RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= 029271
         (196 letters)



>gnl|CDD|130230 TIGR01162, purE, phosphoribosylaminoimidazole carboxylase, PurE
           protein.  Phosphoribosylaminoimidazole carboxylase is a
           fusion protein in plants and fungi, but consists of two
           non-interacting proteins in bacteria, PurK and PurE.
           This model represents PurK, an N5-CAIR mutase [Purines,
           pyrimidines, nucleosides, and nucleotides, Purine
           ribonucleotide biosynthesis].
          Length = 156

 Score =  140 bits (356), Expect = 6e-43
 Identities = 66/143 (46%), Positives = 93/143 (65%), Gaps = 1/143 (0%)

Query: 55  VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 114
           VGIIM SD DLP M  AA  L +FG+PYE++++  H+  +  L YA  A+ERGIK+II G
Sbjct: 1   VGIIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAG 60

Query: 115 DGVEAHLSGVAAANSQILVIRVPL-LSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAAL 173
            G  AHL G+ AA + + VI VP+        D +++ ++MPS V VA+V   NA NAAL
Sbjct: 61  AGGAAHLPGMVAALTPLPVIGVPVPSKALSGLDSLLSIVQMPSGVPVATVAIGNAGNAAL 120

Query: 174 YAVKVLGIADEDLLERIRKYVEE 196
            A ++LGI D +L E++++Y E 
Sbjct: 121 LAAQILGIKDPELAEKLKEYREN 143


>gnl|CDD|144362 pfam00731, AIRC, AIR carboxylase.  Members of this family catalyze
           the decarboxylation of
           1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate
           (AIR). This family catalyze the sixth step of de novo
           purine biosynthesis. Some members of this family contain
           two copies of this domain.
          Length = 150

 Score =  137 bits (347), Expect = 1e-41
 Identities = 64/145 (44%), Positives = 93/145 (64%), Gaps = 1/145 (0%)

Query: 53  PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 112
           P VGIIM SD DLP M  AA+ L +FG+PYE++++  H+  +    YA  A+ RGIK+II
Sbjct: 1   PKVGIIMGSDSDLPTMEKAAKVLKEFGIPYEVRVVSAHRTPERLFEYAKEAEARGIKVII 60

Query: 113 VGDGVEAHLSGVAAANSQILVIRVPLLSEDWS-EDDVINSIRMPSHVQVASVPRNNAKNA 171
            G G  AHL G+ AA + + VI VP+ S+     D +++ ++MPS + VA+V    AKNA
Sbjct: 61  AGAGGAAHLPGMVAALTTLPVIGVPVKSKALGGLDSLLSIVQMPSGIPVATVAIGGAKNA 120

Query: 172 ALYAVKVLGIADEDLLERIRKYVEE 196
           AL A ++L + D +L E++  Y EE
Sbjct: 121 ALLAAQILALKDPELAEKLEAYREE 145


>gnl|CDD|223119 COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase
           [Nucleotide transport and metabolism].
          Length = 162

 Score =  137 bits (346), Expect = 2e-41
 Identities = 62/147 (42%), Positives = 92/147 (62%), Gaps = 1/147 (0%)

Query: 51  DAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKI 110
             P VGIIM S  D   M  AA  L +FGVPYE++++  H+  ++   YA  A+ERG+K+
Sbjct: 1   MPPKVGIIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKV 60

Query: 111 IIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWS-EDDVINSIRMPSHVQVASVPRNNAK 169
           II G G  AHL G+ AA + + VI VP+ S+  S  D +++ ++MP+ V VA+V   NA 
Sbjct: 61  IIAGAGGAAHLPGMVAAKTPLPVIGVPVQSKALSGLDSLLSIVQMPAGVPVATVAIGNAA 120

Query: 170 NAALYAVKVLGIADEDLLERIRKYVEE 196
           NAAL A ++L I D +L E++ ++ E 
Sbjct: 121 NAALLAAQILAIKDPELAEKLAEFREA 147


>gnl|CDD|178534 PLN02948, PLN02948, phosphoribosylaminoimidazole carboxylase.
          Length = 577

 Score =  144 bits (364), Expect = 2e-40
 Identities = 69/150 (46%), Positives = 93/150 (62%), Gaps = 1/150 (0%)

Query: 48  LAADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERG 107
           L    P+VGIIM SD DLP M DAA  L  FGVPYE+ I+  H+  +   SYA SA  RG
Sbjct: 406 LPKGTPLVGIIMGSDSDLPTMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHSRG 465

Query: 108 IKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRN 166
           +++II G G  AHL G+ A+ + + VI VP+ +      D + SI +MP  V VA+V   
Sbjct: 466 LQVIIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQMPRGVPVATVAIG 525

Query: 167 NAKNAALYAVKVLGIADEDLLERIRKYVEE 196
           NA NA L AV++LG +D DLL+++  Y E+
Sbjct: 526 NATNAGLLAVRMLGASDPDLLDKMEAYQED 555


>gnl|CDD|214965 smart01001, AIRC, AIR carboxylase.  Members of this family catalyse
           the decarboxylation of
           1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate
           (AIR). This family catalyse the sixth step of de novo
           purine biosynthesis. Some members of this family contain
           two copies of this domain.
          Length = 152

 Score =  126 bits (319), Expect = 2e-37
 Identities = 61/144 (42%), Positives = 90/144 (62%), Gaps = 3/144 (2%)

Query: 53  PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 112
           P+VGIIM S  DLPVM +AA+TL +FG+PYE+ +   H+       YA  A++RGIK+II
Sbjct: 1   PLVGIIMGSTSDLPVMEEAAKTLEEFGIPYEVGVASAHRTPDRLFEYAKEAEDRGIKVII 60

Query: 113 VGDGVEAHLSGVAAANSQILVIRVPLLSEDWS-EDDVINSIRMPSHVQVA--SVPRNNAK 169
            G G  AHL GV AA + + VI VP+ S      D +++ ++MPS + VA  ++  + A 
Sbjct: 61  AGAGGAAHLPGVVAALTTLPVIGVPVSSGYLGGLDSLLSIVQMPSGIPVATVAIGIDGAF 120

Query: 170 NAALYAVKVLGIADEDLLERIRKY 193
           NAAL A ++L + D +L  ++  Y
Sbjct: 121 NAALLAAQILALNDPELAAKLAAY 144


>gnl|CDD|224605 COG1691, COG1691, NCAIR mutase (PurE)-related proteins [General
           function prediction only].
          Length = 254

 Score = 34.7 bits (80), Expect = 0.017
 Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 8/95 (8%)

Query: 47  LLAADAPIVGIIMESDLDLPVMNDAARTLSDFGVP----YEIKILPPHQNCKEALSYALS 102
                   VG++     DLPV  +AA T  + GV     Y++ +   H+     LS    
Sbjct: 112 YEPKKGGKVGVLSAGTSDLPVAEEAAVTAEELGVEVQKVYDVGVAGIHR----LLSALKR 167

Query: 103 AKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVP 137
            K     ++IV  G+E  L  V A    + VI VP
Sbjct: 168 LKIEDADVLIVVAGMEGALPSVVAGLVDVPVIAVP 202


>gnl|CDD|107248 cd01391, Periplasmic_Binding_Protein_Type_1, Type 1 periplasmic
           binding fold superfamily.  Type 1 periplasmic binding
           fold superfamily. This model and hierarchy represent the
           ligand binding domains of the LacI family of
           transcriptional regulators, periplasmic binding proteins
           of the ABC-type transport systems, the family C
           G-protein couples receptors (GPCRs), membrane bound
           guanylyl cyclases including the family of natriuretic
           peptide receptors (NPRs), and the N-terminal
           leucine/isoleucine/valine- binding protein  (LIVBP)-like
           domains of the ionotropic glutamate receptors (iGluRs).
           In LacI-like transcriptional regulator and the bacterial
           periplasmic binding proteins the ligands are
           monosaccharides including lactose, ribose, fructose,
           xylose, arabinose, galactose/glucose, and other sugars,
           with a few exceptions.  Periplasmic sugar binding
           proteins are one of the components of ABC transporters
           and are involved in the active transport of
           water-soluble ligands. The LacI family of proteins
           consists of transcriptional regulators related to the
           lac repressor. In this case, the sugar binding domain
           binds a sugar which changes the DNA binding activity of
           the repressor domain. The periplasmic binding proteins
           are the primary receptors for chemotaxis and transport
           of many sugar based solutes. The core structures of
           periplasmic binding proteins are classified into two
           types, and they differ in number and order of beta
           strands: type 1 has  six beta strands, while type 2 has
           five beta strands per sub-domain. These two structural
           folds are thought to be distantly related via a common
           ancestor. Notably, while the N-terminal LIVBP-like
           domain of iGluRs belongs to the type 1
           periplasmic-binding fold protein superfamily, the
           glutamate-binding domain of the iGluR is structurally
           similar to the type 2 periplasmic-binding fold.
          Length = 269

 Score = 29.9 bits (67), Expect = 0.66
 Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 7/107 (6%)

Query: 71  AARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQ 130
                 + G   E+ +     + + AL       ++G+  II      + L+ V  A + 
Sbjct: 22  IELAAEEIGRGLEVILADSQSDPERALEALRDLIQQGVDGIIGPPSSSSALAVVELAAAA 81

Query: 131 ILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVK 177
                +P++S D +  D+      P   +V        + AA Y  +
Sbjct: 82  ----GIPVVSLDATAPDLTGY---PYVFRVGPDNEQAGEAAAEYLAE 121


>gnl|CDD|236259 PRK08401, PRK08401, L-aspartate oxidase; Provisional.
          Length = 466

 Score = 30.2 bits (68), Expect = 0.69
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 97  LSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPS 156
           L+ A+S  ++G  + I+G G++   S +A A      I  P+L  D     V+++IR   
Sbjct: 14  LTAAISLAKKGFDVTIIGPGIKKSNSYLAQAG-----IAFPILEGDSIRAHVLDTIRAGK 68

Query: 157 HV 158
           ++
Sbjct: 69  YI 70


>gnl|CDD|225873 COG3336, COG3336, Predicted membrane protein [Function unknown].
          Length = 299

 Score = 29.0 bits (65), Expect = 1.7
 Identities = 11/38 (28%), Positives = 16/38 (42%)

Query: 31  VPAACPSTKSCLPRFLLLAADAPIVGIIMESDLDLPVM 68
            P      ++ LP      AD  + G IM S  +LP +
Sbjct: 215 SPLYATYYRALLPWAEAPLADQQLGGGIMWSAGELPDI 252


>gnl|CDD|233074 TIGR00655, PurU, formyltetrahydrofolate deformylase.  This model
           describes formyltetrahydrofolate deformylases. The
           enzyme is a homohexamer. Sequences from a related enzyme
           formyl tetrahydrofolate-specific enzyme,
           phosphoribosylglycinamide formyltransferase, serve as an
           outgroup for phylogenetic analysis. Putative members of
           this family, scoring below the trusted cutoff, include a
           sequence from Rhodobacter capsulatus that lacks an
           otherwise conserved C-terminal region [Purines,
           pyrimidines, nucleosides, and nucleotides, Purine
           ribonucleotide biosynthesis].
          Length = 280

 Score = 27.8 bits (62), Expect = 3.8
 Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 20/113 (17%)

Query: 24  LRCQIVYVPAACPSTKSCLPRFLL------------LAADAPIVGIIMESDLDLPVMNDA 71
           L  +I  V +     +S + RF +            +  +   + ++ +  +DL V+   
Sbjct: 110 LDAEIALVISNHEDLRSLVERFGIPFHYIPATKDNRVEHEKRQLELLKQYQVDLVVLAKY 169

Query: 72  ARTLS-DFGVPYEIKILPPHQNCKEALSYA---LSAKERGIKIIIVGDGVEAH 120
            + LS DF   Y  KI+  H +   A   A     A ERG+KII    G  AH
Sbjct: 170 MQILSPDFVKRYPNKIINIHHSFLPAFIGANPYQRAYERGVKII----GATAH 218


>gnl|CDD|200477 cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in
           cyclomaltodextrinases and related proteins.
           Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase
           (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC
           3.2.1.133) catalyze the hydrolysis of alpha-(1,4)
           glycosidic linkages on a number of substrates including
           cyclomaltodextrins (CDs), pullulan, and starch. These
           enzymes hydrolyze CDs and starch to maltose and pullulan
           to panose by cleavage of alpha-1,4 glycosidic bonds
           whereas alpha-amylases essentially lack activity on CDs
           and pullulan. They also catalyze transglycosylation of
           oligosaccharides to the C3-, C4- or C6-hydroxyl groups
           of various acceptor sugar molecules. Since these
           proteins are nearly indistinguishable from each other,
           they are referred to as cyclomaltodextrinases (CMDs).
           The Alpha-amylase family comprises the largest family of
           glycoside hydrolases (GH), with the majority of enzymes
           acting on starch, glycogen, and related oligo- and
           polysaccharides. These proteins catalyze the
           transformation of alpha-1,4 and alpha-1,6 glucosidic
           linkages with retention of the anomeric center. The
           protein is described as having 3 domains: A, B, C. A is
           a (beta/alpha) 8-barrel; B is a loop between the beta 3
           strand and alpha 3 helix of A; C is the C-terminal
           extension characterized by a Greek key. The majority of
           the enzymes have an active site cleft found between
           domains A and B where a triad of catalytic residues
           (Asp, Glu and Asp) performs catalysis. Other members of
           this family have lost the catalytic activity as in the
           case of the human 4F2hc, or only have 2 residues that
           serve as the catalytic nucleophile and the acid/base,
           such as Thermus A4 beta-galactosidase with 2 Glu
           residues (GH42) and human alpha-galactosidase with 2 Asp
           residues (GH31). The family members are quite extensive
           and include: alpha amylase, maltosyltransferase,
           cyclodextrin glycotransferase, maltogenic amylase,
           neopullulanase, isoamylase, 1,4-alpha-D-glucan
           maltotetrahydrolase, 4-alpha-glucotransferase,
           oligo-1,6-glucosidase, amylosucrase, sucrose
           phosphorylase, and amylomaltase.
          Length = 389

 Score = 27.4 bits (62), Expect = 5.3
 Identities = 8/15 (53%), Positives = 12/15 (80%), Gaps = 2/15 (13%)

Query: 103 AKERGIKIIIVGDGV 117
           A +RGI++I+  DGV
Sbjct: 112 AHKRGIRVIL--DGV 124


>gnl|CDD|240854 cd12408, RRM_eIF3G_like, RNA recognition motif in eukaryotic
           translation initiation factor 3 subunit G (eIF-3G) and
           similar proteins.  This subfamily corresponds to the RRM
           of eIF-3G and similar proteins. eIF-3G, also termed
           eIF-3 subunit 4, or eIF-3-delta, or eIF3-p42, or
           eIF3-p44, is the RNA-binding subunit of eIF3, a large
           multisubunit complex that plays a central role in the
           initiation of translation by binding to the 40 S
           ribosomal subunit and promoting the binding of
           methionyl-tRNAi and mRNA. eIF-3G binds 18 S rRNA and
           beta-globin mRNA, and therefore appears to be a
           nonspecific RNA-binding protein. eIF-3G is one of the
           cytosolic targets and interacts with mature
           apoptosis-inducing factor (AIF). eIF-3G contains one RNA
           recognition motif (RRM), also termed RBD (RNA binding
           domain) or RNP (ribonucleoprotein domain). This family
           also includes yeast eIF3-p33, a homolog of vertebrate
           eIF-3G, plays an important role in the initiation phase
           of protein synthesis in yeast. It binds both, mRNA and
           rRNA, fragments due to an RRM near its C-terminus. .
          Length = 77

 Score = 25.6 bits (57), Expect = 6.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 134 IRVPLLSEDWSEDDVINSIRMPSHVQVASVPRN 166
           IRV  LSED  EDD+    R    +    + ++
Sbjct: 2   IRVTNLSEDADEDDLRELFRPFGPISRVYLAKD 34


>gnl|CDD|211334 cd02566, PseudoU_synth_RluE, Pseudouridine synthase, Escherichia
           coli RluE.  This group is comprised of bacterial
           proteins similar to E. coli RluE. Pseudouridine
           synthases catalyze the isomerization of specific
           uridines in an RNA molecule to pseudouridines
           (5-ribosyluracil, psi).  No cofactors are required.
           Escherichia coli RluE makes psi2457 in 23S RNA. psi2457
           is not universally conserved.
          Length = 168

 Score = 26.6 bits (59), Expect = 7.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 174 YAVKVLGIADEDLLERIRKYVE 195
           Y V+V G+  ED LE++R  VE
Sbjct: 70  YYVQVEGVPTEDALEQLRNGVE 91


>gnl|CDD|184004 PRK13365, PRK13365, protocatechuate 4,5-dioxygenase subunit beta;
           Provisional.
          Length = 279

 Score = 26.8 bits (59), Expect = 7.9
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 7/48 (14%)

Query: 80  VPYEIKI----LPPHQNC---KEALSYALSAKERGIKIIIVGDGVEAH 120
           VP  I +    LP  + C    +AL  A+ +    +++++VG G  +H
Sbjct: 146 VPIAINVLQYPLPTARRCYRLGQALRRAIESYPEDLRVVVVGTGGLSH 193


>gnl|CDD|237725 PRK14487, PRK14487, cbb3-type cytochrome c oxidase subunit II;
           Provisional.
          Length = 217

 Score = 26.7 bits (60), Expect = 7.9
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 60  ESDLDLPVMNDAARTLSDFGVPY 82
           E+DLD     +    L   GVPY
Sbjct: 143 ENDLDGTDTAEKMTALRVVGVPY 165


>gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family
           domain in ProteinaseK-like proteins.  The peptidase S8
           or Subtilase clan of proteases have a Asp/His/Ser
           catalytic triad that is not homologous to trypsin. This
           CD contains several members of this clan including:
           PCSK9 (Proprotein convertase subtilisin/kexin type 9),
           Proteinase_K, Proteinase_T, and other subtilisin-like
           serine proteases.  PCSK9 posttranslationally regulates
           hepatic low-density lipoprotein receptors (LDLRs) by
           binding to LDLRs on the cell surface, leading to their
           degradation. The binding site of PCSK9 has been
           localized to the epidermal growth factor-like repeat A
           (EGF-A) domain of the LDLR. Characterized Proteinases K
           are secreted endopeptidases with a high degree of
           sequence conservation.  Proteinases K are not
           substrate-specific and function in a wide variety of
           species in different pathways. It can hydrolyze keratin
           and other proteins with subtilisin-like specificity. The
           number of calcium-binding motifs found in these differ.
           Proteinase T is a novel proteinase from the fungus
           Tritirachium album Limber. The amino acid sequence of
           proteinase T as deduced from the nucleotide sequence is
           about 56% identical to that of proteinase K.
          Length = 255

 Score = 26.7 bits (60), Expect = 8.2
 Identities = 9/13 (69%), Positives = 9/13 (69%)

Query: 168 AKNAALYAVKVLG 180
           AK A L AVKVL 
Sbjct: 81  AKKANLVAVKVLD 93


>gnl|CDD|240017 cd04659, Piwi_piwi-like_ProArk, Piwi_piwi-like_ProArk: PIWI domain,
           Piwi-like subfamily found in Archaea and Bacteria. RNA
           silencing refers to a group of related gene-silencing
           mechanisms mediated by short RNA molecules, including
           siRNAs, miRNAs, and heterochromatin-related guide RNAs.
           The central component of the RNA-induced silencing
           complex (RISC) and related complexes is Argonaute. The
           PIWI domain is the C-terminal portion of Argonaute and
           consists of two subdomains, one of which provides the 5'
           anchoring of the guide RNA and the other, the catalytic
           site for slicing. This domain is also found in closely
           related proteins, including the Piwi subfamily, where it
           is believed to perform a crucial role in germline cells,
           via a similar mechanism.
          Length = 404

 Score = 27.0 bits (60), Expect = 8.4
 Identities = 18/111 (16%), Positives = 31/111 (27%), Gaps = 7/111 (6%)

Query: 43  PRFLLLAADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALS 102
           P          I+G      L   ++    + L  F            +N        L+
Sbjct: 29  PSKARREIRVAIIGTSELIGLIAALIGKLLQYLPKFPGFGGGNKNALGKNKISVFRLDLN 88

Query: 103 AKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIR 153
              +   II     V+  LS  +     ++V+    L ED  E      + 
Sbjct: 89  RSAQAEAIIEA---VDLALSESSQGVDVVIVV----LPEDLKELPEEFDLY 132


>gnl|CDD|239064 cd02151, NADPH_oxidoreductase_2, NAD(P)H:flavin oxidoreductase-like
           family 2.  A subfamily of the nitroreductase family
           containing uncharacterized proteins that are similar to
           nitroreductase. Nitroreductase catalyzes the reduction
           of nitroaromatic compounds such as nitrotoluenes,
           nitrofurans and nitroimidazoles. This process requires
           NAD(P)H as electron donor in an obligatory two-electron
           transfer and uses FMN as cofactor.  The enzyme is
           typically a homodimer. Members of this family are also
           called NADH dehydrogenase, oxygen-insensitive NAD(P)H
           nitrogenase or dihydropteridine reductase.
          Length = 162

 Score = 26.1 bits (58), Expect = 8.8
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 10/64 (15%)

Query: 131 ILVIRVPLLSEDWSEDDVINS--IRMPSH--------VQVASVPRNNAKNAALYAVKVLG 180
           I+V+  P  S+ W ED  I +  I++ +         VQ+     ++ K A  Y  ++L 
Sbjct: 75  IVVVADPRKSDVWIEDASIAAIIIQLTAQDLGLGSCWVQIRGRMHDDGKTAEEYVRRLLN 134

Query: 181 IADE 184
           I + 
Sbjct: 135 IPEH 138


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.320    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0817    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,015,326
Number of extensions: 948795
Number of successful extensions: 1328
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1320
Number of HSP's successfully gapped: 41
Length of query: 196
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 104
Effective length of database: 6,857,034
Effective search space: 713131536
Effective search space used: 713131536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.2 bits)