPFIIIIG 60 (94)
T ss_dssp EEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEES--SSSTHH---HHHHHHHHTTESEEEEEE
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEC--CCCchh---HHHHHHhhcCCeEEEEEC
Confidence 66777666 557888999999999998666554 333333 444566677886555543
No 197
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.85 E-value=24 Score=31.82 Aligned_cols=54 Identities=13% Similarity=0.156 Sum_probs=43.8
Q ss_pred CeEEEEEcCCCC-HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC
Q 029271 53 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 106 (196)
Q Consensus 53 ~~V~IimGS~SD-~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~ 106 (196)
..+.|..|...| .-+.+...+.|+++||.+++.-.+..-+.+++.+.++++.++
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 88 (284)
T PRK14190 34 GLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLNAD 88 (284)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 367777776655 455666688999999999999999999999999999988654
No 198
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=68.79 E-value=51 Score=25.32 Aligned_cols=95 Identities=8% Similarity=0.036 Sum_probs=60.5
Q ss_pred EEEcCCCCHHHHHHHHHHHHHh--CCCeEEEEEcccCCchHHHHHHHHHhhCCCe--EEEEe--cCCCCchhHhhhhccC
Q 029271 57 IIMESDLDLPVMNDAARTLSDF--GVPYEIKILPPHQNCKEALSYALSAKERGIK--IIIVG--DGVEAHLSGVAAANSQ 130 (196)
Q Consensus 57 IimGS~SD~~~~~~~~~~l~~~--gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~--V~Iav--AG~sa~L~gvvA~~t~ 130 (196)
.++++++|.+.+.+..+.|.++ |.. +- .++.+-+++++. .|+. .+ -+ .|...++...+-...-
T Consensus 3 ~l~a~d~dK~~~~~~a~~~~~ll~Gf~--i~------AT~gTa~~L~~~--~Gi~v~~v-k~~~~~g~~~i~~~i~~g~i 71 (115)
T cd01422 3 ALIAHDNKKEDLVEFVKQHQELLSRHR--LV------ATGTTGLLIQEA--TGLTVNRM-KSGPLGGDQQIGALIAEGEI 71 (115)
T ss_pred eEEecccchHHHHHHHHHHHHHhcCCE--EE------EechHHHHHHHh--hCCcEEEE-ecCCCCchhHHHHHHHcCce
Confidence 4678999999999999999998 874 22 235566666542 3453 33 34 4555556666655555
Q ss_pred CcEEEecCC-CC---CCChhhhhhhhcCCCCCeeeEE
Q 029271 131 ILVIRVPLL-SE---DWSEDDVINSIRMPSHVQVASV 163 (196)
Q Consensus 131 ~PVIgvP~~-~~---~~~G~DLlS~lqmPsGvpvatV 163 (196)
-=||+.|-+ +. .-+|..|....- =.++||.|-
T Consensus 72 ~~VInt~~~~~~~~~~~dg~~iRr~a~-~~~Ip~~Tt 107 (115)
T cd01422 72 DAVIFFRDPLTAQPHEPDVKALLRLCD-VYNIPLATN 107 (115)
T ss_pred eEEEEcCCCCCCCcccccHHHHHHHHH-HcCCCEEEc
Confidence 569999875 32 234666443332 289999884
No 199
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=68.30 E-value=9 Score=34.37 Aligned_cols=86 Identities=17% Similarity=0.127 Sum_probs=48.9
Q ss_pred CeEEEEE--cCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHH-HHhhCCCeEEEEecCCCCchhHhhhh--
Q 029271 53 PIVGIIM--ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYAL-SAKERGIKIIIVGDGVEAHLSGVAAA-- 127 (196)
Q Consensus 53 ~~V~Iim--GS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~-~~e~~~~~V~IavAG~sa~L~gvvA~-- 127 (196)
.+|+|+. +.....+.++++.+.|++.|+.+.+.-......+..-..... +...++++++|++.| .+.+-.++..
T Consensus 5 ~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GG-DGt~l~~~~~~~ 83 (295)
T PRK01231 5 RNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGG-DGSLLGAARALA 83 (295)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEEeC-cHHHHHHHHHhc
Confidence 3688884 556666778899999999998766543222111110001111 111235677776654 5544444432
Q ss_pred ccCCcEEEecCC
Q 029271 128 NSQILVIRVPLL 139 (196)
Q Consensus 128 ~t~~PVIgvP~~ 139 (196)
....||+|+.+-
T Consensus 84 ~~~~Pvlgin~G 95 (295)
T PRK01231 84 RHNVPVLGINRG 95 (295)
T ss_pred CCCCCEEEEeCC
Confidence 468899998873
No 200
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=68.28 E-value=19 Score=31.12 Aligned_cols=67 Identities=10% Similarity=0.020 Sum_probs=51.1
Q ss_pred EEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccC-CchHHHHHHHHHhhCCCeEEEEecCCCCchh
Q 029271 55 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQ-NCKEALSYALSAKERGIKIIIVGDGVEAHLS 122 (196)
Q Consensus 55 V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR-~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~ 122 (196)
+.=+.-+.||...++++.+..++.|....+.+.-+++ +|+.+.++++.+.+-|++.| .++=..+.+-
T Consensus 101 ~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i-~l~DT~G~~~ 168 (263)
T cd07943 101 VVRVATHCTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCV-YVTDSAGAML 168 (263)
T ss_pred EEEEEechhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEE-EEcCCCCCcC
Confidence 3344558899999999999999999988888866665 47888889999988888754 5555554443
No 201
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=68.14 E-value=47 Score=27.95 Aligned_cols=82 Identities=10% Similarity=0.056 Sum_probs=46.8
Q ss_pred eEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--c
Q 029271 54 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--N 128 (196)
Q Consensus 54 ~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~--~ 128 (196)
+|++|..+.++ ..+.+.+.+.++++|+.+.+. ...--.++...++++.+-..+++-||..+.........+.- .
T Consensus 1 ~i~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~-~~~~~~~~~~~~~l~~~~~~~~dgiii~~~~~~~~~~~i~~~~~ 79 (294)
T cd06316 1 KAAIVMHTSGSDWSNAQVRGAKDEFAKLGIEVVAT-TDAQFDPAKQVADIETTISQKPDIIISIPVDPVSTAAAYKKVAE 79 (294)
T ss_pred CeEEEecCCCChHHHHHHHHHHHHHHHcCCEEEEe-cCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCchhhhHHHHHHHH
Confidence 46777755443 345566778888998765422 11223556666777777677787665544333333344332 3
Q ss_pred cCCcEEEe
Q 029271 129 SQILVIRV 136 (196)
Q Consensus 129 t~~PVIgv 136 (196)
...|||.+
T Consensus 80 ~~iPvV~~ 87 (294)
T cd06316 80 AGIKLVFM 87 (294)
T ss_pred cCCcEEEe
Confidence 45688764
No 202
>PRK11175 universal stress protein UspE; Provisional
Probab=68.00 E-value=20 Score=30.62 Aligned_cols=67 Identities=12% Similarity=0.070 Sum_probs=41.2
Q ss_pred HHHHHHHHhCCCeE-EEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHh--------hhhccCCcEEEecCCC
Q 029271 70 DAARTLSDFGVPYE-IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGV--------AAANSQILVIRVPLLS 140 (196)
Q Consensus 70 ~~~~~l~~~gi~~e-v~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gv--------vA~~t~~PVIgvP~~~ 140 (196)
...+.++.+|++.+ ..+ .+..|. ..+.+..+..+++++|.++-+-.++... +.-..+.||+-||+.+
T Consensus 227 ~l~~~~~~~~~~~~~~~v--~~G~~~--~~I~~~a~~~~~DLIVmG~~~~~~~~~~llGS~a~~v~~~~~~pVLvv~~~~ 302 (305)
T PRK11175 227 AMKALRQKFGIDEEQTHV--EEGLPE--EVIPDLAEHLDAELVILGTVGRTGLSAAFLGNTAEHVIDHLNCDLLAIKPDG 302 (305)
T ss_pred HHHHHHHHhCCChhheee--ccCCHH--HHHHHHHHHhCCCEEEECCCccCCCcceeecchHHHHHhcCCCCEEEEcCCC
Confidence 34555567888754 322 344444 3455666677889888888433334333 3456889999998643
No 203
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=67.72 E-value=34 Score=29.35 Aligned_cols=57 Identities=11% Similarity=-0.041 Sum_probs=37.7
Q ss_pred EEEcCCCCHHHHH----HHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEec
Q 029271 57 IIMESDLDLPVMN----DAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 115 (196)
Q Consensus 57 IimGS~SD~~~~~----~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavA 115 (196)
++.|+..|...-+ -+.+.-+++|+.+++.-.. . .++...+.++++.++|+++||+..
T Consensus 5 l~~g~~~D~~~n~~~~~G~~~~~~~~gv~~~~~e~~-~-~~~~~~~~i~~~~~~g~dlIi~~g 65 (258)
T cd06353 5 VYVGPIGDQGWNYAHDEGRKAAEKALGVEVTYVENV-P-EGADAERVLRELAAQGYDLIFGTS 65 (258)
T ss_pred EEeCCCCccchhHHHHHHHHHHHHhcCCeEEEEecC-C-chHhHHHHHHHHHHcCCCEEEECc
Confidence 3447888854433 3333335688876665432 2 678888888888888999888743
No 204
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=67.58 E-value=92 Score=27.84 Aligned_cols=83 Identities=13% Similarity=0.100 Sum_probs=55.3
Q ss_pred CeEEEEEcCCCCHHHHH----HHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh-
Q 029271 53 PIVGIIMESDLDLPVMN----DAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA- 127 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~----~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~- 127 (196)
.++++++-+.. -|+.. -+.+.++++|+.+.+. ...+-.++.-.++++++..++++.||....-.++|.+++--
T Consensus 24 ~~i~~v~k~~~-~pf~~~~~~Gi~~aa~~~G~~v~~~-~~~~~d~~~q~~~i~~li~~~vdgIiv~~~d~~al~~~l~~a 101 (336)
T PRK15408 24 ERIAFIPKLVG-VGFFTSGGNGAKEAGKELGVDVTYD-GPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRA 101 (336)
T ss_pred cEEEEEECCCC-CHHHHHHHHHHHHHHHHhCCEEEEE-CCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHH
Confidence 47888885544 34443 4566777899765542 33444556666788888889998777776667777777743
Q ss_pred -ccCCcEEEec
Q 029271 128 -NSQILVIRVP 137 (196)
Q Consensus 128 -~t~~PVIgvP 137 (196)
....|||.+=
T Consensus 102 ~~~gIpVV~~d 112 (336)
T PRK15408 102 MQRGVKVLTWD 112 (336)
T ss_pred HHCCCeEEEeC
Confidence 3467998863
No 205
>PRK03202 6-phosphofructokinase; Provisional
Probab=67.50 E-value=8.1 Score=35.18 Aligned_cols=48 Identities=19% Similarity=0.164 Sum_probs=34.3
Q ss_pred CchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCcEEEecCC
Q 029271 92 NCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 139 (196)
Q Consensus 92 ~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PVIgvP~~ 139 (196)
.++...++++++++.+++.+|++.|-...-..-.=+....||||+|-.
T Consensus 78 ~~~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~~L~e~~i~vigiPkT 125 (320)
T PRK03202 78 DEEGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTEHGIPVIGLPGT 125 (320)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhcCCcEEEeccc
Confidence 456788888999999998888887754332222223458999999986
No 206
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=67.38 E-value=51 Score=24.82 Aligned_cols=92 Identities=18% Similarity=0.139 Sum_probs=56.1
Q ss_pred EEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecC---CCCchhHhhhh--ccCC
Q 029271 57 IIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG---VEAHLSGVAAA--NSQI 131 (196)
Q Consensus 57 IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG---~sa~L~gvvA~--~t~~ 131 (196)
.++-+++|-+.+.+.++.|..+|.. +-- ++-+.+++++ .|+++-..-.+ ....+..++.. ..++
T Consensus 3 ~isv~d~~K~~~~~~a~~l~~~G~~--i~A------T~gTa~~L~~---~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idl 71 (112)
T cd00532 3 FLSVSDHVKAMLVDLAPKLSSDGFP--LFA------TGGTSRVLAD---AGIPVRAVSKRHEDGEPTVDAAIAEKGKFDV 71 (112)
T ss_pred EEEEEcccHHHHHHHHHHHHHCCCE--EEE------CcHHHHHHHH---cCCceEEEEecCCCCCcHHHHHHhCCCCEEE
Confidence 4667778999999999999988863 321 2445555553 56755444332 23334444443 4444
Q ss_pred cEEEecCCCC----CCChhh-hhhhhcCCCCCeeeE
Q 029271 132 LVIRVPLLSE----DWSEDD-VINSIRMPSHVQVAS 162 (196)
Q Consensus 132 PVIgvP~~~~----~~~G~D-LlS~lqmPsGvpvat 162 (196)
||+.|-... .-+|.. ....+. -++||.|
T Consensus 72 -VIn~~~~~~~~~~~~dg~~iRR~A~~--~~Ip~~T 104 (112)
T cd00532 72 -VINLRDPRRDRCTDEDGTALLRLARL--YKIPVTT 104 (112)
T ss_pred -EEEcCCCCcccccCCChHHHHHHHHH--cCCCEEE
Confidence 999986332 334666 455555 6899887
No 207
>PRK11835 hypothetical protein; Provisional
Probab=67.16 E-value=13 Score=29.61 Aligned_cols=69 Identities=26% Similarity=0.418 Sum_probs=45.2
Q ss_pred CceecccccCCccchhhhhhhhhhhhccccCCCCCccccccccccccccCCCCeEEEEE---cCCCCHHHHHHHHHHHHH
Q 029271 1 MIHLSVNHQLSSRKKTLMVTLQLLRCQIVYVPAACPSTKSCLPRFLLLAADAPIVGIIM---ESDLDLPVMNDAARTLSD 77 (196)
Q Consensus 1 ~~~~~~~~~~~sgdk~l~~dkq~yr~l~~vt~~~~~~vk~v~~~~~~~~~~~~~V~Iim---GS~SD~~~~~~~~~~l~~ 77 (196)
.++|||-|+|| |.||=+.--+-...+.+ +++.. ..++..|+.=- .+.+++++|++....|.+
T Consensus 3 ~lqLSVVHRLP----------QsYRW~sG~~G~kVEpi----p~~~~-~~dn~LigLkLLShdg~~aw~vm~~L~~sL~e 67 (114)
T PRK11835 3 NLQLSVVHRLP----------QSYRWSAGFAGSKVEPI----PQNGA-DGDNSLIGLKLLSHDGDNAWSVMQKLSQALSD 67 (114)
T ss_pred ccEeeEEEecC----------cceeeccCccCceeeec----cCCCC-CCccceEEEEeecCCChhHHHHHHHHHHHHHh
Confidence 36899999998 67888776554333322 22211 11223444322 567889999999999999
Q ss_pred hCCCeEE
Q 029271 78 FGVPYEI 84 (196)
Q Consensus 78 ~gi~~ev 84 (196)
+.|.|.+
T Consensus 68 iqv~~~i 74 (114)
T PRK11835 68 IQVPCSV 74 (114)
T ss_pred hcccceE
Confidence 9998764
No 208
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=66.45 E-value=67 Score=27.41 Aligned_cols=79 Identities=13% Similarity=0.109 Sum_probs=49.8
Q ss_pred EEEEEcCC-CC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC--CCeEEEEecCCCCchhHhhhh-
Q 029271 55 VGIIMESD-LD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER--GIKIIIVGDGVEAHLSGVAAA- 127 (196)
Q Consensus 55 V~IimGS~-SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~--~~~V~IavAG~sa~L~gvvA~- 127 (196)
|+++.... +| ....+.+.+.++++|+. +-+......++...++++.+.+. +++-||..... .....++--
T Consensus 2 Igvi~~~~~~~~~~~~~~~gi~~~~~~~g~~--v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~~-~~~~~~~~~~ 78 (305)
T cd06324 2 VVFLNPGKSDEPFWNSVARFMQAAADDLGIE--LEVLYAERDRFLMLQQARTILQRPDKPDALIFTNEK-SVAPELLRLA 78 (305)
T ss_pred eEEecCCCCCCcHHHHHHHHHHHHHHhcCCe--EEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcCCc-cchHHHHHHH
Confidence 56677554 44 23345667777888865 44456677888888888888888 88766654432 234443322
Q ss_pred -ccCCcEEEe
Q 029271 128 -NSQILVIRV 136 (196)
Q Consensus 128 -~t~~PVIgv 136 (196)
.-.+|||-+
T Consensus 79 ~~~giPvV~~ 88 (305)
T cd06324 79 EGAGVKLFLV 88 (305)
T ss_pred HhCCCeEEEE
Confidence 345688865
No 209
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=66.34 E-value=37 Score=22.88 Aligned_cols=57 Identities=19% Similarity=0.139 Sum_probs=39.3
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEec
Q 029271 54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 115 (196)
Q Consensus 54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavA 115 (196)
.|.|+.-+..+.+.+.++...|..-|+.+++-... +..+. ..+.++..|+..++.+.
T Consensus 3 ~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~--~~~~~---~~~~a~~~~~~~~i~i~ 59 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGG--RKLKK---QFKYADRSGARFAVILG 59 (91)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCC--CCHHH---HHHHHHHcCCCEEEEEc
Confidence 47788777778888999999999999987775543 33333 44455667776555544
No 210
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.33 E-value=20 Score=32.42 Aligned_cols=54 Identities=11% Similarity=0.113 Sum_probs=43.8
Q ss_pred CeEEEEEcCC-CCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC
Q 029271 53 PIVGIIMESD-LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 106 (196)
Q Consensus 53 ~~V~IimGS~-SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~ 106 (196)
.++.|..|.. ++.-+.+-..+.|+++||.+++.-....-+.+++.+.++++.++
T Consensus 35 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D 89 (284)
T PRK14177 35 KLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNLD 89 (284)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3677777766 45666677788999999999999888888899999999988653
No 211
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=66.25 E-value=93 Score=27.38 Aligned_cols=113 Identities=14% Similarity=0.128 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHhCCC-----eEEEEEcccCCchHH---HHHHHHHhhC--CCeEEEEecCCCCchhHhhhhccCCcEE
Q 029271 65 LPVMNDAARTLSDFGVP-----YEIKILPPHQNCKEA---LSYALSAKER--GIKIIIVGDGVEAHLSGVAAANSQILVI 134 (196)
Q Consensus 65 ~~~~~~~~~~l~~~gi~-----~ev~V~SaHR~p~~~---~~~~~~~e~~--~~~V~IavAG~sa~L~gvvA~~t~~PVI 134 (196)
+..+++..+.+.+.||+ .|-.+-..-++.+.. ++-++.+... |+.+++++...|-+||
T Consensus 137 ~~~l~~~v~~a~~~GI~~~~IilDPgi~~~~~~~~~~~~~l~~i~~l~~~~pg~p~l~G~Sn~Sfglp------------ 204 (261)
T PRK07535 137 LAVAKELVEKADEYGIPPEDIYIDPLVLPLSAAQDAGPEVLETIRRIKELYPKVHTTCGLSNISFGLP------------ 204 (261)
T ss_pred HHHHHHHHHHHHHcCCCHhHEEEeCCCCcccCChHHHHHHHHHHHHHHHhCCCCCEEEEeCCCccCCc------------
Confidence 46666677777777874 444444444443333 3333444444 6677777666666552
Q ss_pred EecCCCCCCChhh-hhhhhcCCCCCeeeEEecC-ChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 029271 135 RVPLLSEDWSEDD-VINSIRMPSHVQVASVPRN-NAKNAALYAVKVLGIADEDLLERIRKYVEE 196 (196)
Q Consensus 135 gvP~~~~~~~G~D-LlS~lqmPsGvpvatV~I~-~~~nAA~~AaqILa~~d~~l~~kl~~~r~~ 196 (196)
+-.+++ .+-..-|-.|+--|.||.. ..--.++.|++.|.-.|..-.+=++.||+.
T Consensus 205 -------~r~~in~~fl~~a~~~Gl~~aI~np~~~~~~~~~~~~~~l~g~d~~~~~~~~~~r~~ 261 (261)
T PRK07535 205 -------NRKLINRAFLVMAMGAGMDSAILDPLDRDLMGAIAAAEALLGQDPYCRNYLKAFRKG 261 (261)
T ss_pred -------chHHHHHHHHHHHHHcCCCEEeeCCCCHHHHHHHHHHHHHhCCChhhHHHHHHHhcC
Confidence 113566 3333334677766655333 222366788999999999888888999863
No 212
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=66.18 E-value=31 Score=24.01 Aligned_cols=58 Identities=16% Similarity=0.035 Sum_probs=38.6
Q ss_pred eEEEEEcCC---CCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecC
Q 029271 54 IVGIIMESD---LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 116 (196)
Q Consensus 54 ~V~IimGS~---SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG 116 (196)
.|.|+.-+. .+.+.+.++...|+..|+.+++-.. .+ .+.+-.+.++..|+..+|.+..
T Consensus 3 ~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~~--~~---~~~k~~~~a~~~g~~~~iiig~ 63 (94)
T cd00738 3 DVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDDR--ER---KIGKKFREADLRGVPFAVVVGE 63 (94)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecCC--Cc---CHhHHHHHHHhCCCCEEEEECC
Confidence 467776666 6788888999999999986665332 23 4444445556778865555544
No 213
>PRK10329 glutaredoxin-like protein; Provisional
Probab=66.17 E-value=36 Score=24.41 Aligned_cols=39 Identities=13% Similarity=0.122 Sum_probs=26.1
Q ss_pred EEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHH
Q 029271 58 IMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSY 99 (196)
Q Consensus 58 imGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~ 99 (196)
+.+.+.. +.|..++..|++.||+|+..=. ...++...++
T Consensus 5 lYt~~~C-p~C~~ak~~L~~~gI~~~~idi--~~~~~~~~~~ 43 (81)
T PRK10329 5 IYTRNDC-VQCHATKRAMESRGFDFEMINV--DRVPEAAETL 43 (81)
T ss_pred EEeCCCC-HhHHHHHHHHHHCCCceEEEEC--CCCHHHHHHH
Confidence 3344444 9999999999999999875433 3444444333
No 214
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=66.04 E-value=25 Score=24.15 Aligned_cols=65 Identities=14% Similarity=-0.012 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCcEEEecCCCC
Q 029271 62 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSE 141 (196)
Q Consensus 62 ~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PVIgvP~~~~ 141 (196)
.+.=|.|.+++..|++.|++|+..=.. ..++...++.+ ..+....|+|-+ .+.
T Consensus 6 ~~~Cp~C~~a~~~L~~~~i~~~~~di~--~~~~~~~~~~~-----------------------~~g~~~vP~i~i--~g~ 58 (79)
T TIGR02181 6 KPYCPYCTRAKALLSSKGVTFTEIRVD--GDPALRDEMMQ-----------------------RSGRRTVPQIFI--GDV 58 (79)
T ss_pred cCCChhHHHHHHHHHHcCCCcEEEEec--CCHHHHHHHHH-----------------------HhCCCCcCEEEE--CCE
Confidence 466799999999999999998876443 34444444432 123466677632 233
Q ss_pred CCChhh-hhhhhc
Q 029271 142 DWSEDD-VINSIR 153 (196)
Q Consensus 142 ~~~G~D-LlS~lq 153 (196)
.++|.| +.++.+
T Consensus 59 ~igg~~~~~~~~~ 71 (79)
T TIGR02181 59 HVGGCDDLYALDR 71 (79)
T ss_pred EEcChHHHHHHHH
Confidence 467777 777665
No 215
>PRK08862 short chain dehydrogenase; Provisional
Probab=66.03 E-value=38 Score=28.21 Aligned_cols=25 Identities=0% Similarity=-0.072 Sum_probs=12.9
Q ss_pred CchHHHHHHHHHhhC---CCeEEEEecC
Q 029271 92 NCKEALSYALSAKER---GIKIIIVGDG 116 (196)
Q Consensus 92 ~p~~~~~~~~~~e~~---~~~V~IavAG 116 (196)
.++.+.+++++..+. .++++|..||
T Consensus 65 ~~~~~~~~~~~~~~~~g~~iD~li~nag 92 (227)
T PRK08862 65 SQESIRHLFDAIEQQFNRAPDVLVNNWT 92 (227)
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEECCc
Confidence 345555555544332 3466666665
No 216
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=65.66 E-value=14 Score=29.80 Aligned_cols=56 Identities=14% Similarity=0.025 Sum_probs=38.9
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH 120 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~ 120 (196)
.+|.|+=-| ....+..+..|.+-| ..|...|+.+..+.+.++ .++++|++.|...-
T Consensus 29 k~v~VvGrs---~~vG~pla~lL~~~g----atV~~~~~~t~~l~~~v~-----~ADIVvsAtg~~~~ 84 (140)
T cd05212 29 KKVLVVGRS---GIVGAPLQCLLQRDG----ATVYSCDWKTIQLQSKVH-----DADVVVVGSPKPEK 84 (140)
T ss_pred CEEEEECCC---chHHHHHHHHHHHCC----CEEEEeCCCCcCHHHHHh-----hCCEEEEecCCCCc
Confidence 356666544 356777788887665 456667877777776654 37999999998843
No 217
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=65.65 E-value=48 Score=23.84 Aligned_cols=70 Identities=10% Similarity=0.112 Sum_probs=46.3
Q ss_pred eEEEEEcCCCCHHH--HHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh-hccC
Q 029271 54 IVGIIMESDLDLPV--MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA-ANSQ 130 (196)
Q Consensus 54 ~V~IimGS~SD~~~--~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA-~~t~ 130 (196)
+|.+++|+---... ..++.+.+++.|+..++.-.+.-. . + +.+++||+- ..|.--+- ....
T Consensus 2 kilvvCg~G~gtS~ml~~ki~~~~~~~~~~~~v~~~~~~~----~-------~-~~~Dliitt----~~l~~~~~~~~~~ 65 (87)
T cd05567 2 KIVFACDAGMGSSAMGASVLRKKLKKAGLEIPVTNSAIDE----L-------P-SDADLVVTH----ASLTDRAKKKAPQ 65 (87)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCCceEEEEcchhh----C-------C-CCCCEEEEC----hHHHHHHHhcCCC
Confidence 58899988766666 478999999999988776554422 1 1 346888884 34443332 2346
Q ss_pred CcEEEecCC
Q 029271 131 ILVIRVPLL 139 (196)
Q Consensus 131 ~PVIgvP~~ 139 (196)
.|||.+=+.
T Consensus 66 ~~vi~v~~~ 74 (87)
T cd05567 66 AQHLSVDNF 74 (87)
T ss_pred CeEEEEecc
Confidence 899987543
No 218
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=65.56 E-value=26 Score=26.69 Aligned_cols=82 Identities=20% Similarity=0.178 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCC------cEEEecCCCC
Q 029271 68 MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI------LVIRVPLLSE 141 (196)
Q Consensus 68 ~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~------PVIgvP~~~~ 141 (196)
.+++...|+..+..+++..+.. .+...++....+.+...-.|.+.|+.+.|--++.+.... |+--+|. +
T Consensus 17 ~~~v~~~l~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~~~~ivv~GGDGTl~~vv~~l~~~~~~~~~~l~iiP~-G- 91 (130)
T PF00781_consen 17 WKKVEPALRAAGIDYEVIETES---AGHAEALARILALDDYPDVIVVVGGDGTLNEVVNGLMGSDREDKPPLGIIPA-G- 91 (130)
T ss_dssp HHHHHHHHHHTTCEEEEEEESS---TTHHHHHHHHHHHTTS-SEEEEEESHHHHHHHHHHHCTSTSSS--EEEEEE--S-
T ss_pred HHHHHHHHHHcCCceEEEEEec---cchHHHHHHHHhhccCccEEEEEcCccHHHHHHHHHhhcCCCccceEEEecC-C-
Confidence 3789999999999988887755 444444443222233323455567788888888775433 4444443 2
Q ss_pred CCChhhhhhhhcCCC
Q 029271 142 DWSEDDVINSIRMPS 156 (196)
Q Consensus 142 ~~~G~DLlS~lqmPs 156 (196)
. |-|+--++..|.
T Consensus 92 T--~N~~ar~lg~~~ 104 (130)
T PF00781_consen 92 T--GNDFARSLGIPS 104 (130)
T ss_dssp S--S-HHHHHTT--S
T ss_pred C--hhHHHHHcCCCC
Confidence 2 344555555444
No 219
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=65.28 E-value=77 Score=27.33 Aligned_cols=86 Identities=14% Similarity=0.220 Sum_probs=67.1
Q ss_pred CeEEEEEcCCCC--HHHHHH-HHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhc-
Q 029271 53 PIVGIIMESDLD--LPVMND-AARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN- 128 (196)
Q Consensus 53 ~~V~IimGS~SD--~~~~~~-~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~- 128 (196)
.++++++...+| +..+.+ +.+..+++|+...+.....+..+..-.+.++++-.++++.||....-+..+.+.+---
T Consensus 34 ~~i~~~~~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~d~~~Q~~~i~~~ia~~~daIiv~~~d~~~~~~~v~~a~ 113 (322)
T COG1879 34 KTIGVVVPTLGNPFFQAVRKGAEAAAKKLGVVVAVVIADAQNDVAKQIAQIEDLIAQGVDAIIINPVDPDALTPAVKKAK 113 (322)
T ss_pred ceEEEEeccCCChHHHHHHHHHHHHHHHcCCcEEEEecccccChHHHHHHHHHHHHcCCCEEEEcCCChhhhHHHHHHHH
Confidence 478999988888 333443 5677789998777888888888888888888888889999999999999999888654
Q ss_pred -cCCcEEEecC
Q 029271 129 -SQILVIRVPL 138 (196)
Q Consensus 129 -t~~PVIgvP~ 138 (196)
.-.|||.+=.
T Consensus 114 ~aGIpVv~~d~ 124 (322)
T COG1879 114 AAGIPVVTVDS 124 (322)
T ss_pred HCCCcEEEEec
Confidence 4469987543
No 220
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=65.26 E-value=8.1 Score=34.12 Aligned_cols=52 Identities=23% Similarity=0.254 Sum_probs=35.1
Q ss_pred EEEEEcccCCchHHHHHH-----HHHhhCCCe-EEEEecCCCCchhHhhhhccCCcEEE
Q 029271 83 EIKILPPHQNCKEALSYA-----LSAKERGIK-IIIVGDGVEAHLSGVAAANSQILVIR 135 (196)
Q Consensus 83 ev~V~SaHR~p~~~~~~~-----~~~e~~~~~-V~IavAG~sa~L~gvvA~~t~~PVIg 135 (196)
++-|...|..+++....+ +..+..|++ |++.+|||++ |.-.+.-.+..|||.
T Consensus 145 dl~vL~l~~~~~~~~~~l~~~~~~a~~edgAeaIiLGCAGms~-la~~Lq~~~gvPVID 202 (230)
T COG4126 145 DLPVLALEGPPEEAEALLVIEAAEALKEDGAEAIILGCAGMSD-LADQLQKAFGVPVID 202 (230)
T ss_pred CCCcccccCChHHHHHHHHHHHHHHhhhcCCCEEEEcCccHHH-HHHHHHHHhCCCccc
Confidence 345667777666665533 344556774 7778888875 588887777778774
No 221
>PRK10116 universal stress protein UspC; Provisional
Probab=64.95 E-value=56 Score=24.42 Aligned_cols=62 Identities=19% Similarity=0.278 Sum_probs=38.2
Q ss_pred HHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhh------hhccCCcEEEecCCC
Q 029271 76 SDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA------AANSQILVIRVPLLS 140 (196)
Q Consensus 76 ~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvv------A~~t~~PVIgvP~~~ 140 (196)
+..|++.+..+. .+..|. ..+++..++.+++.+|.++-...+|..+. .-.+..||+-||..+
T Consensus 74 ~~~~~~~~~~~~-~~G~~~--~~I~~~a~~~~~DLiV~g~~~~~~~~~~~s~a~~v~~~~~~pVLvv~~~~ 141 (142)
T PRK10116 74 QDADYPIEKTFI-AYGELS--EHILEVCRKHHFDLVICGNHNHSFFSRASCSAKRVIASSEVDVLLVPLTG 141 (142)
T ss_pred HhcCCCeEEEEE-ecCCHH--HHHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 456766542222 233333 45666667778888887665555566544 236889999999754
No 222
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=64.92 E-value=11 Score=34.01 Aligned_cols=47 Identities=21% Similarity=0.186 Sum_probs=31.6
Q ss_pred CchHHHHHHHHHhhCCCeEEEEecCCCCchhHh--hhhccCCcEEEecCC
Q 029271 92 NCKEALSYALSAKERGIKIIIVGDGVEAHLSGV--AAANSQILVIRVPLL 139 (196)
Q Consensus 92 ~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gv--vA~~t~~PVIgvP~~ 139 (196)
.++...+.++++++.+++.+|.+.|-.. +.+. ++-....||||+|-.
T Consensus 76 ~~~~~~~~~~~l~~~~Id~Li~IGGdgs-~~~a~~L~e~~~i~vigiPkT 124 (301)
T TIGR02482 76 TEEGRQKAVENLKKLGIEGLVVIGGDGS-YTGAQKLYEEGGIPVIGLPGT 124 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchH-HHHHHHHHHhhCCCEEeeccc
Confidence 3456777788888888887777766533 3222 222257999999975
No 223
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=64.69 E-value=24 Score=31.13 Aligned_cols=65 Identities=18% Similarity=0.191 Sum_probs=44.3
Q ss_pred EEEE-cCCCCH-HHHHHHHHHHHHhCCCeEEEEEc-------ccCCchHHHHHHHHHhhCCCeEEEEecCCCCc
Q 029271 56 GIIM-ESDLDL-PVMNDAARTLSDFGVPYEIKILP-------PHQNCKEALSYALSAKERGIKIIIVGDGVEAH 120 (196)
Q Consensus 56 ~Iim-GS~SD~-~~~~~~~~~l~~~gi~~ev~V~S-------aHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~ 120 (196)
+||. +|.-+. +..+++.+.|+++|....+.=.. +...-+|..++.+.+.+..++.|+++-|+.+.
T Consensus 2 ~iiapSs~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga 75 (282)
T cd07025 2 GIVAPSSPIDEEERLERAIARLESLGLEVVVGPHVLARDGYLAGTDEERAADLNAAFADPEIKAIWCARGGYGA 75 (282)
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhCCCEEEeccchhhhcCccCCCHHHHHHHHHHHhhCCCCCEEEEcCCcCCH
Confidence 4454 333344 99999999999999865542211 22233566677777777788999999998654
No 224
>PRK05867 short chain dehydrogenase; Provisional
Probab=64.64 E-value=45 Score=27.51 Aligned_cols=45 Identities=9% Similarity=0.018 Sum_probs=26.7
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHH
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSA 103 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~ 103 (196)
.++++|+|+++ .+...+.+.|-+.|. + |.-..|.+++..++.++.
T Consensus 9 ~k~vlVtGas~--gIG~~ia~~l~~~G~--~--V~~~~r~~~~~~~~~~~l 53 (253)
T PRK05867 9 GKRALITGAST--GIGKRVALAYVEAGA--Q--VAIAARHLDALEKLADEI 53 (253)
T ss_pred CCEEEEECCCc--hHHHHHHHHHHHCCC--E--EEEEcCCHHHHHHHHHHH
Confidence 46788888877 456666777766664 2 333345555555544443
No 225
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=64.50 E-value=49 Score=24.86 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=27.4
Q ss_pred HHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchh
Q 029271 70 DAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS 122 (196)
Q Consensus 70 ~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~ 122 (196)
++.+.|+..|++++..+.-- .. -...+++.+++.+++.||.++-.-++|.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~g-~~--~~~~I~~~a~~~~~dlIV~Gs~g~~~l~ 118 (146)
T cd01989 69 PYRCFCSRKGVQCEDVVLED-DD--VAKAIVEYVADHGITKLVMGASSDNHFS 118 (146)
T ss_pred HHHHHHhhcCCeEEEEEEeC-Cc--HHHHHHHHHHHcCCCEEEEeccCCCcee
Confidence 33444455677777665421 12 2344666666777876666655444443
No 226
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=64.43 E-value=25 Score=31.79 Aligned_cols=54 Identities=11% Similarity=0.128 Sum_probs=43.7
Q ss_pred CeEEEEEcCCCC-HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC
Q 029271 53 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 106 (196)
Q Consensus 53 ~~V~IimGS~SD-~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~ 106 (196)
.++.|+.|...+ .-+.+-..+.|+++||.+++.-.+..-+.+++.+.++++.++
T Consensus 34 ~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d 88 (296)
T PRK14188 34 GLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIARLNAD 88 (296)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 366777776654 445666788999999999999999999999999999988655
No 227
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=64.28 E-value=34 Score=28.77 Aligned_cols=47 Identities=19% Similarity=0.173 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEcccC---CchHHHHHHHHHhhCCCeE
Q 029271 64 DLPVMNDAARTLSDFGVPYEIKILPPHQ---NCKEALSYALSAKERGIKI 110 (196)
Q Consensus 64 D~~~~~~~~~~l~~~gi~~ev~V~SaHR---~p~~~~~~~~~~e~~~~~V 110 (196)
+++.+.++.+.+++.|+++.+.+..+.| +++.+.++++.+.+-|++.
T Consensus 113 ~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~ 162 (265)
T cd03174 113 DLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADE 162 (265)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCE
Confidence 6788888999999999999999987885 7788888999998888853
No 228
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=64.07 E-value=35 Score=30.71 Aligned_cols=54 Identities=13% Similarity=0.190 Sum_probs=44.3
Q ss_pred CeEEEEEcCCCCHH-HHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC
Q 029271 53 PIVGIIMESDLDLP-VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 106 (196)
Q Consensus 53 ~~V~IimGS~SD~~-~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~ 106 (196)
..+.|+.|.+.+-. +.+-..+.|+++||.+++.-.+..-+.+++.+.++++.++
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~d 88 (278)
T PRK14172 34 KIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDESISEEDLINEIEELNKD 88 (278)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36777778776655 6666788999999999999999999999999999888654
No 229
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=64.07 E-value=34 Score=31.10 Aligned_cols=54 Identities=11% Similarity=0.115 Sum_probs=44.4
Q ss_pred CeEEEEEcCC-CCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC
Q 029271 53 PIVGIIMESD-LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 106 (196)
Q Consensus 53 ~~V~IimGS~-SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~ 106 (196)
..+.|..|.. ++.-+.+-..+.|+++||.+++.-.+..-+.+++.+.++++.++
T Consensus 34 ~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 88 (297)
T PRK14186 34 GLAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPADTSQAEVEALIAQLNQD 88 (297)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3677777765 45667777888999999999999999999999999999988654
No 230
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=63.94 E-value=24 Score=28.69 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccc
Q 029271 63 LDLPVMNDAARTLSDFGVPYEIKILPPH 90 (196)
Q Consensus 63 SD~~~~~~~~~~l~~~gi~~ev~V~SaH 90 (196)
...|.|.+++.+|+.+||+|+.+=.|.|
T Consensus 14 ~t~~~C~~ak~iL~~~~V~~~e~DVs~~ 41 (147)
T cd03031 14 KTFEDCNNVRAILESFRVKFDERDVSMD 41 (147)
T ss_pred CcChhHHHHHHHHHHCCCcEEEEECCCC
Confidence 4789999999999999999998877766
No 231
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=63.68 E-value=44 Score=22.71 Aligned_cols=68 Identities=15% Similarity=0.144 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCcEEEecCCCC
Q 029271 62 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSE 141 (196)
Q Consensus 62 ~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PVIgvP~~~~ 141 (196)
..+=|.|.+++..|++++++|+..-...+....++.+.+++ +.+..+.|++-+ .+.
T Consensus 7 ~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~----------------------~~g~~~~P~v~~--~g~ 62 (82)
T cd03419 7 KSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQE----------------------LTGQRTVPNVFI--GGK 62 (82)
T ss_pred cCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHH----------------------HhCCCCCCeEEE--CCE
Confidence 47779999999999999999876555565554444444332 224466677532 233
Q ss_pred CCChhh-hhhhhc
Q 029271 142 DWSEDD-VINSIR 153 (196)
Q Consensus 142 ~~~G~D-LlS~lq 153 (196)
.++|.| +..+.+
T Consensus 63 ~igg~~~~~~~~~ 75 (82)
T cd03419 63 FIGGCDDLMALHK 75 (82)
T ss_pred EEcCHHHHHHHHH
Confidence 467777 666655
No 232
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=63.65 E-value=70 Score=26.74 Aligned_cols=80 Identities=13% Similarity=0.109 Sum_probs=45.7
Q ss_pred eEEEEEcC--CCCHH----HHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEec-CCCCchhHhhh
Q 029271 54 IVGIIMES--DLDLP----VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD-GVEAHLSGVAA 126 (196)
Q Consensus 54 ~V~IimGS--~SD~~----~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavA-G~sa~L~gvvA 126 (196)
+|++++.+ ..|-+ ..+.+.+.++++|+. +.+.... .++...++++++...+++-||... ..+..+-..+.
T Consensus 1 ~I~~i~~~~~~~~~~f~~~~~~gi~~~~~~~gy~--~~i~~~~-~~~~~~~~i~~l~~~~vdgiI~~~~~~~~~~~~~~~ 77 (265)
T cd06354 1 KVALVTDVGGLGDKSFNQSAWEGLERAAKELGIE--YKYVESK-SDADYEPNLEQLADAGYDLIVGVGFLLADALKEVAK 77 (265)
T ss_pred CEEEEeCCCCcCchhHHHHHHHHHHHHHHHcCCe--EEEEecC-CHHHHHHHHHHHHhCCCCEEEEcCcchHHHHHHHHH
Confidence 46777743 13444 445666778888875 4444444 466667888888888887666653 22322323333
Q ss_pred hccCCcEEEe
Q 029271 127 ANSQILVIRV 136 (196)
Q Consensus 127 ~~t~~PVIgv 136 (196)
.....|++-+
T Consensus 78 ~~~~~PiV~i 87 (265)
T cd06354 78 QYPDQKFAII 87 (265)
T ss_pred HCCCCEEEEE
Confidence 2224566654
No 233
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=63.34 E-value=53 Score=28.57 Aligned_cols=30 Identities=10% Similarity=0.012 Sum_probs=18.6
Q ss_pred CeEEEEEcCCCCH-HHHHHHHHHHHHhCCCeE
Q 029271 53 PIVGIIMESDLDL-PVMNDAARTLSDFGVPYE 83 (196)
Q Consensus 53 ~~V~IimGS~SD~-~~~~~~~~~l~~~gi~~e 83 (196)
++|.|.+|+ ||. ...+++.+.|.++.-+++
T Consensus 171 ~~iLi~~GG-~d~~~~~~~~l~~l~~~~~~~~ 201 (279)
T TIGR03590 171 RRVLVSFGG-ADPDNLTLKLLSALAESQINIS 201 (279)
T ss_pred CeEEEEeCC-cCCcCHHHHHHHHHhccccCce
Confidence 467777765 554 446677788876554444
No 234
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=62.97 E-value=37 Score=23.21 Aligned_cols=36 Identities=8% Similarity=0.110 Sum_probs=24.7
Q ss_pred EcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHH
Q 029271 59 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEAL 97 (196)
Q Consensus 59 mGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~ 97 (196)
.+..+ =+.|.++++.|++.|++|+.+=. .+.++...
T Consensus 4 y~~~~-Cp~C~~ak~~L~~~~i~~~~~di--~~~~~~~~ 39 (72)
T TIGR02194 4 YSKNN-CVQCKMTKKALEEHGIAFEEINI--DEQPEAID 39 (72)
T ss_pred EeCCC-CHHHHHHHHHHHHCCCceEEEEC--CCCHHHHH
Confidence 34433 38999999999999999876433 34444433
No 235
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.67 E-value=41 Score=30.39 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=43.1
Q ss_pred CeEEEEEcCCCCH-HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC
Q 029271 53 PIVGIIMESDLDL-PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 106 (196)
Q Consensus 53 ~~V~IimGS~SD~-~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~ 106 (196)
..+.|..|...+- -+.+...+.|+++|+.++..-.+..-+.+++.+.++++.++
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d 88 (284)
T PRK14179 34 GLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETISQEELLDLIERYNQD 88 (284)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3677777876654 45555678999999999999888888889999999988654
No 236
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=62.54 E-value=59 Score=23.85 Aligned_cols=72 Identities=21% Similarity=0.240 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhCCCe-EEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhH--------hhhhccCCcEEE
Q 029271 65 LPVMNDAARTLSDFGVPY-EIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG--------VAAANSQILVIR 135 (196)
Q Consensus 65 ~~~~~~~~~~l~~~gi~~-ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~g--------vvA~~t~~PVIg 135 (196)
....+++.+.++..|++. +..+..-.-..+.+.++..+ .+++.+|.++-+-..|.. -+..+++.||+=
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~a~~---~~adliV~G~~g~~~l~~~llGsvs~~v~~~~~~pVlv 149 (154)
T COG0589 73 EELLAEAKALAEAAGVPVVETEVVEGSPSAEEILELAEE---EDADLIVVGSRGRSGLSRLLLGSVAEKVLRHAPCPVLV 149 (154)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEecCCCcHHHHHHHHHH---hCCCEEEECCCCCccccceeeehhHHHHHhcCCCCEEE
Confidence 566778888888999985 55555444444666666554 367888887743333333 234467888888
Q ss_pred ecCC
Q 029271 136 VPLL 139 (196)
Q Consensus 136 vP~~ 139 (196)
||..
T Consensus 150 v~~~ 153 (154)
T COG0589 150 VRSE 153 (154)
T ss_pred EccC
Confidence 7753
No 237
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=62.42 E-value=13 Score=25.01 Aligned_cols=35 Identities=11% Similarity=0.118 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHH
Q 029271 66 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYA 100 (196)
Q Consensus 66 ~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~ 100 (196)
+.+.+++..|++.|++|+..............++.
T Consensus 10 ~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~ 44 (74)
T cd03045 10 PPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFL 44 (74)
T ss_pred CcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHH
Confidence 67889999999999999987776544433333443
No 238
>PRK09864 putative peptidase; Provisional
Probab=62.17 E-value=97 Score=28.73 Aligned_cols=96 Identities=5% Similarity=0.095 Sum_probs=62.2
Q ss_pred EE--cCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCc--E
Q 029271 58 IM--ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQIL--V 133 (196)
Q Consensus 58 im--GS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~P--V 133 (196)
+| |.-.+-...+.+.++.++.||||+..+.+.- .++.- .+ + . +..-.| +
T Consensus 255 ~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q~~~~~~g-gTDa~-~i--~----------------------~-~~~Gvpt~~ 307 (356)
T PRK09864 255 LFDKRYFPNQKLVAALKSCAAHNDLPLQFSTMKTG-ATDGG-RY--N----------------------V-MGGGRPVVA 307 (356)
T ss_pred EccCCccCCHHHHHHHHHHHHHcCCCceEEEcCCC-CchHH-HH--H----------------------H-hCCCCcEEE
Confidence 55 7777777777777777777777776665431 22211 01 0 0 112223 6
Q ss_pred EEecCCCCCCChhhhhhhhcCCCCCeeeEEecCChhhHHHHHHHHHccCCHHHHHHHHHHHh
Q 029271 134 IRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVE 195 (196)
Q Consensus 134 IgvP~~~~~~~G~DLlS~lqmPsGvpvatV~I~~~~nAA~~AaqILa~~d~~l~~kl~~~r~ 195 (196)
|++|+--. ..|+.++.+..-+|+.-+..+++...++.-++.+..||+
T Consensus 308 isiP~RY~---------------Hs~~e~~~~~D~e~~~~Ll~~~~~~l~~~~~~~~~~~~~ 354 (356)
T PRK09864 308 LCLPTRYL---------------HANSGMISKADYDALLTLIRDFLTTLTAEKVNAFSQFRQ 354 (356)
T ss_pred EeeccCcC---------------CCcceEeEHHHHHHHHHHHHHHHHhcchhhHHHHhhhhc
Confidence 77777531 236677888899999999999888777777777887775
No 239
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=62.05 E-value=67 Score=26.14 Aligned_cols=78 Identities=9% Similarity=0.053 Sum_probs=43.7
Q ss_pred CCeEEEEEcCCCCHHH----HHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHh-hCCCeEEEEecCCCC----chh
Q 029271 52 APIVGIIMESDLDLPV----MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK-ERGIKIIIVGDGVEA----HLS 122 (196)
Q Consensus 52 ~~~V~IimGS~SD~~~----~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e-~~~~~V~IavAG~sa----~L~ 122 (196)
.++|+||+-|++-... ..-++..|+++|++...... ..-.++.+.+.++++- .++++++|+-.|.+- ..+
T Consensus 4 ~~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~i-v~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~t~ 82 (163)
T TIGR02667 4 PLRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAI-VKDDIYQIRAQVSAWIADPDVQVILITGGTGFTGRDVTP 82 (163)
T ss_pred ccEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEE-cCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCCcH
Confidence 4688888755532211 22455668899986432211 3455566666665553 246888888766543 345
Q ss_pred HhhhhccC
Q 029271 123 GVAAANSQ 130 (196)
Q Consensus 123 gvvA~~t~ 130 (196)
-+++....
T Consensus 83 eal~~l~~ 90 (163)
T TIGR02667 83 EALEPLFD 90 (163)
T ss_pred HHHHHHHC
Confidence 55544433
No 240
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=62.00 E-value=55 Score=27.29 Aligned_cols=69 Identities=14% Similarity=0.083 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--ccCCcEEEe
Q 029271 66 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NSQILVIRV 136 (196)
Q Consensus 66 ~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~--~t~~PVIgv 136 (196)
...+.+.+.++++|+ ++.+......++...++++++-.++++-+|..+.........+.- ....|||-+
T Consensus 16 ~~~~gi~~~~~~~G~--~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~i~~~~~~~iPvV~~ 86 (272)
T cd06313 16 QGKQAADEAGKLLGV--DVTWYGGALDAVKQVAAIENMASQGWDFIAVDPLGIGTLTEAVQKAIARGIPVIDM 86 (272)
T ss_pred HHHHHHHHHHHHcCC--EEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHhHHHHHHHHHCCCcEEEe
Confidence 345566677778885 566666677888888899988888887666654433333344322 246788875
No 241
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.94 E-value=45 Score=30.23 Aligned_cols=54 Identities=6% Similarity=0.059 Sum_probs=43.3
Q ss_pred CeEEEEEcCCCCHH-HHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC
Q 029271 53 PIVGIIMESDLDLP-VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 106 (196)
Q Consensus 53 ~~V~IimGS~SD~~-~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~ 106 (196)
..+.|..|...+-. +.+...+.|+++||.+++.-.+..-+.+++.+.++++.++
T Consensus 34 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~D 88 (288)
T PRK14171 34 KLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTTIHTNDLISKINELNLD 88 (288)
T ss_pred eEEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 36777777665544 5555788999999999999999999999999999988654
No 242
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.68 E-value=41 Score=30.35 Aligned_cols=54 Identities=17% Similarity=0.188 Sum_probs=43.9
Q ss_pred CeEEEEEcCCCC-HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC
Q 029271 53 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 106 (196)
Q Consensus 53 ~~V~IimGS~SD-~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~ 106 (196)
..+.|+.|...| .-+.+...+.|+++||.+++.-.+...+-+++.+.++++.++
T Consensus 32 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 86 (282)
T PRK14169 32 TLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNHD 86 (282)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 367777776654 456667788899999999999999999999999999988654
No 243
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=61.65 E-value=95 Score=26.68 Aligned_cols=72 Identities=17% Similarity=0.030 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHh-------CCCeEEEEEcccCCchHHHHHHHHHhhC-CCeEEEEecCCCCchhHhhhhccCCcEEEec
Q 029271 66 PVMNDAARTLSDF-------GVPYEIKILPPHQNCKEALSYALSAKER-GIKIIIVGDGVEAHLSGVAAANSQILVIRVP 137 (196)
Q Consensus 66 ~~~~~~~~~l~~~-------gi~~ev~V~SaHR~p~~~~~~~~~~e~~-~~~V~IavAG~sa~L~gvvA~~t~~PVIgvP 137 (196)
+..+-+...+++. |.++++.+..-.-.|++..+.++++.++ ++..+|...+......--+......|+|.+-
T Consensus 18 ~~~~g~~~a~~~~N~~Ggi~G~~i~lv~~D~~~~~~~~~~~~~~li~~~~V~~iig~~~s~~~~~~~~~~~~~ip~v~~~ 97 (341)
T cd06341 18 GARAGADAAAGYANAAGGIAGRPIEYVWCDDQGDPASAAACARDLVEDDKVVAVVGGSSGAGGSALPYLAGAGIPVIGGA 97 (341)
T ss_pred HHHHHHHHHHHHHHhcCCcCCceEEEEEecCCCChhHHHHHHHHHHHhcCceEEEecccccchhHHHHHhhcCCceecCC
Confidence 4444555556665 5578888888888999998888887766 7777777554333222123345667877643
No 244
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=61.62 E-value=1.1e+02 Score=26.53 Aligned_cols=62 Identities=8% Similarity=0.039 Sum_probs=42.9
Q ss_pred CCeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEec
Q 029271 52 APIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 115 (196)
Q Consensus 52 ~~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavA 115 (196)
+..|+++....++ ....+.+.+.++++|. ++-+...+..+++..++++.+.+.+++-||...
T Consensus 59 ~~~Igvi~~~~~~~f~~~l~~gi~~~~~~~gy--~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~ 123 (346)
T PRK10401 59 SDTIGVVVMDVSDAFFGALVKAVDLVAQQHQK--YVLIGNSYHEAEKERHAIEVLIRQRCNALIVHS 123 (346)
T ss_pred CCEEEEEeCCCCCccHHHHHHHHHHHHHHCCC--EEEEEcCCCChHHHHHHHHHHHhcCCCEEEEeC
Confidence 3479999865444 2345566777788885 566666777788888888888877887555543
No 245
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=61.47 E-value=26 Score=34.97 Aligned_cols=57 Identities=11% Similarity=0.102 Sum_probs=37.5
Q ss_pred CeEEEEEcCC--CCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCC
Q 029271 53 PIVGIIMESD--LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 118 (196)
Q Consensus 53 ~~V~IimGS~--SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~s 118 (196)
-+|.++||+- |=.-..+++++.|++.|++.++.=++. .+.... .+.+|+||+-...+
T Consensus 507 mKILvaCGsGiGTStmva~kIkk~Lke~GI~veV~~~~V----sev~s~-----~~~aDIIVtt~~La 565 (602)
T PRK09548 507 VRILAVCGQGQGSSMMMKMKIKKYLDKRGIPIIMDSCAV----NDYKGK-----LETIDIIVCSKHLA 565 (602)
T ss_pred cEEEEECCCCchHHHHHHHHHHHHHHHcCCCeEEEEech----HhCccc-----CCCCCEEEEcccch
Confidence 3799999875 344566799999999999988664443 222111 12358888854443
No 246
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=61.19 E-value=90 Score=25.52 Aligned_cols=59 Identities=14% Similarity=0.164 Sum_probs=40.4
Q ss_pred EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEec
Q 029271 55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 115 (196)
Q Consensus 55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavA 115 (196)
|+++..+.+| ....+.+.+.++++|+.+.+ ...+..++.-.++++.+-.++++.||..+
T Consensus 2 igvi~p~~~~~~~~~~~~g~~~~a~~~g~~~~~--~~~~~~~~~~~~~i~~~~~~~vdgii~~~ 63 (268)
T cd06270 2 IGLVVSDLDGPFFGPLLSGVESVARKAGKHLII--TAGHHSAEKEREAIEFLLERRCDALILHS 63 (268)
T ss_pred EEEEEccccCcchHHHHHHHHHHHHHCCCEEEE--EeCCCchHHHHHHHHHHHHcCCCEEEEec
Confidence 5666655444 24556777888899976654 44455677777888888888898777654
No 247
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=61.14 E-value=36 Score=28.42 Aligned_cols=84 Identities=13% Similarity=0.063 Sum_probs=49.2
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHH-HhCCCeEEEEEccc---CCchHHHHHHHHHhhCCCeEEEEecC-CCCchhHhhhhc
Q 029271 54 IVGIIMESDLDLPVMNDAARTLS-DFGVPYEIKILPPH---QNCKEALSYALSAKERGIKIIIVGDG-VEAHLSGVAAAN 128 (196)
Q Consensus 54 ~V~IimGS~SD~~~~~~~~~~l~-~~gi~~ev~V~SaH---R~p~~~~~~~~~~e~~~~~V~IavAG-~sa~L~gvvA~~ 128 (196)
+|++|++-..=-.....++..|. +.....++.+-++. +.|+.++++.+..+. +++||+--= .+-|.-.+.-.+
T Consensus 2 r~V~vtld~~~~~al~~aa~~l~~~~~p~l~l~~~~~~el~~~~~~~~~~~~aia~--ADii~~smlF~ed~v~~l~~~L 79 (164)
T PF11965_consen 2 RFVIVTLDEHYNSALYRAAARLNRDHCPGLELSVFAAAELERDPEALEECEAAIAR--ADIIFGSMLFIEDHVRPLLPAL 79 (164)
T ss_pred EEEEEeCchhhhHHHHHHHHHHhhccCCCeEEEEEeHHHhhcChHHHHHHHHHHHh--CCEEEeehhhhHHHHHHHHHHH
Confidence 46677765555555555555554 55666777776654 999888888777655 677776211 122322333222
Q ss_pred ----cCCcEEEecCC
Q 029271 129 ----SQILVIRVPLL 139 (196)
Q Consensus 129 ----t~~PVIgvP~~ 139 (196)
...|+.-|-.+
T Consensus 80 ~~~r~~~~a~i~~~s 94 (164)
T PF11965_consen 80 EARRDHCPAMIIFES 94 (164)
T ss_pred HHHHccCCEEEEEcC
Confidence 36676655554
No 248
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=61.01 E-value=42 Score=29.14 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=49.6
Q ss_pred eEEEEEcCCCC-----HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCe-EEEEecCC---CCchhHh
Q 029271 54 IVGIIMESDLD-----LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIK-IIIVGDGV---EAHLSGV 124 (196)
Q Consensus 54 ~V~IimGS~SD-----~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~-V~IavAG~---sa~L~gv 124 (196)
+|+|++|+.|= +..++.+.+.|+++|..+++- -..+. ..+..++. ..++ ||+.+-|. .++++++
T Consensus 2 ~v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~~i--~~~~~---~~~~~~~~--~~~D~v~~~~~g~~ge~~~~~~~ 74 (299)
T PRK14571 2 RVALLMGGVSREREISLRSGERVKKALEKLGYEVTVF--DVDED---FLKKVDQL--KSFDVVFNVLHGTFGEDGTLQAI 74 (299)
T ss_pred eEEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEEEE--ccCch---HHHHhhhc--cCCCEEEEeCCCCCCCccHHHHH
Confidence 69999999884 456778899999999865432 22221 22222221 2354 66665553 6777777
Q ss_pred hhhccCCcEEEecCCC
Q 029271 125 AAANSQILVIRVPLLS 140 (196)
Q Consensus 125 vA~~t~~PVIgvP~~~ 140 (196)
+-. ..+|++|+++.+
T Consensus 75 le~-~gip~~G~~~~a 89 (299)
T PRK14571 75 LDF-LGIRYTGSDAFS 89 (299)
T ss_pred HHH-cCCCccCCCHHH
Confidence 754 568888876654
No 249
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.89 E-value=36 Score=30.74 Aligned_cols=54 Identities=19% Similarity=0.298 Sum_probs=43.8
Q ss_pred CeEEEEEcCC-CCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC
Q 029271 53 PIVGIIMESD-LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 106 (196)
Q Consensus 53 ~~V~IimGS~-SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~ 106 (196)
..+.|+.|.+ ++.-+.+...+.|+++||.+++.-.+..-+.+++.+.++++.++
T Consensus 33 ~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (282)
T PRK14180 33 KLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNND 87 (282)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4677777765 44556667788899999999999999999999999999988654
No 250
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=60.66 E-value=29 Score=35.34 Aligned_cols=86 Identities=17% Similarity=0.135 Sum_probs=54.1
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEE---------------------------------EEEcccCCc--hHHH
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEI---------------------------------KILPPHQNC--KEAL 97 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev---------------------------------~V~SaHR~p--~~~~ 97 (196)
.+|+|++++ -|-|-+.-+...+-.+.+.... .+.+--|.+ +...
T Consensus 390 ~rIaIltsG-G~apGmNaair~vv~~a~~~g~~V~Gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~LgtsR~~~~~~~~ 468 (745)
T TIGR02478 390 LRIAIIHVG-APAGGMNAATRSAVRYAIARGHTVIAIHNGFSGLARGDVRELTWSDVEGWVGEGGSELGTNRELPGKDLG 468 (745)
T ss_pred eEEEEEecC-CCchhHHHHHHHHHHHHHhCCCEEEEEecChhhhccCCeecCCHHHHHHHHhcCCcccccCCCCchhHHH
Confidence 479999866 4778888776544332221111 122233543 5678
Q ss_pred HHHHHHhhCCCeEEEEecCCCCchhH-hhhh------ccCCcEEEecCC
Q 029271 98 SYALSAKERGIKIIIVGDGVEAHLSG-VAAA------NSQILVIRVPLL 139 (196)
Q Consensus 98 ~~~~~~e~~~~~V~IavAG~sa~L~g-vvA~------~t~~PVIgvP~~ 139 (196)
++++.+++.+++.+|.+.|-...-+. .++- ....||||+|-.
T Consensus 469 ~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkT 517 (745)
T TIGR02478 469 MIAYYFQKHKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPAT 517 (745)
T ss_pred HHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEeccc
Confidence 88999999999988888776533322 2222 246999999975
No 251
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=60.64 E-value=90 Score=25.32 Aligned_cols=59 Identities=12% Similarity=0.254 Sum_probs=41.0
Q ss_pred EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEec
Q 029271 55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 115 (196)
Q Consensus 55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavA 115 (196)
|++++-+.++ ....+.+.+.++++|. ++-+...+..+++..++++.....+++-+|...
T Consensus 2 i~~i~~~~~~~~~~~i~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~ 63 (260)
T cd06286 2 IGVVLPYINHPYFSQLVDGIEKAALKHGY--KVVLLQTNYDKEKELEYLELLKTKQVDGLILCS 63 (260)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHcCC--EEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeC
Confidence 5666654433 4556788888888886 445556678888888888888888887555543
No 252
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=60.56 E-value=15 Score=34.13 Aligned_cols=48 Identities=23% Similarity=0.178 Sum_probs=37.6
Q ss_pred CchHHHHHHHHHhhCCCeEEEEecCC-CCchhHhhhhccCCcEEEecCC
Q 029271 92 NCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAAANSQILVIRVPLL 139 (196)
Q Consensus 92 ~p~~~~~~~~~~e~~~~~V~IavAG~-sa~L~gvvA~~t~~PVIgvP~~ 139 (196)
+++-..+.++++++.|++.+|.+.|- |+.=+-.++-.-.+||||+|=.
T Consensus 79 ~~e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~~i~vVGvPkT 127 (347)
T COG0205 79 TEEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEGGIPVVGVPKT 127 (347)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHhcCCcEEecCCC
Confidence 34556678888999999877777664 7777778887888999999964
No 253
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=60.50 E-value=1.1e+02 Score=26.89 Aligned_cols=84 Identities=10% Similarity=0.029 Sum_probs=49.6
Q ss_pred CCeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh-
Q 029271 52 APIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA- 127 (196)
Q Consensus 52 ~~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~- 127 (196)
+..|+++..+.++ ....+.+.+.++++|- +++.+.......+...++++.+..++++-||..+.........+.-
T Consensus 24 ~~~Igvv~~~~~~~f~~~~~~gi~~~a~~~g~-~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~l~~l 102 (330)
T PRK15395 24 DTRIGVTIYKYDDNFMSVVRKAIEKDAKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAPTVIEKA 102 (330)
T ss_pred CceEEEEEecCcchHHHHHHHHHHHHHHhcCC-eEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHH
Confidence 4578888866554 2334456667777762 4555433333555566677777778887666655444444554433
Q ss_pred -ccCCcEEEe
Q 029271 128 -NSQILVIRV 136 (196)
Q Consensus 128 -~t~~PVIgv 136 (196)
.-.+|||-+
T Consensus 103 ~~~giPvV~v 112 (330)
T PRK15395 103 RGQDVPVVFF 112 (330)
T ss_pred HHCCCcEEEE
Confidence 235688766
No 254
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=60.44 E-value=43 Score=30.56 Aligned_cols=54 Identities=9% Similarity=0.049 Sum_probs=46.1
Q ss_pred EEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCC-chHHHHHHHHHhhCCCeEE
Q 029271 58 IMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQN-CKEALSYALSAKERGIKII 111 (196)
Q Consensus 58 imGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~-p~~~~~~~~~~e~~~~~V~ 111 (196)
+.-+.++.+.+.+..+..++.|..+.+.+.-+|+. |+++.++++.+++-|++.|
T Consensus 107 i~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i 161 (337)
T PRK08195 107 VATHCTEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCV 161 (337)
T ss_pred EEEecchHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEE
Confidence 34478889999999999999999999999899987 5788889999998888754
No 255
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=60.39 E-value=6.2 Score=25.14 Aligned_cols=20 Identities=35% Similarity=0.738 Sum_probs=17.1
Q ss_pred HHHHHHccCCHHHHHHHHHH
Q 029271 174 YAVKVLGIADEDLLERIRKY 193 (196)
Q Consensus 174 ~AaqILa~~d~~l~~kl~~~ 193 (196)
.||+.|+++..-|+.||+.|
T Consensus 23 ~aA~~Lgisr~tL~~klkk~ 42 (42)
T PF02954_consen 23 KAARLLGISRRTLYRKLKKY 42 (42)
T ss_dssp HHHHHHTS-HHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHhC
Confidence 57899999999999999876
No 256
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=60.35 E-value=92 Score=25.34 Aligned_cols=77 Identities=12% Similarity=0.195 Sum_probs=46.9
Q ss_pred EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCC
Q 029271 55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI 131 (196)
Q Consensus 55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~ 131 (196)
|+++..+.++ ....+.+.+.++++|..+. +...-..++.-.++++.+...+++.+|.... ...+-- +-....
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~--~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~-~~~~~~--~~~~gi 76 (265)
T cd06291 2 IGLIVPTISNPFFSELARAVEKELYKKGYKLI--LCNSDNDPEKEREYLEMLRQNQVDGIIAGTH-NLGIEE--YENIDL 76 (265)
T ss_pred EEEEECCCCChhHHHHHHHHHHHHHHCCCeEE--EecCCccHHHHHHHHHHHHHcCCCEEEEecC-CcCHHH--HhcCCC
Confidence 6777765443 3445667788889996554 4433345676778888888888876666443 333321 123456
Q ss_pred cEEEe
Q 029271 132 LVIRV 136 (196)
Q Consensus 132 PVIgv 136 (196)
|||.+
T Consensus 77 pvv~~ 81 (265)
T cd06291 77 PIVSF 81 (265)
T ss_pred CEEEE
Confidence 77765
No 257
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=60.30 E-value=89 Score=25.18 Aligned_cols=60 Identities=17% Similarity=0.146 Sum_probs=40.5
Q ss_pred CCCeEEEEEcccCCchHHHHHHHHHhhC-CCeEEEEecCCCCc--hhHhhhhccCCcEEEecCC
Q 029271 79 GVPYEIKILPPHQNCKEALSYALSAKER-GIKIIIVGDGVEAH--LSGVAAANSQILVIRVPLL 139 (196)
Q Consensus 79 gi~~ev~V~SaHR~p~~~~~~~~~~e~~-~~~V~IavAG~sa~--L~gvvA~~t~~PVIgvP~~ 139 (196)
|.++++.+....-.+++..+.++++..+ ++.+||........ +.. ++.....|+|..-..
T Consensus 38 g~~~~~~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~~~~~~~~~~-~~~~~~iP~i~~~~~ 100 (299)
T cd04509 38 GRKLELVIYDDQSDPARALAAARRLCQQEGVDALVGPVSSGVALAVAP-VAEALKIPLISPGAT 100 (299)
T ss_pred CcEEEEEEecCCCCHHHHHHHHHHHhcccCceEEEcCCCcHHHHHHHH-HHhhCCceEEeccCC
Confidence 5667888888877888888888888776 78877765443222 222 234467899986543
No 258
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=60.22 E-value=1.2e+02 Score=28.16 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=12.1
Q ss_pred hHHHHHHHHHcc-CCHHHHHHHH
Q 029271 170 NAALYAVKVLGI-ADEDLLERIR 191 (196)
Q Consensus 170 nAA~~AaqILa~-~d~~l~~kl~ 191 (196)
+..-+|..|..+ .|+..|+++.
T Consensus 428 d~~~la~ai~~ll~~~~~~~~~~ 450 (475)
T cd03813 428 DPEALARAILRLLKDPELRRAMG 450 (475)
T ss_pred CHHHHHHHHHHHhcCHHHHHHHH
Confidence 344444444443 6777777764
No 259
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=60.22 E-value=95 Score=25.45 Aligned_cols=66 Identities=11% Similarity=-0.045 Sum_probs=37.2
Q ss_pred CCCeEEEEEcCCC---CHHHHHHHHHHHHHhC-CCeEEEEEcccCCchHHHHHHHHHhhC--CCeEEEEecCC
Q 029271 51 DAPIVGIIMESDL---DLPVMNDAARTLSDFG-VPYEIKILPPHQNCKEALSYALSAKER--GIKIIIVGDGV 117 (196)
Q Consensus 51 ~~~~V~IimGS~S---D~~~~~~~~~~l~~~g-i~~ev~V~SaHR~p~~~~~~~~~~e~~--~~~V~IavAG~ 117 (196)
...+++++.|... .....+..++.+++.| ++....+ ......+...+.++++-.. ..+.|++....
T Consensus 124 g~~~i~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~ 195 (272)
T cd06300 124 GKGNVLVVRGLAGHPVDEDRYAGAKEVLKEYPGIKIVGEV-YGDWDQAVAQKAVADFLASNPDVDGIWTQGGD 195 (272)
T ss_pred CCceEEEEECCCCCcchHHHHHHHHHHHHHCCCcEEEeec-CCCCCHHHHHHHHHHHHHhCCCcCEEEecCCC
Confidence 3457999987532 2345566777888887 7654322 2233445555555555333 24666666554
No 260
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.20 E-value=40 Score=30.45 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=43.7
Q ss_pred eEEEEEcCC-CCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC
Q 029271 54 IVGIIMESD-LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 106 (196)
Q Consensus 54 ~V~IimGS~-SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~ 106 (196)
.+.|..|.. ++.-+.+...+.|+++||.+++.-.+...+.+++.+.++++.++
T Consensus 34 LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (285)
T PRK14191 34 LAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLIKDLNTD 87 (285)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 566666654 55667778888999999999999999999999999999988654
No 261
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=60.11 E-value=19 Score=24.02 Aligned_cols=28 Identities=25% Similarity=0.201 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccc
Q 029271 63 LDLPVMNDAARTLSDFGVPYEIKILPPH 90 (196)
Q Consensus 63 SD~~~~~~~~~~l~~~gi~~ev~V~SaH 90 (196)
..-+.+++++..|++.|++|+.+.....
T Consensus 7 ~~~~~~~~v~~~l~~~gi~~~~~~v~~~ 34 (73)
T cd03059 7 PDDVYSHRVRIVLAEKGVSVEIIDVDPD 34 (73)
T ss_pred CCChhHHHHHHHHHHcCCccEEEEcCCC
Confidence 3457899999999999999998765543
No 262
>PRK15005 universal stress protein F; Provisional
Probab=59.94 E-value=52 Score=24.58 Aligned_cols=60 Identities=15% Similarity=0.182 Sum_probs=32.6
Q ss_pred HHHHHhCCC---eEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--------ccCCcEEEec
Q 029271 73 RTLSDFGVP---YEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--------NSQILVIRVP 137 (196)
Q Consensus 73 ~~l~~~gi~---~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~--------~t~~PVIgvP 137 (196)
+.++.++.+ ++..+. +-.|. ..+++..++.+++.||.++.+. ++...+-| +++.||.-||
T Consensus 74 ~~~~~~~~~~~~~~~~v~--~G~p~--~~I~~~a~~~~~DLIV~Gs~~~-~~~~~llGS~a~~vl~~a~cpVlvVr 144 (144)
T PRK15005 74 EIIKKFKLPTDRVHVHVE--EGSPK--DRILELAKKIPADMIIIASHRP-DITTYLLGSNAAAVVRHAECSVLVVR 144 (144)
T ss_pred HHHHHhCCCCCceEEEEe--CCCHH--HHHHHHHHHcCCCEEEEeCCCC-CchheeecchHHHHHHhCCCCEEEeC
Confidence 334455543 444443 44443 4566666777888888876643 34433222 4566776553
No 263
>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase. Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A ....
Probab=59.80 E-value=25 Score=28.51 Aligned_cols=82 Identities=16% Similarity=0.228 Sum_probs=49.6
Q ss_pred EEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEccc----CCchH----------HHHHHHHHhhCCCeEEE-EecCCCC
Q 029271 55 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPH----QNCKE----------ALSYALSAKERGIKIII-VGDGVEA 119 (196)
Q Consensus 55 V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaH----R~p~~----------~~~~~~~~e~~~~~V~I-avAG~sa 119 (196)
++++ +..++..+.+++.+.+....-+ ++.+.+.. ++.+. +.+.++..+..|+++|+ ++...+.
T Consensus 1 Ig~i-~p~~~~~~~~~l~~~~~~~~~~-~v~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~g~d~i~i~C~s~~~ 78 (216)
T PF01177_consen 1 IGVI-SPNSNLTVERELRRMLPAREGQ-EVYFHDTRGFPDRIKEEDAGMSAILDRLIEAAEKLEKAGVDAIVIACNSAHP 78 (216)
T ss_dssp EEEE-SSSTTHHHHHHHHHHSTTSCCT-EEEEEETTTSCTSHHHHHHHHHHHHHHHHHHHHHHHHTTESEEEESSHHHHH
T ss_pred CEEE-EchHHHHHHHHHHHHhccccCC-EEEEEeCCCCCCccHHHhcchHHHHHHHHHHHHHHHhCCCCEEEEcCCchhh
Confidence 4555 8889999999999888765544 55555555 22233 23334566677886444 4332223
Q ss_pred chhHhhhhccCCcEEEecC
Q 029271 120 HLSGVAAANSQILVIRVPL 138 (196)
Q Consensus 120 ~L~gvvA~~t~~PVIgvP~ 138 (196)
.+...-...+..||++.+-
T Consensus 79 ~~~~~~~~~~~iPv~~~~~ 97 (216)
T PF01177_consen 79 FVDELRKERVGIPVVGIVE 97 (216)
T ss_dssp HHHHHHHHHHSSEEEESHH
T ss_pred hHHHHhhhcCceEEEeccH
Confidence 3444433567999999443
No 264
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=59.74 E-value=52 Score=29.82 Aligned_cols=54 Identities=19% Similarity=0.219 Sum_probs=44.5
Q ss_pred CeEEEEEcCC-CCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC
Q 029271 53 PIVGIIMESD-LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 106 (196)
Q Consensus 53 ~~V~IimGS~-SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~ 106 (196)
..+.|+.|.. ++.-+.+...+.|+++|+.+++...+..-+.+++.+.++++.++
T Consensus 40 ~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~D 94 (287)
T PRK14176 40 GLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPADTTQEELLELIDSLNKR 94 (287)
T ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3666777754 55667778888999999999999999999999999999988654
No 265
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=59.62 E-value=26 Score=29.88 Aligned_cols=73 Identities=15% Similarity=0.120 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCC-CCchhHhhh--------hccCCcEEEecC
Q 029271 68 MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAA--------ANSQILVIRVPL 138 (196)
Q Consensus 68 ~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~-sa~L~gvvA--------~~t~~PVIgvP~ 138 (196)
.+++.+.-+..|.+.|+. =+||+.++..++.+.+++.|++.+.+...- +..+||.=+ |.-.--|+=||.
T Consensus 20 p~eiveLa~~~~A~iEVN--LFyRT~eR~~~I~~~L~~~Ga~~vlG~~~d~~~~ip~L~~~R~~v~~~GIy~ADVVLVPL 97 (178)
T PF02006_consen 20 PEEIVELAKATGAKIEVN--LFYRTEERVEKIAELLREHGAEEVLGVNPDASERIPGLDHERAKVSKEGIYSADVVLVPL 97 (178)
T ss_pred hHHHHHHHHHhCCCEEEE--cccCCHHHHHHHHHHHHHcCCCEeeccCCcccccCCCCCCccceECcccceeccEEEecc
Confidence 456777778888876655 489999999999999999999765554222 345666533 234456888999
Q ss_pred CCCC
Q 029271 139 LSED 142 (196)
Q Consensus 139 ~~~~ 142 (196)
.-++
T Consensus 98 EDGD 101 (178)
T PF02006_consen 98 EDGD 101 (178)
T ss_pred CCCc
Confidence 7654
No 266
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=59.57 E-value=70 Score=29.06 Aligned_cols=55 Identities=24% Similarity=0.179 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHH-HhC-----CCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCC
Q 029271 62 DLDLPVMNDAARTLS-DFG-----VPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 117 (196)
Q Consensus 62 ~SD~~~~~~~~~~l~-~~g-----i~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~ 117 (196)
..|.+.++++.+.++ ..+ +|.-+++. ..-+.+++.++++.+++.|++-|++..+.
T Consensus 188 ~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKls-p~~~~~~~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 188 LQYGEALDELLAALKEAQAELHGYVPLLVKIA-PDLSDEELDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred ccCHHHHHHHHHHHHHHHhccccCCceEEEeC-CCCCHHHHHHHHHHHHHhCCcEEEEeCCc
Confidence 456666667666665 456 88888888 56666688999999988899877776554
No 267
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=59.42 E-value=73 Score=23.90 Aligned_cols=63 Identities=25% Similarity=0.203 Sum_probs=43.3
Q ss_pred EEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCcEEEecCCCCCCChhh-hhhhh
Q 029271 84 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDD-VINSI 152 (196)
Q Consensus 84 v~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PVIgvP~~~~~~~G~D-LlS~l 152 (196)
+=+.|-.....++.+.++.+.++|++++. +.+.+ .|+.+.... ..|+|-||-... |.- +|+++
T Consensus 47 ~I~iS~SG~t~e~i~~~~~a~~~g~~iI~-IT~~~-~l~~~~~~~-~~~~~~~p~~~~---~r~s~~~~~ 110 (119)
T cd05017 47 VIAVSYSGNTEETLSAVEQAKERGAKIVA-ITSGG-KLLEMAREH-GVPVIIIPKGLQ---PRAAFPYLF 110 (119)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEEE-EeCCc-hHHHHHHHc-CCcEEECCCCCC---CceeHHHHH
Confidence 45677888888999999999999986543 33333 477765444 789998886543 333 66655
No 268
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=59.38 E-value=69 Score=28.02 Aligned_cols=49 Identities=22% Similarity=0.266 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHH-HhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEe
Q 029271 63 LDLPVMNDAARTLS-DFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 114 (196)
Q Consensus 63 SD~~~~~~~~~~l~-~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~Iav 114 (196)
.|.+...++.+.++ ..++|.-+++.. +.+++.++++.+++.|++.|++.
T Consensus 140 ~~~~~~~eiv~~vr~~~~~pv~vKi~~---~~~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 140 QDPELSADVVKAVKDKTDVPVFAKLSP---NVTDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEECCC---ChhhHHHHHHHHHHcCCCEEEEE
Confidence 36677777777776 458888888752 44677888888888888877654
No 269
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=59.14 E-value=16 Score=33.01 Aligned_cols=50 Identities=10% Similarity=0.078 Sum_probs=35.2
Q ss_pred EEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCcEEEecCC
Q 029271 84 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 139 (196)
Q Consensus 84 v~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PVIgvP~~ 139 (196)
..|+..|..+..+.++.++ ++++|+++|..+-+.+=.--.-.. ||-|=+.
T Consensus 184 atVt~chs~T~~l~~~~~~-----ADIvIsAvGk~~~i~~~~ik~gav-VIDvGin 233 (284)
T PRK14177 184 ATVTLCHSKTQNLPSIVRQ-----ADIIVGAVGKPEFIKADWISEGAV-LLDAGYN 233 (284)
T ss_pred CEEEEeCCCCCCHHHHHhh-----CCEEEEeCCCcCccCHHHcCCCCE-EEEecCc
Confidence 4677789777778777653 699999999998876543333222 7777764
No 270
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.91 E-value=40 Score=30.64 Aligned_cols=53 Identities=11% Similarity=0.131 Sum_probs=43.0
Q ss_pred eEEEEEcCC-CCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC
Q 029271 54 IVGIIMESD-LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 106 (196)
Q Consensus 54 ~V~IimGS~-SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~ 106 (196)
.+.|..|.. ++.-+.+...+.|+++||.+++...+..-+.+++.+.++++.++
T Consensus 34 LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (297)
T PRK14167 34 LATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNAD 87 (297)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 566666654 45566777888999999999999999999999999999988654
No 271
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.88 E-value=47 Score=30.03 Aligned_cols=54 Identities=11% Similarity=0.079 Sum_probs=44.0
Q ss_pred CeEEEEEcCC-CCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC
Q 029271 53 PIVGIIMESD-LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 106 (196)
Q Consensus 53 ~~V~IimGS~-SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~ 106 (196)
..+.|..|.. ++.-+.+...+.|+++||.|++.-.+..-+.+++.+.++++.++
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d 88 (285)
T PRK14189 34 GLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNRD 88 (285)
T ss_pred eEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3566667755 45566777888999999999999999999999999999988654
No 272
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.78 E-value=44 Score=30.33 Aligned_cols=54 Identities=15% Similarity=0.187 Sum_probs=44.4
Q ss_pred CeEEEEEcCCCC-HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC
Q 029271 53 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 106 (196)
Q Consensus 53 ~~V~IimGS~SD-~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~ 106 (196)
..+.|..|...| .-+.+...+.|+++||.+++.-.+.-.+.+++.+.++++.++
T Consensus 33 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (295)
T PRK14174 33 GLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNND 87 (295)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 477888886654 556677788899999999999998888999999999988654
No 273
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=58.75 E-value=67 Score=25.80 Aligned_cols=83 Identities=13% Similarity=0.083 Sum_probs=47.2
Q ss_pred eEEEEEcCCCC----HHHHHHHHHHHH-HhCCCeEEEEEcccC-------------CchHHHHHHHHHhhCCCeEEEEec
Q 029271 54 IVGIIMESDLD----LPVMNDAARTLS-DFGVPYEIKILPPHQ-------------NCKEALSYALSAKERGIKIIIVGD 115 (196)
Q Consensus 54 ~V~IimGS~SD----~~~~~~~~~~l~-~~gi~~ev~V~SaHR-------------~p~~~~~~~~~~e~~~~~V~IavA 115 (196)
+|.+|.||.+. ...++.+.+.+. ..|..++ +...+. .|+.+.++.+..+. ++.||-+.
T Consensus 1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~g~ev~--~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--AD~iIi~t 76 (174)
T TIGR03566 1 KVVGVSGSLTRPSRTLALVEALVAELAARLGISPR--TIDLADLAPSLGGALWRSQLPPDAERILQAIES--ADLLVVGS 76 (174)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEE--EEEhhhcChhhccccccCCCCHHHHHHHHHHHH--CCEEEEEC
Confidence 58899999976 445556666554 4565443 222221 46777888887766 55555443
Q ss_pred C-CCCchhHh----h-----hhccCCcEEEecCCC
Q 029271 116 G-VEAHLSGV----A-----AANSQILVIRVPLLS 140 (196)
Q Consensus 116 G-~sa~L~gv----v-----A~~t~~PVIgvP~~~ 140 (196)
= -....||. + .....+||+-+-+.+
T Consensus 77 P~Y~~s~~~~LKn~lD~~~~~~l~~K~~~~v~~~g 111 (174)
T TIGR03566 77 PVYRGSYTGLFKHLFDLVDPNALIGKPVLLAATGG 111 (174)
T ss_pred CcCcCcCcHHHHHHHHhcCHhHhCCCEEEEEEecC
Confidence 2 23333332 2 235578887665543
No 274
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=58.69 E-value=83 Score=26.81 Aligned_cols=126 Identities=13% Similarity=0.133 Sum_probs=63.2
Q ss_pred ccccCCCCeEEEEEcCCCC----HHHHHHHHHHHHHhCCCeEE-EEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc
Q 029271 46 LLLAADAPIVGIIMESDLD----LPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH 120 (196)
Q Consensus 46 ~~~~~~~~~V~IimGS~SD----~~~~~~~~~~l~~~gi~~ev-~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~ 120 (196)
++......+++++.|...+ ....+.-.+.|++.|++++- .+....-..+...+.++++...+.+.|++.... -+
T Consensus 170 ~L~~~G~~~I~~i~g~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~p~ai~~~~d~-~A 248 (329)
T TIGR01481 170 ELIAKGHKSIAFVGGPLSDSINGEDRLEGYKEALNKAGIQFGEDLVCEGKYSYDAGYKAFAELKGSLPTAVFVASDE-MA 248 (329)
T ss_pred HHHHCCCCeEEEEecCcccccchHHHHHHHHHHHHHcCCCCCcceEEecCCChHHHHHHHHHHhCCCCCEEEEcCcH-HH
Confidence 3333334589999886543 23445566788899987643 233333344555555555544456787774332 11
Q ss_pred hhHhhhhccCCcEEEecCCCCCCChhh-h-hhhhcCCCCCeeeEEecCChhhHHHHHHHHH
Q 029271 121 LSGVAAANSQILVIRVPLLSEDWSEDD-V-INSIRMPSHVQVASVPRNNAKNAALYAVKVL 179 (196)
Q Consensus 121 L~gvvA~~t~~PVIgvP~~~~~~~G~D-L-lS~lqmPsGvpvatV~I~~~~nAA~~AaqIL 179 (196)
-|++.+....- +.+|-.- ..-|+| . ++.+.-| +.+||..+ .+.-|..|+++|
T Consensus 249 -~g~~~al~~~g-~~vP~dv-svvgfd~~~~~~~~~p---~lttv~~~-~~~~g~~Av~~L 302 (329)
T TIGR01481 249 -AGILNAAMDAG-IKVPEDL-EVITSNNTRLTEMVRP---QLSTIIQP-LYDIGAVAMRLL 302 (329)
T ss_pred -HHHHHHHHHcC-CCCCCce-EEEeeCCchHHhhcCC---CCcEEecC-HHHHHHHHHHHH
Confidence 25555554432 1233221 234455 2 2322223 35888544 334444444443
No 275
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=58.60 E-value=1e+02 Score=25.43 Aligned_cols=69 Identities=20% Similarity=0.136 Sum_probs=42.3
Q ss_pred CCeEEEE-EcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhh
Q 029271 52 APIVGII-MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA 125 (196)
Q Consensus 52 ~~~V~Ii-mGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvv 125 (196)
.++|++| ++|..+.+..++..+.++++|+........-.-..++..+.+.+ +++|+...|-...+--.+
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~-----ad~I~~~GG~~~~~~~~l 98 (210)
T cd03129 29 GARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLE-----ADGIFVGGGNQLRLLSVL 98 (210)
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhh-----CCEEEEcCCcHHHHHHHH
Confidence 4567776 57766778899999999999987443222111233444444442 566666557665555554
No 276
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.49 E-value=48 Score=29.98 Aligned_cols=54 Identities=13% Similarity=0.212 Sum_probs=44.3
Q ss_pred CeEEEEEcCCCC-HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC
Q 029271 53 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 106 (196)
Q Consensus 53 ~~V~IimGS~SD-~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~ 106 (196)
..+.|+.|...+ .-+.+...+.|+++|+.+++...+..-+.+++.+.++++.++
T Consensus 31 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 85 (287)
T PRK14173 31 HLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELLELIARLNAD 85 (287)
T ss_pred cEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467777787655 456677788899999999999999988899999999988654
No 277
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.44 E-value=35 Score=30.87 Aligned_cols=54 Identities=19% Similarity=0.192 Sum_probs=43.9
Q ss_pred CeEEEEEcCCCC-HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC
Q 029271 53 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 106 (196)
Q Consensus 53 ~~V~IimGS~SD-~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~ 106 (196)
..+.|+.|...+ .-+.+...+.|+++||.+++.-.+.+-+.+++.+.++++.++
T Consensus 33 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d 87 (286)
T PRK14184 33 GLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDLIAELNAR 87 (286)
T ss_pred EEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 367777776654 556666788999999999999999999999999999988654
No 278
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=58.42 E-value=71 Score=23.43 Aligned_cols=82 Identities=26% Similarity=0.210 Sum_probs=58.7
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhCCCeE---------------------EEEEcccCCchHHHHHHHHHhhCCCeEEE
Q 029271 54 IVGIIMESDLDLPVMNDAARTLSDFGVPYE---------------------IKILPPHQNCKEALSYALSAKERGIKIII 112 (196)
Q Consensus 54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~e---------------------v~V~SaHR~p~~~~~~~~~~e~~~~~V~I 112 (196)
+=.++.|.-+....++.+...|.++|..+. +-+.|......++.+.++.+.++|++| |
T Consensus 6 ~~i~i~G~G~s~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~is~sg~~~~~~~~~~~ak~~g~~v-i 84 (131)
T PF01380_consen 6 KRIYIYGSGSSYGVAQYAALKLQKLGRIVVISYEAGEFFHGPLENLDPDDLVIIISYSGETRELIELLRFAKERGAPV-I 84 (131)
T ss_dssp SEEEEEESTHHHHHHHHHHHHHHHHHSSEEEEEEHHHHHTTGGGGCSTTEEEEEEESSSTTHHHHHHHHHHHHTTSEE-E
T ss_pred CEEEEEEcchHHHHHHHHHHHHHHhcCcceeccchHHHhhhhcccccccceeEeeeccccchhhhhhhHHHHhcCCeE-E
Confidence 356778888999999999999988776321 567788888999999999888999877 4
Q ss_pred EecC-CCCchhHhhhhccCCcEEEecCCCC
Q 029271 113 VGDG-VEAHLSGVAAANSQILVIRVPLLSE 141 (196)
Q Consensus 113 avAG-~sa~L~gvvA~~t~~PVIgvP~~~~ 141 (196)
++.+ ..+- ++..++. +|-+|....
T Consensus 85 ~iT~~~~~~----l~~~ad~-~l~~~~~~~ 109 (131)
T PF01380_consen 85 LITSNSESP----LARLADI-VLYIPTGEE 109 (131)
T ss_dssp EEESSTTSH----HHHHSSE-EEEEESSCG
T ss_pred EEeCCCCCc----hhhhCCE-EEEecCCCc
Confidence 4443 3333 3344444 677776553
No 279
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=58.26 E-value=65 Score=25.57 Aligned_cols=57 Identities=19% Similarity=0.154 Sum_probs=35.7
Q ss_pred EEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEE
Q 029271 55 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 113 (196)
Q Consensus 55 V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~Ia 113 (196)
|=|+.| .|.+..+++...|+.+|++..+=--.+..+.--++++.+...+.++-||+.
T Consensus 2 VFIvhg--~~~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~ 58 (125)
T PF10137_consen 2 VFIVHG--RDLAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLF 58 (125)
T ss_pred EEEEeC--CCHHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEE
Confidence 445555 888999999999999999766544444444444444544444434444443
No 280
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=58.22 E-value=66 Score=30.49 Aligned_cols=84 Identities=15% Similarity=0.061 Sum_probs=52.5
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhC-CCeEEEEEcccCCchHHHHHHHHH-----------------------------
Q 029271 54 IVGIIMESDLDLPVMNDAARTLSDFG-VPYEIKILPPHQNCKEALSYALSA----------------------------- 103 (196)
Q Consensus 54 ~V~IimGS~SD~~~~~~~~~~l~~~g-i~~ev~V~SaHR~p~~~~~~~~~~----------------------------- 103 (196)
+|.+|.|-.-|+-.+......|++.+ +++-+-+++-||..+-...+.+.+
T Consensus 5 Kv~~I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~~i~~~ 84 (383)
T COG0381 5 KVLTIFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGNIIEGL 84 (383)
T ss_pred EEEEEEecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHHHHHHH
Confidence 56666666666666666666666655 666666666666544333333332
Q ss_pred ----hhCCCeEEEEecCCCCchhHhhh-hccCCcEEEec
Q 029271 104 ----KERGIKIIIVGDGVEAHLSGVAA-ANSQILVIRVP 137 (196)
Q Consensus 104 ----e~~~~~V~IavAG~sa~L~gvvA-~~t~~PVIgvP 137 (196)
++...+++++-.=....|++.+| .....||-++=
T Consensus 85 ~~vl~~~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvE 123 (383)
T COG0381 85 SKVLEEEKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVE 123 (383)
T ss_pred HHHHHhhCCCEEEEeCCcchHHHHHHHHHHhCCceEEEe
Confidence 22334677777777888885554 46889998864
No 281
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=58.06 E-value=49 Score=25.04 Aligned_cols=59 Identities=10% Similarity=0.147 Sum_probs=40.0
Q ss_pred eEEEEEcCCC--CHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhh
Q 029271 54 IVGIIMESDL--DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA 125 (196)
Q Consensus 54 ~V~IimGS~S--D~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvv 125 (196)
+|..+||+-- =+-+-.++.+.|+++|+++++-+++.--.+... +++++||+ +.+|+.-+
T Consensus 3 KIL~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~~~v~~~~~~~---------~~aDiiv~----s~~l~~~~ 63 (93)
T COG3414 3 KILAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQCAVDEIKALT---------DGADIIVT----STKLADEF 63 (93)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHcCCCceeeeEEecccccCC---------CcccEEEE----ehHhhhhc
Confidence 5777777643 344557899999999999888877652222222 46799998 55665544
No 282
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=58.00 E-value=1e+02 Score=25.05 Aligned_cols=66 Identities=9% Similarity=0.111 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHH-HhhCCCeEEEEecCCCCchhHhhh--hccCCcEEEe
Q 029271 66 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALS-AKERGIKIIIVGDGVEAHLSGVAA--ANSQILVIRV 136 (196)
Q Consensus 66 ~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~-~e~~~~~V~IavAG~sa~L~gvvA--~~t~~PVIgv 136 (196)
...+.+.+.++++|+.+ .+..... +++..+.+.+ ..+.+++.+|..+...+ ...+. .....||+.+
T Consensus 21 ~~~~~~~~~~~~~g~~~--~~~~~~~-~~~~~~~~~~~~~~~~~dgiii~~~~~~--~~~~~~~~~~~ipvV~~ 89 (270)
T cd06294 21 EVLRGISAVANENGYDI--SLATGKN-EEELLEEVKKMIQQKRVDGFILLYSRED--DPIIDYLKEEKFPFVVI 89 (270)
T ss_pred HHHHHHHHHHHHCCCEE--EEecCCC-cHHHHHHHHHHHHHcCcCEEEEecCcCC--cHHHHHHHhcCCCEEEE
Confidence 45677888888998654 4554443 4443343333 44555776666554332 22332 2345788866
No 283
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=57.80 E-value=31 Score=25.18 Aligned_cols=61 Identities=11% Similarity=0.027 Sum_probs=41.8
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCC
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 117 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~ 117 (196)
++.++++=-+-.......+..+|+++|++..+-|++-+ .++-.+.++++.++| .=|+.=|.
T Consensus 5 ~~~v~ltfDdg~~~~~~~~~~~l~~~~i~at~fv~~~~--~~~~~~~l~~l~~~G--~ei~~H~~ 65 (123)
T PF01522_consen 5 KKSVALTFDDGYRDNYDRLLPLLKKYGIPATFFVIGSW--VERYPDQLRELAAAG--HEIGNHGW 65 (123)
T ss_dssp SSEEEEEEESHCHTHHHHHHHHHHHTT--EEEEE-HHH--HHHHHHHHHHHHHTT---EEEEE-S
T ss_pred CCEEEEEEecCchhhHHHHHHHHHhcccceeeeecccc--cccccccchhHHHHH--HHHHhcCC
Confidence 34555665555578889999999999999999999875 666677888888888 44455453
No 284
>PHA03050 glutaredoxin; Provisional
Probab=57.64 E-value=51 Score=25.14 Aligned_cols=74 Identities=16% Similarity=0.185 Sum_probs=45.1
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCC---CeEEEEEcc-cCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhc
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGV---PYEIKILPP-HQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN 128 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi---~~ev~V~Sa-HR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~ 128 (196)
++|.|.+ .+.=|+|.++++.|+++|+ +|++.=... +..+ ++.+.+. + ++|.
T Consensus 13 ~~V~vys--~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~-~~~~~l~---~-------------------~tG~ 67 (108)
T PHA03050 13 NKVTIFV--KFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPEN-ELRDYFE---Q-------------------ITGG 67 (108)
T ss_pred CCEEEEE--CCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCH-HHHHHHH---H-------------------HcCC
Confidence 3566665 4568999999999999999 565433332 2222 2333222 2 1356
Q ss_pred cCCcEEEecCCCCCCChhh-hhhhhc
Q 029271 129 SQILVIRVPLLSEDWSEDD-VINSIR 153 (196)
Q Consensus 129 t~~PVIgvP~~~~~~~G~D-LlS~lq 153 (196)
++.|.|-+- +...+|.| |...-+
T Consensus 68 ~tVP~IfI~--g~~iGG~ddl~~l~~ 91 (108)
T PHA03050 68 RTVPRIFFG--KTSIGGYSDLLEIDN 91 (108)
T ss_pred CCcCEEEEC--CEEEeChHHHHHHHH
Confidence 778888544 33467777 776554
No 285
>PRK10222 PTS system L-ascorbate-specific transporter subunit IIB; Provisional
Probab=57.43 E-value=40 Score=24.76 Aligned_cols=42 Identities=14% Similarity=0.178 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC--CCeEEEEecCCCCch
Q 029271 69 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER--GIKIIIVGDGVEAHL 121 (196)
Q Consensus 69 ~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~--~~~V~IavAG~sa~L 121 (196)
.++.+.|++.|+++++.=++. .++.+. ++++||+.+-....+
T Consensus 5 mkIk~~L~e~Gi~~~ve~~di-----------ss~~~~~~~aDiiVtt~~l~~~~ 48 (85)
T PRK10222 5 MKVDQFLTQSNIDHTVNSCAV-----------GEYKSELSGADIIIASTHIAGEI 48 (85)
T ss_pred HHHHHHHHHcCCCeEEEEeeh-----------hhcccCCCCCCEEEECccchhhh
Confidence 478899999999988754433 222333 568999865544443
No 286
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=57.04 E-value=14 Score=33.80 Aligned_cols=47 Identities=19% Similarity=0.152 Sum_probs=28.8
Q ss_pred chHHHHHHHHHhhCCCeEEEEecCCCCchhH-hhh-----hccCCcEEEecCC
Q 029271 93 CKEALSYALSAKERGIKIIIVGDGVEAHLSG-VAA-----ANSQILVIRVPLL 139 (196)
Q Consensus 93 p~~~~~~~~~~e~~~~~V~IavAG~sa~L~g-vvA-----~~t~~PVIgvP~~ 139 (196)
++...++++++++.+++.+|.+.|-...-+. .++ -+...||||+|-.
T Consensus 78 ~~~~~~~~~~l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkT 130 (338)
T cd00363 78 EEGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGT 130 (338)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeec
Confidence 3456667777777777767766665333222 121 2347999999964
No 287
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=56.93 E-value=23 Score=24.94 Aligned_cols=44 Identities=25% Similarity=0.291 Sum_probs=27.2
Q ss_pred hCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhh
Q 029271 78 FGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA 125 (196)
Q Consensus 78 ~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvv 125 (196)
.|+++...+.. ..+ ...+.+..+..+++++|.++...+.+....
T Consensus 68 ~~~~~~~~~~~--~~~--~~~i~~~~~~~~~dlvvig~~~~~~~~~~~ 111 (130)
T cd00293 68 AGVKVETVVLE--GDP--AEAILEAAEELGADLIVMGSRGRSGLRRLL 111 (130)
T ss_pred CCCceEEEEec--CCC--HHHHHHHHHHcCCCEEEEcCCCCCccceee
Confidence 47766655543 222 455566666777888888887777664433
No 288
>PRK09982 universal stress protein UspD; Provisional
Probab=56.70 E-value=26 Score=26.88 Aligned_cols=44 Identities=7% Similarity=0.178 Sum_probs=31.5
Q ss_pred HHHHHHHHhhCCCeEEEEecCCCCchhHhh------hhccCCcEEEecCCC
Q 029271 96 ALSYALSAKERGIKIIIVGDGVEAHLSGVA------AANSQILVIRVPLLS 140 (196)
Q Consensus 96 ~~~~~~~~e~~~~~V~IavAG~sa~L~gvv------A~~t~~PVIgvP~~~ 140 (196)
...+++.+++.+++.||.+.++ +++..++ .-++..||.-||+.+
T Consensus 92 ~~~I~~~A~~~~aDLIVmG~~~-~~~~~~~~va~~V~~~s~~pVLvv~~~~ 141 (142)
T PRK09982 92 PETLLEIMQKEQCDLLVCGHHH-SFINRLMPAYRGMINKMSADLLIVPFID 141 (142)
T ss_pred HHHHHHHHHHcCCCEEEEeCCh-hHHHHHHHHHHHHHhcCCCCEEEecCCC
Confidence 4456666778889999988884 5555553 236889999999754
No 289
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=56.45 E-value=32 Score=31.12 Aligned_cols=53 Identities=11% Similarity=0.133 Sum_probs=43.5
Q ss_pred eEEEEEcCCCC-HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC
Q 029271 54 IVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 106 (196)
Q Consensus 54 ~V~IimGS~SD-~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~ 106 (196)
.+.|..|...+ .-+.+...+.|+++|+.+++...+..-+.+++.+.++++.++
T Consensus 35 LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D 88 (284)
T PRK14193 35 LGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPADATQEELNAVIDELNAD 88 (284)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 56677776654 456677788899999999999999999999999999988654
No 290
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=56.32 E-value=26 Score=23.63 Aligned_cols=28 Identities=18% Similarity=0.125 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccc
Q 029271 63 LDLPVMNDAARTLSDFGVPYEIKILPPH 90 (196)
Q Consensus 63 SD~~~~~~~~~~l~~~gi~~ev~V~SaH 90 (196)
..-+.+.+++..|++.|++|+..-....
T Consensus 7 ~~~p~~~rv~~~L~~~gl~~e~~~v~~~ 34 (71)
T cd03060 7 RRCPYAMRARMALLLAGITVELREVELK 34 (71)
T ss_pred CCCcHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 4457899999999999999987655544
No 291
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=56.30 E-value=57 Score=29.69 Aligned_cols=54 Identities=13% Similarity=0.046 Sum_probs=43.3
Q ss_pred CeEEEEEcCCCC-HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC
Q 029271 53 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 106 (196)
Q Consensus 53 ~~V~IimGS~SD-~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~ 106 (196)
.++.|+.|...+ .-+.+...+.|+++||.+++.-.+..-+.+++.+.++++.++
T Consensus 35 ~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D 89 (297)
T PRK14168 35 GLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQSVDITEEELLALIDKYNND 89 (297)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467777776654 455566688899999999998888888999999999988654
No 292
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=56.12 E-value=65 Score=23.47 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccC
Q 029271 66 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQ 130 (196)
Q Consensus 66 ~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~ 130 (196)
...++..+.++++++++.+. .-+ .| ...+.+..++.+++.+|.++.+.+.+...+-|.+.
T Consensus 49 ~~l~~~~~~~~~~~~~~~~~--~~~-~~--~~~I~~~~~~~~~dllviG~~~~~~~~~~~~Gs~~ 108 (124)
T cd01987 49 RRLAEALRLAEELGAEVVTL--PGD-DV--AEAIVEFAREHNVTQIVVGKSRRSRWRELFRGSLV 108 (124)
T ss_pred HHHHHHHHHHHHcCCEEEEE--eCC-cH--HHHHHHHHHHcCCCEEEeCCCCCchHHHHhcccHH
Confidence 34556667777888764422 112 22 33455555667788888888888877777666543
No 293
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.98 E-value=42 Score=30.25 Aligned_cols=54 Identities=15% Similarity=0.112 Sum_probs=43.6
Q ss_pred CeEEEEEcCCCC-HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC
Q 029271 53 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 106 (196)
Q Consensus 53 ~~V~IimGS~SD-~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~ 106 (196)
..+.|..|...+ .-+.+...+.++++|+.+++.-.+..-+.+++.+.++++.++
T Consensus 28 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 82 (279)
T PRK14178 28 RLATVIVGDDPASQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERIRRLNED 82 (279)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 367777776654 556666788999999999999999999999999999988654
No 294
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=55.37 E-value=1.2e+02 Score=26.98 Aligned_cols=80 Identities=15% Similarity=0.143 Sum_probs=56.2
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEc---ccCCchHHHHHHHH-HhhCCCeEEEEe----cCCCCchhHhh
Q 029271 54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALS-AKERGIKIIIVG----DGVEAHLSGVA 125 (196)
Q Consensus 54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~S---aHR~p~~~~~~~~~-~e~~~~~V~Iav----AG~sa~L~gvv 125 (196)
.++|-||... ++++...+=.+|+.--+.|.. .+-.|..+.+.+.. .++.+.++++++ .|-++++|+++
T Consensus 58 V~vlt~Gp~~----a~~~lr~aLAmGaDraili~d~~~~~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~l 133 (260)
T COG2086 58 VTVLTMGPPQ----AEEALREALAMGADRAILITDRAFAGADPLATAKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLL 133 (260)
T ss_pred EEEEEecchh----hHHHHHHHHhcCCCeEEEEecccccCccHHHHHHHHHHHHHhcCCCEEEEecccccCCccchHHHH
Confidence 5666678744 444555566899987777773 45556666665554 355667777754 56789999999
Q ss_pred hhccCCcEEEec
Q 029271 126 AANSQILVIRVP 137 (196)
Q Consensus 126 A~~t~~PVIgvP 137 (196)
|....+|.++-=
T Consensus 134 Ae~Lg~P~~t~v 145 (260)
T COG2086 134 AELLGWPQVTYV 145 (260)
T ss_pred HHHhCCceeeeE
Confidence 999999999754
No 295
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=55.26 E-value=85 Score=25.44 Aligned_cols=61 Identities=25% Similarity=0.196 Sum_probs=42.2
Q ss_pred CCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcc-cCCchHHHHHHHHHhhCCCeE
Q 029271 50 ADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPP-HQNCKEALSYALSAKERGIKI 110 (196)
Q Consensus 50 ~~~~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~Sa-HR~p~~~~~~~~~~e~~~~~V 110 (196)
...++|.|++|+-.-=.-+--+++.|...|+++++....- -+..+......+.+++-|.++
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ 84 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKI 84 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EE
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcE
Confidence 3457999999999888888889999999999877755543 355555666666666655433
No 296
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.24 E-value=68 Score=28.67 Aligned_cols=61 Identities=11% Similarity=0.129 Sum_probs=45.9
Q ss_pred CeEEEEEcCCCCHHHH-HHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC-CC-eEEEE
Q 029271 53 PIVGIIMESDLDLPVM-NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER-GI-KIIIV 113 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~-~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~-~~-~V~Ia 113 (196)
..+.|..|...+-... +--.+.|+++|++++..-.+.+-+++++.++++++.++ ++ -++|.
T Consensus 35 ~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~Vq 98 (283)
T PRK14192 35 ILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQ 98 (283)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEe
Confidence 3677777876655544 44556778999999999888899999999999998766 34 35554
No 297
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.16 E-value=69 Score=29.14 Aligned_cols=54 Identities=13% Similarity=0.159 Sum_probs=43.0
Q ss_pred CeEEEEEcCCC-CHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC
Q 029271 53 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 106 (196)
Q Consensus 53 ~~V~IimGS~S-D~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~ 106 (196)
.++.|+.|... +.-+.+...+.|+++||.+++.-.+..-+.+++.+.++++.++
T Consensus 34 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN~d 88 (294)
T PRK14187 34 CLIVILVGDDPASQLYVRNKQRKAEMLGLRSETILLPSTISESSLIEKINELNND 88 (294)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36677777654 4555666788999999999999999888889999999888654
No 298
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.04 E-value=35 Score=30.91 Aligned_cols=54 Identities=11% Similarity=0.182 Sum_probs=43.8
Q ss_pred CeEEEEEcCCCC-HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC
Q 029271 53 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 106 (196)
Q Consensus 53 ~~V~IimGS~SD-~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~ 106 (196)
.++.|+.|...+ .-+.+...+.|+++||.++..-.+..-+.+++.+.++++.++
T Consensus 28 ~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~d 82 (287)
T PRK14181 28 GLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNND 82 (287)
T ss_pred cEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467777776544 556677788899999999999999999999999999988654
No 299
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=55.02 E-value=22 Score=34.17 Aligned_cols=89 Identities=20% Similarity=0.247 Sum_probs=57.2
Q ss_pred CCCCeEEEEEcCCCCHHHHHHHHHHH----H-HhCCC-----------------eEE-------------EEEcccCCch
Q 029271 50 ADAPIVGIIMESDLDLPVMNDAARTL----S-DFGVP-----------------YEI-------------KILPPHQNCK 94 (196)
Q Consensus 50 ~~~~~V~IimGS~SD~~~~~~~~~~l----~-~~gi~-----------------~ev-------------~V~SaHR~p~ 94 (196)
++.-+|+|++++ -|-|-+.-+...+ . .+|+. .++ .+.+--|.+.
T Consensus 85 p~~~~iaIvT~G-G~~PGlN~vIr~iv~~~~~~~~v~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GGTiLGTSR~~~ 163 (459)
T PTZ00286 85 PKEVKAGIVTCG-GLCPGLNVVIRELVMNLINNYGVKTIYGAKYGYKGLYKEDWIKLDPKDVKTIHRLGGTILGSSRGGF 163 (459)
T ss_pred ccccEEEEECCC-CCChHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHhcCCCeEECCHHHhhhHHhCCCceeccCCChh
Confidence 344589999976 6777777554332 2 23431 010 2344457778
Q ss_pred HHHHHHHHHhhCCCeEEEEecCCCCchhHh-hhh-----ccCCcEEEecCC
Q 029271 95 EALSYALSAKERGIKIIIVGDGVEAHLSGV-AAA-----NSQILVIRVPLL 139 (196)
Q Consensus 95 ~~~~~~~~~e~~~~~V~IavAG~sa~L~gv-vA~-----~t~~PVIgvP~~ 139 (196)
...++++.+++.+++.+|.+.|-...-+.. ++- .-.+||||+|-.
T Consensus 164 ~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKT 214 (459)
T PTZ00286 164 DPKVMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKT 214 (459)
T ss_pred hHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccc
Confidence 899999999999999888887754433222 222 246999999975
No 300
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=54.81 E-value=21 Score=34.17 Aligned_cols=88 Identities=24% Similarity=0.280 Sum_probs=57.3
Q ss_pred CCCCeEEEEEcCCCCHHHHHHHHH----HH-HHhCCC------------e-----EE----------------EEEcccC
Q 029271 50 ADAPIVGIIMESDLDLPVMNDAAR----TL-SDFGVP------------Y-----EI----------------KILPPHQ 91 (196)
Q Consensus 50 ~~~~~V~IimGS~SD~~~~~~~~~----~l-~~~gi~------------~-----ev----------------~V~SaHR 91 (196)
++.-+++|++++ -|-|-+..+.. .+ +.+|+. + ++ .+.+--|
T Consensus 78 p~~~riaIvtsG-G~~PGmN~vIr~iv~~a~~~~gv~~V~Gi~~Gy~GL~~~~~~~~~~Lt~~~v~~i~~~GGTiLGTsR 156 (443)
T PRK06830 78 PSKVKAAIVTCG-GLCPGLNDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGHDPVELTPEVVADIHEFGGTILGSSR 156 (443)
T ss_pred CcccEEEEECCC-CCchHHHHHHHHHHHHHHHhCCCeEEEEEccCHHHHhhccCCCEEECCHHHHhhHHhCCCccccCCC
Confidence 344589999976 67787775543 22 233431 0 10 2344557
Q ss_pred CchHHHHHHHHHhhCCCeEEEEecCCCCchhHh--hhh-----ccCCcEEEecCC
Q 029271 92 NCKEALSYALSAKERGIKIIIVGDGVEAHLSGV--AAA-----NSQILVIRVPLL 139 (196)
Q Consensus 92 ~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gv--vA~-----~t~~PVIgvP~~ 139 (196)
.++...++++.++..+++.+|.+.|-. .+-+. ++- ...+||||+|-.
T Consensus 157 ~~~~~~~iv~~L~~~~I~~L~vIGGdg-T~~gA~~l~ee~~~~g~~I~VIGIPKT 210 (443)
T PRK06830 157 GPQDPEEIVDTLERMNINILFVIGGDG-TLRGASAIAEEIERRGLKISVIGIPKT 210 (443)
T ss_pred CchhHHHHHHHHHHcCCCEEEEeCCch-HHHHHHHHHHHHHHhCCCceEEEeccc
Confidence 888899999999999999888887653 33332 221 245899999975
No 301
>PRK07109 short chain dehydrogenase; Provisional
Probab=54.69 E-value=88 Score=27.71 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=13.2
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhC
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFG 79 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~g 79 (196)
.++++|+|+++ .+...+.+.|.+-|
T Consensus 8 ~k~vlITGas~--gIG~~la~~la~~G 32 (334)
T PRK07109 8 RQVVVITGASA--GVGRATARAFARRG 32 (334)
T ss_pred CCEEEEECCCC--HHHHHHHHHHHHCC
Confidence 34566666655 34444555555445
No 302
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=54.66 E-value=1.1e+02 Score=24.61 Aligned_cols=79 Identities=8% Similarity=0.075 Sum_probs=47.6
Q ss_pred EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--hcc
Q 029271 55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANS 129 (196)
Q Consensus 55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA--~~t 129 (196)
|+++..+.+| ....+.+.+.++++|+.+.+ ...-..++...+.++.....+++.+|...+...... ++. -.-
T Consensus 2 igvv~~~~~~~~~~~~~~~i~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~-~~~~~~~~ 78 (266)
T cd06282 2 VGVVLPSLANPVFAECVQGIQEEARAAGYSLLL--ATTDYDAEREADAVETLLRQRVDGLILTVADAATSP-ALDLLDAE 78 (266)
T ss_pred eEEEeCCCCcchHHHHHHHHHHHHHHCCCEEEE--eeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCchH-HHHHHhhC
Confidence 5667655455 34556777788888875554 433456677777777777777876666544432222 222 234
Q ss_pred CCcEEEe
Q 029271 130 QILVIRV 136 (196)
Q Consensus 130 ~~PVIgv 136 (196)
..||+.+
T Consensus 79 ~ipvV~~ 85 (266)
T cd06282 79 RVPYVLA 85 (266)
T ss_pred CCCEEEE
Confidence 5787765
No 303
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=54.55 E-value=15 Score=30.24 Aligned_cols=76 Identities=14% Similarity=0.057 Sum_probs=43.0
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCc
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQIL 132 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~P 132 (196)
++-++|.|.. .-+....+..|.+-|. .|...|..++.+.++.+ .++++|+++|..+-+.+=.= .-..-
T Consensus 36 Gk~v~VvGrs--~~VG~Pla~lL~~~~a----tVt~~h~~T~~l~~~~~-----~ADIVVsa~G~~~~i~~~~i-k~gav 103 (160)
T PF02882_consen 36 GKKVVVVGRS--NIVGKPLAMLLLNKGA----TVTICHSKTKNLQEITR-----RADIVVSAVGKPNLIKADWI-KPGAV 103 (160)
T ss_dssp T-EEEEE-TT--TTTHHHHHHHHHHTT-----EEEEE-TTSSSHHHHHT-----TSSEEEE-SSSTT-B-GGGS--TTEE
T ss_pred CCEEEEECCc--CCCChHHHHHHHhCCC----eEEeccCCCCcccceee-----eccEEeeeeccccccccccc-cCCcE
Confidence 4444444432 2356667777776654 56668888888888775 37999999999888766432 12234
Q ss_pred EEEecCCC
Q 029271 133 VIRVPLLS 140 (196)
Q Consensus 133 VIgvP~~~ 140 (196)
||.|-...
T Consensus 104 VIDvG~~~ 111 (160)
T PF02882_consen 104 VIDVGINY 111 (160)
T ss_dssp EEE--CEE
T ss_pred EEecCCcc
Confidence 77776643
No 304
>TIGR01506 ribC_arch riboflavin synthase. This archaeal protein catalyzes the same reaction, the final step in riboflavin biosynthesis, as bacterial riboflavin biosynthesis alpha chain. However, it is more similar in sequence to 6,7-dimethyl-8-ribityllumazine synthase, which catalyzes the previous reaction and which (in bacteria) is called the riboflavin synthase beta chain.
Probab=54.52 E-value=33 Score=28.44 Aligned_cols=106 Identities=15% Similarity=0.045 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHHH--hCCCeE-EEEEcccCCchHHHHHHHHHhhCCCeEEEEe----cCCCCchhHh--------hhh
Q 029271 63 LDLPVMNDAARTLSD--FGVPYE-IKILPPHQNCKEALSYALSAKERGIKIIIVG----DGVEAHLSGV--------AAA 127 (196)
Q Consensus 63 SD~~~~~~~~~~l~~--~gi~~e-v~V~SaHR~p~~~~~~~~~~e~~~~~V~Iav----AG~sa~L~gv--------vA~ 127 (196)
+-.+-.+.|.+.|++ .|+.++ ++|-++.-.|-...++++ +.+++.+|+. -|-.-|.--+ ++-
T Consensus 10 ~~~~M~~gA~~~L~~~g~g~~i~v~~VPGa~EiP~aak~l~~---~~~~DaVIaLG~VIrGeT~Hfd~V~vs~GL~~lsl 86 (151)
T TIGR01506 10 ARYDMGGAAIDELRKHTAGIKIIRRTVPGIKDLPVAAKKLLE---EEGCEMVITLGWVGPEEKDKLSYHEASTGLIQVQL 86 (151)
T ss_pred hhhhHHHHHHHHHHhcCCCCeEEEEECCcHhHHHHHHHHHHh---cCCCCEEEEeceEEcCCCCcEeHHHHHHHHHHHHh
Confidence 445566788999998 677776 688888777777666653 2457777763 3444443332 234
Q ss_pred ccCCcEEEecCCCCCCChhhhhhhhcCCCCCeeeEEecCChhhHHHHHHHHHccC
Q 029271 128 NSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIA 182 (196)
Q Consensus 128 ~t~~PVIgvP~~~~~~~G~DLlS~lqmPsGvpvatV~I~~~~nAA~~AaqILa~~ 182 (196)
.+..|||. +.+.+...+++- + .| .-..|.+..||..|..++.+.
T Consensus 87 ~~~~PVi~--VlT~e~eeQA~~---R--ag----~~~~nkG~eaA~aaleMi~l~ 130 (151)
T TIGR01506 87 MTNKHVID--VTVHEDEAEDPE---E--LK----VLADNRAREHAQNLIMLLFKP 130 (151)
T ss_pred hhCCCEEE--EEeeCCHHHHHH---H--hc----ccccChHHHHHHHHHHHHHHH
Confidence 57899998 444333333311 1 11 123489999999999999873
No 305
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=54.37 E-value=58 Score=22.00 Aligned_cols=28 Identities=25% Similarity=0.320 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEEEc
Q 029271 61 SDLDLPVMNDAARTLSDFGVPYEIKILP 88 (196)
Q Consensus 61 S~SD~~~~~~~~~~l~~~gi~~ev~V~S 88 (196)
|.+.=+.|.++++.|++.|++|+..-..
T Consensus 7 s~~~Cp~C~~ak~~L~~~~i~~~~~~v~ 34 (72)
T cd03029 7 TKPGCPFCARAKAALQENGISYEEIPLG 34 (72)
T ss_pred ECCCCHHHHHHHHHHHHcCCCcEEEECC
Confidence 4567799999999999999999765443
No 306
>PLN02884 6-phosphofructokinase
Probab=54.36 E-value=21 Score=33.77 Aligned_cols=90 Identities=21% Similarity=0.277 Sum_probs=56.9
Q ss_pred cCCCCeEEEEEcCCCCHHHHHHHHHHH----HHhCCC--------------e---EE---------------EEEcccCC
Q 029271 49 AADAPIVGIIMESDLDLPVMNDAARTL----SDFGVP--------------Y---EI---------------KILPPHQN 92 (196)
Q Consensus 49 ~~~~~~V~IimGS~SD~~~~~~~~~~l----~~~gi~--------------~---ev---------------~V~SaHR~ 92 (196)
.+.+-+|+|++++ -|-|=|+-+...+ ...|+. - ++ .+.+--|.
T Consensus 50 ~p~~~rIaIltsG-GdaPGmNa~Iravv~~a~~~g~~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt~LGtsR~ 128 (411)
T PLN02884 50 EPEEVKAAIVTCG-GLCPGLNDVIRQIVFTLEIYGVKNIVGIPFGYRGFFEKGLSEMPLSRKVVQNIHLSGGSLLGVSRG 128 (411)
T ss_pred CCcceEEEEEcCC-CCCccHhHHHHHHHHHHHHcCCcEEEEEccCHHHHhCCCceeeecCHHHHHHHHhCCCceeccCCC
Confidence 3445589999976 6888777555443 345652 0 11 12223355
Q ss_pred chHHHHHHHHHhhCCCeEEEEecCCCCchhHh-hhh-----ccCCcEEEecCC
Q 029271 93 CKEALSYALSAKERGIKIIIVGDGVEAHLSGV-AAA-----NSQILVIRVPLL 139 (196)
Q Consensus 93 p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gv-vA~-----~t~~PVIgvP~~ 139 (196)
.....++++++++.+++.+|++.|-...-+.- ++- ...+||||+|-.
T Consensus 129 ~~~~~~i~~~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkT 181 (411)
T PLN02884 129 GAKTSDIVDSIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKT 181 (411)
T ss_pred CccHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEecccc
Confidence 66788899999999999888887754332221 221 145999999975
No 307
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=54.31 E-value=81 Score=22.85 Aligned_cols=59 Identities=22% Similarity=0.288 Sum_probs=44.5
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecC
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 116 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG 116 (196)
..+.++....-|=+. +..+++.||+. .+|-+|-+.....+.++++..+ +|..+.|+.-|
T Consensus 10 ~~~~~lvS~s~DGe~---ia~~~~~~G~~-~iRGSs~rgg~~Alr~~~~~lk-~G~~~~itpDG 68 (74)
T PF04028_consen 10 RKIAALVSRSRDGEL---IARVLERFGFR-TIRGSSSRGGARALREMLRALK-EGYSIAITPDG 68 (74)
T ss_pred CCEEEEEccCcCHHH---HHHHHHHcCCC-eEEeCCCCcHHHHHHHHHHHHH-CCCeEEEeCCC
Confidence 356666666667555 55677999997 6788888888888888888777 67888888766
No 308
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=54.30 E-value=28 Score=31.50 Aligned_cols=81 Identities=16% Similarity=0.141 Sum_probs=52.4
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhCC-CeEEEEEcccC-----CchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh
Q 029271 54 IVGIIMESDLDLPVMNDAARTLSDFGV-PYEIKILPPHQ-----NCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA 127 (196)
Q Consensus 54 ~V~IimGS~SD~~~~~~~~~~l~~~gi-~~ev~V~SaHR-----~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~ 127 (196)
.+.|.+|...|-.+.....+ .|++ ..++.+.+--. +...+..+-+.++....+++++..=+...|++.+|+
T Consensus 11 ~~li~tG~H~~~~~g~~~~~---~f~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Pd~Vlv~GD~~~~la~alaA 87 (346)
T PF02350_consen 11 LILIVTGQHLDPEMGDTFFE---GFGIPKPDYLLDSDSQSMAKSTGLAIIELADVLEREKPDAVLVLGDRNEALAAALAA 87 (346)
T ss_dssp EEEEEECSS--CHHHHHHHH---HTT--SEEEE--STTS-HHHHHHHHHHHHHHHHHHHT-SEEEEETTSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHh---hCCCCCCCcccccccchHHHHHHHHHHHHHHHHHhcCCCEEEEEcCCchHHHHHHHH
Confidence 68899999999999888766 8888 45555552211 222333444455556678999999999999977776
Q ss_pred -ccCCcEEEec
Q 029271 128 -NSQILVIRVP 137 (196)
Q Consensus 128 -~t~~PVIgvP 137 (196)
....||+++=
T Consensus 88 ~~~~ipv~Hie 98 (346)
T PF02350_consen 88 FYLNIPVAHIE 98 (346)
T ss_dssp HHTT-EEEEES
T ss_pred HHhCCCEEEec
Confidence 4899999864
No 309
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=54.29 E-value=62 Score=21.51 Aligned_cols=58 Identities=14% Similarity=0.040 Sum_probs=40.7
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhCCCe------------EEEEEcccCCchHHHHHHHHHh-hCCCeEEE
Q 029271 54 IVGIIMESDLDLPVMNDAARTLSDFGVPY------------EIKILPPHQNCKEALSYALSAK-ERGIKIII 112 (196)
Q Consensus 54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~------------ev~V~SaHR~p~~~~~~~~~~e-~~~~~V~I 112 (196)
.-.|-+|+.++.+.+++....|+..|.+. .+++ +...+-++..+..+++. ..+.+.||
T Consensus 4 ~y~vQv~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~-G~f~~~~~A~~~~~~l~~~~~~~~~v 74 (76)
T PF05036_consen 4 GYYVQVGSFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRV-GPFSSREEAEAALRKLKKAAGPDAFV 74 (76)
T ss_dssp EEEEEEEEES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEE-CCECTCCHHHHHHHHHHHHHTS--EE
T ss_pred cEEEEEEEcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEE-CCCCCHHHHHHHHHHHhHhhCCCCEE
Confidence 46788899999999999999999888752 2343 56788888888888887 66665544
No 310
>PRK13761 hypothetical protein; Provisional
Probab=54.25 E-value=32 Score=30.68 Aligned_cols=84 Identities=19% Similarity=0.181 Sum_probs=56.7
Q ss_pred EEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--------
Q 029271 55 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA-------- 126 (196)
Q Consensus 55 V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA-------- 126 (196)
|.=|=|-+.=+ .-+++.+..+..|.+.|+. =+|||.++..++.+.+++.|++.+....- +..+|+.=+
T Consensus 71 VISVNGN~AAL-~p~eiveLa~~~~A~iEVN--LF~RT~eR~~~I~~~l~~~Ga~~vlG~~~-~~~ip~L~~~R~~v~~~ 146 (248)
T PRK13761 71 VISVNGNTAAL-VPEEIVELAEALNAKLEVN--LFYRTEERVEKIAEVLREHGAKEVLGTDE-DARIPGLDHERAKVSED 146 (248)
T ss_pred eEEEcchHHhh-ChHHHHHHHHHhCCCEEEE--eccCCHHHHHHHHHHHHHcCCceeeCCCC-cCcCCCCCCccceECcc
Confidence 44444544332 3456677778888876655 48999999999999999999985554422 566666533
Q ss_pred hccCCcEEEecCCCCC
Q 029271 127 ANSQILVIRVPLLSED 142 (196)
Q Consensus 127 ~~t~~PVIgvP~~~~~ 142 (196)
|.-.--|+=||...++
T Consensus 147 GIy~ADVVLVPLEDGD 162 (248)
T PRK13761 147 GIYSADVVLVPLEDGD 162 (248)
T ss_pred cceeccEEEecCCCCc
Confidence 2344568889997654
No 311
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=54.23 E-value=91 Score=28.38 Aligned_cols=68 Identities=21% Similarity=0.298 Sum_probs=41.1
Q ss_pred CCCeEEEEE-cCCC------CHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc
Q 029271 51 DAPIVGIIM-ESDL------DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH 120 (196)
Q Consensus 51 ~~~~V~Iim-GS~S------D~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~ 120 (196)
..++|+|++ |+.- |. ...-++..|+++|+.......-. -.++.+.+.++++..++++++|+-+|.+-.
T Consensus 158 r~~rv~II~TG~Ev~~G~i~D~-~~~~l~~~L~~~G~~v~~~~iv~-Dd~~~I~~ai~~~~~~g~DlIItTGGtsvg 232 (312)
T cd03522 158 RPLRVGLIVTGSEVYGGRIEDK-FGPVLRARLAALGVELVEQVIVP-HDEAAIAAAIAEALEAGAELLILTGGASVD 232 (312)
T ss_pred CCCEEEEEEcCCcCCCCcEEEh-HHHHHHHHHHHCCCEEEEEEEcC-CCHHHHHHHHHHHhcCCCCEEEEeCCcccC
Confidence 357899997 5411 22 12345666889998644333322 234555555555555678999998887643
No 312
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=54.06 E-value=45 Score=25.40 Aligned_cols=76 Identities=11% Similarity=0.076 Sum_probs=50.5
Q ss_pred EEEEE-cCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--hccCC
Q 029271 55 VGIIM-ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANSQI 131 (196)
Q Consensus 55 V~Iim-GS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA--~~t~~ 131 (196)
|.+++ |+.|=--.++|+++.+++-|+++++.-+|. .++.+.. +++++++...-..-.+.-+-. .....
T Consensus 3 Ill~C~~GaSSs~la~km~~~a~~~gi~~~i~a~~~----~e~~~~~-----~~~Dvill~PQv~~~~~~i~~~~~~~~i 73 (99)
T cd05565 3 VLVLCAGGGTSGLLANALNKGAKERGVPLEAAAGAY----GSHYDMI-----PDYDLVILAPQMASYYDELKKDTDRLGI 73 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeH----HHHHHhc-----cCCCEEEEcChHHHHHHHHHHHhhhcCC
Confidence 44454 455666778999999999999999876655 3332222 346888887666666666643 34456
Q ss_pred cEEEecCC
Q 029271 132 LVIRVPLL 139 (196)
Q Consensus 132 PVIgvP~~ 139 (196)
||.-+|+.
T Consensus 74 pv~~I~~~ 81 (99)
T cd05565 74 KLVTTTGK 81 (99)
T ss_pred CEEEeCHH
Confidence 78777654
No 313
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=54.05 E-value=19 Score=35.52 Aligned_cols=48 Identities=17% Similarity=0.098 Sum_probs=34.6
Q ss_pred CchHHHHHHHHHhhCCCeEEEEecCCC-CchhHhhhh-----ccCCcEEEecCC
Q 029271 92 NCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAA-----NSQILVIRVPLL 139 (196)
Q Consensus 92 ~p~~~~~~~~~~e~~~~~V~IavAG~s-a~L~gvvA~-----~t~~PVIgvP~~ 139 (196)
+++...+.++..++.+++.+|.+.|-. +.=+-.++- ....+|||||-.
T Consensus 175 ~~e~~~~~~~~l~~l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKT 228 (568)
T PLN02251 175 TPEQFKQAEETATKLDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKT 228 (568)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCce
Confidence 557788889999999998777777753 323334432 467999999985
No 314
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.03 E-value=57 Score=29.47 Aligned_cols=54 Identities=15% Similarity=0.124 Sum_probs=43.8
Q ss_pred CeEEEEEcCCCC-HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC
Q 029271 53 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 106 (196)
Q Consensus 53 ~~V~IimGS~SD-~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~ 106 (196)
..+.|+.|...+ .-+.+...+.|+++|+.+++.-.+...+.+++.+.++++.++
T Consensus 34 ~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d 88 (286)
T PRK14175 34 KLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNND 88 (286)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 367777776654 456667778889999999999999999999999999988654
No 315
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.69 E-value=68 Score=28.99 Aligned_cols=54 Identities=11% Similarity=0.113 Sum_probs=42.6
Q ss_pred CeEEEEEcCCCC-HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC
Q 029271 53 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 106 (196)
Q Consensus 53 ~~V~IimGS~SD-~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~ 106 (196)
..+.|..|...+ .-+.+...+.|+++||.+++.-.+..-+.+++.+.++++.++
T Consensus 32 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~d 86 (282)
T PRK14182 32 GLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALIARLNAD 86 (282)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 367777776554 455566688899999999999888888899999999888654
No 316
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=53.46 E-value=29 Score=30.61 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=38.9
Q ss_pred CCeEEEE---EcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecC
Q 029271 52 APIVGII---MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 116 (196)
Q Consensus 52 ~~~V~Ii---mGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG 116 (196)
.++|+.| .++..|-++.++.++.|+++|+. |.+.|+....+..+-+...+ .++|.++.|
T Consensus 32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~----v~~L~l~~~~~~~Ie~~l~~--~d~IyVgGG 93 (224)
T COG3340 32 RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLE----VSELHLSKPPLAAIENKLMK--ADIIYVGGG 93 (224)
T ss_pred CceEEEEecCccccchHHHHHHHHHHHHHcCCe----eeeeeccCCCHHHHHHhhhh--ccEEEECCc
Confidence 3466666 35667788999999999999985 55566666666555444433 355555444
No 317
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.44 E-value=41 Score=30.41 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=43.8
Q ss_pred CeEEEEEcCCC-CHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC
Q 029271 53 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 106 (196)
Q Consensus 53 ~~V~IimGS~S-D~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~ 106 (196)
..+.|+.|... +.-+.+...+.|+++|+.+++.-.+..-+.+++.+.++++.++
T Consensus 35 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~d 89 (285)
T PRK10792 35 GLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPETTSEAELLALIDELNAD 89 (285)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36667677654 4556777788999999999999999999999999999988654
No 318
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.22 E-value=21 Score=32.38 Aligned_cols=67 Identities=12% Similarity=0.160 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhCCCe-------------------------EEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCch
Q 029271 67 VMNDAARTLSDFGVPY-------------------------EIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 121 (196)
Q Consensus 67 ~~~~~~~~l~~~gi~~-------------------------ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L 121 (196)
+.+-+.+.|+.+|+++ ...|+..|..+..+.++.++ ++++|+++|..+-+
T Consensus 143 Tp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T~~l~~~~~~-----ADIvVsAvGkp~~i 217 (294)
T PRK14187 143 TPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSATRDLADYCSK-----ADILVAAVGIPNFV 217 (294)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCCCCHHHHHhh-----CCEEEEccCCcCcc
Confidence 4555667777777654 24788889988888777654 69999999999887
Q ss_pred hHhhhhccCCcEEEecCC
Q 029271 122 SGVAAANSQILVIRVPLL 139 (196)
Q Consensus 122 ~gvvA~~t~~PVIgvP~~ 139 (196)
.+=.--.-.. ||-|=+.
T Consensus 218 ~~~~ik~gai-VIDVGin 234 (294)
T PRK14187 218 KYSWIKKGAI-VIDVGIN 234 (294)
T ss_pred CHHHcCCCCE-EEEeccc
Confidence 6533222222 7777443
No 319
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.22 E-value=37 Score=30.64 Aligned_cols=53 Identities=11% Similarity=0.160 Sum_probs=43.2
Q ss_pred eEEEEEcCCC-CHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC
Q 029271 54 IVGIIMESDL-DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 106 (196)
Q Consensus 54 ~V~IimGS~S-D~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~ 106 (196)
.+.|..|... +.-+.+...+.++++|+.+++.-.+..-+.+++.+.++++.++
T Consensus 33 Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D 86 (282)
T PRK14166 33 LAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNHD 86 (282)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6777777654 4556677788899999999999999999999999999988654
No 320
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=53.05 E-value=63 Score=22.54 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEE
Q 029271 52 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKIL 87 (196)
Q Consensus 52 ~~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~ 87 (196)
+.+|.+.+. +.=++|.++++.|+++|++|+..-.
T Consensus 7 ~~~V~ly~~--~~Cp~C~~ak~~L~~~gi~y~~idi 40 (79)
T TIGR02190 7 PESVVVFTK--PGCPFCAKAKATLKEKGYDFEEIPL 40 (79)
T ss_pred CCCEEEEEC--CCCHhHHHHHHHHHHcCCCcEEEEC
Confidence 346666654 6779999999999999999986443
No 321
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.02 E-value=60 Score=29.59 Aligned_cols=54 Identities=11% Similarity=0.111 Sum_probs=43.4
Q ss_pred CeEEEEEcCCCC-HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC
Q 029271 53 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 106 (196)
Q Consensus 53 ~~V~IimGS~SD-~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~ 106 (196)
.++.|..|...+ .-+.+...+.|+++||.+++.-.+..-+.+++.+.++++.++
T Consensus 35 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D 89 (301)
T PRK14194 35 ALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLLALIAELNAD 89 (301)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 367777776554 456677778999999999999998888999999999988654
No 322
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=52.81 E-value=76 Score=28.92 Aligned_cols=57 Identities=11% Similarity=0.057 Sum_probs=45.9
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCc-hHHHHHHHHHhhCCCeEE
Q 029271 54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNC-KEALSYALSAKERGIKII 111 (196)
Q Consensus 54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p-~~~~~~~~~~e~~~~~V~ 111 (196)
.|-|.+ +.+|.+..++..+..+++|......+.-+|+.+ +++.++++.+++-|++.|
T Consensus 103 ~iri~~-~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i 160 (333)
T TIGR03217 103 TVRVAT-HCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCV 160 (333)
T ss_pred EEEEEe-ccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEE
Confidence 344443 678888999999999999998888888888765 778889999988888754
No 323
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=52.72 E-value=21 Score=32.25 Aligned_cols=50 Identities=18% Similarity=0.203 Sum_probs=35.0
Q ss_pred EEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCcEEEecCC
Q 029271 84 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 139 (196)
Q Consensus 84 v~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PVIgvP~~ 139 (196)
..|+..|+.+..+.++.++ ++++|+++|..+-+.+=.-..-.. ||-|=+.
T Consensus 183 ATVt~chs~T~dl~~~~k~-----ADIvIsAvGkp~~i~~~~vk~gav-VIDvGin 232 (282)
T PRK14180 183 ATVTTCHRFTTDLKSHTTK-----ADILIVAVGKPNFITADMVKEGAV-VIDVGIN 232 (282)
T ss_pred CEEEEEcCCCCCHHHHhhh-----cCEEEEccCCcCcCCHHHcCCCcE-EEEeccc
Confidence 3678889888888777653 699999999999876633222222 7777654
No 324
>PRK06886 hypothetical protein; Validated
Probab=52.65 E-value=1.8e+02 Score=26.45 Aligned_cols=99 Identities=15% Similarity=0.131 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEcccCCc--hHHHHHHHHHhhCCC--eEEEEecCCCCch--------hHhhhhccCCc
Q 029271 65 LPVMNDAARTLSDFGVPYEIKILPPHQNC--KEALSYALSAKERGI--KIIIVGDGVEAHL--------SGVAAANSQIL 132 (196)
Q Consensus 65 ~~~~~~~~~~l~~~gi~~ev~V~SaHR~p--~~~~~~~~~~e~~~~--~V~IavAG~sa~L--------~gvvA~~t~~P 132 (196)
.+++..+.+..+++|++.++++.- ...+ ..++.+.+.....|. +|.++=+---+.. -..+ +.....
T Consensus 161 ~e~l~~~~~lA~~~g~~Id~Hlde-~~~~~~~~le~l~~~~~~~Gl~grV~~sH~~~L~~~~~~~~~~~i~~L-a~agi~ 238 (329)
T PRK06886 161 LEAMDILLDTAKSLGKMVHVHVDQ-FNTPKEKETEQLCDKTIEHGMQGRVVAIHGISIGAHSKEYRYRLYQKM-READMM 238 (329)
T ss_pred HHHHHHHHHHHHHcCCCeEEeECC-CCchhHHHHHHHHHHHHHcCCCCCEEEEEeccccCcChhhHHHHHHHH-HHcCCe
Confidence 367899999999999999999873 2222 234444544445555 5555433322222 2333 345567
Q ss_pred EEEecCCCC----------CCChhh-hhhhhcCCCCCeeeEEecCCh
Q 029271 133 VIRVPLLSE----------DWSEDD-VINSIRMPSHVQVASVPRNNA 168 (196)
Q Consensus 133 VIgvP~~~~----------~~~G~D-LlS~lqmPsGvpvatV~I~~~ 168 (196)
|+.||.+.- -..|+- +.-++. .||+|+ +|.||.
T Consensus 239 Vv~~P~snl~l~~~~~~~p~~rGv~pv~eL~~--aGV~V~-lGtDnv 282 (329)
T PRK06886 239 VIACPMAWIDSNRKEDLMPFHNALTPADEMIP--EGITVA-LGTDNI 282 (329)
T ss_pred EEECchhhhhhccccccCcCCCCCCCHHHHHH--CCCeEE-EecCCC
Confidence 999998531 134555 555555 788887 355553
No 325
>PRK14071 6-phosphofructokinase; Provisional
Probab=52.62 E-value=20 Score=33.15 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhhCCCeEEEEecCCCCchhHh--hhhccCCcEEEecCC
Q 029271 94 KEALSYALSAKERGIKIIIVGDGVEAHLSGV--AAANSQILVIRVPLL 139 (196)
Q Consensus 94 ~~~~~~~~~~e~~~~~V~IavAG~sa~L~gv--vA~~t~~PVIgvP~~ 139 (196)
+...++++.+++.+++.+|.+.|-.. +.+. ++=+..+||||+|-.
T Consensus 94 ~~~~~~~~~l~~~~Id~Li~IGGdgS-~~~a~~L~~~~~i~vIgiPkT 140 (360)
T PRK14071 94 DRSQEIIDGYHSLGLDALIGIGGDGS-LAILRRLAQQGGINLVGIPKT 140 (360)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChhH-HHHHHHHHHhcCCcEEEeccc
Confidence 45677888888888988888877643 3222 222237999999975
No 326
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=52.61 E-value=43 Score=30.39 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhCC
Q 029271 52 APIVGIIMESDLDLPVMNDAARTLSDFGV 80 (196)
Q Consensus 52 ~~~V~IimGS~SD~~~~~~~~~~l~~~gi 80 (196)
.++++||+|++| .+..++++.|..-|.
T Consensus 34 ~~~~~vVTGans--GIG~eta~~La~~Ga 60 (314)
T KOG1208|consen 34 SGKVALVTGATS--GIGFETARELALRGA 60 (314)
T ss_pred CCcEEEEECCCC--chHHHHHHHHHhCCC
Confidence 468999999998 888888888888884
No 327
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=52.41 E-value=34 Score=21.35 Aligned_cols=30 Identities=20% Similarity=0.270 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEcccCCch
Q 029271 65 LPVMNDAARTLSDFGVPYEIKILPPHQNCK 94 (196)
Q Consensus 65 ~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~ 94 (196)
-+.|++++..|+..|++|+...........
T Consensus 9 ~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~ 38 (71)
T cd00570 9 SPRSLRVRLALEEKGLPYELVPVDLGEGEQ 38 (71)
T ss_pred CccHHHHHHHHHHcCCCcEEEEeCCCCCCC
Confidence 378999999999999999987766544433
No 328
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=52.23 E-value=86 Score=27.45 Aligned_cols=54 Identities=7% Similarity=0.016 Sum_probs=44.8
Q ss_pred EEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCC-chHHHHHHHHHhhCCCeEE
Q 029271 58 IMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQN-CKEALSYALSAKERGIKII 111 (196)
Q Consensus 58 imGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~-p~~~~~~~~~~e~~~~~V~ 111 (196)
+.-..++++.+.++.+..++.|..+.+.+..++|. ++.+.++++++.+-|++.|
T Consensus 101 i~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i 155 (266)
T cd07944 101 VAFHKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVF 155 (266)
T ss_pred EecccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEE
Confidence 34466899999999999999999888888888876 5888889999988888643
No 329
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=52.18 E-value=2e+02 Score=26.73 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=21.9
Q ss_pred CCCeeeEEecC---ChhhHHHHHHHHHccCCH
Q 029271 156 SHVQVASVPRN---NAKNAALYAVKVLGIADE 184 (196)
Q Consensus 156 sGvpvatV~I~---~~~nAA~~AaqILa~~d~ 184 (196)
.|- |+.+++| -|..+|..+.+||.=.+|
T Consensus 252 ~Ga-~aA~gvdy~~~G~qtg~~v~~ILkG~~p 282 (322)
T COG2984 252 EGA-LAALGVDYKDLGKQTGEMVVKILKGKKP 282 (322)
T ss_pred cCc-ceeeccCHHHHHHHHHHHHHHHHcCCCc
Confidence 554 5788888 488999999999985444
No 330
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=52.13 E-value=1.2e+02 Score=26.05 Aligned_cols=85 Identities=12% Similarity=0.103 Sum_probs=55.9
Q ss_pred CCCCeEEEEEcCCCCHHHHHHHHHHHH----Hh--CCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhH
Q 029271 50 ADAPIVGIIMESDLDLPVMNDAARTLS----DF--GVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG 123 (196)
Q Consensus 50 ~~~~~V~IimGS~SD~~~~~~~~~~l~----~~--gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~g 123 (196)
+++.+|++|-|-.. +.+.+-..-+. .. ++.+..+..+-.-.|++..++.+.+.++|++||.+.+ .+++.
T Consensus 118 t~t~kVG~I~g~~~--~~~~~~~~gF~~G~~~~~p~~~v~~~~~g~~~D~~~a~~~a~~l~~~G~DvI~~~~---~~~g~ 192 (258)
T cd06353 118 TKTNKVGYVAAFPI--PEVVRGINAFALGARSVNPDATVKVIWTGSWFDPAKEKEAALALIDQGADVIYQHT---DSPGV 192 (258)
T ss_pred hcCCcEEEEcCccc--HHHHHHHHHHHHHHHHHCCCcEEEEEEecCCCCcHHHHHHHHHHHHCCCcEEEecC---CChHH
Confidence 34578999988643 44443333332 12 2234556666777899999999999999999999988 34444
Q ss_pred hhhh-ccCCcEEEecCC
Q 029271 124 VAAA-NSQILVIRVPLL 139 (196)
Q Consensus 124 vvA~-~t~~PVIgvP~~ 139 (196)
+-|+ ....++||+-..
T Consensus 193 ~~aa~~~g~~~IG~d~d 209 (258)
T cd06353 193 IQAAEEKGVYAIGYVSD 209 (258)
T ss_pred HHHHHHhCCEEEeeccc
Confidence 4343 356789998643
No 331
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=51.90 E-value=24 Score=32.11 Aligned_cols=46 Identities=20% Similarity=0.140 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCcEEEecCC
Q 029271 94 KEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 139 (196)
Q Consensus 94 ~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PVIgvP~~ 139 (196)
+...+.++++++.+++.+|.+.|-...-+.-.=+....||||+|-.
T Consensus 81 ~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~~~gi~vigiPkT 126 (324)
T TIGR02483 81 DGDDKIVANLKELGLDALIAIGGDGTLGIARRLADKGLPVVGVPKT 126 (324)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHhcCCCEEeeccc
Confidence 4566777777777787777776653322221112345999999986
No 332
>PRK09701 D-allose transporter subunit; Provisional
Probab=51.80 E-value=1.6e+02 Score=25.39 Aligned_cols=85 Identities=13% Similarity=0.145 Sum_probs=51.3
Q ss_pred CCeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhh--h
Q 029271 52 APIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA--A 126 (196)
Q Consensus 52 ~~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvv--A 126 (196)
...|+++....+| ....+.+.+.+++.|+.+.+.....-..++...++++++..++++.||..+.........+ +
T Consensus 24 ~~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~ 103 (311)
T PRK09701 24 AAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARA 103 (311)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 3479999977666 2334566677778887655432222234556667777787788876666655433332322 2
Q ss_pred hccCCcEEEe
Q 029271 127 ANSQILVIRV 136 (196)
Q Consensus 127 ~~t~~PVIgv 136 (196)
-...+||+.+
T Consensus 104 ~~~giPvV~~ 113 (311)
T PRK09701 104 WKKGIYLVNL 113 (311)
T ss_pred HHCCCcEEEe
Confidence 2345788876
No 333
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=51.72 E-value=99 Score=23.68 Aligned_cols=50 Identities=18% Similarity=0.116 Sum_probs=31.3
Q ss_pred eEEEEEcCCCCHHH----HHHHHHHHHHhCCCeEEEEEcccC---------------CchHHHHHHHHHhh
Q 029271 54 IVGIIMESDLDLPV----MNDAARTLSDFGVPYEIKILPPHQ---------------NCKEALSYALSAKE 105 (196)
Q Consensus 54 ~V~IimGS~SD~~~----~~~~~~~l~~~gi~~ev~V~SaHR---------------~p~~~~~~~~~~e~ 105 (196)
+|.||.||...-.. ++.+.+.+++.|+ |+.+...+. .++.+.++.+...+
T Consensus 2 kilii~gS~r~~~~t~~l~~~~~~~l~~~g~--e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~ 70 (152)
T PF03358_consen 2 KILIINGSPRKNSNTRKLAEAVAEQLEEAGA--EVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKE 70 (152)
T ss_dssp EEEEEESSSSTTSHHHHHHHHHHHHHHHTTE--EEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHH
T ss_pred EEEEEECcCCCCCHHHHHHHHHHHHHHHcCC--EEEEEeccccchhhcccccccccCCcHHHHHHHhceec
Confidence 68999999854444 3444455555554 666666665 35566666666655
No 334
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=51.48 E-value=66 Score=28.68 Aligned_cols=67 Identities=15% Similarity=0.081 Sum_probs=46.5
Q ss_pred eEEEEEcCCC----CHHHHHHHHHHHHHhCCCeEEEEEc-------ccCCchHHHHHHHHHhhCCCeEEEEecCCCCc
Q 029271 54 IVGIIMESDL----DLPVMNDAARTLSDFGVPYEIKILP-------PHQNCKEALSYALSAKERGIKIIIVGDGVEAH 120 (196)
Q Consensus 54 ~V~IimGS~S----D~~~~~~~~~~l~~~gi~~ev~V~S-------aHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~ 120 (196)
+|+|+.=|.. +.+..+.+.+.|+.+|..+.+.=.. +.-.-++..++.+.+.+..++.|+++-|+.+.
T Consensus 2 ~I~ivAPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~ 79 (308)
T cd07062 2 TIAVVSPSSGIPGELPHRLERAKKRLENLGFEVVEGPNALKGDKYLSASPEERAEELMAAFADPSIKAIIPTIGGDDS 79 (308)
T ss_pred eEEEEeCCCCCcccCHHHHHHHHHHHHhCCCEEEEecccccccccccCCHHHHHHHHHHHhcCCCCCEEEECCcccCH
Confidence 5777774432 2688899999999999875543221 11233567778777778888999999998653
No 335
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.39 E-value=25 Score=32.01 Aligned_cols=50 Identities=20% Similarity=0.152 Sum_probs=33.7
Q ss_pred EEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCcEEEecCC
Q 029271 84 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 139 (196)
Q Consensus 84 v~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PVIgvP~~ 139 (196)
-.|+..|+.+..+.++.++ ++++|+++|..+-+.+=.=-.-.. ||.|=+.
T Consensus 190 atVtv~hs~T~~l~~~~~~-----ADIvVsAvGkp~~i~~~~ik~gav-VIDvGin 239 (297)
T PRK14168 190 ATVTIVHTRSKNLARHCQR-----ADILIVAAGVPNLVKPEWIKPGAT-VIDVGVN 239 (297)
T ss_pred CEEEEecCCCcCHHHHHhh-----CCEEEEecCCcCccCHHHcCCCCE-EEecCCC
Confidence 4577779888777777653 699999999988776533222222 7777543
No 336
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.36 E-value=61 Score=29.32 Aligned_cols=54 Identities=11% Similarity=0.153 Sum_probs=43.3
Q ss_pred CeEEEEEcCCCC-HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC
Q 029271 53 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 106 (196)
Q Consensus 53 ~~V~IimGS~SD-~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~ 106 (196)
..+.|..|...+ .-+.+...+.++++||.+++.-.+..-+.+++.+.++++.++
T Consensus 33 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (284)
T PRK14170 33 GLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNED 87 (284)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 367777776554 456667788889999999999999998989999999888654
No 337
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=51.23 E-value=35 Score=23.50 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=24.9
Q ss_pred EEcCCCCHHHHHHHHHHHHHhCCCeEEEEEccc
Q 029271 58 IMESDLDLPVMNDAARTLSDFGVPYEIKILPPH 90 (196)
Q Consensus 58 imGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaH 90 (196)
+-+..+ +.+.++.-.|++.|++|++......
T Consensus 4 Ly~~~~--~~~~~v~~~l~~~gl~~~~~~~~~~ 34 (81)
T cd03048 4 LYTHGT--PNGFKVSIMLEELGLPYEIHPVDIS 34 (81)
T ss_pred EEeCCC--CChHHHHHHHHHcCCCcEEEEecCc
Confidence 445554 8999999999999999998776643
No 338
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=51.22 E-value=22 Score=33.33 Aligned_cols=67 Identities=18% Similarity=0.175 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhCCCeE-------------------------EEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCch
Q 029271 67 VMNDAARTLSDFGVPYE-------------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 121 (196)
Q Consensus 67 ~~~~~~~~l~~~gi~~e-------------------------v~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L 121 (196)
+.+-+.+.|+.+|++.+ -.|+..|..+..+.++.++ ++|+|+++|..+-+
T Consensus 214 Tp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T~nl~~~~r~-----ADIVIsAvGkp~~i 288 (364)
T PLN02616 214 TPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRE-----ADIIISAVGQPNMV 288 (364)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCCCCHHHHHhh-----CCEEEEcCCCcCcC
Confidence 34557777788877632 4677789888888887754 69999999998877
Q ss_pred hHhhhhccCCcEEEecCC
Q 029271 122 SGVAAANSQILVIRVPLL 139 (196)
Q Consensus 122 ~gvvA~~t~~PVIgvP~~ 139 (196)
.+=.--.-. =||-|=+.
T Consensus 289 ~~d~vK~GA-vVIDVGIn 305 (364)
T PLN02616 289 RGSWIKPGA-VVIDVGIN 305 (364)
T ss_pred CHHHcCCCC-EEEecccc
Confidence 653322222 27766554
No 339
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=51.09 E-value=2e+02 Score=26.33 Aligned_cols=115 Identities=12% Similarity=0.087 Sum_probs=68.4
Q ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhCC----CeEEEEEcccCCchHHHHHHHHHhh-CCCeEEE-EecCCCCch---h
Q 029271 52 APIVGIIMESDLDLPVMNDAARTLSDFGV----PYEIKILPPHQNCKEALSYALSAKE-RGIKIII-VGDGVEAHL---S 122 (196)
Q Consensus 52 ~~~V~IimGS~SD~~~~~~~~~~l~~~gi----~~ev~V~SaHR~p~~~~~~~~~~e~-~~~~V~I-avAG~sa~L---~ 122 (196)
.++|+||+.+ ---.--+.+.|+.+|. |.|+ .+. -+++...+.++.+.+ .+++.++ .+.|..... .
T Consensus 256 ~~~i~ii~ng---~G~~~~~~D~l~~~g~~~~NPvDl--~g~-~~~e~~~~aL~~l~~d~~vd~vlv~~~~~~~~~~~va 329 (388)
T PRK00696 256 DGNIGCMVNG---AGLAMATMDIIKLYGGEPANFLDV--GGG-ATAERVAEAFKIILSDPNVKAILVNIFGGITRCDVIA 329 (388)
T ss_pred CCcEEEEECC---chHHHHHHHHHHHcCCCcCCeEEe--cCC-CCHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCHHHHH
Confidence 3689999966 3455567778887776 4677 444 788888888877654 3455333 333322211 1
Q ss_pred -Hhhhh--c--cCCcEEEecCCCCCCChhh-hhhhhcCCCCCeeeEEecCChhhHHHHHHHHH
Q 029271 123 -GVAAA--N--SQILVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVL 179 (196)
Q Consensus 123 -gvvA~--~--t~~PVIgvP~~~~~~~G~D-LlS~lqmPsGvpvatV~I~~~~nAA~~AaqIL 179 (196)
+++.. . +.+||+.+ ..+ ...+ ...+++- .|+|+.+. .+++.|+...+++.
T Consensus 330 ~~i~~~~~~~~~~kPvv~~-~~g---~~~~~~~~~L~~-~Gi~ip~f--~~pe~A~~al~~~~ 385 (388)
T PRK00696 330 EGIIAAVKEVGVTVPLVVR-LEG---TNVELGKKILAE-SGLNIIAA--DTLDDAAQKAVEAA 385 (388)
T ss_pred HHHHHHHHhcCCCCcEEEE-eCC---CCHHHHHHHHHH-CCCCceec--CCHHHHHHHHHHHh
Confidence 12211 1 67899544 322 1223 5555552 68666666 89999988877653
No 340
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=50.82 E-value=37 Score=30.37 Aligned_cols=86 Identities=12% Similarity=0.013 Sum_probs=45.1
Q ss_pred CeEEEEEcC--CCCHHHHHHHHHHHHHhCCCeEEEEEcccCCc-hHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--h
Q 029271 53 PIVGIIMES--DLDLPVMNDAARTLSDFGVPYEIKILPPHQNC-KEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--A 127 (196)
Q Consensus 53 ~~V~IimGS--~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p-~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA--~ 127 (196)
.+|+|+.=. ..-.+.++++.+.|++.|+.+.+--..+.... .....+..+...++++++|++.|= +.+=..+- .
T Consensus 6 ~~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGD-Gt~l~~~~~~~ 84 (291)
T PRK02155 6 KTVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGD-GTMLGIGRQLA 84 (291)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCc-HHHHHHHHHhc
Confidence 458888533 33344577788888888876554332221111 000000001112346788877654 44433333 2
Q ss_pred ccCCcEEEecCC
Q 029271 128 NSQILVIRVPLL 139 (196)
Q Consensus 128 ~t~~PVIgvP~~ 139 (196)
.+..|++|+-.-
T Consensus 85 ~~~~pilGIn~G 96 (291)
T PRK02155 85 PYGVPLIGINHG 96 (291)
T ss_pred CCCCCEEEEcCC
Confidence 468899998874
No 341
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=50.69 E-value=1.4e+02 Score=24.46 Aligned_cols=69 Identities=13% Similarity=0.072 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhCC----CeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCcEEEe
Q 029271 66 PVMNDAARTLSDFGV----PYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRV 136 (196)
Q Consensus 66 ~~~~~~~~~l~~~gi----~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PVIgv 136 (196)
...+.+.+.+++.|. ++++-+......++...++++++.+.+++.||... .++.... .......|||.+
T Consensus 15 ~~~~gi~~~~~~~g~~~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vd~iI~~~-~~~~~~~-~~~~~~iPvV~~ 87 (281)
T cd06325 15 AARKGFKDGLKEAGYKEGKNVKIDYQNAQGDQSNLPTIARKFVADKPDLIVAIA-TPAAQAA-ANATKDIPIVFT 87 (281)
T ss_pred HHHHHHHHHHHHhCccCCceEEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcC-cHHHHHH-HHcCCCCCEEEE
Confidence 345677777777775 45666666666777777888888877888777653 3222221 233456788876
No 342
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=50.38 E-value=61 Score=24.96 Aligned_cols=48 Identities=25% Similarity=0.199 Sum_probs=37.5
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHH
Q 029271 54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSA 103 (196)
Q Consensus 54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~ 103 (196)
.|+|+ |.|=-+.|..+++.|..+|+++.+--.--|..+.++.+++.+.
T Consensus 15 ~VVif--SKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~ 62 (104)
T KOG1752|consen 15 PVVIF--SKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKL 62 (104)
T ss_pred CEEEE--ECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHh
Confidence 45555 4577889999999999999998877777887788887776643
No 343
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=50.27 E-value=61 Score=27.25 Aligned_cols=125 Identities=14% Similarity=0.090 Sum_probs=62.8
Q ss_pred ccccCCCCeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhC--CCeEEEEecCCCC
Q 029271 46 LLLAADAPIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKER--GIKIIIVGDGVEA 119 (196)
Q Consensus 46 ~~~~~~~~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~--~~~V~IavAG~sa 119 (196)
++......+|++++|...+. .-.+.-.+.+++.|++.+.. +.+..-.++...+.++++..+ ..+.|++..+..+
T Consensus 146 ~l~~~G~~~I~~l~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a 225 (309)
T PRK11041 146 YLHELGHKRIACIAGPEEMPLCHYRLQGYVQALRRCGITVDPQYIARGDFTFEAGAKALKQLLDLPQPPTAVFCHSDVMA 225 (309)
T ss_pred HHHHcCCceEEEEeCCccccchHHHHHHHHHHHHHcCCCCCHHHeEeCCCCHHHHHHHHHHHHcCCCCCCEEEEcCcHHH
Confidence 33334446899998764332 23445577888889875432 223333455566666665433 2577777543322
Q ss_pred chhHhhhhccCCcEEEecCCCCCCChhh---hhhhhcCCCCCeeeEEecCChhhHHHHHHHHH
Q 029271 120 HLSGVAAANSQILVIRVPLLSEDWSEDD---VINSIRMPSHVQVASVPRNNAKNAALYAVKVL 179 (196)
Q Consensus 120 ~L~gvvA~~t~~PVIgvP~~~~~~~G~D---LlS~lqmPsGvpvatV~I~~~~nAA~~AaqIL 179 (196)
+ |++.++-..- +.+|-.- ..-|+| +.+... | +++||.. +.+.-|..|+++|
T Consensus 226 -~-gv~~al~~~g-~~ip~di-~vvg~D~~~~~~~~~-~---~~~ti~~-~~~~~g~~av~~l 279 (309)
T PRK11041 226 -L-GALSQAKRMG-LRVPQDL-SIIGFDDIDLAQYCD-P---PLTTVAQ-PRYEIGREAMLLL 279 (309)
T ss_pred -H-HHHHHHHHcC-CCCCcce-EEEEeCCchhhhhcC-C---CceEEec-CHHHHHHHHHHHH
Confidence 2 5555553332 1233211 223444 233221 2 3567733 5555555566554
No 344
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=50.20 E-value=99 Score=28.35 Aligned_cols=83 Identities=14% Similarity=0.129 Sum_probs=58.2
Q ss_pred eEEEEE--cCCCCHHHHHHHHHHHHHhCCCeEEEEEcccC------C-chHHHHHHHHHhhCCCeEEEEecCC--CCchh
Q 029271 54 IVGIIM--ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQ------N-CKEALSYALSAKERGIKIIIVGDGV--EAHLS 122 (196)
Q Consensus 54 ~V~Iim--GS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR------~-p~~~~~~~~~~e~~~~~V~IavAG~--sa~L~ 122 (196)
.|+||. ++..+....+++.+.|+.+|..+.+.=....| + -+|..++.+-+....++++.++-|+ |+.|=
T Consensus 12 ~I~iIaPSs~~~~~~~~~~a~~~L~~~G~~v~~~~~i~~~~~~~a~s~~~R~~dL~~af~d~~vk~Il~~rGGygs~rlL 91 (313)
T COG1619 12 EIGIIAPSSGATATDALKRAIQRLENLGFEVVFGEHILRRDQYFAGSDEERAEDLMSAFSDPDVKAILCVRGGYGSNRLL 91 (313)
T ss_pred EEEEEecCcccchHHHHHHHHHHHHHcCCEEEechhhhhccccccCCHHHHHHHHHHHhcCCCCeEEEEcccCCChhhhh
Confidence 677776 44446889999999999999765543222222 1 3788888888888889999999998 55555
Q ss_pred Hhhhhc----cCCcEEEe
Q 029271 123 GVAAAN----SQILVIRV 136 (196)
Q Consensus 123 gvvA~~----t~~PVIgv 136 (196)
+-+-.. .+++.||-
T Consensus 92 p~ld~~~i~~~pKifiGy 109 (313)
T COG1619 92 PYLDYDLIRNHPKIFIGY 109 (313)
T ss_pred hhcchHHHhcCCceEEEe
Confidence 544443 66777764
No 345
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=50.11 E-value=1e+02 Score=22.79 Aligned_cols=67 Identities=21% Similarity=0.240 Sum_probs=41.7
Q ss_pred EEEcCCCCHHHHHHHHHHHHHhCCCeE--------------------EEEEcccCCchHHHHHHHHHhhCCCeEEEEecC
Q 029271 57 IIMESDLDLPVMNDAARTLSDFGVPYE--------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDG 116 (196)
Q Consensus 57 IimGS~SD~~~~~~~~~~l~~~gi~~e--------------------v~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG 116 (196)
.+.|.-+=...++..+..|..+|.++. +=+.|..+..+++.+.++.+.++|++|+.-...
T Consensus 4 ~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~ 83 (128)
T cd05014 4 VVTGVGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGN 83 (128)
T ss_pred EEEeCcHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 344555555667777766666666432 345566667777777777777777766555555
Q ss_pred CCCchhH
Q 029271 117 VEAHLSG 123 (196)
Q Consensus 117 ~sa~L~g 123 (196)
.++-|+.
T Consensus 84 ~~s~la~ 90 (128)
T cd05014 84 PNSTLAK 90 (128)
T ss_pred CCCchhh
Confidence 5555554
No 346
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=50.06 E-value=63 Score=28.69 Aligned_cols=66 Identities=14% Similarity=0.044 Sum_probs=51.4
Q ss_pred eEEEEEcC-CCCHHHHHHHHHHHH-HhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCC
Q 029271 54 IVGIIMES-DLDLPVMNDAARTLS-DFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 119 (196)
Q Consensus 54 ~V~IimGS-~SD~~~~~~~~~~l~-~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa 119 (196)
.|.|-.|. .|+.+..-++...+. ++|++.-.+++.-.++..++.+++..+...|++=|.++.|-..
T Consensus 32 fvsvT~~~~~~~~~~t~~~~~~l~~~~g~~~i~Hltcr~~~~~~l~~~L~~~~~~Gi~niLal~GD~p 99 (281)
T TIGR00677 32 FIDITWGAGGTTAELTLTIASRAQNVVGVETCMHLTCTNMPIEMIDDALERAYSNGIQNILALRGDPP 99 (281)
T ss_pred EEEeccCCCCcchhhHHHHHHHHHHhcCCCeeEEeccCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 56666654 556666555555665 8899999999999999999999999999999977777777554
No 347
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=49.69 E-value=1.2e+02 Score=26.01 Aligned_cols=38 Identities=18% Similarity=0.020 Sum_probs=25.5
Q ss_pred HHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCcEEE
Q 029271 98 SYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIR 135 (196)
Q Consensus 98 ~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PVIg 135 (196)
++.+-.++...+++|+..+..+.++.+.+-.+..|+|-
T Consensus 81 ~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~ 118 (348)
T TIGR01133 81 QARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFH 118 (348)
T ss_pred HHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEE
Confidence 34444556678999998776655555556667788875
No 348
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=49.52 E-value=1e+02 Score=22.69 Aligned_cols=77 Identities=18% Similarity=0.252 Sum_probs=47.9
Q ss_pred EEEcCCCCHHHHHHHHHHHHHhC-CCeE-------------------EEEEcccCCchHHHHHHHHHhhCCCeEEEEecC
Q 029271 57 IIMESDLDLPVMNDAARTLSDFG-VPYE-------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDG 116 (196)
Q Consensus 57 IimGS~SD~~~~~~~~~~l~~~g-i~~e-------------------v~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG 116 (196)
.+.|.-+-...++.+...|..+| +++. +=+.|......++.+.++.+.++|++|+.--..
T Consensus 3 ~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~ 82 (126)
T cd05008 3 LIVGCGTSYHAALVAKYLLERLAGIPVEVEAASEFRYRRPLLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVAITNV 82 (126)
T ss_pred EEEEccHHHHHHHHHHHHHHHhcCCceEEEehhHhhhcCCCCCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 35566666777777777777775 5432 345666777778888888888888765544444
Q ss_pred CCCchhHhhhhccCCcEEEecC
Q 029271 117 VEAHLSGVAAANSQILVIRVPL 138 (196)
Q Consensus 117 ~sa~L~gvvA~~t~~PVIgvP~ 138 (196)
..+-|+. ..++ +|-+|.
T Consensus 83 ~~s~la~----~ad~-~l~~~~ 99 (126)
T cd05008 83 VGSTLAR----EADY-VLYLRA 99 (126)
T ss_pred CCChHHH----hCCE-EEEecC
Confidence 4444443 3333 444554
No 349
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=49.51 E-value=80 Score=29.07 Aligned_cols=64 Identities=11% Similarity=0.106 Sum_probs=51.0
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHHHh---CCCeEEEEEcccCCch-----------HHHHHHHHHhhCCCeEEEEecCC
Q 029271 54 IVGIIMESDLDLPVMNDAARTLSDF---GVPYEIKILPPHQNCK-----------EALSYALSAKERGIKIIIVGDGV 117 (196)
Q Consensus 54 ~V~IimGS~SD~~~~~~~~~~l~~~---gi~~ev~V~SaHR~p~-----------~~~~~~~~~e~~~~~V~IavAG~ 117 (196)
+..+|-|=..|.+.+++..+.++.+ |..+.+.+.-.|..++ ++.+|.+.+++.|+.|.|--..+
T Consensus 252 ry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G 329 (347)
T PRK14453 252 AYIMLEGVNDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVRTQFG 329 (347)
T ss_pred EEEeECCCCCCHHHHHHHHHHHhhccccCCcceEEEecCCCCCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEeCCCC
Confidence 4667778888899999999999988 5578999999998754 37788888888888887754433
No 350
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=49.29 E-value=91 Score=28.75 Aligned_cols=60 Identities=8% Similarity=0.106 Sum_probs=46.8
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCC---------chHHHHHHHHHhhCCCeEEEE
Q 029271 54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQN---------CKEALSYALSAKERGIKIIIV 113 (196)
Q Consensus 54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~---------p~~~~~~~~~~e~~~~~V~Ia 113 (196)
+..+|=|=..+.+++++.++.|+.++..+.+.+.-.|.. .+++.++.+.+++.|+.|.|=
T Consensus 256 eyvLIpGvNDs~e~a~~La~~l~~l~~~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR 324 (348)
T PRK14467 256 EYVLIKGVNDSPEDALRLAQLIGKNKKKFKVNLIPFNPDPELPYERPELERVYKFQKILWDNGISTFVR 324 (348)
T ss_pred EEEEECCccCCHHHHHHHHHHHhcCCCceEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEe
Confidence 356666888888999999999998865678888888863 356777777777888887765
No 351
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=48.96 E-value=1.3e+02 Score=26.28 Aligned_cols=33 Identities=24% Similarity=0.198 Sum_probs=16.3
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhC-CC-eEEEEEc
Q 029271 54 IVGIIMESDLDLPVMNDAARTLSDFG-VP-YEIKILP 88 (196)
Q Consensus 54 ~V~IimGS~SD~~~~~~~~~~l~~~g-i~-~ev~V~S 88 (196)
.++=|+|+ |.+-..++++.++++| .. .|+.+.+
T Consensus 94 ~i~si~g~--~~~~~~~~a~~~~~aG~~D~iElN~~c 128 (301)
T PRK07259 94 IIANVAGS--TEEEYAEVAEKLSKAPNVDAIELNISC 128 (301)
T ss_pred EEEEeccC--CHHHHHHHHHHHhccCCcCEEEEECCC
Confidence 34444443 3445555555666665 43 4554443
No 352
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=48.88 E-value=51 Score=22.72 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEc
Q 029271 65 LPVMNDAARTLSDFGVPYEIKILP 88 (196)
Q Consensus 65 ~~~~~~~~~~l~~~gi~~ev~V~S 88 (196)
-+.|.+++..|++.|++|++.-.+
T Consensus 10 sp~~~kv~~~L~~~gi~y~~~~v~ 33 (77)
T cd03041 10 SPFCRLVREVLTELELDVILYPCP 33 (77)
T ss_pred CchHHHHHHHHHHcCCcEEEEECC
Confidence 378999999999999999985443
No 353
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=48.85 E-value=62 Score=25.04 Aligned_cols=65 Identities=9% Similarity=0.015 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCC----CchhHhhhhccCCcEE
Q 029271 68 MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE----AHLSGVAAANSQILVI 134 (196)
Q Consensus 68 ~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~s----a~L~gvvA~~t~~PVI 134 (196)
..-++..|+++|..... ..-..-.++.+.+.++++-++ ++++|+..|.+ .+.+-++.......+-
T Consensus 21 ~~~l~~~l~~~G~~v~~-~~~v~Dd~~~i~~~i~~~~~~-~DlvittGG~g~g~~D~t~~ai~~~g~~~~~ 89 (133)
T cd00758 21 GPALEALLEDLGCEVIY-AGVVPDDADSIRAALIEASRE-ADLVLTTGGTGVGRRDVTPEALAELGEREAH 89 (133)
T ss_pred HHHHHHHHHHCCCEEEE-eeecCCCHHHHHHHHHHHHhc-CCEEEECCCCCCCCCcchHHHHHHhcCEEec
Confidence 34566678999976432 223556777777777666444 78888876654 4567777665544444
No 354
>PRK10927 essential cell division protein FtsN; Provisional
Probab=48.62 E-value=1.4e+02 Score=27.66 Aligned_cols=64 Identities=17% Similarity=0.028 Sum_probs=52.0
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEE--------EEEcccCCchHHHHHHHHHhhCCC-eEEEEecC
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEI--------KILPPHQNCKEALSYALSAKERGI-KIIIVGDG 116 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev--------~V~SaHR~p~~~~~~~~~~e~~~~-~V~IavAG 116 (196)
.+-.|=+||.++.+-++..+.-|...|++..+ -+.+..-+-+++.+....+.+.|+ .+|+..+|
T Consensus 246 ~~~~VQvGSF~n~~nAE~LrAkLa~~G~~A~I~~~g~~~RVrVGPf~sr~eAe~a~~rLk~aGis~ci~~a~g 318 (319)
T PRK10927 246 RRWMVQCGSFRGAEQAETVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNCIRLAAG 318 (319)
T ss_pred CcEEEEeCccCCHHHHHHHHHHHHHcCCeeEEccCCcEEEEEeCCCCCHHHHHHHHHHHHHCCCCceeeccCC
Confidence 57899999999999999999999999986433 123467788899999999999888 56666555
No 355
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=48.50 E-value=1.4e+02 Score=26.91 Aligned_cols=53 Identities=23% Similarity=0.231 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHH-HhC-----CCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEec
Q 029271 62 DLDLPVMNDAARTLS-DFG-----VPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 115 (196)
Q Consensus 62 ~SD~~~~~~~~~~l~-~~g-----i~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavA 115 (196)
..|.+.++++.+.++ ..+ +|.-+++. ..-+.+++.++++..++.|++-|+...
T Consensus 179 ~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~-~~~~~~~~~~ia~~l~~aGad~I~~~n 237 (327)
T cd04738 179 LQGKEALRELLTAVKEERNKLGKKVPLLVKIA-PDLSDEELEDIADVALEHGVDGIIATN 237 (327)
T ss_pred ccCHHHHHHHHHHHHHHHhhcccCCCeEEEeC-CCCCHHHHHHHHHHHHHcCCcEEEEEC
Confidence 466777777766665 344 88888886 444445788888888888887666544
No 356
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=48.42 E-value=72 Score=24.31 Aligned_cols=85 Identities=12% Similarity=0.134 Sum_probs=53.1
Q ss_pred eEEEEEcCCCCHHHHH-HHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCc
Q 029271 54 IVGIIMESDLDLPVMN-DAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQIL 132 (196)
Q Consensus 54 ~V~IimGS~SD~~~~~-~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~P 132 (196)
+|.++||+-.=-..+- +.....++.|+++++.-.| .+...+ +...+++|+..--..-.+.-+-......|
T Consensus 5 kIllvC~~G~sTSll~~km~~~~~~~gi~~~V~A~~----~~~~~~-----~~~~~DviLl~Pqi~~~~~~i~~~~~~~p 75 (106)
T PRK10499 5 HIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFP----ETLAGE-----KGQNADVVLLGPQIAYMLPEIQRLLPNKP 75 (106)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHCCCCEEEEEee----cchhhc-----cccCCCEEEECHHHHHHHHHHHhhcCCCC
Confidence 6888886555455544 8888889999999975433 122211 23346888886555556665533334479
Q ss_pred EEEecCCC-CCCChhh
Q 029271 133 VIRVPLLS-EDWSEDD 147 (196)
Q Consensus 133 VIgvP~~~-~~~~G~D 147 (196)
|+.++... +.++|-.
T Consensus 76 V~~I~~~~Yg~~dg~~ 91 (106)
T PRK10499 76 VEVIDSLLYGKVDGLG 91 (106)
T ss_pred EEEEChHhhhcCCHHH
Confidence 99998764 3345533
No 357
>PF13989 YejG: YejG-like protein
Probab=48.31 E-value=36 Score=26.75 Aligned_cols=68 Identities=19% Similarity=0.332 Sum_probs=43.5
Q ss_pred ceecccccCCccchhhhhhhhhhhhccccCCCCCccccccccccccccCCCCeEEEEE---cCCCCHHHHHHHHHHHHHh
Q 029271 2 IHLSVNHQLSSRKKTLMVTLQLLRCQIVYVPAACPSTKSCLPRFLLLAADAPIVGIIM---ESDLDLPVMNDAARTLSDF 78 (196)
Q Consensus 2 ~~~~~~~~~~sgdk~l~~dkq~yr~l~~vt~~~~~~vk~v~~~~~~~~~~~~~V~Iim---GS~SD~~~~~~~~~~l~~~ 78 (196)
++|||-|+|| |.||=+.--+-...+.+ ++... ..++..|+.=- .+.+.+++|++....|.++
T Consensus 1 lQLSVVHRLP----------qsYRWlsG~~G~kVEp~----p~~~~-~~~n~LigLkLLShdg~~aw~im~~L~~sL~ei 65 (106)
T PF13989_consen 1 LQLSVVHRLP----------QSYRWLSGFAGVKVEPI----PLNDA-DEDNDLIGLKLLSHDGESAWQIMQQLSQSLAEI 65 (106)
T ss_pred CccceEeeCC----------ccceeccCCcCceeeec----CCcCc-CcccceEEEEeeCCCChHHHHHHHHHHHHHHHh
Confidence 4789999987 67888876554333222 11111 11223454432 4567899999999999999
Q ss_pred CCCeEE
Q 029271 79 GVPYEI 84 (196)
Q Consensus 79 gi~~ev 84 (196)
.|.|.+
T Consensus 66 qv~~~v 71 (106)
T PF13989_consen 66 QVDCAV 71 (106)
T ss_pred cccceE
Confidence 998764
No 358
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.26 E-value=29 Score=31.38 Aligned_cols=50 Identities=14% Similarity=0.159 Sum_probs=33.8
Q ss_pred EEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCcEEEecCC
Q 029271 84 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 139 (196)
Q Consensus 84 v~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PVIgvP~~ 139 (196)
-.|+..|..+..+.++.++ ++++|+++|..+-+.+=.--.-. =||.|=+.
T Consensus 182 AtVtichs~T~nl~~~~~~-----ADIvI~AvGk~~~i~~~~ik~ga-iVIDvGin 231 (282)
T PRK14182 182 ATVTIAHSRTADLAGEVGR-----ADILVAAIGKAELVKGAWVKEGA-VVIDVGMN 231 (282)
T ss_pred CEEEEeCCCCCCHHHHHhh-----CCEEEEecCCcCccCHHHcCCCC-EEEEeece
Confidence 3677779888888777653 69999999997766543222222 27777655
No 359
>PF02514 CobN-Mg_chel: CobN/Magnesium Chelatase; InterPro: IPR003672 This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN may play a role in cobalt insertion reactions and is implicated in the conversion of precorrin-2 to cobyrinic acid in cobalamin biosynthesis []. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis as the third subunit of light-independent protochlorophyllide reductase in bacteria and plants [].; GO: 0009058 biosynthetic process
Probab=47.90 E-value=1.1e+02 Score=32.64 Aligned_cols=89 Identities=16% Similarity=0.172 Sum_probs=59.0
Q ss_pred CCCeEEEEEcCC----CCHHHHHHHHHHHHHhCCCeEEEE-EcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhH--
Q 029271 51 DAPIVGIIMESD----LDLPVMNDAARTLSDFGVPYEIKI-LPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG-- 123 (196)
Q Consensus 51 ~~~~V~IimGS~----SD~~~~~~~~~~l~~~gi~~ev~V-~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~g-- 123 (196)
..|.|+|+.... .|..+.....+.|++-|+.+-.-. .|-....+.+.++...-.+..++++|...+.+..-++
T Consensus 70 ~~P~VgIlfyrs~~~~g~~~~vdaLI~~LE~~G~nvipvf~~~~~~~~~~i~~~f~~~g~~~vDaIIn~~~f~l~~~~~~ 149 (1098)
T PF02514_consen 70 NRPTVGILFYRSYWLSGNTAVVDALIRALEERGLNVIPVFCSSGPDSQEAIEDYFMDDGKPRVDAIINLTGFSLGGGPAG 149 (1098)
T ss_pred CCCEEEEEeehhhhhcCCcHHHHHHHHHHHHCCCeEEEEEecCccchHHHHHHHHhhcCCCCceEEEEcCccccCCCCcc
Confidence 468999999653 588999999999999999754333 2323444556666543333456899988877544332
Q ss_pred -hhh--hccCCcEEEecCC
Q 029271 124 -VAA--ANSQILVIRVPLL 139 (196)
Q Consensus 124 -vvA--~~t~~PVIgvP~~ 139 (196)
-.. -.-..|||..-+.
T Consensus 150 ~~~~~L~~LnVPVlq~i~~ 168 (1098)
T PF02514_consen 150 GAIELLKELNVPVLQAITL 168 (1098)
T ss_pred hhHHHHHHCCCCEEEeecc
Confidence 122 3468899987765
No 360
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=47.82 E-value=28 Score=34.75 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=34.3
Q ss_pred CchHHHHHHHHHhhCCCeEEEEecCCCC-chhHhhhh-----ccCCcEEEecCC
Q 029271 92 NCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAA-----NSQILVIRVPLL 139 (196)
Q Consensus 92 ~p~~~~~~~~~~e~~~~~V~IavAG~sa-~L~gvvA~-----~t~~PVIgvP~~ 139 (196)
+++...++++.+++.+++.+|.+.|-.. .-+-.++- +...+|||||-.
T Consensus 158 ~~e~~~~i~e~l~~l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIPKT 211 (610)
T PLN03028 158 TTEQVNAALAACEALKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVPVT 211 (610)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEecee
Confidence 3466788888999999988887777633 33334443 358999999975
No 361
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.75 E-value=56 Score=29.54 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=43.1
Q ss_pred CeEEEEEcCCCC-HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC
Q 029271 53 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 106 (196)
Q Consensus 53 ~~V~IimGS~SD-~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~ 106 (196)
..+.|..|...+ .-+.+...+.++++|+.+++.-...+-+.+++.+.++++.++
T Consensus 33 ~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~D 87 (281)
T PRK14183 33 GLAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPSTISQKEILETIAMMNNN 87 (281)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 367777776644 556667788889999999999888888889999999888654
No 362
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=47.69 E-value=65 Score=29.35 Aligned_cols=54 Identities=17% Similarity=0.125 Sum_probs=43.3
Q ss_pred CeEEEEEcCCCCH-HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC
Q 029271 53 PIVGIIMESDLDL-PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 106 (196)
Q Consensus 53 ~~V~IimGS~SD~-~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~ 106 (196)
.++.|..|...+- -+.+-..+.|+++||.++..-.+..-+.+++.+.++++.++
T Consensus 41 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D 95 (299)
T PLN02516 41 GLAVVIVGSRKDSQTYVNMKRKACAEVGIKSFDVDLPENISEAELISKVHELNAN 95 (299)
T ss_pred eEEEEEECCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3677777766554 45666778889999999999888999999999999988654
No 363
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=47.58 E-value=1.4e+02 Score=24.35 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=14.1
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCC
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGV 80 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi 80 (196)
.+.++|+|+++ .+...+.+.|-+.|.
T Consensus 7 ~~~vlItGasg--~iG~~la~~l~~~G~ 32 (262)
T PRK13394 7 GKTAVVTGAAS--GIGKEIALELARAGA 32 (262)
T ss_pred CCEEEEECCCC--hHHHHHHHHHHHCCC
Confidence 35666676666 344445555554454
No 364
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=47.57 E-value=1.5e+02 Score=23.84 Aligned_cols=78 Identities=13% Similarity=0.109 Sum_probs=50.0
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEc---ccCCchHHHHHHHHH-hhCCCeEEEEecC-CCCchhHhhhhc
Q 029271 54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSA-KERGIKIIIVGDG-VEAHLSGVAAAN 128 (196)
Q Consensus 54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~S---aHR~p~~~~~~~~~~-e~~~~~V~IavAG-~sa~L~gvvA~~ 128 (196)
.+++++|...+. .+.+.+..+|..--+.+.. .+..|+...+.+.++ +..+.+++++.+- ....|++-+|..
T Consensus 38 v~~v~~G~~~~~----~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t~~g~~la~rlA~~ 113 (181)
T cd01985 38 VTALVIGPPAAE----VALREALAMGADKVLLVEDPALAGYDPEATAKALAALIKKEKPDLILAGATSIGKQLAPRVAAL 113 (181)
T ss_pred EEEEEECChHHH----HHHHHHHHhCCCEEEEEecCcccCCChHHHHHHHHHHHHHhCCCEEEECCcccccCHHHHHHHH
Confidence 678888875442 2223445789985555542 456677766766655 4445665555544 456899999999
Q ss_pred cCCcEEE
Q 029271 129 SQILVIR 135 (196)
Q Consensus 129 t~~PVIg 135 (196)
...|++.
T Consensus 114 L~~~~vs 120 (181)
T cd01985 114 LGVPQIS 120 (181)
T ss_pred hCCCcce
Confidence 8888663
No 365
>PTZ00062 glutaredoxin; Provisional
Probab=47.51 E-value=1.1e+02 Score=26.17 Aligned_cols=74 Identities=14% Similarity=0.029 Sum_probs=47.2
Q ss_pred CeEEEEEcCC---CCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhcc
Q 029271 53 PIVGIIMESD---LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS 129 (196)
Q Consensus 53 ~~V~IimGS~---SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t 129 (196)
..|.++|=|+ +.=+.|.++...|++.|++|+..=.. .. ++..+.++++ ++..
T Consensus 113 ~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~--~d-~~~~~~l~~~----------------------sg~~ 167 (204)
T PTZ00062 113 HKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIF--ED-PDLREELKVY----------------------SNWP 167 (204)
T ss_pred CCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcC--CC-HHHHHHHHHH----------------------hCCC
Confidence 4688888644 46788889999999999998743322 22 3333333332 3446
Q ss_pred CCcEEEecCCCCCCChhh-hhhhhc
Q 029271 130 QILVIRVPLLSEDWSEDD-VINSIR 153 (196)
Q Consensus 130 ~~PVIgvP~~~~~~~G~D-LlS~lq 153 (196)
++|.|=+ .+.-.+|.| +..+.+
T Consensus 168 TvPqVfI--~G~~IGG~d~l~~l~~ 190 (204)
T PTZ00062 168 TYPQLYV--NGELIGGHDIIKELYE 190 (204)
T ss_pred CCCeEEE--CCEEEcChHHHHHHHH
Confidence 6777652 233457888 777665
No 366
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=47.43 E-value=3.4e+02 Score=28.06 Aligned_cols=112 Identities=12% Similarity=0.085 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCC-chhHhhhhccCCcEEEecCCCCCCCh
Q 029271 67 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAANSQILVIRVPLLSEDWSE 145 (196)
Q Consensus 67 ~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa-~L~gvvA~~t~~PVIgvP~~~~~~~G 145 (196)
..++.....+++|+.-.++..+.+-......++...+ ....+|||.-+=-++ +|.-+=|-.+-.|||+ ++.+|
T Consensus 604 ~i~~L~~la~~~gL~g~V~flG~~~~~~~~~elyr~i-Ad~adVfV~PS~~EpFGLvvLEAMAcGlPVVA-----T~~GG 677 (784)
T TIGR02470 604 EIEKMHNLIDQYQLHGQIRWIGAQLNRVRNGELYRYI-ADTKGIFVQPALYEAFGLTVLEAMTCGLPTFA-----TRFGG 677 (784)
T ss_pred HHHHHHHHHHHhCCCCeEEEccCcCCcccHHHHHHHh-hccCcEEEECCcccCCCHHHHHHHHcCCCEEE-----cCCCC
Confidence 5566777778999987888887654444544443322 123468887765544 6777777778888887 23445
Q ss_pred hh-hhhhhcCCCCCeeeEEecCChhhHHHHHHHHHc-----cCCHHHHHHHHH
Q 029271 146 DD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLG-----IADEDLLERIRK 192 (196)
Q Consensus 146 ~D-LlS~lqmPsGvpvatV~I~~~~nAA~~AaqILa-----~~d~~l~~kl~~ 192 (196)
.. +.. .|.-=..| .+.+..-+|..|.. +.|+..|+++..
T Consensus 678 ~~EiV~-----dg~tGfLV---dp~D~eaLA~aL~~ll~kll~dp~~~~~ms~ 722 (784)
T TIGR02470 678 PLEIIQ-----DGVSGFHI---DPYHGEEAAEKIVDFFEKCDEDPSYWQKISQ 722 (784)
T ss_pred HHHHhc-----CCCcEEEe---CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 43 321 22211112 33344444444443 479999988754
No 367
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=47.31 E-value=1.5e+02 Score=23.96 Aligned_cols=79 Identities=8% Similarity=0.055 Sum_probs=43.3
Q ss_pred EEEEEcCC-CC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccC
Q 029271 55 VGIIMESD-LD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQ 130 (196)
Q Consensus 55 V~IimGS~-SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~ 130 (196)
|++|.-+. ++ ....+.+.+.++++|+...+ ...=..+++..++++.....+++-+|........+... ...-.
T Consensus 2 ig~v~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~~~dgiii~~~~~~~~~~~-~~~~~ 78 (269)
T cd06288 2 IGLISDEIATTPFAVEIILGAQDAAREHGYLLLV--VNTGGDDELEAEAVEALLDHRVDGIIYATMYHREVTLP-PELLS 78 (269)
T ss_pred eEEEeCCCCCCccHHHHHHHHHHHHHHCCCEEEE--EeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCChhHHH-HHhcC
Confidence 66666554 33 23455677788889865443 33333455666777777777886454443322333222 12234
Q ss_pred CcEEEe
Q 029271 131 ILVIRV 136 (196)
Q Consensus 131 ~PVIgv 136 (196)
.||+.+
T Consensus 79 ipvv~~ 84 (269)
T cd06288 79 VPTVLL 84 (269)
T ss_pred CCEEEE
Confidence 677654
No 368
>PRK14072 6-phosphofructokinase; Provisional
Probab=47.29 E-value=26 Score=33.07 Aligned_cols=47 Identities=15% Similarity=0.101 Sum_probs=32.5
Q ss_pred CchHHHHHHHHHhhCCCeEEEEecCCCCchhH--hhhh-----ccCCcEEEecCC
Q 029271 92 NCKEALSYALSAKERGIKIIIVGDGVEAHLSG--VAAA-----NSQILVIRVPLL 139 (196)
Q Consensus 92 ~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~g--vvA~-----~t~~PVIgvP~~ 139 (196)
+++...++++++++.+++.+|++.|- +.+-+ -++- ...+||||||-.
T Consensus 88 ~~~~~~~~~~~l~~~~Id~LivIGGd-gS~~~a~~L~e~~~~~g~~i~vIgIPkT 141 (416)
T PRK14072 88 DRAEYERLLEVFKAHDIGYFFYNGGN-DSMDTALKVSQLAKKMGYPIRCIGIPKT 141 (416)
T ss_pred ChHHHHHHHHHHHHcCCCEEEEECCh-HHHHHHHHHHHHHHHhCCCceEEEeeec
Confidence 35677888889999999888888664 23322 2322 235899999975
No 369
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.95 E-value=58 Score=29.60 Aligned_cols=54 Identities=9% Similarity=0.118 Sum_probs=42.0
Q ss_pred CeEEEEEcCCCCH-HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC
Q 029271 53 PIVGIIMESDLDL-PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 106 (196)
Q Consensus 53 ~~V~IimGS~SD~-~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~ 106 (196)
.++.|..|...+- -+.+...+.++++||.+++.-.+..-+.+++.+.++++.++
T Consensus 33 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (293)
T PRK14185 33 HLAAILVGHDGGSETYVANKVKACEECGFKSSLIRYESDVTEEELLAKVRELNQD 87 (293)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3667777765544 45566678899999999998888888888999999888654
No 370
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=46.63 E-value=45 Score=24.56 Aligned_cols=39 Identities=15% Similarity=0.108 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEE-cccCCchHHHHHHH
Q 029271 63 LDLPVMNDAARTLSDFGVPYEIKIL-PPHQNCKEALSYAL 101 (196)
Q Consensus 63 SD~~~~~~~~~~l~~~gi~~ev~V~-SaHR~p~~~~~~~~ 101 (196)
+.=+.|+++.+.|++.|++|+..=. .-.-+.+++.++..
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~ 46 (105)
T cd02977 7 PNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLA 46 (105)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHH
Confidence 4468999999999999999986544 33445566666654
No 371
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=46.62 E-value=47 Score=26.27 Aligned_cols=108 Identities=16% Similarity=0.225 Sum_probs=63.5
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcc---cCCchHHHHHHHHH-hhCCCeEEEEecCC-CCchhHhhhh
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPP---HQNCKEALSYALSA-KERGIKIIIVGDGV-EAHLSGVAAA 127 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~Sa---HR~p~~~~~~~~~~-e~~~~~V~IavAG~-sa~L~gvvA~ 127 (196)
..+++++|... ...+.+++.|..+|..--+.+... |-.|+...+.+.++ ++.+.++|+..+.. ...|++.+|.
T Consensus 34 ~v~av~~G~~~--~~~~~l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~ 111 (164)
T PF01012_consen 34 EVTAVVLGPAE--EAAEALRKALAKYGADKVYHIDDPALAEYDPEAYADALAELIKEEGPDLVLFGSTSFGRDLAPRLAA 111 (164)
T ss_dssp EEEEEEEETCC--CHHHHHHHHHHSTTESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHH
T ss_pred eEEEEEEecch--hhHHHHhhhhhhcCCcEEEEecCccccccCHHHHHHHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHH
Confidence 46788888423 344556677788999866666543 44677666655544 44567766666532 4459999999
Q ss_pred ccCCcEEEecCC----CC-------CCChhhhhhhhcCCCCCeeeEE
Q 029271 128 NSQILVIRVPLL----SE-------DWSEDDVINSIRMPSHVQVASV 163 (196)
Q Consensus 128 ~t~~PVIgvP~~----~~-------~~~G~DLlS~lqmPsGvpvatV 163 (196)
....|.+.=-+. .+ .++|. ....+++|++..|.||
T Consensus 112 ~L~~~~v~~v~~l~~~~~~~~~~r~~~gG~-~~~~~~~~~~~~v~tv 157 (164)
T PF01012_consen 112 RLGAPLVTDVTDLEVEDGGLVVTRPVYGGK-VVATVRLPSPPAVVTV 157 (164)
T ss_dssp HHT-EEEEEEEEEEEETTEEEEEEEETTTT-EEEEEECSSSSEEEEE
T ss_pred HhCCCccceEEEEEECCCeEEEEEECCCCE-EEEEEECCCCCEEEEE
Confidence 999998753332 11 12333 4455666655556665
No 372
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=46.61 E-value=68 Score=28.38 Aligned_cols=82 Identities=15% Similarity=0.130 Sum_probs=49.0
Q ss_pred EEEEEcC--CCCHHHHHHHHHHHHHhCCCeEEEEEc--ccC----Cc-hHHHHHHHHHhhCCCeEEEEecCCCCch--hH
Q 029271 55 VGIIMES--DLDLPVMNDAARTLSDFGVPYEIKILP--PHQ----NC-KEALSYALSAKERGIKIIIVGDGVEAHL--SG 123 (196)
Q Consensus 55 V~IimGS--~SD~~~~~~~~~~l~~~gi~~ev~V~S--aHR----~p-~~~~~~~~~~e~~~~~V~IavAG~sa~L--~g 123 (196)
|+|+.=| ..|.+..+++.+.|+++|....+.=.. .|. ++ +|..++.+.+++..++.|++.-|+.+.. =.
T Consensus 1 I~ivaPS~~~~~~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~ags~~~Ra~dL~~a~~d~~i~aI~~~rGGyg~~rlL~ 80 (284)
T PF02016_consen 1 IGIVAPSLSPIDPERLERGIKRLESWGFKVVVGPHVFKRDGYLAGSDEERAEDLNEAFADPEIDAIWCARGGYGANRLLP 80 (284)
T ss_dssp EEEE-SSHHHHCHHHHHHHHHHHHHTTEEEEE-TTTTS-BTTBSS-HHHHHHHHHHHHHSTTEEEEEES--SS-GGGGGG
T ss_pred CEEEeCCCCccCHHHHHHHHHHHHhCCCEEEECCcccccCCCcCCCHHHHHHHHHHHhcCCCCCEEEEeeccccHHHHHh
Confidence 5666644 568899999999999999865543111 111 22 3555666667777789999999986542 22
Q ss_pred -----hhhhccCCcEEEec
Q 029271 124 -----VAAANSQILVIRVP 137 (196)
Q Consensus 124 -----vvA~~t~~PVIgvP 137 (196)
.+..+ ++++||..
T Consensus 81 ~ld~~~i~~~-pK~~iGyS 98 (284)
T PF02016_consen 81 YLDYDAIRKN-PKIFIGYS 98 (284)
T ss_dssp GCHHHHHHHS-G-EEEE-G
T ss_pred cccccccccC-CCEEEEec
Confidence 34444 78888853
No 373
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=46.03 E-value=2.3e+02 Score=25.58 Aligned_cols=49 Identities=20% Similarity=0.199 Sum_probs=34.5
Q ss_pred CCCCHH-HHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEE
Q 029271 61 SDLDLP-VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 113 (196)
Q Consensus 61 S~SD~~-~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~Ia 113 (196)
+..|+. ..+.++.+.+.+.+|.-++..+.--+ .+.++..++.|++.|++
T Consensus 159 ~~~df~~~~~~i~~l~~~~~vPVivK~~g~g~s----~~~a~~l~~~Gvd~I~v 208 (326)
T cd02811 159 GDRDFRGWLERIEELVKALSVPVIVKEVGFGIS----RETAKRLADAGVKAIDV 208 (326)
T ss_pred CCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCC----HHHHHHHHHcCCCEEEE
Confidence 556775 56788888889999999988764333 34555666778876664
No 374
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=45.95 E-value=99 Score=29.12 Aligned_cols=54 Identities=11% Similarity=0.154 Sum_probs=41.2
Q ss_pred CeEEEEEcCCC-CHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC
Q 029271 53 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 106 (196)
Q Consensus 53 ~~V~IimGS~S-D~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~ 106 (196)
.++.|+.|... +.-+.+...+.|+++||.++..-....-+.+++.++++++.++
T Consensus 105 ~LaiIlvG~dpaS~~Yv~~k~K~~e~~GI~~~~~~lpe~~te~ell~~I~~LN~D 159 (364)
T PLN02616 105 GLAVILVGDRKDSATYVRNKKKACDSVGINSFEVRLPEDSTEQEVLKFISGFNND 159 (364)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 36777778664 4556666778999999998877666777777899999888654
No 375
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=45.90 E-value=1.1e+02 Score=27.99 Aligned_cols=38 Identities=26% Similarity=0.428 Sum_probs=27.9
Q ss_pred CCCeEEEEEccc-----CCchHHHHHHHHHhhCCCeEEEEecC
Q 029271 79 GVPYEIKILPPH-----QNCKEALSYALSAKERGIKIIIVGDG 116 (196)
Q Consensus 79 gi~~ev~V~SaH-----R~p~~~~~~~~~~e~~~~~V~IavAG 116 (196)
+.+.-+|+.... .++++..++++.+++.|++.|-.-.|
T Consensus 207 ~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g 249 (337)
T PRK13523 207 DGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSG 249 (337)
T ss_pred CCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 557777877533 36788899999999989876665555
No 376
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=45.89 E-value=30 Score=34.13 Aligned_cols=48 Identities=15% Similarity=0.140 Sum_probs=34.1
Q ss_pred CchHHHHHHHHHhhCCCeEEEEecCC-CCchhHhhhh-----ccCCcEEEecCC
Q 029271 92 NCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAAA-----NSQILVIRVPLL 139 (196)
Q Consensus 92 ~p~~~~~~~~~~e~~~~~V~IavAG~-sa~L~gvvA~-----~t~~PVIgvP~~ 139 (196)
+++...++++..++.+++.+|.+.|- |+.-+-.++- +...||||||-.
T Consensus 149 ~~e~~~~i~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIPkT 202 (555)
T PRK07085 149 TEEQKEACLETVKKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKT 202 (555)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEeee
Confidence 45677888999999999877777665 3223333432 358999999975
No 377
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=45.88 E-value=1.2e+02 Score=26.58 Aligned_cols=66 Identities=14% Similarity=0.037 Sum_probs=48.2
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEE--cccC-CchHHHHHHHHHhhCCCeEEEEecCCCCc
Q 029271 54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKIL--PPHQ-NCKEALSYALSAKERGIKIIIVGDGVEAH 120 (196)
Q Consensus 54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~--SaHR-~p~~~~~~~~~~e~~~~~V~IavAG~sa~ 120 (196)
.+.-+.-..||++.++++.+..++.|..+...+. ...| +++.+.++++++++.|++.| .++=..+.
T Consensus 106 ~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i-~l~DT~G~ 174 (275)
T cd07937 106 DIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSI-CIKDMAGL 174 (275)
T ss_pred CEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEE-EEcCCCCC
Confidence 4445566889999999999999999987776663 2344 46888889999999888643 34444443
No 378
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.78 E-value=32 Score=31.28 Aligned_cols=63 Identities=14% Similarity=0.154 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCcEEEecCC
Q 029271 67 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 139 (196)
Q Consensus 67 ~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PVIgvP~~ 139 (196)
+.+..+..|..-| ..|+..|..+..+.++.++ ++++|++.|..+-+.+=.--.-.. ||-|=+.
T Consensus 170 VGkPla~lL~~~~----atVtv~hs~T~~l~~~~~~-----ADIvIsAvGkp~~i~~~~ik~gav-VIDvGin 232 (297)
T PRK14186 170 VGKPLALMLLAAN----ATVTIAHSRTQDLASITRE-----ADILVAAAGRPNLIGAEMVKPGAV-VVDVGIH 232 (297)
T ss_pred chHHHHHHHHHCC----CEEEEeCCCCCCHHHHHhh-----CCEEEEccCCcCccCHHHcCCCCE-EEEeccc
Confidence 3344444444333 3566678888888777664 699999999998776433222222 7777654
No 379
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=45.64 E-value=1.2e+02 Score=26.64 Aligned_cols=45 Identities=7% Similarity=0.070 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcccCCc-hHHHHHHHHHhhCCCeEE
Q 029271 67 VMNDAARTLSDFGVPYEIKILPPHQNC-KEALSYALSAKERGIKII 111 (196)
Q Consensus 67 ~~~~~~~~l~~~gi~~ev~V~SaHR~p-~~~~~~~~~~e~~~~~V~ 111 (196)
.+.++.+.+++.|+...+.+.-+.|+| +.+.++++.+..-|++.|
T Consensus 113 ~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i 158 (262)
T cd07948 113 SAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRV 158 (262)
T ss_pred HHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEE
Confidence 344455666688998888888899997 888889999888888643
No 380
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=45.54 E-value=32 Score=30.26 Aligned_cols=93 Identities=16% Similarity=0.076 Sum_probs=53.4
Q ss_pred CCCCeEEEEE---cCCCCHHH--HHHHHHHHHHhC--CCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchh
Q 029271 50 ADAPIVGIIM---ESDLDLPV--MNDAARTLSDFG--VPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS 122 (196)
Q Consensus 50 ~~~~~V~Iim---GS~SD~~~--~~~~~~~l~~~g--i~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~ 122 (196)
+++..|+.+- |-....-. ..--..-.+..+ +.+....++-.-.|+.-.+..+.+-+.|++||..+||.++.=.
T Consensus 124 tkt~~vg~ig~i~G~~~p~~~~~~~gF~~Ga~~~np~i~v~~~~~gs~~D~~~~~~~a~~li~~GaDvI~~~ag~~~~gv 203 (306)
T PF02608_consen 124 TKTGKVGFIGDIGGMDIPPVNRFINGFIAGAKYVNPDIKVNVSYTGSFNDPAKAKEAAEALIDQGADVIFPVAGGSGQGV 203 (306)
T ss_dssp HSSTEEEEEEEEES--SCTTHHHHHHHHHHHHHTTTT-EEEEEE-SSSS-HHHHHHHHHHHHHTT-SEEEEE-CCCHHHH
T ss_pred hccCcccccccccCCCcHhHHHHHHHHHHHHHHhCcCceEEEEEcCCcCchHHHHHHHHHHhhcCCeEEEECCCCCchHH
Confidence 3457899998 76544321 111111222333 3355566677889999999999999999999999999655322
Q ss_pred HhhhhccCCc--EEEecCCCCC
Q 029271 123 GVAAANSQIL--VIRVPLLSED 142 (196)
Q Consensus 123 gvvA~~t~~P--VIgvP~~~~~ 142 (196)
-=.+...... +||+...-..
T Consensus 204 ~~aa~e~g~~~~~IG~d~dq~~ 225 (306)
T PF02608_consen 204 IQAAKEAGVYGYVIGVDSDQSY 225 (306)
T ss_dssp HHHHHHHTHETEEEEEES--CC
T ss_pred HHHHHHcCCceEEEEecccccc
Confidence 2233345666 9999886543
No 381
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=45.38 E-value=31 Score=33.88 Aligned_cols=48 Identities=17% Similarity=0.122 Sum_probs=34.1
Q ss_pred CchHHHHHHHHHhhCCCeEEEEecCC-CCchhHhhhh-----ccCCcEEEecCC
Q 029271 92 NCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAAA-----NSQILVIRVPLL 139 (196)
Q Consensus 92 ~p~~~~~~~~~~e~~~~~V~IavAG~-sa~L~gvvA~-----~t~~PVIgvP~~ 139 (196)
+++...+.++..++.+++.+|.+.|- |+.-+-.++- ....||||||-.
T Consensus 146 ~~e~~~~~~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkT 199 (539)
T TIGR02477 146 TEEQFAKALTTAKKLKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKT 199 (539)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeee
Confidence 45667788899999999877777665 3323334442 467999999985
No 382
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=45.32 E-value=1.8e+02 Score=24.23 Aligned_cols=63 Identities=11% Similarity=0.153 Sum_probs=40.1
Q ss_pred eEEEEEcCCCCHHH----HHHHHHHHHHhCCCeEEEEEcccC--CchHHHHHHHHHhhCCCeEEEEecC
Q 029271 54 IVGIIMESDLDLPV----MNDAARTLSDFGVPYEIKILPPHQ--NCKEALSYALSAKERGIKIIIVGDG 116 (196)
Q Consensus 54 ~V~IimGS~SD~~~----~~~~~~~l~~~gi~~ev~V~SaHR--~p~~~~~~~~~~e~~~~~V~IavAG 116 (196)
+|++|....++-++ .+.+.+.|+++|+.+.+.....+. .++.-.++++++..++++.||....
T Consensus 1 ~Igvi~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIv~~~ 69 (280)
T cd06303 1 KIAVIYPGQQISDYWVRNIASFTARLEELNIPYELTQFSSRPGIDHRLQSQQLNEALQSKPDYLIFTLD 69 (280)
T ss_pred CeeEEecCccHHHHHHHHHHHHHHHHHHcCCcEEEEEeccCcccCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 36677655322233 345567778899776665443332 5677778888888888987776554
No 383
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.31 E-value=34 Score=30.85 Aligned_cols=62 Identities=16% Similarity=0.112 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCcEEEecCC
Q 029271 68 MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 139 (196)
Q Consensus 68 ~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PVIgvP~~ 139 (196)
.+..+..|..-| ..|+..|..+..+.++.++ ++++|+++|..+-+.+=.--.- .=||-|=+.
T Consensus 171 GkPla~lL~~~~----AtVt~chs~T~~l~~~~~~-----ADIvIsAvGkp~~i~~~~ik~g-avVIDvGin 232 (278)
T PRK14172 171 GKPVAQLLLNEN----ATVTICHSKTKNLKEVCKK-----ADILVVAIGRPKFIDEEYVKEG-AIVIDVGTS 232 (278)
T ss_pred hHHHHHHHHHCC----CEEEEeCCCCCCHHHHHhh-----CCEEEEcCCCcCccCHHHcCCC-cEEEEeecc
Confidence 344444444333 3677778877778777654 6999999999887655332211 227776444
No 384
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=45.29 E-value=1.7e+02 Score=24.63 Aligned_cols=70 Identities=13% Similarity=0.114 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhC-----CCeEEEEEcccCCchHHHHHHHHHhhC-CCeEEEEecCCCC--chhHhhhhccCCcEEEe
Q 029271 66 PVMNDAARTLSDFG-----VPYEIKILPPHQNCKEALSYALSAKER-GIKIIIVGDGVEA--HLSGVAAANSQILVIRV 136 (196)
Q Consensus 66 ~~~~~~~~~l~~~g-----i~~ev~V~SaHR~p~~~~~~~~~~e~~-~~~V~IavAG~sa--~L~gvvA~~t~~PVIgv 136 (196)
+..+.+...+++.| .++++.+.---..|+...+.++++-++ +++.||...+-+. .+...+ .....|+|.+
T Consensus 18 ~~~~g~~~a~~~~~~~i~G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~~~~~~~~~~-~~~~ip~v~~ 95 (333)
T cd06332 18 DIRDGFELALKQLGGKLGGRPVEVVVEDDELKPDVAVQAARKLIEQDKVDVVVGPVFSNVALAVVPSL-TESGTFLISP 95 (333)
T ss_pred HHHHHHHHHHHHhCCCcCCeEEEEEEecCCCCHHHHHHHHHHHHHHcCCcEEEcCCccHHHHHHHHHH-hhcCCeEEec
Confidence 45566666667664 357777777677788888888777655 7877776322222 233333 3457788875
No 385
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=44.95 E-value=1.3e+02 Score=24.68 Aligned_cols=45 Identities=18% Similarity=0.053 Sum_probs=24.9
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHH
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSA 103 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~ 103 (196)
+++++|+|+++ .+...+.+.|-+-|. + |....|.++++.+..++.
T Consensus 9 ~k~~lItGas~--giG~~ia~~L~~~G~--~--vvl~~r~~~~~~~~~~~l 53 (254)
T PRK08085 9 GKNILITGSAQ--GIGFLLATGLAEYGA--E--IIINDITAERAELAVAKL 53 (254)
T ss_pred CCEEEEECCCC--hHHHHHHHHHHHcCC--E--EEEEcCCHHHHHHHHHHH
Confidence 46778888776 445556666655563 2 233445555554444433
No 386
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=44.82 E-value=1.9e+02 Score=24.26 Aligned_cols=60 Identities=10% Similarity=0.089 Sum_probs=40.2
Q ss_pred CCeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEE
Q 029271 52 APIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 113 (196)
Q Consensus 52 ~~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~Ia 113 (196)
+..|+++..+.++ ....+.+.+.++++|+.. .+.......+.-.++++.+...+++-+|.
T Consensus 35 ~~~ig~v~~~~~~~~~~~~~~gi~~~~~~~g~~~--~~~~~~~~~~~~~~~i~~l~~~~vDgiIi 97 (309)
T PRK11041 35 SRTILVIVPDICDPFFSEIIRGIEVTAAEHGYLV--LIGDCAHQNQQEKTFVNLIITKQIDGMLL 97 (309)
T ss_pred CcEEEEEeCCCcCccHHHHHHHHHHHHHHCCCEE--EEEeCCCChHHHHHHHHHHHHcCCCEEEE
Confidence 4578988765433 445567888888998654 44444456666667888888888874444
No 387
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=44.82 E-value=1.2e+02 Score=26.52 Aligned_cols=125 Identities=14% Similarity=0.039 Sum_probs=80.3
Q ss_pred ccccCCccchhhhhhhhhhhhccccCCCCCccccc----cccc--------cccccCCCCeEEEEEcCCCCHHHHHHHHH
Q 029271 6 VNHQLSSRKKTLMVTLQLLRCQIVYVPAACPSTKS----CLPR--------FLLLAADAPIVGIIMESDLDLPVMNDAAR 73 (196)
Q Consensus 6 ~~~~~~sgdk~l~~dkq~yr~l~~vt~~~~~~vk~----v~~~--------~~~~~~~~~~V~IimGS~SD~~~~~~~~~ 73 (196)
-+|=|=+=+.....=+...+.|.+..|+.-+...+ ...+ +....+...+. +++... +..
T Consensus 120 dPHiWldp~n~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~~~~~~~~~-~v~~H~--------af~ 190 (286)
T cd01019 120 DPHLWLSPENAAEVAQAVAEKLSALDPDNAATYAANLEAFNARLAELDATIKERLAPVKTKP-FFVFHD--------AYG 190 (286)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCe-EEEecc--------cHH
Confidence 35666666666666677888888888887543322 1111 11112222333 333322 233
Q ss_pred -HHHHhCCCeEEEEE-c--ccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCcEEEecCC
Q 029271 74 -TLSDFGVPYEIKIL-P--PHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 139 (196)
Q Consensus 74 -~l~~~gi~~ev~V~-S--aHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PVIgvP~~ 139 (196)
.++.||+...--+. + .=-+|.++.++++..++.++++|+.-...+.-+.-.++..+..+|+.+.+.
T Consensus 191 Yl~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~~~g~~v~~l~~l 260 (286)
T cd01019 191 YFEKRYGLTQAGVFTIDPEIDPGAKRLAKIRKEIKEKGATCVFAEPQFHPKIAETLAEGTGAKVGELDPL 260 (286)
T ss_pred HHHHHcCCceeeeecCCCCCCCCHHHHHHHHHHHHHcCCcEEEecCCCChHHHHHHHHhcCceEEEeccc
Confidence 34689997432221 1 224678899999999999999999999999999999999998888776443
No 388
>PLN02204 diacylglycerol kinase
Probab=44.66 E-value=67 Score=32.16 Aligned_cols=71 Identities=7% Similarity=0.017 Sum_probs=47.8
Q ss_pred eEEEE----EcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHH---hhCCCeEEEEecCCCCchhHhhh
Q 029271 54 IVGII----MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSA---KERGIKIIIVGDGVEAHLSGVAA 126 (196)
Q Consensus 54 ~V~Ii----mGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~---e~~~~~V~IavAG~sa~L~gvvA 126 (196)
++.|| .|..+.....++++..|+..|+.+++.++-.- ....++++++ +..+++.+||+ |+.+-+--|+-
T Consensus 161 ~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~~~v~~T~~a---ghA~d~~~~~~~~~l~~~D~VVaV-GGDGt~nEVlN 236 (601)
T PLN02204 161 NLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVTERA---GHAFDVMASISNKELKSYDGVIAV-GGDGFFNEILN 236 (601)
T ss_pred eEEEEECCCCCCcchHHHHHHHHHHHHHcCCeEEEEEecCc---chHHHHHHHHhhhhccCCCEEEEE-cCccHHHHHHH
Confidence 45554 36667778888999999999999998887543 3444454433 34567877765 55666665665
Q ss_pred hc
Q 029271 127 AN 128 (196)
Q Consensus 127 ~~ 128 (196)
|+
T Consensus 237 GL 238 (601)
T PLN02204 237 GY 238 (601)
T ss_pred HH
Confidence 55
No 389
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=44.65 E-value=30 Score=31.14 Aligned_cols=87 Identities=10% Similarity=0.047 Sum_probs=49.8
Q ss_pred eEEEEEcCCCCHH-----HHHHHHHHHHHhCCCeE-EEEEcc--cCCchHH----------------HHHHH--------
Q 029271 54 IVGIIMESDLDLP-----VMNDAARTLSDFGVPYE-IKILPP--HQNCKEA----------------LSYAL-------- 101 (196)
Q Consensus 54 ~V~IimGS~SD~~-----~~~~~~~~l~~~gi~~e-v~V~Sa--HR~p~~~----------------~~~~~-------- 101 (196)
+|+|++|+.|-.- -++.+.+.|++.|..+. +.+..- +..|+.. .++.+
T Consensus 3 ~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (347)
T PRK14572 3 KIAVFFGGSSTEHSISIRTGCFICATLHTMGHSVKPILLTPDGGWVVPTVYRPSIPDESGNSEDLFLEEFQKANGVSEPA 82 (347)
T ss_pred EEEEEECCCCcchHHHHHhHHHHHHHHhhcCCEEEEEEECCCCCEeeccccccccccccccccccccccccccccccccc
Confidence 7999999999753 34566666777776543 222221 1122111 00100
Q ss_pred HHhhCCC-eEEEEe---cCCCCchhHhhhhccCCcEEEecCCCC
Q 029271 102 SAKERGI-KIIIVG---DGVEAHLSGVAAANSQILVIRVPLLSE 141 (196)
Q Consensus 102 ~~e~~~~-~V~Iav---AG~sa~L~gvvA~~t~~PVIgvP~~~~ 141 (196)
....... -||++. -|-.+++++.+. ...+|++|+++.++
T Consensus 83 ~~~~~~~d~~f~~~hg~~gEdg~iq~~le-~~gipy~Gs~~~a~ 125 (347)
T PRK14572 83 DISQLDADIAFLGLHGGAGEDGRIQGFLD-TLGIPYTGSGVLAS 125 (347)
T ss_pred cccccCcCEEEEecCCCCCCCcHHHHHHH-HcCcCcCCCCHHHH
Confidence 0111234 477887 445778999997 45689999877653
No 390
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=44.29 E-value=1.4e+02 Score=25.78 Aligned_cols=63 Identities=14% Similarity=0.205 Sum_probs=36.6
Q ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhCCC-eEEEEEcccC--------CchHHHHHHHHHhhC-CCeEEEEecC
Q 029271 52 APIVGIIMESDLDLPVMNDAARTLSDFGVP-YEIKILPPHQ--------NCKEALSYALSAKER-GIKIIIVGDG 116 (196)
Q Consensus 52 ~~~V~IimGS~SD~~~~~~~~~~l~~~gi~-~ev~V~SaHR--------~p~~~~~~~~~~e~~-~~~V~IavAG 116 (196)
.+.++.|+|+ |.+...++.+.+.+.|+. .|+.+.+.|. .|+.+.+++++..+. ++.|++=+.+
T Consensus 99 ~pvi~si~g~--~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~ 171 (289)
T cd02810 99 QPLIASVGGS--SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSP 171 (289)
T ss_pred CeEEEEeccC--CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCC
Confidence 3455556665 555666677777777775 5676666542 345666666655443 3345554443
No 391
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=44.25 E-value=1.2e+02 Score=26.65 Aligned_cols=60 Identities=15% Similarity=0.131 Sum_probs=41.1
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHH-HhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCC
Q 029271 54 IVGIIMESDLDLPVMNDAARTLS-DFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 117 (196)
Q Consensus 54 ~V~IimGS~SD~~~~~~~~~~l~-~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~ 117 (196)
+|.++ |+ +-++++++++.|+ .||+.. ++..+-+-.+++-.++++.....+.++++++=|.
T Consensus 107 ~v~ll-G~--~~~v~~~a~~~l~~~y~l~i-~g~~~Gyf~~~e~~~i~~~I~~s~~dil~VglG~ 167 (243)
T PRK03692 107 PVFLV-GG--KPEVLAQTEAKLRTQWNVNI-VGSQDGYFTPEQRQALFERIHASGAKIVTVAMGS 167 (243)
T ss_pred eEEEE-CC--CHHHHHHHHHHHHHHhCCEE-EEEeCCCCCHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 56555 65 4568999999886 566653 2333333356777789999999899888776553
No 392
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=44.12 E-value=1.7e+02 Score=26.29 Aligned_cols=102 Identities=14% Similarity=0.178 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHH-HhCCCeEEEEEccc-CCchHHHHHHHHHhhCCCeEEEEecCCCC--chhH--------hhhhccC
Q 029271 63 LDLPVMNDAARTLS-DFGVPYEIKILPPH-QNCKEALSYALSAKERGIKIIIVGDGVEA--HLSG--------VAAANSQ 130 (196)
Q Consensus 63 SD~~~~~~~~~~l~-~~gi~~ev~V~SaH-R~p~~~~~~~~~~e~~~~~V~IavAG~sa--~L~g--------vvA~~t~ 130 (196)
.|.+.++++.+.+. ..++|..+++-.-+ .......++++.+++.|++-|.. -|+.. ...| -+.-.+.
T Consensus 116 ~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~v-h~rt~~~~~~G~a~~~~i~~ik~~~~ 194 (321)
T PRK10415 116 QYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTI-HGRTRACLFNGEAEYDSIRAVKQKVS 194 (321)
T ss_pred cCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEE-ecCccccccCCCcChHHHHHHHHhcC
Confidence 47788888887774 56777666554222 23346788998899989875543 34431 1111 2334578
Q ss_pred CcEEEecCCCCCC-ChhhhhhhhcC--CCCCeeeEEecCChh
Q 029271 131 ILVIRVPLLSEDW-SEDDVINSIRM--PSHVQVASVPRNNAK 169 (196)
Q Consensus 131 ~PVIgvP~~~~~~-~G~DLlS~lqm--PsGvpvatV~I~~~~ 169 (196)
.|||+. ++. +..|...+++. -.|+-++.=.+.||.
T Consensus 195 iPVI~n----GgI~s~~da~~~l~~~gadgVmiGR~~l~nP~ 232 (321)
T PRK10415 195 IPVIAN----GDITDPLKARAVLDYTGADALMIGRAAQGRPW 232 (321)
T ss_pred CcEEEe----CCCCCHHHHHHHHhccCCCEEEEChHhhcCCh
Confidence 899983 333 33345555543 233333333334554
No 393
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=44.06 E-value=93 Score=29.04 Aligned_cols=54 Identities=13% Similarity=0.146 Sum_probs=43.4
Q ss_pred CeEEEEEcCCCCHH-HHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC
Q 029271 53 PIVGIIMESDLDLP-VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 106 (196)
Q Consensus 53 ~~V~IimGS~SD~~-~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~ 106 (196)
.+++|+.|...|-. +.+...+.|+++||.+++.-.+..-+-+++++.++++.++
T Consensus 88 ~LaiIlvGddpaS~~Yv~~k~K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN~D 142 (345)
T PLN02897 88 GLAVVLVGQQRDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQILSALRKFNED 142 (345)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47788888776654 5566678889999999998888888888999999988654
No 394
>PRK07572 cytosine deaminase; Validated
Probab=44.02 E-value=1.6e+02 Score=27.15 Aligned_cols=98 Identities=11% Similarity=0.107 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEcccCCc-hHHHHHHHHHhhCCCe--EEEEecCCC-C--------chhHhhhhccCCc
Q 029271 65 LPVMNDAARTLSDFGVPYEIKILPPHQNC-KEALSYALSAKERGIK--IIIVGDGVE-A--------HLSGVAAANSQIL 132 (196)
Q Consensus 65 ~~~~~~~~~~l~~~gi~~ev~V~SaHR~p-~~~~~~~~~~e~~~~~--V~IavAG~s-a--------~L~gvvA~~t~~P 132 (196)
.+.++.+.+..+++|+++++++...-... ..+..+.+.+++.|+. +.+. =+.+ . ..--.+ +.....
T Consensus 190 ~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~G~~~~v~~~-H~~~l~~~~~~~~~~~~~~l-a~~g~~ 267 (426)
T PRK07572 190 AESVRLLCEIAAERGLRVDMHCDESDDPLSRHIETLAAETQRLGLQGRVAGS-HLTSMHSMDNYYVSKLIPLM-AEAGVN 267 (426)
T ss_pred HHHHHHHHHHHHHcCCCeEEEECCCCChhHHHHHHHHHHHHHhCCCCCEEEE-ccchhhcCCHHHHHHHHHHH-HHcCCe
Confidence 37888999999999999998874221111 1223355555555662 3222 1111 0 012233 234567
Q ss_pred EEEecCCCCCC----------Chhh-hhhhhcCCCCCeeeEEecCC
Q 029271 133 VIRVPLLSEDW----------SEDD-VINSIRMPSHVQVASVPRNN 167 (196)
Q Consensus 133 VIgvP~~~~~~----------~G~D-LlS~lqmPsGvpvatV~I~~ 167 (196)
|+.||.+.-.+ .|+. +.-++. .|++++ +|-|+
T Consensus 268 vv~~P~~n~~l~~~~~~~~~~~g~~~v~~l~~--~GV~v~-lGtD~ 310 (426)
T PRK07572 268 AIANPLINITLQGRHDTYPKRRGMTRVPELMA--AGINVA-FGHDC 310 (426)
T ss_pred EEECchhhhhhcCCCCCCCCCCCCcCHHHHHH--CCCcEE-EecCC
Confidence 99999754222 3555 555555 788876 34554
No 395
>PLN02564 6-phosphofructokinase
Probab=44.01 E-value=42 Score=32.66 Aligned_cols=89 Identities=21% Similarity=0.266 Sum_probs=56.1
Q ss_pred cCCCCeEEEEEcCCCCHHHHHHHHHHH----H-HhCCC-----------------eEE-------------EEEcccCCc
Q 029271 49 AADAPIVGIIMESDLDLPVMNDAARTL----S-DFGVP-----------------YEI-------------KILPPHQNC 93 (196)
Q Consensus 49 ~~~~~~V~IimGS~SD~~~~~~~~~~l----~-~~gi~-----------------~ev-------------~V~SaHR~p 93 (196)
.++.-+++|++++ -|-|=+.-+...+ . .+|+. .++ .+.+--|.+
T Consensus 84 ~p~~~riaIlTsG-Gd~PGmNavIRavv~~l~~~yg~~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GGTiLGTsR~~ 162 (484)
T PLN02564 84 ESDEVRACIVTCG-GLCPGLNTVIREIVCGLSYMYGVTRILGIDGGYRGFYSRNTIPLTPKVVNDIHKRGGTILGTSRGG 162 (484)
T ss_pred cCcceEEEEECCC-CCCccHhHHHHHHHHHHHHhCCCeEEEEEccChHHhCCCCeEeCCHHHhhcHhhCCCceeccCCCc
Confidence 3445689999966 6777777554333 2 33431 011 234455777
Q ss_pred hHHHHHHHHHhhCCCeEEEEecCCCCchhH--hhhh-----ccCCcEEEecCC
Q 029271 94 KEALSYALSAKERGIKIIIVGDGVEAHLSG--VAAA-----NSQILVIRVPLL 139 (196)
Q Consensus 94 ~~~~~~~~~~e~~~~~V~IavAG~sa~L~g--vvA~-----~t~~PVIgvP~~ 139 (196)
....++++++++.+++.+|++.|-. .+-+ .++- ...++|||+|-.
T Consensus 163 ~~~~~iv~~L~~~~Id~LivIGGDG-S~~gA~~L~e~~~~~g~~i~VIGIPKT 214 (484)
T PLN02564 163 HDTSKIVDSIQDRGINQVYIIGGDG-TQKGASVIYEEIRRRGLKVAVAGIPKT 214 (484)
T ss_pred chHHHHHHHHHHhCCCEEEEECCch-HHHHHHHHHHHHHHcCCCceEEEeccc
Confidence 8899999999999998888886643 3322 2222 234569999975
No 396
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=43.97 E-value=2e+02 Score=24.45 Aligned_cols=61 Identities=10% Similarity=0.034 Sum_probs=42.7
Q ss_pred CCeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEe
Q 029271 52 APIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 114 (196)
Q Consensus 52 ~~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~Iav 114 (196)
+..|+++....++ ....+.+.+.+++.|. ++-++..+..+++..++++......++-+|..
T Consensus 59 ~~~Ig~i~~~~~~~~~~~~~~~i~~~~~~~gy--~~~i~~~~~~~~~~~~~~~~l~~~~vdGvIi~ 122 (311)
T TIGR02405 59 DKVVAVIVSRLDSPSENLAVSGMLPVFYTAGY--DPIIMESQFSPQLTNEHLSVLQKRNVDGVILF 122 (311)
T ss_pred CCEEEEEeCCcccccHHHHHHHHHHHHHHCCC--eEEEecCCCChHHHHHHHHHHHhcCCCEEEEe
Confidence 4579999864443 3456777888888885 55666677888888888887777777645544
No 397
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=43.79 E-value=34 Score=33.67 Aligned_cols=48 Identities=19% Similarity=0.158 Sum_probs=33.6
Q ss_pred CchHHHHHHHHHhhCCCeEEEEecCCC-CchhHhhhh-----ccCCcEEEecCC
Q 029271 92 NCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAA-----NSQILVIRVPLL 139 (196)
Q Consensus 92 ~p~~~~~~~~~~e~~~~~V~IavAG~s-a~L~gvvA~-----~t~~PVIgvP~~ 139 (196)
+++...++++..++.+++.+|.+.|-. +.-+..++- ....+|||||-.
T Consensus 151 ~~e~~~~i~~~l~~~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKT 204 (550)
T cd00765 151 TEDQFKQAEETAKKLDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKT 204 (550)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeee
Confidence 456677888889999998777777753 223333433 356899999975
No 398
>PRK06139 short chain dehydrogenase; Provisional
Probab=43.78 E-value=1.3e+02 Score=26.77 Aligned_cols=53 Identities=15% Similarity=0.141 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC--CCeEEEEecCC
Q 029271 64 DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER--GIKIIIVGDGV 117 (196)
Q Consensus 64 D~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~--~~~V~IavAG~ 117 (196)
|.+..++..+.++.+|....+..+- -..++.+.+++++.++. +++++|-.||.
T Consensus 40 ~~~~l~~~~~~~~~~g~~~~~~~~D-v~d~~~v~~~~~~~~~~~g~iD~lVnnAG~ 94 (330)
T PRK06139 40 DEEALQAVAEECRALGAEVLVVPTD-VTDADQVKALATQAASFGGRIDVWVNNVGV 94 (330)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEee-CCCHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 3444555555555555432221111 13345556665555432 35788887775
No 399
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=43.57 E-value=1.3e+02 Score=29.41 Aligned_cols=70 Identities=17% Similarity=0.102 Sum_probs=57.0
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEE----EcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhh
Q 029271 54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKI----LPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA 125 (196)
Q Consensus 54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V----~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvv 125 (196)
.+.-|.-+.||++.++.+.+..++.|..++..| ...| +++.+.++++++++-|++ .|+++=+++.|-+--
T Consensus 112 di~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~-t~e~~~~~a~~l~~~Gad-~I~IkDtaGll~P~~ 185 (499)
T PRK12330 112 DVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIH-TVEGFVEQAKRLLDMGAD-SICIKDMAALLKPQP 185 (499)
T ss_pred CEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCC-CHHHHHHHHHHHHHcCCC-EEEeCCCccCCCHHH
Confidence 577788889999999999999999999775544 3355 899999999999998986 567788887776543
No 400
>PRK07475 hypothetical protein; Provisional
Probab=43.35 E-value=78 Score=27.36 Aligned_cols=76 Identities=21% Similarity=0.260 Sum_probs=0.0
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEE---EEEcccC---------------C----chHHHHHHHHHhhC--CC
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEI---KILPPHQ---------------N----CKEALSYALSAKER--GI 108 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev---~V~SaHR---------------~----p~~~~~~~~~~e~~--~~ 108 (196)
.+|+|++-...++. .+.|+..|++.++ .+.+.-. . .+++.+.++++..+ ++
T Consensus 123 ~kIGILtt~~t~l~-----~~~l~~~Gi~~~~~~~~~~g~e~~~~~~~~I~~~~~~~d~~~~~~~l~~~~~~l~~~~~~~ 197 (245)
T PRK07475 123 QKVGILTADASSLT-----PAHLLAVGVPPDTSSLPIAGLEEGGEFRRNILENRGELDNEAAEQEVVAAARALLERHPDI 197 (245)
T ss_pred CeEEEEeCCchhhh-----HHHHHhCCCCCCCccccccCcccchHHHHHHhcccccccHHHHHHHHHHHHHHHHhhCCCC
Q ss_pred -eEEEEecCCCCchhHhhhhccCCcEE
Q 029271 109 -KIIIVGDGVEAHLSGVAAANSQILVI 134 (196)
Q Consensus 109 -~V~IavAG~sa~L~gvvA~~t~~PVI 134 (196)
-||+.|..++-.+. -+...+.+|||
T Consensus 198 daIvL~CTeLp~~~~-~le~~~glPVi 223 (245)
T PRK07475 198 GAIVLECTNMPPYAA-AIQRATGLPVF 223 (245)
T ss_pred CEEEEcCcChHHHHH-HHHHhcCCCEE
No 401
>PRK10638 glutaredoxin 3; Provisional
Probab=43.30 E-value=1.1e+02 Score=21.40 Aligned_cols=65 Identities=11% Similarity=0.077 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCcEEEecCCCC
Q 029271 62 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSE 141 (196)
Q Consensus 62 ~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PVIgvP~~~~ 141 (196)
.+.=++|.+++..|++.|++|+..=.. ..++...++.+ ..|..+.|+|=+ .+.
T Consensus 9 ~~~Cp~C~~a~~~L~~~gi~y~~~dv~--~~~~~~~~l~~-----------------------~~g~~~vP~i~~--~g~ 61 (83)
T PRK10638 9 KATCPFCHRAKALLNSKGVSFQEIPID--GDAAKREEMIK-----------------------RSGRTTVPQIFI--DAQ 61 (83)
T ss_pred CCCChhHHHHHHHHHHcCCCcEEEECC--CCHHHHHHHHH-----------------------HhCCCCcCEEEE--CCE
Confidence 345589999999999999999875333 22222223322 224567788754 244
Q ss_pred CCChhh-hhhhhc
Q 029271 142 DWSEDD-VINSIR 153 (196)
Q Consensus 142 ~~~G~D-LlS~lq 153 (196)
.++|.| +...-.
T Consensus 62 ~igG~~~~~~~~~ 74 (83)
T PRK10638 62 HIGGCDDLYALDA 74 (83)
T ss_pred EEeCHHHHHHHHH
Confidence 567877 665543
No 402
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=43.19 E-value=1e+02 Score=20.89 Aligned_cols=27 Identities=30% Similarity=0.260 Sum_probs=18.3
Q ss_pred EEEEcccCCchHHHHHHHHHhhCCCeE
Q 029271 84 IKILPPHQNCKEALSYALSAKERGIKI 110 (196)
Q Consensus 84 v~V~SaHR~p~~~~~~~~~~e~~~~~V 110 (196)
+-+.|..+.++++.+.++.++++|+++
T Consensus 51 ~i~iS~sg~t~~~~~~~~~a~~~g~~i 77 (87)
T cd04795 51 VIALSYSGRTEELLAALEIAKELGIPV 77 (87)
T ss_pred EEEEECCCCCHHHHHHHHHHHHcCCeE
Confidence 455566666777777777777777753
No 403
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=43.05 E-value=1.1e+02 Score=25.64 Aligned_cols=60 Identities=22% Similarity=0.204 Sum_probs=46.1
Q ss_pred eEEEEEcCCCC--------------HHHHHHHHHHHHHhCCCeEEEEEc-ccCCchHHHHHHHHHhhCCCeEEEE
Q 029271 54 IVGIIMESDLD--------------LPVMNDAARTLSDFGVPYEIKILP-PHQNCKEALSYALSAKERGIKIIIV 113 (196)
Q Consensus 54 ~V~IimGS~SD--------------~~~~~~~~~~l~~~gi~~ev~V~S-aHR~p~~~~~~~~~~e~~~~~V~Ia 113 (196)
.+.-+.-+.|| ++.++++.+.++++|....+.... ..-+++++.++.+.+.+-|++.|.-
T Consensus 82 ~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l 156 (237)
T PF00682_consen 82 DIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYL 156 (237)
T ss_dssp SEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEE
T ss_pred CEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEe
Confidence 45666678899 888999999999999988777644 4456788888999888878876433
No 404
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=42.92 E-value=1.1e+02 Score=26.74 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=41.0
Q ss_pred HHHHHHHH-HHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCC
Q 029271 68 MNDAARTL-SDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 119 (196)
Q Consensus 68 ~~~~~~~l-~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa 119 (196)
--.+...| +++|++.-.+++.-.|+..++.+.+..+...|++=+.++.|-..
T Consensus 46 t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~ 98 (272)
T TIGR00676 46 TVRIVRRIKKETGIPTVPHLTCIGATREEIREILREYRELGIRHILALRGDPP 98 (272)
T ss_pred HHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 33444444 48899999999999999999999999999999976666666543
No 405
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=42.66 E-value=82 Score=25.90 Aligned_cols=116 Identities=19% Similarity=0.192 Sum_probs=74.1
Q ss_pred CCeEEEEEcCCCCH---HHHHHHHHHHHHhCCC----eEEEEEcccCCchHHHHHHHHHhhCCCeEEEEec----CCCCc
Q 029271 52 APIVGIIMESDLDL---PVMNDAARTLSDFGVP----YEIKILPPHQNCKEALSYALSAKERGIKIIIVGD----GVEAH 120 (196)
Q Consensus 52 ~~~V~IimGS~SD~---~~~~~~~~~l~~~gi~----~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavA----G~sa~ 120 (196)
..+|+||.+.-.+. .-.+.+.+.|+++|++ ..++|-++.-.|-...++++. ..++-+|+.+ |-.-|
T Consensus 12 ~~riaIV~s~~n~~i~~~l~~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~~---~~~DavIalG~VIrG~T~H 88 (154)
T PRK00061 12 GLRIGIVVARFNDFITDALLEGALDALKRHGVSEENIDVVRVPGAFEIPLAAKKLAES---GKYDAVIALGAVIRGETPH 88 (154)
T ss_pred CCEEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCCHHHHHHHHHHHHHc---CCCCEEEEEeeEEcCCCch
Confidence 45999999998888 7778899999999964 235778887777777666543 4467666644 65555
Q ss_pred hhHh----------hhhccCCcEEEecCCCCCCChhh-hhhhhcCCCCCeeeEEecCChhhHHHHHHHHHcc
Q 029271 121 LSGV----------AAANSQILVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGI 181 (196)
Q Consensus 121 L~gv----------vA~~t~~PVIgvP~~~~~~~G~D-LlS~lqmPsGvpvatV~I~~~~nAA~~AaqILa~ 181 (196)
---+ ++=.+.+||+.-=....+ .+ -+.-.. .. ..+.|..||..|.+++.+
T Consensus 89 ~e~V~~~v~~gl~~v~l~~~~PV~~GVLt~~~---~eQa~~R~~-~~-------~~nkG~eaa~aal~m~~l 149 (154)
T PRK00061 89 FDYVANEVAKGLADVSLETGVPVGFGVLTTDT---IEQAIERAG-TK-------AGNKGAEAALAALEMANL 149 (154)
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEecCCCC---HHHHHHHhC-cc-------ccccHHHHHHHHHHHHHH
Confidence 3222 122478888865443321 12 222211 01 127888999999998865
No 406
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=42.59 E-value=1e+02 Score=30.30 Aligned_cols=83 Identities=19% Similarity=0.186 Sum_probs=62.9
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCcE
Q 029271 54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILV 133 (196)
Q Consensus 54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PV 133 (196)
-|.|+-+-+.=+|--.|+...++.+|+|+.+-+.=.-|......++..+....| +.--..|+. |
T Consensus 82 aILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~g--l~~E~~gg~--------------v 145 (509)
T COG0532 82 AILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYG--LVPEEWGGD--------------V 145 (509)
T ss_pred EEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcC--CCHhhcCCc--------------e
Confidence 366667777888999999999999999999988888888777777777666643 222222333 8
Q ss_pred EEecCCCCCCChhh-hhhhh
Q 029271 134 IRVPLLSEDWSEDD-VINSI 152 (196)
Q Consensus 134 IgvP~~~~~~~G~D-LlS~l 152 (196)
+-||++.-...|+| ||-++
T Consensus 146 ~~VpvSA~tg~Gi~eLL~~i 165 (509)
T COG0532 146 IFVPVSAKTGEGIDELLELI 165 (509)
T ss_pred EEEEeeccCCCCHHHHHHHH
Confidence 88999987788888 77665
No 407
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=42.50 E-value=2.2e+02 Score=26.21 Aligned_cols=107 Identities=10% Similarity=0.159 Sum_probs=64.0
Q ss_pred CeEEEEEc-----CCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHH--------HHHHHhhCCC---eEEEE-ec
Q 029271 53 PIVGIIME-----SDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALS--------YALSAKERGI---KIIIV-GD 115 (196)
Q Consensus 53 ~~V~IimG-----S~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~--------~~~~~e~~~~---~V~Ia-vA 115 (196)
++|.+.+| +.|| +..+++.+..+++|++..+++.- ++++... .++.+++.|. +++++ +-
T Consensus 188 ~~v~~~~~p~~~~~~s~-~~l~~~~~lA~~~g~~i~~H~~E---~~~e~~~~~~~~g~~~v~~l~~~Gll~~~~~~~H~~ 263 (442)
T PRK07203 188 DMVEAMFGLHASFTLSD-ATLEKCREAVKETGRGYHIHVAE---GIYDVSDSHKKYGKDIVERLADFGLLGEKTLAAHCI 263 (442)
T ss_pred CceEEEEccCCCcCcCH-HHHHHHHHHHHHcCCcEEEEecC---ChHHHHHHHHHcCCCHHHHHHhCCCCCCCcEEEEee
Confidence 35666555 3344 78899999999999999998763 3333322 2233444443 34333 23
Q ss_pred CCCCchhHhhhhccCCcEEEecCCCCCC-Chhh-hhhhhcCCCCCeeeEEecCC
Q 029271 116 GVEAHLSGVAAANSQILVIRVPLLSEDW-SEDD-VINSIRMPSHVQVASVPRNN 167 (196)
Q Consensus 116 G~sa~L~gvvA~~t~~PVIgvP~~~~~~-~G~D-LlS~lqmPsGvpvatV~I~~ 167 (196)
..+..--..++ .+..-|+.||.++-.+ +|.- +.-+++ .|+.|+ +|.|+
T Consensus 264 ~~~~~d~~~la-~~g~~v~~~P~sn~~l~~g~~p~~~~~~--~Gv~v~-lGtD~ 313 (442)
T PRK07203 264 YLSDEEIDLLK-ETDTFVVHNPESNMGNAVGYNPVLEMIK--NGILLG-LGTDG 313 (442)
T ss_pred cCCHHHHHHHH-hcCCeEEECchhhhhcccCCCCHHHHHH--CCCeEE-EcCCC
Confidence 33333334443 4556799999876433 4566 887877 788765 45564
No 408
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=42.42 E-value=1.4e+02 Score=26.58 Aligned_cols=45 Identities=18% Similarity=0.144 Sum_probs=31.1
Q ss_pred CCchH---HHHHHHHHhhCCCe-EEEEecCCCCchhHhhhhccCCcEEEec
Q 029271 91 QNCKE---ALSYALSAKERGIK-IIIVGDGVEAHLSGVAAANSQILVIRVP 137 (196)
Q Consensus 91 R~p~~---~~~~~~~~e~~~~~-V~IavAG~sa~L~gvvA~~t~~PVIgvP 137 (196)
|+.++ +.+-.+.|++-|+. +|+=+- ...+.--+....+.|+||+=
T Consensus 155 rt~~~a~~~i~ra~a~~eAGA~~i~lE~v--~~~~~~~i~~~l~iP~igiG 203 (264)
T PRK00311 155 RDEEAAEKLLEDAKALEEAGAFALVLECV--PAELAKEITEALSIPTIGIG 203 (264)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEcCC--CHHHHHHHHHhCCCCEEEec
Confidence 56554 44445667788885 444332 44799999999999999973
No 409
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=42.34 E-value=76 Score=31.89 Aligned_cols=116 Identities=16% Similarity=0.187 Sum_probs=73.3
Q ss_pred chhhhhh--hhhhhhccccCCCCCccccc-------------------------cccccccccCCCCeEEEEEcCCCCHH
Q 029271 14 KKTLMVT--LQLLRCQIVYVPAACPSTKS-------------------------CLPRFLLLAADAPIVGIIMESDLDLP 66 (196)
Q Consensus 14 dk~l~~d--kq~yr~l~~vt~~~~~~vk~-------------------------v~~~~~~~~~~~~~V~IimGS~SD~~ 66 (196)
||.||.. |+-|.-=.....+.+++.-. |.+|..|.+.+ +-+++|.--+ .+
T Consensus 231 DkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~-gPi~vilvPT--re 307 (731)
T KOG0339|consen 231 DKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGE-GPIGVILVPT--RE 307 (731)
T ss_pred hHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCC-CCeEEEEecc--HH
Confidence 6666653 46666655555556654421 22332222333 3455555543 56
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHh---hhhccCCcEE
Q 029271 67 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGV---AAANSQILVI 134 (196)
Q Consensus 67 ~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gv---vA~~t~~PVI 134 (196)
-+..+...|+.||--|-+++.+.|-.-..-+++ ++++ .|+.++||--||-=-+=-+ -=.+++|-||
T Consensus 308 la~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~-k~Lk-~g~EivVaTPgRlid~VkmKatn~~rvS~LV~ 376 (731)
T KOG0339|consen 308 LASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQS-KELK-EGAEIVVATPGRLIDMVKMKATNLSRVSYLVL 376 (731)
T ss_pred HHHHHHHHHHHhhhhccceEEEeecCCcHHHHH-Hhhh-cCCeEEEechHHHHHHHHhhcccceeeeEEEE
Confidence 788899999999999999999999998888777 4555 7889999987774322222 2234555555
No 410
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=42.33 E-value=37 Score=32.22 Aligned_cols=46 Identities=17% Similarity=0.171 Sum_probs=31.6
Q ss_pred hHHHHHHHHHhhCCCeEEEEecCCCCc-hhHhhhh-----ccCCcEEEecCC
Q 029271 94 KEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAA-----NSQILVIRVPLL 139 (196)
Q Consensus 94 ~~~~~~~~~~e~~~~~V~IavAG~sa~-L~gvvA~-----~t~~PVIgvP~~ 139 (196)
+...++++++++.+++.+|++.|-... -+--++- ...+||||+|-.
T Consensus 99 ~~~~~~~~~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkT 150 (403)
T PRK06555 99 NPLKVAAERLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKT 150 (403)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeee
Confidence 346678888889899888888776432 2223332 247999999964
No 411
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=42.30 E-value=53 Score=21.53 Aligned_cols=24 Identities=13% Similarity=0.128 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcc
Q 029271 66 PVMNDAARTLSDFGVPYEIKILPP 89 (196)
Q Consensus 66 ~~~~~~~~~l~~~gi~~ev~V~Sa 89 (196)
+.+.+++-.|++.|++|+......
T Consensus 10 ~~~~~~~~~L~~~~l~~~~~~v~~ 33 (74)
T cd03051 10 PNPRRVRIFLAEKGIDVPLVTVDL 33 (74)
T ss_pred cchHHHHHHHHHcCCCceEEEeec
Confidence 689999999999999998876654
No 412
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=42.23 E-value=1.4e+02 Score=26.25 Aligned_cols=68 Identities=19% Similarity=0.168 Sum_probs=41.9
Q ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEE--------------------------EEEcccCCchHHHHHHHHHhh
Q 029271 52 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEI--------------------------KILPPHQNCKEALSYALSAKE 105 (196)
Q Consensus 52 ~~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev--------------------------~V~SaHR~p~~~~~~~~~~e~ 105 (196)
..+|++|+|+++=+- +.++..|.++|..+-+ .+..-++..+...+++++...
T Consensus 7 ~gkvalVTG~s~GIG--~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~ 84 (270)
T KOG0725|consen 7 AGKVALVTGGSSGIG--KAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVE 84 (270)
T ss_pred CCcEEEEECCCChHH--HHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHH
Confidence 368999999988765 6666667777764221 122234455666666655544
Q ss_pred C--C-CeEEEEecCCCCch
Q 029271 106 R--G-IKIIIVGDGVEAHL 121 (196)
Q Consensus 106 ~--~-~~V~IavAG~sa~L 121 (196)
+ | ++++|--||....-
T Consensus 85 ~~~GkidiLvnnag~~~~~ 103 (270)
T KOG0725|consen 85 KFFGKIDILVNNAGALGLT 103 (270)
T ss_pred HhCCCCCEEEEcCCcCCCC
Confidence 3 3 58888777765543
No 413
>PRK05876 short chain dehydrogenase; Provisional
Probab=42.22 E-value=1.5e+02 Score=25.22 Aligned_cols=10 Identities=10% Similarity=0.654 Sum_probs=7.2
Q ss_pred CeEEEEecCC
Q 029271 108 IKIIIVGDGV 117 (196)
Q Consensus 108 ~~V~IavAG~ 117 (196)
++++|-.||.
T Consensus 84 id~li~nAg~ 93 (275)
T PRK05876 84 VDVVFSNAGI 93 (275)
T ss_pred CCEEEECCCc
Confidence 4777777775
No 414
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=42.05 E-value=2.4e+02 Score=24.67 Aligned_cols=112 Identities=16% Similarity=0.061 Sum_probs=54.3
Q ss_pred EEEEEcCCCCHH---HHHHHHHHHHHhCCCeEEEEE-cccCCchHHHHHHHHHhhC----CCeEEEEecCCCCchhHhhh
Q 029271 55 VGIIMESDLDLP---VMNDAARTLSDFGVPYEIKIL-PPHQNCKEALSYALSAKER----GIKIIIVGDGVEAHLSGVAA 126 (196)
Q Consensus 55 V~IimGS~SD~~---~~~~~~~~l~~~gi~~ev~V~-SaHR~p~~~~~~~~~~e~~----~~~V~IavAG~sa~L~gvvA 126 (196)
++++.|+..... -.+-..+.|++.|++.+.... ..+-.++...+.++++-.+ ..+.|++..... .-|++.
T Consensus 165 i~~i~g~~~~~~~~~R~~G~~~al~~~g~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ai~~~~d~~--A~gvl~ 242 (330)
T PRK15395 165 YVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAM--AMGAVE 242 (330)
T ss_pred EEEEecCCCCchHHHHHHHHHHHHHhcCCCeeeeecccCCcCHHHHHHHHHHHHhhCcCCCeeEEEECCchH--HHHHHH
Confidence 466767544332 345566778888987654322 2233444444444444221 357777653322 124444
Q ss_pred hcc-----CCcEEEecCCCCCCChhhhhhhhcCCCCCeeeEEecCChhhHHHHHHH
Q 029271 127 ANS-----QILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVK 177 (196)
Q Consensus 127 ~~t-----~~PVIgvP~~~~~~~G~DLlS~lqmPsGvpvatV~I~~~~nAA~~Aaq 177 (196)
+.. ..||||+ ++.+ ++..-.|+|...+||..+ +..-+..|++
T Consensus 243 al~~~Gl~~vpVvg~-------D~~~-~~~~~~~~g~~~ttv~~~-~~~~G~~a~~ 289 (330)
T PRK15395 243 ALKAHNKSSIPVFGV-------DALP-EALALVKSGAMAGTVLND-ANNQAKATFD 289 (330)
T ss_pred HHHhcCCCCCeEEee-------CCCH-HHHHHHHhCCceEEEecC-HHHHHHHHHH
Confidence 332 4455543 2222 233333566567888544 3444444444
No 415
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=42.02 E-value=1.9e+02 Score=25.66 Aligned_cols=87 Identities=16% Similarity=0.201 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHH-HhCCCeEEEEEc-ccCCchHHHHHHHHHhhCCCeEEEEecCCCC--c------hh--HhhhhccC
Q 029271 63 LDLPVMNDAARTLS-DFGVPYEIKILP-PHQNCKEALSYALSAKERGIKIIIVGDGVEA--H------LS--GVAAANSQ 130 (196)
Q Consensus 63 SD~~~~~~~~~~l~-~~gi~~ev~V~S-aHR~p~~~~~~~~~~e~~~~~V~IavAG~sa--~------L~--gvvA~~t~ 130 (196)
.|.+.+.++.+.++ ..++|+.+++.. .......+.++++.+++.|++.|.. .|+.. . +. .-+...+.
T Consensus 114 ~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~v-h~r~~~~~~~~~~~~~~i~~i~~~~~ 192 (319)
T TIGR00737 114 RDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTL-HGRTRAQGYSGEANWDIIARVKQAVR 192 (319)
T ss_pred CCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEE-EcccccccCCCchhHHHHHHHHHcCC
Confidence 36777888777775 678898887742 2233345778888888888865543 34321 1 11 12334567
Q ss_pred CcEEEecCCCCCCChhhhhhhhc
Q 029271 131 ILVIRVPLLSEDWSEDDVINSIR 153 (196)
Q Consensus 131 ~PVIgvP~~~~~~~G~DLlS~lq 153 (196)
.|||++ ++-...-|...+++
T Consensus 193 ipvi~n---GgI~~~~da~~~l~ 212 (319)
T TIGR00737 193 IPVIGN---GDIFSPEDAKAMLE 212 (319)
T ss_pred CcEEEe---CCCCCHHHHHHHHH
Confidence 888862 22223334555554
No 416
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=42.02 E-value=38 Score=30.86 Aligned_cols=49 Identities=18% Similarity=0.153 Sum_probs=32.3
Q ss_pred EEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCcEEEecCC
Q 029271 85 KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 139 (196)
Q Consensus 85 ~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PVIgvP~~ 139 (196)
.|+..|..+..+.++.++ ++++|+++|...-+.+=.--.-. =||-|=+.
T Consensus 193 TVtvchs~T~nl~~~~~~-----ADIvv~AvGk~~~i~~~~vk~ga-vVIDvGin 241 (299)
T PLN02516 193 TVTVVHSRTPDPESIVRE-----ADIVIAAAGQAMMIKGDWIKPGA-AVIDVGTN 241 (299)
T ss_pred EEEEeCCCCCCHHHHHhh-----CCEEEEcCCCcCccCHHHcCCCC-EEEEeecc
Confidence 677779888888777653 69999999997655432211111 27776654
No 417
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=41.99 E-value=95 Score=27.84 Aligned_cols=53 Identities=13% Similarity=-0.017 Sum_probs=42.8
Q ss_pred HHHHH-HHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCC
Q 029271 65 LPVMN-DAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 117 (196)
Q Consensus 65 ~~~~~-~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~ 117 (196)
...+. -+..++++.|++.-.+++.-.++..++.+.+..+...|++=|.++.|=
T Consensus 67 ~~r~~~~a~~i~~~~g~~~i~Hltcr~~n~~~l~~~L~~~~~~GI~niLaLrGD 120 (296)
T PRK09432 67 RDRTHSIIKGIKKRTGLEAAPHLTCIDATPDELRTIAKDYWNNGIRHIVALRGD 120 (296)
T ss_pred HHHHHHHHHHHHHHhCCCeeeecccCCCCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 33344 444444799999999999999999999999999999999777777776
No 418
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=41.85 E-value=1.5e+02 Score=27.08 Aligned_cols=50 Identities=26% Similarity=0.266 Sum_probs=33.9
Q ss_pred cCCCCHH-HHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEE
Q 029271 60 ESDLDLP-VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 113 (196)
Q Consensus 60 GS~SD~~-~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~Ia 113 (196)
++..|+. ..+.+..+.+.+++|.-++..+.--+ .+.++..++.|++.|++
T Consensus 166 ~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~s----~~~a~~l~~~Gvd~I~V 216 (352)
T PRK05437 166 EGDRDFRGWLDNIAEIVSALPVPVIVKEVGFGIS----KETAKRLADAGVKAIDV 216 (352)
T ss_pred CCcccHHHHHHHHHHHHHhhCCCEEEEeCCCCCc----HHHHHHHHHcCCCEEEE
Confidence 4566776 55677777778899999888753222 45556666778876555
No 419
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=41.73 E-value=1.2e+02 Score=23.07 Aligned_cols=119 Identities=16% Similarity=0.110 Sum_probs=62.4
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhh-hhccCC
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA-AANSQI 131 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvv-A~~t~~ 131 (196)
....++.| +.+.-.+.....+.+++.-.+++.+.-. .+++.++.+. +++++.-...++.=..++ |-.+-.
T Consensus 47 ~~~l~i~G---~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~~-----~di~v~~s~~e~~~~~~~Ea~~~g~ 117 (172)
T PF00534_consen 47 NYKLVIVG---DGEYKKELKNLIEKLNLKENIIFLGYVP-DDELDELYKS-----SDIFVSPSRNEGFGLSLLEAMACGC 117 (172)
T ss_dssp TEEEEEES---HCCHHHHHHHHHHHTTCGTTEEEEESHS-HHHHHHHHHH-----TSEEEE-BSSBSS-HHHHHHHHTT-
T ss_pred CeEEEEEc---cccccccccccccccccccccccccccc-cccccccccc-----ceecccccccccccccccccccccc
Confidence 46777777 3334444555556777765566664433 5667666653 577777766633322333 334667
Q ss_pred cEEEecCCCCCCChhh-hhhhhcCCCCCeeeEEecCChhhHHHHHHHHHcc-CCHHHHHHHHHH
Q 029271 132 LVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGI-ADEDLLERIRKY 193 (196)
Q Consensus 132 PVIgvP~~~~~~~G~D-LlS~lqmPsGvpvatV~I~~~~nAA~~AaqILa~-~d~~l~~kl~~~ 193 (196)
|||. ++.++.. ++. .+.. +.+ ..+.+..-++..|..+ .+++.+++|..+
T Consensus 118 pvI~-----~~~~~~~e~~~-----~~~~-g~~--~~~~~~~~l~~~i~~~l~~~~~~~~l~~~ 168 (172)
T PF00534_consen 118 PVIA-----SDIGGNNEIIN-----DGVN-GFL--FDPNDIEELADAIEKLLNDPELRQKLGKN 168 (172)
T ss_dssp EEEE-----ESSTHHHHHSG-----TTTS-EEE--ESTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceee-----ccccCCceeec-----cccc-eEE--eCCCCHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 7774 2344443 332 2221 222 2333666666666655 555777777654
No 420
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=41.70 E-value=1.8e+02 Score=23.31 Aligned_cols=59 Identities=15% Similarity=0.158 Sum_probs=38.0
Q ss_pred hCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchh-HhhhhccCCcEEEe
Q 029271 78 FGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS-GVAAANSQILVIRV 136 (196)
Q Consensus 78 ~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~-gvvA~~t~~PVIgv 136 (196)
.|.++++.+.-..-.++...+.++++..++++++|...+.....+ .-.+.....|||..
T Consensus 37 ~g~~v~~~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~~~~~~~~~~~~~~~~ip~i~~ 96 (298)
T cd06268 37 LGRKIELVVEDTQGDPEAAAAAARELVDDGVDAVIGPLSSGVALAAAPVAEEAGVPLISP 96 (298)
T ss_pred CCeEEEEEEecCCCCHHHHHHHHHHHHhCCceEEEcCCcchhHHhhHHHHHhCCCcEEcc
Confidence 456677777767667888888888887777877765443322211 12334567899865
No 421
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=41.70 E-value=51 Score=21.70 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcc
Q 029271 66 PVMNDAARTLSDFGVPYEIKILPP 89 (196)
Q Consensus 66 ~~~~~~~~~l~~~gi~~ev~V~Sa 89 (196)
+.+.+++-.|++.|++|+......
T Consensus 10 ~~~~~v~~~l~~~~~~~~~~~i~~ 33 (73)
T cd03056 10 GNCYKVRLLLALLGIPYEWVEVDI 33 (73)
T ss_pred ccHHHHHHHHHHcCCCcEEEEecC
Confidence 678899999999999999876654
No 422
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.62 E-value=44 Score=30.24 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=33.4
Q ss_pred EEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCcEEEecCC
Q 029271 85 KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 139 (196)
Q Consensus 85 ~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PVIgvP~~ 139 (196)
.|+..|..+..+.++.++ ++++|+++|..+-+.+=.--.-. =||-|=+.
T Consensus 183 tVtichs~T~~l~~~~~~-----ADIvI~AvG~~~~i~~~~vk~Ga-vVIDvGin 231 (284)
T PRK14170 183 TVTIAHSRTKDLPQVAKE-----ADILVVATGLAKFVKKDYIKPGA-IVIDVGMD 231 (284)
T ss_pred EEEEeCCCCCCHHHHHhh-----CCEEEEecCCcCccCHHHcCCCC-EEEEccCc
Confidence 566668888888777664 69999999999877642222222 27777665
No 423
>PRK15456 universal stress protein UspG; Provisional
Probab=41.52 E-value=1.2e+02 Score=22.79 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=21.2
Q ss_pred HHHHHHHhhCCCeEEEEecCCCCchhHhh--------hhccCCcEEEe
Q 029271 97 LSYALSAKERGIKIIIVGDGVEAHLSGVA--------AANSQILVIRV 136 (196)
Q Consensus 97 ~~~~~~~e~~~~~V~IavAG~sa~L~gvv--------A~~t~~PVIgv 136 (196)
..+.+.+++.+++.||.++-+.+ +...+ .-+++.||.-|
T Consensus 95 ~~I~~~a~~~~~DLIVmG~~g~~-~~~~llGS~a~~v~~~a~~pVLvV 141 (142)
T PRK15456 95 DEVNELAEELGADVVVIGSRNPS-ISTHLLGSNASSVIRHANLPVLVV 141 (142)
T ss_pred HHHHHHHhhcCCCEEEEcCCCCC-ccceecCccHHHHHHcCCCCEEEe
Confidence 34555566678887766554333 43332 22456666654
No 424
>PRK07063 short chain dehydrogenase; Provisional
Probab=41.47 E-value=2e+02 Score=23.65 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=14.0
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCC
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGV 80 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi 80 (196)
+++++|+|+++ .+...+.+.|-+-|.
T Consensus 7 ~k~vlVtGas~--gIG~~~a~~l~~~G~ 32 (260)
T PRK07063 7 GKVALVTGAAQ--GIGAAIARAFAREGA 32 (260)
T ss_pred CCEEEEECCCc--hHHHHHHHHHHHCCC
Confidence 35666666665 334455555555553
No 425
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=41.20 E-value=1.6e+02 Score=22.45 Aligned_cols=77 Identities=14% Similarity=0.043 Sum_probs=43.0
Q ss_pred HHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCC------cEEEecCCCCCCChhh
Q 029271 74 TLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI------LVIRVPLLSEDWSEDD 147 (196)
Q Consensus 74 ~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~------PVIgvP~~~~~~~G~D 147 (196)
.+.++..+++++.+. ++..++..++.+++. ..+ +|.++|+.+.+.-++.++-.. |.|++=|.+ . |-|
T Consensus 19 ~~~~~l~~~~v~~t~-~~~~~~~~~~~~~~~--~~d-~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~G-T--gNd 91 (124)
T smart00046 19 KFRLLLNPAQVFDLT-KKGPAAALVIFRDLP--KFD-RVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLG-T--GND 91 (124)
T ss_pred HHHHHcCCceEEEEe-cCChHHHHHHHhhcC--cCC-EEEEEccccHHHHHHHHHHhcccccCCCcEEEeCCC-C--hhH
Confidence 344444555665554 444555555555443 233 555789999999998887422 445544433 2 445
Q ss_pred hhhhhcCCCC
Q 029271 148 VINSIRMPSH 157 (196)
Q Consensus 148 LlS~lqmPsG 157 (196)
+--++.+|..
T Consensus 92 far~lgi~~~ 101 (124)
T smart00046 92 LARSLGWGGG 101 (124)
T ss_pred HHHHcCCCCC
Confidence 5556666554
No 426
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=41.17 E-value=70 Score=26.80 Aligned_cols=80 Identities=11% Similarity=-0.011 Sum_probs=55.5
Q ss_pred EEEcCCCC-HHHHHHHHHHHHHhCC---------CeEEEEEcccCCchHHHHHHHHHhh------CCCeEEEEecCCCCc
Q 029271 57 IIMESDLD-LPVMNDAARTLSDFGV---------PYEIKILPPHQNCKEALSYALSAKE------RGIKIIIVGDGVEAH 120 (196)
Q Consensus 57 IimGS~SD-~~~~~~~~~~l~~~gi---------~~ev~V~SaHR~p~~~~~~~~~~e~------~~~~V~IavAG~sa~ 120 (196)
..+|-..| +.++.++...|..-+- ++-+-....++.|+.+..+.+.+.. ..+++|++++-..--
T Consensus 19 ~~~~~ia~el~vs~~t~~~l~~~~~~~~~~~~~~~~yid~~~~~~~~~~l~~i~~~la~~i~~~~~~~D~Ivgi~~gG~~ 98 (200)
T PRK02277 19 LSTGEIADELNVSRETATWLLTRAKKLEKAPAPKDIHIDWSSIGSSSSRLRYIASAMADMLEKEDEEVDVVVGIAKSGVP 98 (200)
T ss_pred CChhhhhhhhcchHHHHHHHHhcccCCCCCCCCCCEEEEChhhccCHHHHHHHHHHHHHHHHhcCCCCCEEEeeccCCHH
Confidence 34555565 6688888888853222 3455666788888877765554432 345899999998888
Q ss_pred hhHhhhhccCCcEEEe
Q 029271 121 LSGVAAANSQILVIRV 136 (196)
Q Consensus 121 L~gvvA~~t~~PVIgv 136 (196)
++..+|-....|..-.
T Consensus 99 ~A~~lA~~L~~~~~~~ 114 (200)
T PRK02277 99 LATLVADELGKDLAIY 114 (200)
T ss_pred HHHHHHHHhCCCcEEE
Confidence 9999999888886443
No 427
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=41.14 E-value=63 Score=28.60 Aligned_cols=29 Identities=21% Similarity=0.123 Sum_probs=19.8
Q ss_pred CeEEEEecCCCCchhHhhhhccCCcEEEecCCC
Q 029271 108 IKIIIVGDGVEAHLSGVAAANSQILVIRVPLLS 140 (196)
Q Consensus 108 ~~V~IavAG~sa~L~gvvA~~t~~PVIgvP~~~ 140 (196)
+++||+.-.+--||+ +-...|+|++--++
T Consensus 262 a~l~I~nDTGp~HlA----aA~g~P~valfGpt 290 (348)
T PRK10916 262 CKAIVTNDSGLMHVA----AALNRPLVALYGPS 290 (348)
T ss_pred CCEEEecCChHHHHH----HHhCCCEEEEECCC
Confidence 678888776666654 44578888875443
No 428
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=40.76 E-value=1.5e+02 Score=24.77 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=14.8
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCC
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGV 80 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi 80 (196)
.++++|+|+++ .+...+...|.+-|.
T Consensus 10 ~k~vlVtGas~--giG~~ia~~l~~~G~ 35 (278)
T PRK08277 10 GKVAVITGGGG--VLGGAMAKELARAGA 35 (278)
T ss_pred CCEEEEeCCCc--hHHHHHHHHHHHCCC
Confidence 35667777665 344555555555554
No 429
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.69 E-value=2e+02 Score=23.41 Aligned_cols=79 Identities=11% Similarity=0.135 Sum_probs=47.5
Q ss_pred EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--hcc
Q 029271 55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANS 129 (196)
Q Consensus 55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA--~~t 129 (196)
|++++-..++ ....+.+.+.++++|..+ -+......++...++++...+.+++-+|...-.... . .+. -..
T Consensus 2 igvi~p~~~~~~~~~~~~gi~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~~~-~-~~~~~~~~ 77 (265)
T cd06285 2 IGVLVPRLTDTVMATMYEGIEEAAAERGYST--FVANTGDNPDAQRRAIEMLLDRRVDGLILGDARSDD-H-FLDELTRR 77 (265)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHHCCCEE--EEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCh-H-HHHHHHHc
Confidence 5666654332 344457777788888764 445566677888888888888888755543322222 1 222 224
Q ss_pred CCcEEEec
Q 029271 130 QILVIRVP 137 (196)
Q Consensus 130 ~~PVIgvP 137 (196)
..||+-+=
T Consensus 78 ~iPvv~~~ 85 (265)
T cd06285 78 GVPFVLVL 85 (265)
T ss_pred CCCEEEEc
Confidence 57887653
No 430
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=40.67 E-value=61 Score=24.46 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEcccC-CchHHHHHHHH
Q 029271 65 LPVMNDAARTLSDFGVPYEIKILPPHQ-NCKEALSYALS 102 (196)
Q Consensus 65 ~~~~~~~~~~l~~~gi~~ev~V~SaHR-~p~~~~~~~~~ 102 (196)
=+.|.++.+.|++.|++|+.+=..... +.+++.++++.
T Consensus 9 C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~~ 47 (111)
T cd03036 9 CSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLEK 47 (111)
T ss_pred CHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHHH
Confidence 478999999999999999876554433 44555566543
No 431
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=40.64 E-value=1.9e+02 Score=23.26 Aligned_cols=128 Identities=13% Similarity=-0.002 Sum_probs=0.0
Q ss_pred cccccCCCCeEEEEEcCCCC---HHHHHHHHHHHHHhCCCe-EEEEEcccCCchHHHHHHHHHhhCC--CeEEEEecCCC
Q 029271 45 FLLLAADAPIVGIIMESDLD---LPVMNDAARTLSDFGVPY-EIKILPPHQNCKEALSYALSAKERG--IKIIIVGDGVE 118 (196)
Q Consensus 45 ~~~~~~~~~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~-ev~V~SaHR~p~~~~~~~~~~e~~~--~~V~IavAG~s 118 (196)
+++......+|++++|...+ ....+...+.+++.|++. ...+..-..+.+...+.++++-..+ .++|++.....
T Consensus 113 ~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~ 192 (268)
T cd06271 113 RRLIALGHRRIALLNPPEDLTFAQHRRAGYRRALAEAGLPLDPALIVSGDMTEEGGYAAAAELLALPDRPTAIVCSSELM 192 (268)
T ss_pred HHHHHcCCCcEEEecCccccchHHHHHHHHHHHHHHhCCCCCCceEEeCCCChHHHHHHHHHHHhCCCCCCEEEEcCcHH
Q ss_pred CchhHhhhhccCCcEEEecCCCCCCChhhhhhhhcCCCCCeeeEEecC-ChhhHHHHHHHHH
Q 029271 119 AHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRN-NAKNAALYAVKVL 179 (196)
Q Consensus 119 a~L~gvvA~~t~~PVIgvP~~~~~~~G~DLlS~lqmPsGvpvatV~I~-~~~nAA~~AaqIL 179 (196)
+.-..-......+.| +..-..-|.|-....+ ..+-+.+|+ . ++.--|..|+++|
T Consensus 193 a~g~~~al~~~g~~v----p~~i~iig~d~~~~~~-~~~~~ltti--~~~~~~~g~~a~~~l 247 (268)
T cd06271 193 ALGVLAALAEAGLRP----GRDVSVVGFDDSPPLL-FFSPPLTTV--RSDLRAAGRRLAELL 247 (268)
T ss_pred HHHHHHHHHHhCCCC----CcceeEEEecCchHHh-hcCCCceEE--ccCHHHHHHHHHHHH
No 432
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=40.47 E-value=1.2e+02 Score=26.32 Aligned_cols=54 Identities=26% Similarity=0.164 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCC
Q 029271 65 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 118 (196)
Q Consensus 65 ~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~s 118 (196)
.....-+..+++..|++.-.+++.-.++..++.+.+..+...|++=+.++.|=-
T Consensus 44 ~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~ 97 (274)
T cd00537 44 DMTLLAAARILQEGGIEPIPHLTCRDRNRIELQSILLGAHALGIRNILALRGDP 97 (274)
T ss_pred hhHHHHHHHHHHhcCCCeeeecccCCCCHHHHHHHHHHHHHCCCCeEEEeCCCC
Confidence 345555666667889999999999999999999999999999997666666643
No 433
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=40.37 E-value=1.5e+02 Score=28.08 Aligned_cols=21 Identities=19% Similarity=0.023 Sum_probs=12.2
Q ss_pred CeEEEEecCCCCchhHhhhhc
Q 029271 108 IKIIIVGDGVEAHLSGVAAAN 128 (196)
Q Consensus 108 ~~V~IavAG~sa~L~gvvA~~ 128 (196)
+++++.+.++.+||.+++++.
T Consensus 92 vD~Vv~Ai~G~aGl~ptl~Ai 112 (385)
T PRK05447 92 ADVVVAAIVGAAGLLPTLAAI 112 (385)
T ss_pred CCEEEEeCcCcccHHHHHHHH
Confidence 455555555555666666654
No 434
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.27 E-value=45 Score=30.12 Aligned_cols=74 Identities=20% Similarity=0.212 Sum_probs=45.5
Q ss_pred EEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCcEEEecCCC---CCCCh-hh---hhhh----h
Q 029271 84 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLS---EDWSE-DD---VINS----I 152 (196)
Q Consensus 84 v~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PVIgvP~~~---~~~~G-~D---LlS~----l 152 (196)
..|+..|+.+..+.++.++ ++++|+++|..+-+.+=.--.-.. ||-|=+.. +.+-| .| .... -
T Consensus 182 atVt~chs~T~nl~~~~~~-----ADIvIsAvGkp~~i~~~~vk~Gav-VIDvGin~~~~gkl~GDVd~~~v~~~a~~iT 255 (282)
T PRK14166 182 ATVSVCHIKTKDLSLYTRQ-----ADLIIVAAGCVNLLRSDMVKEGVI-VVDVGINRLESGKIVGDVDFEEVSKKSSYIT 255 (282)
T ss_pred CEEEEeCCCCCCHHHHHhh-----CCEEEEcCCCcCccCHHHcCCCCE-EEEecccccCCCCeeCCCCHHHHHhhccEec
Confidence 4677789888888777653 699999999988776533222222 77776543 22322 23 3222 2
Q ss_pred cCCCCCeeeEE
Q 029271 153 RMPSHVQVASV 163 (196)
Q Consensus 153 qmPsGvpvatV 163 (196)
-.|.|++.-|+
T Consensus 256 PVPGGVGp~T~ 266 (282)
T PRK14166 256 PVPGGVGPMTI 266 (282)
T ss_pred CCCCCchHHHH
Confidence 34788776655
No 435
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=40.13 E-value=2.3e+02 Score=24.24 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=11.2
Q ss_pred CchHHHHHHHHHhhCCCeEEEE
Q 029271 92 NCKEALSYALSAKERGIKIIIV 113 (196)
Q Consensus 92 ~p~~~~~~~~~~e~~~~~V~Ia 113 (196)
++++..++++.+++-|++.++.
T Consensus 77 ~~~~~i~~a~~a~~~Gad~v~v 98 (281)
T cd00408 77 STREAIELARHAEEAGADGVLV 98 (281)
T ss_pred cHHHHHHHHHHHHHcCCCEEEE
Confidence 4445555555555555544333
No 436
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.87 E-value=47 Score=30.05 Aligned_cols=63 Identities=13% Similarity=0.114 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCcEEEecCC
Q 029271 67 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 139 (196)
Q Consensus 67 ~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PVIgvP~~ 139 (196)
+.+..+..|..-| -.|+..|+.+..+.++.++ ++++|+++|..+-+.+=.--.-. =||-|=+.
T Consensus 167 VGkPla~lL~~~~----aTVtichs~T~~l~~~~~~-----ADIvIsAvGkp~~i~~~~vk~Ga-vVIDVGin 229 (287)
T PRK14173 167 VGKPLAALLLRED----ATVTLAHSKTQDLPAVTRR-----ADVLVVAVGRPHLITPEMVRPGA-VVVDVGIN 229 (287)
T ss_pred cHHHHHHHHHHCC----CEEEEeCCCCCCHHHHHhh-----CCEEEEecCCcCccCHHHcCCCC-EEEEccCc
Confidence 3444444444333 2566668888777776653 79999999999877653322222 27766554
No 437
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=39.82 E-value=56 Score=24.71 Aligned_cols=40 Identities=15% Similarity=0.077 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEc-ccCCchHHHHHHHH
Q 029271 63 LDLPVMNDAARTLSDFGVPYEIKILP-PHQNCKEALSYALS 102 (196)
Q Consensus 63 SD~~~~~~~~~~l~~~gi~~ev~V~S-aHR~p~~~~~~~~~ 102 (196)
..=+.|+++.+.|++.|++|+.+=.. -.-+.+++.++++.
T Consensus 8 ~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~~ 48 (115)
T cd03032 8 PSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILSL 48 (115)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHHH
Confidence 45578999999999999998865443 33345556566553
No 438
>PRK07478 short chain dehydrogenase; Provisional
Probab=39.64 E-value=1.8e+02 Score=23.87 Aligned_cols=27 Identities=26% Similarity=0.238 Sum_probs=15.4
Q ss_pred CchHHHHHHHHHhhC--CCeEEEEecCCC
Q 029271 92 NCKEALSYALSAKER--GIKIIIVGDGVE 118 (196)
Q Consensus 92 ~p~~~~~~~~~~e~~--~~~V~IavAG~s 118 (196)
.++.+.+++++..+. .++++|-.||..
T Consensus 66 ~~~~~~~~~~~~~~~~~~id~li~~ag~~ 94 (254)
T PRK07478 66 DEAYAKALVALAVERFGGLDIAFNNAGTL 94 (254)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 344555555544332 467888888764
No 439
>PRK08589 short chain dehydrogenase; Validated
Probab=39.64 E-value=1.9e+02 Score=24.27 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=15.0
Q ss_pred chHHHHHHHHHhhC--CCeEEEEecCCC
Q 029271 93 CKEALSYALSAKER--GIKIIIVGDGVE 118 (196)
Q Consensus 93 p~~~~~~~~~~e~~--~~~V~IavAG~s 118 (196)
++.+.+++++..+. .++++|-.||..
T Consensus 66 ~~~~~~~~~~~~~~~g~id~li~~Ag~~ 93 (272)
T PRK08589 66 EQQVKDFASEIKEQFGRVDVLFNNAGVD 93 (272)
T ss_pred HHHHHHHHHHHHHHcCCcCEEEECCCCC
Confidence 34445555544332 357888888764
No 440
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=39.47 E-value=1.1e+02 Score=20.22 Aligned_cols=70 Identities=13% Similarity=0.091 Sum_probs=44.3
Q ss_pred eEEEEEcCCCCHHH--HHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCC
Q 029271 54 IVGIIMESDLDLPV--MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI 131 (196)
Q Consensus 54 ~V~IimGS~SD~~~--~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~ 131 (196)
+|.+++++---... .+++++.+++.++...+...+.... .....+++||+-.-.. ......
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~~~~~~~~~~~~~~~~~~~----------~~~~~~dliitt~~~~-------~~~~~~ 63 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKAAKELGIEVKVEAQGLSEV----------IDLADADLIISTVPLA-------ARFLGK 63 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHHHHHCCCeEEEEEcccchh----------hhcCCccEEEECCccc-------cccCCC
Confidence 36777766544444 4788999999999766654433221 1224468888866433 345677
Q ss_pred cEEEecCCC
Q 029271 132 LVIRVPLLS 140 (196)
Q Consensus 132 PVIgvP~~~ 140 (196)
||+-+.+.-
T Consensus 64 p~~~i~~~~ 72 (84)
T cd00133 64 PVIVVSPLL 72 (84)
T ss_pred cEEEEcccc
Confidence 888887764
No 441
>COG0011 Uncharacterized conserved protein [Function unknown]
Probab=39.41 E-value=86 Score=24.31 Aligned_cols=45 Identities=16% Similarity=0.221 Sum_probs=35.0
Q ss_pred EcCCCCHHHHHHHHHHHHHhCCCeEEE----EEcccCCchHHHHHHHHHhh
Q 029271 59 MESDLDLPVMNDAARTLSDFGVPYEIK----ILPPHQNCKEALSYALSAKE 105 (196)
Q Consensus 59 mGS~SD~~~~~~~~~~l~~~gi~~ev~----V~SaHR~p~~~~~~~~~~e~ 105 (196)
+++.|=.++..++.+.|+++|++|+++ +.=. ..+++.+.++++..
T Consensus 14 t~~~svs~yVa~~i~~lk~~glky~~~pm~T~iEg--~~del~~~ik~~~E 62 (100)
T COG0011 14 TGGPSVSKYVAEAIEILKESGLKYQLGPMGTVIEG--ELDELMEAVKEAHE 62 (100)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCceeecCcceEEEe--cHHHHHHHHHHHHH
Confidence 356666899999999999999999863 2223 77888888887754
No 442
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.22 E-value=47 Score=29.97 Aligned_cols=64 Identities=17% Similarity=0.208 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCcEEEecCCC
Q 029271 67 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLS 140 (196)
Q Consensus 67 ~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PVIgvP~~~ 140 (196)
+.+..+..|..-| ..|+..|..+..+.++.++ ++++|++.|..+-+.+=.--.-. =||-|=+..
T Consensus 168 VGkPla~lL~~~~----atVtichs~T~~l~~~~~~-----ADIvI~AvG~p~~i~~~~vk~Ga-vVIDvGin~ 231 (282)
T PRK14169 168 VGRPLAGLMVNHD----ATVTIAHSKTRNLKQLTKE-----ADILVVAVGVPHFIGADAVKPGA-VVIDVGISR 231 (282)
T ss_pred chHHHHHHHHHCC----CEEEEECCCCCCHHHHHhh-----CCEEEEccCCcCccCHHHcCCCc-EEEEeeccc
Confidence 3444555554433 3566678777777776654 69999999998876543222212 277776643
No 443
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=39.20 E-value=82 Score=26.81 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCeEEEEEcccCC-------chHHHHHHHHHhhCCCeEEEE
Q 029271 69 NDAARTLSDFGVPYEIKILPPHQN-------CKEALSYALSAKERGIKIIIV 113 (196)
Q Consensus 69 ~~~~~~l~~~gi~~ev~V~SaHR~-------p~~~~~~~~~~e~~~~~V~Ia 113 (196)
+.+.+..+++.=.+|+-|.+.|-. .++..++...+-..|+++||+
T Consensus 171 ~~i~~~i~~~r~~~D~vIv~~HwG~e~~~~p~~~q~~~a~~lidaGaDiIiG 222 (250)
T PF09587_consen 171 ERIKEDIREARKKADVVIVSLHWGIEYENYPTPEQRELARALIDAGADIIIG 222 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEEeccCCCCCCCCCHHHHHHHHHHHHcCCCEEEe
Confidence 666666666665689999999987 667888888888889999986
No 444
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.17 E-value=52 Score=29.71 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=31.4
Q ss_pred EEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCcEEEecCC
Q 029271 85 KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 139 (196)
Q Consensus 85 ~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PVIgvP~~ 139 (196)
.|+..|..+..+.++.++ ++++|++.|..+-+.+=.=-.- -=||-|=..
T Consensus 184 tVt~chs~t~~l~~~~~~-----ADIvI~AvG~p~~i~~~~ik~g-avVIDvGi~ 232 (284)
T PRK14190 184 TVTYCHSKTKNLAELTKQ-----ADILIVAVGKPKLITADMVKEG-AVVIDVGVN 232 (284)
T ss_pred EEEEEeCCchhHHHHHHh-----CCEEEEecCCCCcCCHHHcCCC-CEEEEeecc
Confidence 556678888877776653 6999999999886544221111 127766554
No 445
>PRK11253 ldcA L,D-carboxypeptidase A; Provisional
Probab=39.11 E-value=1.4e+02 Score=26.86 Aligned_cols=67 Identities=15% Similarity=0.105 Sum_probs=43.4
Q ss_pred CeEEEEEcCC--CCHHHHHHHHHHHHHhCCCeEEEEEc-------ccCCchHHHHHHHHH--hhCCCeEEEEecCCCCc
Q 029271 53 PIVGIIMESD--LDLPVMNDAARTLSDFGVPYEIKILP-------PHQNCKEALSYALSA--KERGIKIIIVGDGVEAH 120 (196)
Q Consensus 53 ~~V~IimGS~--SD~~~~~~~~~~l~~~gi~~ev~V~S-------aHR~p~~~~~~~~~~--e~~~~~V~IavAG~sa~ 120 (196)
.+|+||.=|. .+.+..+.+.+.|+++|..+.+.=.. +.-.-+|..++.+.+ .+. ++.|+++-|+.+.
T Consensus 2 ~~I~viAPSs~~~~~~~~~~~i~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~a~~dp-i~aI~~~rGGyg~ 79 (305)
T PRK11253 2 SLFHLIAPSGYPIDQAAALRGVQRLTDAGHQVENVEVIARRYQRFAGTDGERLADLNSLADLTTP-NTIVLAVRGGYGA 79 (305)
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHhCCCEEeeccccccccCccCCCHHHHHHHHHHHHhcCCC-ccEEEEecccCCH
Confidence 3688888664 27788999999999999864432111 111223455555544 455 8999999998553
No 446
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=38.87 E-value=1.4e+02 Score=27.48 Aligned_cols=59 Identities=10% Similarity=0.090 Sum_probs=44.0
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCc---------hHHHHHHHHHhhCCCeEEEEe
Q 029271 54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNC---------KEALSYALSAKERGIKIIIVG 114 (196)
Q Consensus 54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p---------~~~~~~~~~~e~~~~~V~Iav 114 (196)
...+|-|=..+.+++++.++.|+.++ +.+.+.-.|..+ +++.++.+.+++.|+.|.|--
T Consensus 262 eyvLI~GvNDs~e~a~~La~llk~l~--~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~ 329 (355)
T TIGR00048 262 EYVLLDGVNDQVEHAEELAELLKGTK--CKVNLIPWNPFPEADYERPSNEQIDRFAKTLMSYGFTVTIRK 329 (355)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC--CceEEEecccCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeC
Confidence 35566676667899999999999776 466666666533 677788888888898888743
No 447
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=38.83 E-value=1.6e+02 Score=27.48 Aligned_cols=27 Identities=11% Similarity=0.226 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhCCCe
Q 029271 54 IVGIIMESDLDLPVMNDAARTLSDFGVPY 82 (196)
Q Consensus 54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~ 82 (196)
.| ++-|+.++-. ..+++..|+.+|+++
T Consensus 168 ~V-niiG~~~~~d-~~el~~lL~~~Gi~v 194 (427)
T PRK02842 168 SL-VLVGSLADVV-EDQLTLEFKKLGIGV 194 (427)
T ss_pred cE-EEEEeCCcch-HHHHHHHHHHcCCee
Confidence 45 6778777644 478888888888876
No 448
>PF14528 LAGLIDADG_3: LAGLIDADG-like domain; PDB: 2CW7_A 2CW8_A 2VS8_F 2VS7_G 1B24_A 1DQ3_A 2DCH_X.
Probab=38.77 E-value=34 Score=23.62 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCeEEEE
Q 029271 62 DLDLPVMNDAARTLSDFGVPYEIKI 86 (196)
Q Consensus 62 ~SD~~~~~~~~~~l~~~gi~~ev~V 86 (196)
+.|.+.++.+...|.+|||...+..
T Consensus 28 ~~s~~ll~~v~~lL~~lGi~~~i~~ 52 (77)
T PF14528_consen 28 SKSKELLEDVQKLLLRLGIKASIYE 52 (77)
T ss_dssp ES-HHHHHHHHHHHHHTT--EEEEE
T ss_pred ECCHHHHHHHHHHHHHCCCeeEEEE
Confidence 4789999999999999999876653
No 449
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=38.77 E-value=2.1e+02 Score=23.15 Aligned_cols=78 Identities=15% Similarity=0.118 Sum_probs=44.9
Q ss_pred CCCeEEEEEcCCCC----HHHHHHHHHHHHHhCCCeEE-EEEcccCCchHHHHHHHHHhhCC-CeEEEEecCCCCchhHh
Q 029271 51 DAPIVGIIMESDLD----LPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERG-IKIIIVGDGVEAHLSGV 124 (196)
Q Consensus 51 ~~~~V~IimGS~SD----~~~~~~~~~~l~~~gi~~ev-~V~SaHR~p~~~~~~~~~~e~~~-~~V~IavAG~sa~L~gv 124 (196)
...+|+++.|+..| ....+...+.+++.|++++. .+......++...+.++.+-.++ .+.|++..... .-++
T Consensus 115 g~~~i~~l~~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ai~~~~d~~--a~~~ 192 (268)
T cd06298 115 GHKKIAFISGPLEDSINGDERLAGYKEALSEANIEFDESLIFEGDYTYESGYELAEELLEDGKPTAAFVTDDEL--AIGI 192 (268)
T ss_pred CCceEEEEeCCcccccchhHHHHHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHhcCCCCCEEEEcCcHH--HHHH
Confidence 34589999877652 23445567788888876532 23334555666655555554333 67777743322 3356
Q ss_pred hhhccC
Q 029271 125 AAANSQ 130 (196)
Q Consensus 125 vA~~t~ 130 (196)
+.+.-.
T Consensus 193 ~~~l~~ 198 (268)
T cd06298 193 LNAAQD 198 (268)
T ss_pred HHHHHH
Confidence 655433
No 450
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=38.68 E-value=77 Score=23.73 Aligned_cols=39 Identities=13% Similarity=0.058 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHH
Q 029271 61 SDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSY 99 (196)
Q Consensus 61 S~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~ 99 (196)
+..+-+++++++-+|.+-|++|++.-......|+.+.++
T Consensus 18 ~~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~ 56 (91)
T cd03061 18 SIGNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDL 56 (91)
T ss_pred CCCCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHh
Confidence 345668999999999999999999877777778776554
No 451
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=38.68 E-value=1.9e+02 Score=25.02 Aligned_cols=25 Identities=4% Similarity=0.103 Sum_probs=15.3
Q ss_pred chHHHHHHHHHhhC--CCeEEEEecCC
Q 029271 93 CKEALSYALSAKER--GIKIIIVGDGV 117 (196)
Q Consensus 93 p~~~~~~~~~~e~~--~~~V~IavAG~ 117 (196)
++.+.+++++..+. .++++|-.||.
T Consensus 67 ~~~v~~~~~~~~~~~~~iD~li~nAg~ 93 (322)
T PRK07453 67 LDSVRRFVDDFRALGKPLDALVCNAAV 93 (322)
T ss_pred HHHHHHHHHHHHHhCCCccEEEECCcc
Confidence 34455555554433 36899988884
No 452
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=38.56 E-value=42 Score=22.76 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEE
Q 029271 66 PVMNDAARTLSDFGVPYEIKI 86 (196)
Q Consensus 66 ~~~~~~~~~l~~~gi~~ev~V 86 (196)
+.|.+++..|++.|++|+..-
T Consensus 11 p~c~kv~~~L~~~gi~y~~~~ 31 (77)
T cd03040 11 PFCCKVRAFLDYHGIPYEVVE 31 (77)
T ss_pred HHHHHHHHHHHHCCCceEEEE
Confidence 899999999999999999763
No 453
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=38.53 E-value=1.3e+02 Score=29.45 Aligned_cols=54 Identities=22% Similarity=0.376 Sum_probs=45.4
Q ss_pred CeEEEEE---cCCCCHHHH------HHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC
Q 029271 53 PIVGIIM---ESDLDLPVM------NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 106 (196)
Q Consensus 53 ~~V~Iim---GS~SD~~~~------~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~ 106 (196)
+.++|++ ||-+|+|-- ++....|++.|=||-+-+.|.|-..+++.++.++++.+
T Consensus 145 STIGiVVTTDGSi~dipRe~Y~eAEervI~ELk~igKPFvillNs~~P~s~et~~L~~eL~ek 207 (492)
T PF09547_consen 145 STIGIVVTTDGSITDIPRENYVEAEERVIEELKEIGKPFVILLNSTKPYSEETQELAEELEEK 207 (492)
T ss_pred CceeEEEecCCCccCCChHHHHHHHHHHHHHHHHhCCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3566665 999998753 46778899999999999999999999999999988653
No 454
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=38.36 E-value=59 Score=27.48 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEcccCCch-------HHHHHHHHHhhCCCeEEEE
Q 029271 64 DLPVMNDAARTLSDFGVPYEIKILPPHQNCK-------EALSYALSAKERGIKIIIV 113 (196)
Q Consensus 64 D~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~-------~~~~~~~~~e~~~~~V~Ia 113 (196)
|.+.+++..+.|++ .+|+-|++.|-..+ +..++++++...|+++||+
T Consensus 158 ~~~~i~~~i~~lr~---~~D~vIv~~H~G~e~~~~p~~~~~~~A~~l~~~G~DvIiG 211 (239)
T smart00854 158 DREKILADIARARK---KADVVIVSLHWGVEYQYEPTDEQRELAHALIDAGADVVIG 211 (239)
T ss_pred CHHHHHHHHHHHhc---cCCEEEEEecCccccCCCCCHHHHHHHHHHHHcCCCEEEc
Confidence 44555555555554 47999999997654 3466777776678998884
No 455
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=38.30 E-value=1.7e+02 Score=26.45 Aligned_cols=56 Identities=29% Similarity=0.405 Sum_probs=41.4
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCe-EEEE
Q 029271 54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIK-IIIV 113 (196)
Q Consensus 54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~-V~Ia 113 (196)
.|-||.-+.||.+...++..-+ .+|-.|.+.|+|+--|+. .++++.+ ..|++ |+||
T Consensus 8 DVRIiVEGAsDvE~iSkalQr~-aLG~eYnITisSIiPTT~--~eIA~ra-aeGADlvlIA 64 (290)
T COG4026 8 DVRIIVEGASDVEVISKALQRL-ALGSEYNITISSIIPTTN--VEIAKRA-AEGADLVLIA 64 (290)
T ss_pred eEEEEeeccchHHHHHHHHHHh-hhcccceeEEEeeccCch--HHHHHHh-hccCCEEEEe
Confidence 6999999999999988876553 688899999999876655 3455443 34675 5555
No 456
>TIGR02257 cobalto_cobN cobaltochelatase, CobN subunit.
Probab=38.28 E-value=2.9e+02 Score=29.74 Aligned_cols=106 Identities=16% Similarity=0.183 Sum_probs=0.0
Q ss_pred CCCCeEEEEEcCCC----CHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchh---
Q 029271 50 ADAPIVGIIMESDL----DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS--- 122 (196)
Q Consensus 50 ~~~~~V~IimGS~S----D~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~--- 122 (196)
+..++|+|+.-..- |..+.....+.|++-|+.+---.++--+.++....+.+......+++||...|.+-+-+
T Consensus 189 ~~~p~vgilfyr~~~~~~~~~~idali~~Le~~G~~~ipvf~~sl~~~~~~~~~~~~~~~~~vd~iin~~~F~~~~~~~~ 268 (1122)
T TIGR02257 189 EKGPRVGILFYRSLLLAGDTALIEALIDALRQRGLNPVPIFVSSLKDPAVQAGLLDALKEEDPALIITTTGFASSNEQAD 268 (1122)
T ss_pred CCCCEEEEEEehhhhhcCCcHHHHHHHHHHHHCCCeEEEEEeCCCCchhHHHHHHHhccCCCCcEEEECCcccccCCcch
Q ss_pred --HhhhhccCCcEEEecCCCCC----------CChhhhhhhhcCC
Q 029271 123 --GVAAANSQILVIRVPLLSED----------WSEDDVINSIRMP 155 (196)
Q Consensus 123 --gvvA~~t~~PVIgvP~~~~~----------~~G~DLlS~lqmP 155 (196)
.-+=.....|||....+... ++..|+.-.+-||
T Consensus 269 ~~~~~l~~l~vPVlq~i~~~~s~~~W~~s~~Gl~~~d~~~~ValP 313 (1122)
T TIGR02257 269 NGETLWDSLGVPVLQVISSNTSREVWEDSSRGLAPRDLAMHVVLP 313 (1122)
T ss_pred hhHHHHHHCCCCEEEeecCCCCHHHHHhCCCCCCHHHHHHheech
No 457
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=38.18 E-value=1.6e+02 Score=25.95 Aligned_cols=63 Identities=17% Similarity=0.181 Sum_probs=43.8
Q ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhCCC-eEEEEEccc------------CCchHHHHHHHHHhhC-CCeEEEEec
Q 029271 52 APIVGIIMESDLDLPVMNDAARTLSDFGVP-YEIKILPPH------------QNCKEALSYALSAKER-GIKIIIVGD 115 (196)
Q Consensus 52 ~~~V~IimGS~SD~~~~~~~~~~l~~~gi~-~ev~V~SaH------------R~p~~~~~~~~~~e~~-~~~V~IavA 115 (196)
.|.++.+.|+ .|.+...++++.+++.|.. +|+.+.+.| +.|+.+.++++...+. ...|++=+.
T Consensus 100 ~p~i~si~G~-~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~ 176 (299)
T cd02940 100 KILIASIMCE-YNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLT 176 (299)
T ss_pred CeEEEEecCC-CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECC
Confidence 4678888887 3556666777777888875 688888776 3578888888877542 345665444
No 458
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.
Probab=38.13 E-value=2.7e+02 Score=25.79 Aligned_cols=109 Identities=7% Similarity=0.056 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHH--------HHHHHhhCCC---eEE-EEecCCCCchhHhhhhccC
Q 029271 63 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALS--------YALSAKERGI---KII-IVGDGVEAHLSGVAAANSQ 130 (196)
Q Consensus 63 SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~--------~~~~~e~~~~---~V~-IavAG~sa~L~gvvA~~t~ 130 (196)
.+-+.++++.+..+++|++..++++- ++++... .++.+++.|. +++ +=+...+..---.++ .+.
T Consensus 201 ~s~~~l~~~~~lA~~~~~~i~~H~~E---~~~e~~~~~~~~g~~~~~~l~~~G~l~~~~~~~H~~~~~~~d~~~la-~~g 276 (441)
T TIGR03314 201 VSDAGLEMCREAVQATGRGFHIHVAE---DIYDVEDSHHKYGKDIVERLADFGLLGSKTLAAHCIYLSDREIELLN-ETD 276 (441)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCC---CHHHHHHHHHHcCCCHHHHHHHCCCCCCCeEEEEEecCCHHHHHHHH-HcC
Confidence 34578999999989999999888763 2333221 2233344444 333 333333433333443 345
Q ss_pred CcEEEecCCCCCC-Chhh-hhhhhcCCCCCeeeEEecCCh----hhHHHHHHHH
Q 029271 131 ILVIRVPLLSEDW-SEDD-VINSIRMPSHVQVASVPRNNA----KNAALYAVKV 178 (196)
Q Consensus 131 ~PVIgvP~~~~~~-~G~D-LlS~lqmPsGvpvatV~I~~~----~nAA~~AaqI 178 (196)
.-|+.||.++-.+ .|+- +..++. .|++|+ +|.|+. +....+|+.+
T Consensus 277 ~~v~~cP~sn~~l~~G~~p~~~~~~--~Gv~v~-LGtD~~~~d~~~em~~a~~~ 327 (441)
T TIGR03314 277 TFVVHNPESNMGNAVGYNPVLRMFK--NGILLG-LGTDGYTSDMFESLKFANFK 327 (441)
T ss_pred CcEEECHHHHhhhccCCCCHHHHHH--CCCEEE-EcCCCCCcCHHHHHHHHHHH
Confidence 6799999886544 4666 777776 788877 466643 4444445444
No 459
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=38.08 E-value=58 Score=30.32 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=33.0
Q ss_pred CCeEEEEE---cCCCCHHHHHHHHHHHHHhCCCeEEEE-EcccCCchHH
Q 029271 52 APIVGIIM---ESDLDLPVMNDAARTLSDFGVPYEIKI-LPPHQNCKEA 96 (196)
Q Consensus 52 ~~~V~Iim---GS~SD~~~~~~~~~~l~~~gi~~ev~V-~SaHR~p~~~ 96 (196)
++.+++++ |+.-.++-++|++++|+++|||.-+.- .+.-|.|-..
T Consensus 156 ~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~ 204 (382)
T COG1103 156 PPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSG 204 (382)
T ss_pred CceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeeccccccc
Confidence 45677777 888899999999999999999965432 2244555444
No 460
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=38.07 E-value=2.4e+02 Score=23.87 Aligned_cols=76 Identities=12% Similarity=0.044 Sum_probs=61.9
Q ss_pred EEEEcCCCCHHHHHHHHHHHHHhCC-----CeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccC
Q 029271 56 GIIMESDLDLPVMNDAARTLSDFGV-----PYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQ 130 (196)
Q Consensus 56 ~IimGS~SD~~~~~~~~~~l~~~gi-----~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~ 130 (196)
.|+.|..=|-..++.+...|..++- +..+.|.|.=-....-..+...+..-..+|...+-|.++.-++++..-.+
T Consensus 27 iifl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~~~~V~t~~~G~AaS~AslIl~aG~ 106 (196)
T PRK12551 27 IIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHVKPDVHTVCVGLAASMGAFLLCAGA 106 (196)
T ss_pred EEEECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhcCCCEEEEEEEEehhHHHHHHhCCC
Confidence 3566777888899999999988763 57899999988888888888888776678888888999999999987655
Q ss_pred C
Q 029271 131 I 131 (196)
Q Consensus 131 ~ 131 (196)
.
T Consensus 107 ~ 107 (196)
T PRK12551 107 K 107 (196)
T ss_pred C
Confidence 4
No 461
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=37.95 E-value=1.6e+02 Score=25.33 Aligned_cols=57 Identities=14% Similarity=0.049 Sum_probs=40.0
Q ss_pred eEEEEEcCCCCH--------------HHHHHHHHHHHHhCCCeEEEEEcccCC-chHHHHHHHHHhhCCCeE
Q 029271 54 IVGIIMESDLDL--------------PVMNDAARTLSDFGVPYEIKILPPHQN-CKEALSYALSAKERGIKI 110 (196)
Q Consensus 54 ~V~IimGS~SD~--------------~~~~~~~~~l~~~gi~~ev~V~SaHR~-p~~~~~~~~~~e~~~~~V 110 (196)
...-+..|.||. +-+.++.+.+++.|....+...-+.|. ++.+.++++.+.+-|++.
T Consensus 84 ~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 155 (259)
T cd07939 84 TAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADR 155 (259)
T ss_pred CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCE
Confidence 344445588887 345566677778998766666666654 788888999888888854
No 462
>PRK05854 short chain dehydrogenase; Provisional
Probab=37.88 E-value=1.1e+02 Score=26.71 Aligned_cols=27 Identities=15% Similarity=0.089 Sum_probs=16.9
Q ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhCC
Q 029271 52 APIVGIIMESDLDLPVMNDAARTLSDFGV 80 (196)
Q Consensus 52 ~~~V~IimGS~SD~~~~~~~~~~l~~~gi 80 (196)
.++++||+|+++ .+..++++.|.+-|.
T Consensus 13 ~gk~~lITGas~--GIG~~~a~~La~~G~ 39 (313)
T PRK05854 13 SGKRAVVTGASD--GLGLGLARRLAAAGA 39 (313)
T ss_pred CCCEEEEeCCCC--hHHHHHHHHHHHCCC
Confidence 456777777766 445666666665553
No 463
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=37.81 E-value=73 Score=24.36 Aligned_cols=44 Identities=11% Similarity=0.289 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEE
Q 029271 68 MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 112 (196)
Q Consensus 68 ~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~I 112 (196)
.+++.+.+++.+++ ++-|+-.....+++.++++++++.+++|.+
T Consensus 130 ~~~l~~~~~~~~id-~v~ial~~~~~~~i~~ii~~~~~~~v~v~~ 173 (175)
T PF13727_consen 130 LDDLPELVREHDID-EVIIALPWSEEEQIKRIIEELENHGVRVRV 173 (175)
T ss_dssp GGGHHHHHHHHT---EEEE--TTS-HHHHHHHHHHHHTTT-EEEE
T ss_pred HHHHHHHHHhCCCC-EEEEEcCccCHHHHHHHHHHHHhCCCEEEE
Confidence 35566677777777 677776666677888888888888887765
No 464
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=37.77 E-value=54 Score=30.61 Aligned_cols=88 Identities=22% Similarity=0.154 Sum_probs=61.2
Q ss_pred CeEEEEEcCCCCHHHHHH----HHHHHHHhCCCeEEE--------------EEcccCCch----------HHHHHHHHHh
Q 029271 53 PIVGIIMESDLDLPVMND----AARTLSDFGVPYEIK--------------ILPPHQNCK----------EALSYALSAK 104 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~----~~~~l~~~gi~~ev~--------------V~SaHR~p~----------~~~~~~~~~e 104 (196)
..|+|...++-|.-+-.. +...|++ ||..-+= =.+.|...+ +...++.-.+
T Consensus 92 rp~~IhLagTGDh~f~rR~~l~a~pLl~~-gi~s~~le~Pyyg~RkP~~Q~~s~l~~VsDl~~~g~~~i~E~~~Ll~Wl~ 170 (348)
T PF09752_consen 92 RPVCIHLAGTGDHGFWRRRRLMARPLLKE-GIASLILENPYYGQRKPKDQRRSSLRNVSDLFVMGRATILESRALLHWLE 170 (348)
T ss_pred CceEEEecCCCccchhhhhhhhhhHHHHc-CcceEEEecccccccChhHhhcccccchhHHHHHHhHHHHHHHHHHHHHH
Confidence 358889999999665543 4445566 8853221 122222222 3334555566
Q ss_pred hCCC-eEEEEecCCCCchhHhhhhccCCcEEEecCCCC
Q 029271 105 ERGI-KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSE 141 (196)
Q Consensus 105 ~~~~-~V~IavAG~sa~L~gvvA~~t~~PVIgvP~~~~ 141 (196)
.+|+ .+-|++--|-++.+.+.|++.+.||--||+.+.
T Consensus 171 ~~G~~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~ 208 (348)
T PF09752_consen 171 REGYGPLGLTGISMGGHMAALAASNWPRPVALVPCLSW 208 (348)
T ss_pred hcCCCceEEEEechhHhhHHhhhhcCCCceeEEEeecc
Confidence 7788 799998889999999999999999999999863
No 465
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=37.73 E-value=2.5e+02 Score=23.61 Aligned_cols=14 Identities=0% Similarity=-0.268 Sum_probs=7.0
Q ss_pred HccCCHHHHHHHHH
Q 029271 179 LGIADEDLLERIRK 192 (196)
Q Consensus 179 La~~d~~l~~kl~~ 192 (196)
+...+++.+.+++.
T Consensus 327 ~~~~~~~~~~~~~~ 340 (355)
T cd03819 327 ILSLLPEGRAKMFA 340 (355)
T ss_pred HHhhCHHHHHHHHH
Confidence 33345666555543
No 466
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=37.73 E-value=87 Score=25.38 Aligned_cols=71 Identities=21% Similarity=0.291 Sum_probs=43.0
Q ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCC
Q 029271 52 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI 131 (196)
Q Consensus 52 ~~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~ 131 (196)
.++|+++.=. +..+-++.+. +-||+ ++..... .+++++...++++..+|++|||+.. +..=+|..-.+
T Consensus 77 ~~~Iavv~~~-~~~~~~~~~~---~ll~~--~i~~~~~-~~~~e~~~~i~~~~~~G~~viVGg~-----~~~~~A~~~gl 144 (176)
T PF06506_consen 77 GPKIAVVGYP-NIIPGLESIE---ELLGV--DIKIYPY-DSEEEIEAAIKQAKAEGVDVIVGGG-----VVCRLARKLGL 144 (176)
T ss_dssp TSEEEEEEES-S-SCCHHHHH---HHHT---EEEEEEE-SSHHHHHHHHHHHHHTT--EEEESH-----HHHHHHHHTTS
T ss_pred CCcEEEEecc-cccHHHHHHH---HHhCC--ceEEEEE-CCHHHHHHHHHHHHHcCCcEEECCH-----HHHHHHHHcCC
Confidence 4688888642 2222233333 44577 4444433 4689999999999999999999854 33455666677
Q ss_pred cEE
Q 029271 132 LVI 134 (196)
Q Consensus 132 PVI 134 (196)
|.+
T Consensus 145 ~~v 147 (176)
T PF06506_consen 145 PGV 147 (176)
T ss_dssp EEE
T ss_pred cEE
Confidence 743
No 467
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=37.51 E-value=69 Score=23.92 Aligned_cols=29 Identities=14% Similarity=0.407 Sum_probs=23.2
Q ss_pred EEEEcCCCCHHHHHHHHHHHHHhCCCeEE
Q 029271 56 GIIMESDLDLPVMNDAARTLSDFGVPYEI 84 (196)
Q Consensus 56 ~IimGS~SD~~~~~~~~~~l~~~gi~~ev 84 (196)
.++.+.+.|..+.+.+...|++.||||..
T Consensus 32 ~v~iA~Da~~~vv~~l~~lceek~Ip~v~ 60 (84)
T PRK13600 32 SLIIAEDVEVYLMTRVLSQINQKNIPVSF 60 (84)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 44556666677999999999999999764
No 468
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=37.50 E-value=2.3e+02 Score=23.21 Aligned_cols=100 Identities=11% Similarity=-0.115 Sum_probs=62.0
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHH----HhCCCeEEE--------EEccc--CCchHHHHHHHHHhhCCCe-EEEEecCC
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLS----DFGVPYEIK--------ILPPH--QNCKEALSYALSAKERGIK-IIIVGDGV 117 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~----~~gi~~ev~--------V~SaH--R~p~~~~~~~~~~e~~~~~-V~IavAG~ 117 (196)
.+|.+|+||.+.-.+.....+.+. ..+...... ---.+ ..|+.+.++.+.... ++ +||+.-=-
T Consensus 1 ~kil~i~GS~r~~S~~~~la~~~~~~l~~~~~~~~~~~~~~lP~~~~d~~~~~~p~~v~~~~~~i~~--aD~li~~tPeY 78 (184)
T COG0431 1 MKILIISGSLRRGSFNRALAEAAAKLLPAGGEVEVEFDDLDLPLYNEDLEADGLPPAVQALREAIAA--ADGLIIATPEY 78 (184)
T ss_pred CeEEEEeccCcccchHHHHHHHHHHhhcccCceEEEecccccCCCCcchhhccCCHHHHHHHHHHHh--CCEEEEECCcc
Confidence 379999999999988877666664 333211111 01123 578888888887765 55 44444445
Q ss_pred CCchhHhh---------hhccCCcEEEecCCCCCCChh------h-hhhhhcC
Q 029271 118 EAHLSGVA---------AANSQILVIRVPLLSEDWSED------D-VINSIRM 154 (196)
Q Consensus 118 sa~L~gvv---------A~~t~~PVIgvP~~~~~~~G~------D-LlS~lqm 154 (196)
.++.||++ .....+||.-+=.+.+..+|+ - +++.+.|
T Consensus 79 n~s~pg~lKnaiD~l~~~~~~~Kpv~~~~~s~g~~~~~~a~~~Lr~vl~~~~~ 131 (184)
T COG0431 79 NGSYPGALKNAIDWLSREALGGKPVLLLGTSGGGAGGLRAQNQLRPVLSFLGA 131 (184)
T ss_pred CCCCCHHHHHHHHhCCHhHhCCCcEEEEecCCCchhHHHHHHHHHHHHHhcCc
Confidence 66777765 235678877666666655553 3 6666665
No 469
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=37.50 E-value=86 Score=23.64 Aligned_cols=38 Identities=13% Similarity=0.130 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHH
Q 029271 65 LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALS 102 (196)
Q Consensus 65 ~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~ 102 (196)
=+.|.+|.+.|++.|++|+++ +..---+.+++.++++.
T Consensus 9 C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~~ 47 (105)
T cd03035 9 CDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLAK 47 (105)
T ss_pred CHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHHH
Confidence 367999999999999999865 44444456666667653
No 470
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=37.43 E-value=1.1e+02 Score=27.53 Aligned_cols=102 Identities=16% Similarity=0.076 Sum_probs=56.6
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCC-Cchh---------
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLS--------- 122 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~s-a~L~--------- 122 (196)
+.++++..+.-+.+. .+.|++.|+.+-..|.|. ++. +.+++.|+++||+-..-+ +|.+
T Consensus 114 ~~~v~~~~G~p~~~~----i~~l~~~gi~v~~~v~s~----~~A----~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L 181 (330)
T PF03060_consen 114 PDVVSFGFGLPPPEV----IERLHAAGIKVIPQVTSV----REA----RKAAKAGADAIVAQGPEAGGHRGFEVGSTFSL 181 (330)
T ss_dssp -SEEEEESSSC-HHH----HHHHHHTT-EEEEEESSH----HHH----HHHHHTT-SEEEEE-TTSSEE---SSG-HHHH
T ss_pred eEEEEeecccchHHH----HHHHHHcCCccccccCCH----HHH----HHhhhcCCCEEEEeccccCCCCCccccceeeH
Confidence 456666655554443 455678898777777654 443 345567899888764332 2333
Q ss_pred -HhhhhccCCcEEEecCCCCCCChhhhhhhhcC-CCCCeeeEEecCChh
Q 029271 123 -GVAAANSQILVIRVPLLSEDWSEDDVINSIRM-PSHVQVASVPRNNAK 169 (196)
Q Consensus 123 -gvvA~~t~~PVIgvP~~~~~~~G~DLlS~lqm-PsGvpvatV~I~~~~ 169 (196)
+.+......|||. .++-.+|.++...+.| ..|+-++|..+...|
T Consensus 182 ~~~v~~~~~iPVia---AGGI~dg~~iaaal~lGA~gV~~GTrFl~t~E 227 (330)
T PF03060_consen 182 LPQVRDAVDIPVIA---AGGIADGRGIAAALALGADGVQMGTRFLATEE 227 (330)
T ss_dssp HHHHHHH-SS-EEE---ESS--SHHHHHHHHHCT-SEEEESHHHHTSTT
T ss_pred HHHHhhhcCCcEEE---ecCcCCHHHHHHHHHcCCCEeecCCeEEeccc
Confidence 1344456788885 3445577788888888 888877777554433
No 471
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=37.39 E-value=1.3e+02 Score=21.45 Aligned_cols=34 Identities=12% Similarity=0.225 Sum_probs=23.1
Q ss_pred EcCCCCHHHHHHHHHHHHHhCCC---eEEEEEcccCC
Q 029271 59 MESDLDLPVMNDAARTLSDFGVP---YEIKILPPHQN 92 (196)
Q Consensus 59 mGS~SD~~~~~~~~~~l~~~gi~---~ev~V~SaHR~ 92 (196)
+=|.+.=|+|.++++.|++++++ ++......++.
T Consensus 4 vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~ 40 (86)
T TIGR02183 4 IFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAE 40 (86)
T ss_pred EEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCC
Confidence 33556789999999999999653 23444445543
No 472
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=37.38 E-value=1.7e+02 Score=23.65 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=42.1
Q ss_pred CCCeEEEEEcCCCCHH---HHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh
Q 029271 51 DAPIVGIIMESDLDLP---VMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA 126 (196)
Q Consensus 51 ~~~~V~IimGS~SD~~---~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA 126 (196)
...+|++++|+..+.. -.+-..+.+++.|++.+.. +..-.-.++...+.++++-+++.+.|++.... ...|++.
T Consensus 115 g~~~I~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~av~~~~d~--~a~gv~~ 192 (265)
T cd06299 115 GHKKIGYISGPQDTSTGRERLEAFRQACASLGLEVNEDLVVLGGYSQESGYAGATKLLDQGATAIIAGDSM--MTIGAIR 192 (265)
T ss_pred CCCcEEEEeCCCCcccHHHHHHHHHHHHHHCCCCCChHhEEecCcchHHHHHHHHHHHcCCCCEEEEcCcH--HHHHHHH
Confidence 3458999998775432 2344566777888764432 11112234555566666554456777764432 3335555
Q ss_pred hcc
Q 029271 127 ANS 129 (196)
Q Consensus 127 ~~t 129 (196)
+.-
T Consensus 193 al~ 195 (265)
T cd06299 193 AIH 195 (265)
T ss_pred HHH
Confidence 543
No 473
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=37.37 E-value=49 Score=29.14 Aligned_cols=70 Identities=19% Similarity=0.143 Sum_probs=38.8
Q ss_pred eEEEEE-cCCCCHHHHHHHHHHH----HHh-CCCeEEEEEcccC-CchHHHHHHHHHhhCCCeEEEEec-CCCCchhHhh
Q 029271 54 IVGIIM-ESDLDLPVMNDAARTL----SDF-GVPYEIKILPPHQ-NCKEALSYALSAKERGIKIIIVGD-GVEAHLSGVA 125 (196)
Q Consensus 54 ~V~Iim-GS~SD~~~~~~~~~~l----~~~-gi~~ev~V~SaHR-~p~~~~~~~~~~e~~~~~V~IavA-G~sa~L~gvv 125 (196)
+|+++. |...|...-+.+.+-+ +++ |+ ++...-.-. +++...+.++++.++|+++||+.. ..+..|.-+.
T Consensus 3 ~v~~~~~g~~~D~g~n~~~~~G~~~~~~~~~~i--~~~~~e~~~~~~~~~~~~~~~~~~~g~dlIi~~g~~~~~~~~~vA 80 (306)
T PF02608_consen 3 KVALLDPGGINDKGFNQSAYEGLKRAEKELDGI--EIIYVENVPETDADYEEAIRQLADQGYDLIIGHGFEYSDALQEVA 80 (306)
T ss_dssp EEEEESSS-CCCSSHHHHHHHHHHHHHHHCTTE--EEEEEES-S-TCHHHHHHHHHHHHTT-SEEEEESGGGHHHHHHHH
T ss_pred EEEEEECCCCCCccHHHHHHHHHHHHHHHcCCc--eEEEEecCCccHHHHHHHHHHHHHcCCCEEEEccHHHHHHHHHHH
Confidence 344444 7778866555444443 456 44 333332332 567777777888888888777755 4455555444
No 474
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=37.03 E-value=2.1e+02 Score=22.73 Aligned_cols=77 Identities=16% Similarity=0.179 Sum_probs=49.9
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEc---ccCCchHHHHHHHHH-hhCCCeEEEEecC-CCCchhHhhhhc
Q 029271 54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSA-KERGIKIIIVGDG-VEAHLSGVAAAN 128 (196)
Q Consensus 54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~S---aHR~p~~~~~~~~~~-e~~~~~V~IavAG-~sa~L~gvvA~~ 128 (196)
.+++++|...|.. .+.+..+|..--+.+.. .+..|+...+.+.++ ++.+.++++..+- ....|++.+|+.
T Consensus 31 v~~v~~G~~~~~~-----~~~~~~~Gad~v~~~~~~~~~~~~~~~~a~al~~~i~~~~p~~Vl~~~t~~g~~la~rlAa~ 105 (168)
T cd01715 31 VTALVIGSGAEAV-----AAALKAYGADKVLVAEDPALAHYLAEPYAPALVALAKKEKPSHILAGATSFGKDLAPRVAAK 105 (168)
T ss_pred EEEEEECCChHHH-----HHHHHhcCCCEEEEecChhhcccChHHHHHHHHHHHHhcCCCEEEECCCccccchHHHHHHH
Confidence 5778888865432 33345789874444432 345677777766665 4445665555444 455899999999
Q ss_pred cCCcEEE
Q 029271 129 SQILVIR 135 (196)
Q Consensus 129 t~~PVIg 135 (196)
...|++.
T Consensus 106 L~~~~vt 112 (168)
T cd01715 106 LDVGLIS 112 (168)
T ss_pred hCCCcee
Confidence 8888764
No 475
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=37.03 E-value=2.1e+02 Score=23.16 Aligned_cols=67 Identities=10% Similarity=0.055 Sum_probs=38.2
Q ss_pred cCCCCeEEEEEcCCCCH----HHHHHHHHHHHHhCCCeEE-EEEcccCCchHHHHHHHHHhh--CCCeEEEEec
Q 029271 49 AADAPIVGIIMESDLDL----PVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKE--RGIKIIIVGD 115 (196)
Q Consensus 49 ~~~~~~V~IimGS~SD~----~~~~~~~~~l~~~gi~~ev-~V~SaHR~p~~~~~~~~~~e~--~~~~V~IavA 115 (196)
.....+|+++.|+..+. ...+...+.|++.|+++.. .+.+-.-..+...+.+.++-. ...++|++..
T Consensus 113 ~~g~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 186 (268)
T cd06273 113 ALGHRRIAMIFGPTQGNDRARARRAGVRAALAEAGLELPELWQVEAPYSIADGRAALRQLLEQPPRPTAVICGN 186 (268)
T ss_pred HCCCCeEEEEeccccCCccHHHHHHHHHHHHHHcCCCCCHHHeeeCCCcHHHHHHHHHHHHcCCCCCCEEEEcC
Confidence 33445899998765332 4566777888998876542 233322334444454444433 2357777743
No 476
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=37.01 E-value=94 Score=27.01 Aligned_cols=124 Identities=13% Similarity=0.086 Sum_probs=77.0
Q ss_pred cccCCccchhhhhhhhhhhhccccCCCCCccccc----ccc-------c-cccccCCCCeEEEEEcCCCCHHHHHHHHHH
Q 029271 7 NHQLSSRKKTLMVTLQLLRCQIVYVPAACPSTKS----CLP-------R-FLLLAADAPIVGIIMESDLDLPVMNDAART 74 (196)
Q Consensus 7 ~~~~~sgdk~l~~dkq~yr~l~~vt~~~~~~vk~----v~~-------~-~~~~~~~~~~V~IimGS~SD~~~~~~~~~~ 74 (196)
+|=|=+=+.....=+...+.|.+..|+.-+...+ ... + .........+. +++.- .+...
T Consensus 113 PH~Wldp~~~~~~a~~Ia~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~~~~~~~~~-~v~~H--------~af~Y 183 (282)
T cd01017 113 PHVWLSPVLAIQQVENIKDALIKLDPDNKEYYEKNAAAYAKKLEALDQEYRAKLAKAKGKT-FVTQH--------AAFGY 183 (282)
T ss_pred CccccCHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCe-EEEec--------ccHHH
Confidence 4556555555455556677777777766443321 111 1 11111112233 33222 23333
Q ss_pred -HHHhCCCeEEEEE----cccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCcEEEecCCC
Q 029271 75 -LSDFGVPYEIKIL----PPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLS 140 (196)
Q Consensus 75 -l~~~gi~~ev~V~----SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PVIgvP~~~ 140 (196)
++.||+.. +.+. ..=-++.++.++++.+++.++++++.=.+.+....-.+|-.+..||+.+++..
T Consensus 184 ~~~~~gl~~-~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~l~ 253 (282)
T cd01017 184 LARRYGLKQ-IAIVGVSPEVEPSPKQLAELVEFVKKSDVKYIFFEENASSKIAETLAKETGAKLLVLNPLE 253 (282)
T ss_pred HHHHCCCeE-EecccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCcEEEecccc
Confidence 36889873 3332 23356788999999999999999999999999999999999999998877654
No 477
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=36.97 E-value=69 Score=27.20 Aligned_cols=40 Identities=10% Similarity=0.096 Sum_probs=25.8
Q ss_pred CchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCcEEEecCCC
Q 029271 92 NCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLS 140 (196)
Q Consensus 92 ~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PVIgvP~~~ 140 (196)
+..++..+++ .++++|+.-....||+. ....|+|++-..+
T Consensus 188 ~l~e~~~li~-----~~~l~I~~Dsg~~HlA~----a~~~p~i~l~g~~ 227 (279)
T cd03789 188 SLRELAALLA-----RADLVVTNDSGPMHLAA----ALGTPTVALFGPT 227 (279)
T ss_pred CHHHHHHHHH-----hCCEEEeeCCHHHHHHH----HcCCCEEEEECCC
Confidence 3444444443 26899998877778774 4467888775543
No 478
>PRK08303 short chain dehydrogenase; Provisional
Probab=36.94 E-value=2e+02 Score=25.08 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=15.5
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCC
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDFGV 80 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi 80 (196)
.++++|+|+++ .+...+++.|.+-|.
T Consensus 8 ~k~~lITGgs~--GIG~aia~~la~~G~ 33 (305)
T PRK08303 8 GKVALVAGATR--GAGRGIAVELGAAGA 33 (305)
T ss_pred CCEEEEeCCCc--hHHHHHHHHHHHCCC
Confidence 45667776665 355566666655554
No 479
>PRK12939 short chain dehydrogenase; Provisional
Probab=36.83 E-value=2.2e+02 Score=22.88 Aligned_cols=52 Identities=12% Similarity=0.085 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhh--CCCeEEEEecCCC
Q 029271 66 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE--RGIKIIIVGDGVE 118 (196)
Q Consensus 66 ~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~--~~~~V~IavAG~s 118 (196)
+..++..+.++..+...++..+-. ..++.+.++.++..+ .+++++|-.||..
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~Dl-~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 95 (250)
T PRK12939 42 AEARELAAALEAAGGRAHAIAADL-ADPASVQRFFDAAAAALGGLDGLVNNAGIT 95 (250)
T ss_pred HHHHHHHHHHHhcCCcEEEEEccC-CCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 334444444444443333322222 234444555544433 2467888888763
No 480
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=36.76 E-value=3e+02 Score=24.33 Aligned_cols=60 Identities=13% Similarity=0.112 Sum_probs=28.3
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHh--CCC-eEEEEEccc--------CCchHHHHHHHHHhhC-CCeEEEEe
Q 029271 53 PIVGIIMESDLDLPVMNDAARTLSDF--GVP-YEIKILPPH--------QNCKEALSYALSAKER-GIKIIIVG 114 (196)
Q Consensus 53 ~~V~IimGS~SD~~~~~~~~~~l~~~--gi~-~ev~V~SaH--------R~p~~~~~~~~~~e~~-~~~V~Iav 114 (196)
|.++=|+|+ .-+..+-+++..+.. |.. .|+.+.+.| +.|+.+.++++...+. ...|++=+
T Consensus 93 pvivsi~g~--~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~iPv~vKl 164 (294)
T cd04741 93 PFFISVTGS--AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGVKT 164 (294)
T ss_pred eEEEECCCC--HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 344444455 233333344444444 333 455555544 2566666666665443 23444433
No 481
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=36.58 E-value=2.2e+02 Score=28.24 Aligned_cols=69 Identities=12% Similarity=0.115 Sum_probs=53.3
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEE---cccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhH
Q 029271 54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKIL---PPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG 123 (196)
Q Consensus 54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~---SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~g 123 (196)
.+.-|.-+.+|++.++++.+..++.|..++..|+ |.--+++.+.+++++++.-|++ .|+++=+++.|-+
T Consensus 112 d~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad-~i~i~Dt~G~l~P 183 (593)
T PRK14040 112 DVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVD-SLCIKDMAGLLKP 183 (593)
T ss_pred CEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCC-EEEECCCCCCcCH
Confidence 4455556889999999999999999998766555 3333789999999999998886 5666677766654
No 482
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=36.25 E-value=1.6e+02 Score=29.30 Aligned_cols=68 Identities=18% Similarity=0.169 Sum_probs=41.8
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccC-CchHHHHHHHHHhhCCCeEEEE-ecCCCCchhHhhh
Q 029271 54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQ-NCKEALSYALSAKERGIKIIIV-GDGVEAHLSGVAA 126 (196)
Q Consensus 54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR-~p~~~~~~~~~~e~~~~~V~Ia-vAG~sa~L~gvvA 126 (196)
.+.|++-+ +-...+.++++.|++-|+. ++|.+.+. .|=.. +++.+..+.+ .++|+ =++..++++.-++
T Consensus 506 ditIva~G-~~v~~aleAa~~L~~~Gi~--v~VId~~~lkPlD~-~~i~sv~k~~-~vvvveE~~~~gG~g~~v~ 575 (641)
T PRK12571 506 DVAILSVG-AHLHECLDAADLLEAEGIS--VTVADPRFVKPLDE-ALTDLLVRHH-IVVIVEEQGAMGGFGAHVL 575 (641)
T ss_pred CEEEEEec-HHHHHHHHHHHHHHhcCCC--EEEEEcCcCCCcCH-HHHHHHhhhC-CEEEEECCCCCCCHHHHHH
Confidence 45555433 6888999999999988985 56666643 22222 4455565555 44444 3455677877554
No 483
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=36.12 E-value=2.2e+02 Score=24.77 Aligned_cols=49 Identities=20% Similarity=0.317 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHHh-CCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEe
Q 029271 63 LDLPVMNDAARTLSDF-GVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 114 (196)
Q Consensus 63 SD~~~~~~~~~~l~~~-gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~Iav 114 (196)
.|.....++.+.+++. ++|.-+++.. ..+++.++++.+++.|++.|++.
T Consensus 137 ~~~~~~~eiv~~vr~~~~~Pv~vKl~~---~~~~~~~~a~~~~~~G~d~i~~~ 186 (296)
T cd04740 137 TDPEAVAEIVKAVKKATDVPVIVKLTP---NVTDIVEIARAAEEAGADGLTLI 186 (296)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEeCC---CchhHHHHHHHHHHcCCCEEEEE
Confidence 4667777777777654 9999999753 23568888888888888766553
No 484
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=36.05 E-value=56 Score=22.26 Aligned_cols=24 Identities=38% Similarity=0.750 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcc
Q 029271 66 PVMNDAARTLSDFGVPYEIKILPP 89 (196)
Q Consensus 66 ~~~~~~~~~l~~~gi~~ev~V~Sa 89 (196)
|.+.++.-.|+++|+++++.+...
T Consensus 3 P~a~Rv~i~l~~~gl~~~~~~v~~ 26 (70)
T PF13409_consen 3 PFAHRVRIALEEKGLPYEIKVVPL 26 (70)
T ss_dssp HHHHHHHHHHHHHTGTCEEEEEET
T ss_pred hHhHHHHHHHHHhCCCCEEEEEee
Confidence 678999999999999999988744
No 485
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=35.95 E-value=85 Score=23.42 Aligned_cols=41 Identities=10% Similarity=-0.127 Sum_probs=28.4
Q ss_pred EcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHH
Q 029271 59 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYAL 101 (196)
Q Consensus 59 mGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~ 101 (196)
+|+..=...++.+...|+..||+|+..=.+. .++...++.+
T Consensus 10 ~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~--d~~~r~em~~ 50 (92)
T cd03030 10 SGSTEIKKRQQEVLGFLEAKKIEFEEVDISM--NEENRQWMRE 50 (92)
T ss_pred cccHHHHHHHHHHHHHHHHCCCceEEEecCC--CHHHHHHHHH
Confidence 3555556778889999999999998665554 4555555443
No 486
>smart00642 Aamy Alpha-amylase domain.
Probab=35.88 E-value=1.6e+02 Score=23.95 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=18.5
Q ss_pred CCchHHHHHHHHHhhCCCeEEE
Q 029271 91 QNCKEALSYALSAKERGIKIII 112 (196)
Q Consensus 91 R~p~~~~~~~~~~e~~~~~V~I 112 (196)
-+.+++.++++++.++|++|++
T Consensus 67 Gt~~d~~~lv~~~h~~Gi~vil 88 (166)
T smart00642 67 GTMEDFKELVDAAHARGIKVIL 88 (166)
T ss_pred CCHHHHHHHHHHHHHCCCEEEE
Confidence 3558899999999999998774
No 487
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=35.85 E-value=3.8e+02 Score=25.28 Aligned_cols=111 Identities=13% Similarity=0.086 Sum_probs=55.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCcEEEecCCCC
Q 029271 62 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSE 141 (196)
Q Consensus 62 ~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PVIgvP~~~~ 141 (196)
..|..+++++.+.+. -+...+|..-+-++.++..++. .++.+|+ +-= =+.+.|..+-.|+|+++-..
T Consensus 290 ~dD~~~~~~l~~~~~---~~~~~~vi~~~~~~~e~~~iIs-----~~dl~ig---~Rl-Ha~I~a~~~gvP~i~i~Y~~- 356 (426)
T PRK10017 290 KDDRMVALNLRQHVS---DPARYHVVMDELNDLEMGKILG-----ACELTVG---TRL-HSAIISMNFGTPAIAINYEH- 356 (426)
T ss_pred CchHHHHHHHHHhcc---cccceeEecCCCChHHHHHHHh-----hCCEEEE---ecc-hHHHHHHHcCCCEEEeeehH-
Confidence 345555555544432 2333344433334444444443 2455554 111 24577778999999988743
Q ss_pred CCChhh-hhhhhcCCCCCeeeEEecCChhhHHHHHHHHHcc--CCHHHHHHHHHH
Q 029271 142 DWSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGI--ADEDLLERIRKY 193 (196)
Q Consensus 142 ~~~G~D-LlS~lqmPsGvpvatV~I~~~~nAA~~AaqILa~--~d~~l~~kl~~~ 193 (196)
-.+ ++..+.+|.. ++.+.+.....+. .++..+ +.+.++++|+..
T Consensus 357 ---K~~~~~~~lg~~~~----~~~~~~l~~~~Li-~~v~~~~~~r~~~~~~l~~~ 403 (426)
T PRK10017 357 ---KSAGIMQQLGLPEM----AIDIRHLLDGSLQ-AMVADTLGQLPALNARLAEA 403 (426)
T ss_pred ---HHHHHHHHcCCccE----EechhhCCHHHHH-HHHHHHHhCHHHHHHHHHHH
Confidence 244 6777777653 2333444333332 222222 334566665543
No 488
>COG4002 Predicted phosphotransacetylase [General function prediction only]
Probab=35.80 E-value=1.2e+02 Score=27.11 Aligned_cols=58 Identities=26% Similarity=0.280 Sum_probs=36.1
Q ss_pred CCeEEEEEcCC-CC----------HHHHHHHHHHHHHhCCCeE-EEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCC
Q 029271 52 APIVGIIMESD-LD----------LPVMNDAARTLSDFGVPYE-IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 119 (196)
Q Consensus 52 ~~~V~IimGS~-SD----------~~~~~~~~~~l~~~gi~~e-v~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa 119 (196)
.|+|+|++|+. -| +.-.|..++.++..|++.. .+| +++++-++| .|||++-|-++
T Consensus 137 ep~VaVlSgGRlgDlGR~~~VDrtladgEfva~~~k~~g~~v~H~~I------------LIEealkdg-nvIia~dGItG 203 (256)
T COG4002 137 EPKVAVLSGGRLGDLGRNKEVDRTLADGEFVAEHFKGNGVDVIHYGI------------LIEEALKDG-NVIIAVDGITG 203 (256)
T ss_pred CcceEEecCCcchhccCcchhhhhhhchHHHHHHHhccCceeEEeee------------EHHHHhhcC-CEEEEecCccc
Confidence 57899988763 22 2334566666666666532 222 234555566 89999999877
Q ss_pred chh
Q 029271 120 HLS 122 (196)
Q Consensus 120 ~L~ 122 (196)
-|-
T Consensus 204 NLi 206 (256)
T COG4002 204 NLI 206 (256)
T ss_pred hhh
Confidence 663
No 489
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=35.79 E-value=2.3e+02 Score=22.79 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHcc-CCHHHHHHHHH
Q 029271 169 KNAALYAVKVLGI-ADEDLLERIRK 192 (196)
Q Consensus 169 ~nAA~~AaqILa~-~d~~l~~kl~~ 192 (196)
.+..-+|..|..+ .|++.++++..
T Consensus 304 ~~~~~~~~~i~~ll~~~~~~~~~~~ 328 (348)
T cd03820 304 GDVEALAEALLRLMEDEELRKRMGA 328 (348)
T ss_pred CCHHHHHHHHHHHHcCHHHHHHHHH
Confidence 3444555555555 77887776654
No 490
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=35.72 E-value=4.1e+02 Score=25.53 Aligned_cols=133 Identities=11% Similarity=0.187 Sum_probs=73.4
Q ss_pred CeEEEEEcCCC-----CHHHHHHHHHHHHHhCCCeEEEEEcc---cCCchHHH--HHHHH---HhhCCCeEEEEecCCCC
Q 029271 53 PIVGIIMESDL-----DLPVMNDAARTLSDFGVPYEIKILPP---HQNCKEAL--SYALS---AKERGIKIIIVGDGVEA 119 (196)
Q Consensus 53 ~~V~IimGS~S-----D~~~~~~~~~~l~~~gi~~ev~V~Sa---HR~p~~~~--~~~~~---~e~~~~~V~IavAG~sa 119 (196)
+.|.|-+||.. +.+..+.+.++|+.++..+-.....- +..|+.+. +++-+ .....+++||+=+|...
T Consensus 297 g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~~~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s 376 (507)
T PHA03392 297 GVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVEAINLPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQS 376 (507)
T ss_pred cEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcCcccCCCceEEecCCCHHHHhcCCCCCEEEecCCccc
Confidence 46777778853 45688899999999987654443321 12344432 22111 11234789999777554
Q ss_pred chhHhhhhccCCcEEEecCCCCCCChhhhhhhhcCCCCCeeeEEecCChhhHHHHHHHHHcc-CCHHHHHHHHHHH
Q 029271 120 HLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGI-ADEDLLERIRKYV 194 (196)
Q Consensus 120 ~L~gvvA~~t~~PVIgvP~~~~~~~G~DLlS~lqmPsGvpvatV~I~~~~nAA~~AaqILa~-~d~~l~~kl~~~r 194 (196)
-.-++ ..-.|+|++|.......- ..-..+ .|+++. +.. +..++..+...|-.+ .|+..+++.+..+
T Consensus 377 ~~Eal---~~GvP~v~iP~~~DQ~~N--a~rv~~--~G~G~~-l~~-~~~t~~~l~~ai~~vl~~~~y~~~a~~ls 443 (507)
T PHA03392 377 TDEAI---DALVPMVGLPMMGDQFYN--TNKYVE--LGIGRA-LDT-VTVSAAQLVLAIVDVIENPKYRKNLKELR 443 (507)
T ss_pred HHHHH---HcCCCEEECCCCccHHHH--HHHHHH--cCcEEE-ecc-CCcCHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44433 366899999997532211 222223 566533 222 233444444434333 5788877766543
No 491
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=35.66 E-value=3.5e+02 Score=24.80 Aligned_cols=102 Identities=16% Similarity=0.172 Sum_probs=63.4
Q ss_pred eEEEEEc--CCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHH--------HHhhCCC----eEEEEecCCCC
Q 029271 54 IVGIIME--SDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYAL--------SAKERGI----KIIIVGDGVEA 119 (196)
Q Consensus 54 ~V~IimG--S~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~--------~~e~~~~----~V~IavAG~sa 119 (196)
.+++.-- .+++.+.++.+.+.++++|++.+++++ -+.++.....+ .+...|. .+++-+--.+-
T Consensus 184 ~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~v~iH~~---E~~~e~~~~~~~~g~~~~~~~~~~g~l~~~~~~~H~~~~~~ 260 (421)
T COG0402 184 VVGLAPHFPYTVSPELLESLDELARKYGLPVHIHLA---ETLDEVERVLEPYGARPVERLDLLGLLGSHTLLAHCVHLSE 260 (421)
T ss_pred eEEEecCCCCCCCHHHHHHHHHHHhcCCCceEEEec---CcHHHHHHHHhhcCCCHHHHHHHcCCCCCCeEEEEeccCCH
Confidence 4555544 488999999999999999999999966 33444443333 2222222 24444444443
Q ss_pred chhHhhhhccCCcEEEecCCCCCC-Chhh-hhhhhcCCCCCeee
Q 029271 120 HLSGVAAANSQILVIRVPLLSEDW-SEDD-VINSIRMPSHVQVA 161 (196)
Q Consensus 120 ~L~gvvA~~t~~PVIgvP~~~~~~-~G~D-LlS~lqmPsGvpva 161 (196)
.=--.++ .+...|+.||.++..+ +|+- +..++. .|+-++
T Consensus 261 ~e~~~l~-~~g~~v~~cP~sN~~L~sG~~p~~~~~~--~gv~v~ 301 (421)
T COG0402 261 EELELLA-ESGASVVHCPRSNLKLGSGIAPVRRLLE--RGVNVA 301 (421)
T ss_pred HHHHHHh-hCCCeEEECcchhccccCCCCCHHHHHH--cCCCEE
Confidence 3334454 8889999999998766 3433 555554 665443
No 492
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=35.56 E-value=2.4e+02 Score=25.25 Aligned_cols=62 Identities=15% Similarity=0.147 Sum_probs=41.2
Q ss_pred CeEEEEEcCCC-CHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCC-CeEEEEec
Q 029271 53 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERG-IKIIIVGD 115 (196)
Q Consensus 53 ~~V~IimGS~S-D~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~-~~V~IavA 115 (196)
.+|+||.-++. ....++...+.|++.|++...... .-.....+.+.+++.++.+ .+|||.+.
T Consensus 133 ~~vaii~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~-~~~~~~d~~~~L~~lk~~~~~~viv~~~ 196 (382)
T cd06371 133 AHVAIVSSPQDIWVETAQKLASALRAHGLPVGLVTS-MGPDEKGAREALKKVRSADRVRVVIMCM 196 (382)
T ss_pred eEEEEEEecccchHHHHHHHHHHHHHCCCcEEEEEE-ecCCHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 47888876543 235788888889999987554322 2234567777778887766 57777644
No 493
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=35.50 E-value=87 Score=23.09 Aligned_cols=29 Identities=7% Similarity=0.100 Sum_probs=24.4
Q ss_pred EEEEEcCCCCHHHHHHHHHHHHHhCCCeE
Q 029271 55 VGIIMESDLDLPVMNDAARTLSDFGVPYE 83 (196)
Q Consensus 55 V~IimGS~SD~~~~~~~~~~l~~~gi~~e 83 (196)
-.|+.+++.+-..-+++...++..+||+.
T Consensus 26 kLViiA~Da~~~~~k~i~~~c~~~~Vpv~ 54 (82)
T PRK13601 26 LQVYIAKDAEEHVTKKIKELCEEKSIKIV 54 (82)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHhCCCCEE
Confidence 45666777778999999999999999983
No 494
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=35.34 E-value=1.9e+02 Score=23.63 Aligned_cols=13 Identities=23% Similarity=0.225 Sum_probs=7.0
Q ss_pred CeEEEEEcCCCCH
Q 029271 53 PIVGIIMESDLDL 65 (196)
Q Consensus 53 ~~V~IimGS~SD~ 65 (196)
+++.+|+|..+.+
T Consensus 11 ~k~ilItGas~~I 23 (256)
T PRK06124 11 GQVALVTGSARGL 23 (256)
T ss_pred CCEEEEECCCchH
Confidence 3455666655543
No 495
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=35.24 E-value=2.6e+02 Score=23.07 Aligned_cols=58 Identities=12% Similarity=0.147 Sum_probs=35.7
Q ss_pred eEEEEEcC-CCCHHHHH----HHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEe
Q 029271 54 IVGIIMES-DLDLPVMN----DAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 114 (196)
Q Consensus 54 ~V~IimGS-~SD~~~~~----~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~Iav 114 (196)
||++|... ..+-++.. .+.+.++++|+. +.+...- .++...++++.+..++++-||..
T Consensus 1 ~Igvi~~~~~~~~~f~~~l~~gi~~~~~~~gy~--~~~~~~~-~~~~~~~~~~~l~~~~vdgiii~ 63 (260)
T cd06304 1 KVALVYDGGGGDKSFNQSAYEGLEKAEKELGVE--VKYVESV-EDADYEPNLRQLAAQGYDLIFGV 63 (260)
T ss_pred CEEEEecCCCCcchHHHHHHHHHHHHHHhcCce--EEEEecC-CHHHHHHHHHHHHHcCCCEEEEC
Confidence 46666643 23344444 555667777765 4444333 67777788888888888755544
No 496
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=35.03 E-value=85 Score=21.00 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccc
Q 029271 66 PVMNDAARTLSDFGVPYEIKILPPH 90 (196)
Q Consensus 66 ~~~~~~~~~l~~~gi~~ev~V~SaH 90 (196)
+.+.++.-.|+..|++|+.......
T Consensus 11 ~~s~~v~~~l~~~~i~~~~~~~~~~ 35 (76)
T cd03053 11 TCVRRVLLCLEEKGVDYELVPVDLT 35 (76)
T ss_pred hhHHHHHHHHHHcCCCcEEEEeCcc
Confidence 6789999999999999998776654
No 497
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=34.98 E-value=1.8e+02 Score=26.69 Aligned_cols=59 Identities=12% Similarity=0.162 Sum_probs=45.5
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccC---------CchHHHHHHHHHhhCCCeEEEEe
Q 029271 54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQ---------NCKEALSYALSAKERGIKIIIVG 114 (196)
Q Consensus 54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR---------~p~~~~~~~~~~e~~~~~V~Iav 114 (196)
+..+|-|=..+.+++++..+.|+.++ +.+.+...|. +.+++.+|.+.+++.|+.|.|--
T Consensus 259 ey~LIpGvNDs~e~a~~La~~l~~l~--~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~ 326 (345)
T PRK14457 259 EYILLGGVNDLPEHAEELANLLRGFQ--SHVNLIPYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRA 326 (345)
T ss_pred EEEEECCcCCCHHHHHHHHHHHhcCC--CeEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeC
Confidence 46677788888999999999999875 5788888876 34566677777788888777643
No 498
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.98 E-value=71 Score=28.93 Aligned_cols=50 Identities=10% Similarity=0.087 Sum_probs=33.6
Q ss_pred EEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCcEEEecCC
Q 029271 84 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 139 (196)
Q Consensus 84 v~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PVIgvP~~ 139 (196)
.+|...|..+..+.++.++ ++++|++.|...-+..=.--. --=||-|=+.
T Consensus 186 AtVt~~hs~t~~l~~~~~~-----ADIVI~AvG~p~li~~~~vk~-GavVIDVGi~ 235 (286)
T PRK14184 186 ATVTVCHSRTPDLAEECRE-----ADFLFVAIGRPRFVTADMVKP-GAVVVDVGIN 235 (286)
T ss_pred CEEEEEeCCchhHHHHHHh-----CCEEEEecCCCCcCCHHHcCC-CCEEEEeeee
Confidence 5678889888888777654 699999998877655422211 1227776654
No 499
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=34.90 E-value=83 Score=21.14 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEc
Q 029271 66 PVMNDAARTLSDFGVPYEIKILP 88 (196)
Q Consensus 66 ~~~~~~~~~l~~~gi~~ev~V~S 88 (196)
+.+.+++-.|+..|++|+..-..
T Consensus 10 p~~~~v~~~l~~~gl~~~~~~~~ 32 (74)
T cd03058 10 PFVLRVRIALALKGVPYEYVEED 32 (74)
T ss_pred chHHHHHHHHHHcCCCCEEEEeC
Confidence 68999999999999999976443
No 500
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=34.88 E-value=1.5e+02 Score=24.24 Aligned_cols=68 Identities=12% Similarity=0.070 Sum_probs=41.1
Q ss_pred cCCCCeEEEEEcCCC---CHHHHHHHHHHHHHhCCCe-EEEEEcccCCchHHHHHHHHHhhCCCeEEEEecC
Q 029271 49 AADAPIVGIIMESDL---DLPVMNDAARTLSDFGVPY-EIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 116 (196)
Q Consensus 49 ~~~~~~V~IimGS~S---D~~~~~~~~~~l~~~gi~~-ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG 116 (196)
.....+++++.|... .....+...+.|++.|+++ +..+...+.+.+...+..+++...+.+.||+...
T Consensus 119 ~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~ai~~~~d 190 (273)
T cd06292 119 ALGHRRIGFASGPGRTVPRRRKIAGFRAALEEAGLEPPEALVARGMFSVEGGQAAAVELLGSGPTAIVAASD 190 (273)
T ss_pred HCCCceEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhheEeCCCCHHHHHHHHHHHhcCCCCEEEEcCc
Confidence 334458998887532 2344566677888888865 3344444555566666666655444777776543
Done!