RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 029271
(196 letters)
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics,
joint center for structural genomics, J protein
structure initiative, PSI; 1.77A {Thermotoga maritima}
SCOP: c.23.8.1
Length = 183
Score = 145 bits (367), Expect = 1e-44
Identities = 64/149 (42%), Positives = 90/149 (60%), Gaps = 1/149 (0%)
Query: 49 AADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 108
P VGIIM SD DLPVM AA L +FG+ YEI I+ H+ YA +A+ERGI
Sbjct: 10 HHHVPRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGI 69
Query: 109 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRNN 167
++II G G AHL G+ A+ + + VI VP+ + + D + SI +MP V VA+V NN
Sbjct: 70 EVIIAGAGGAAHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAINN 129
Query: 168 AKNAALYAVKVLGIADEDLLERIRKYVEE 196
AKNA + A +LGI ++ ++++Y E
Sbjct: 130 AKNAGILAASILGIKYPEIARKVKEYKER 158
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta
protein, structural genomics, PSI-2, protein initiative;
1.70A {Mycobacterium tuberculosis}
Length = 174
Score = 143 bits (364), Expect = 3e-44
Identities = 61/149 (40%), Positives = 88/149 (59%), Gaps = 1/149 (0%)
Query: 49 AADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 108
A + P VG+IM SD D PVM DAA L++F +P E++++ H+ + SYA A RG+
Sbjct: 4 AGERPRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGL 63
Query: 109 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRNN 167
++II G G AHL G+ AA + + VI VP+ D + SI +MP+ V VA+V
Sbjct: 64 EVIIAGAGGAAHLPGMVAAATPLPVIGVPVPLGRLDGLDSLLSIVQMPAGVPVATVSIGG 123
Query: 168 AKNAALYAVKVLGIADEDLLERIRKYVEE 196
A NA L AV++LG A+ L RI + +
Sbjct: 124 AGNAGLLAVRMLGAANPQLRARIVAFQDR 152
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine
biosynthesis, lyase; 1.74A {Treponema denticola} PDB:
3rgg_A*
Length = 159
Score = 137 bits (347), Expect = 7e-42
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 3/145 (2%)
Query: 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER-GIKII 111
P+V I+M S D+ A L FG+ Y I+I H+ + +S + K+
Sbjct: 3 PLVIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLY 62
Query: 112 IVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNA 171
I G LSG + I P S+ ++ D+ +S+RMPS + A V KNA
Sbjct: 63 ITIAGRSNALSGFVDGFVKGATIACPPPSDSFAGADIYSSLRMPSGISPALV--LEPKNA 120
Query: 172 ALYAVKVLGIADEDLLERIRKYVEE 196
AL A ++ + D+++ + ++ Y+E
Sbjct: 121 ALLAARIFSLYDKEIADSVKSYMES 145
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase
subunit; purines, pyrimidines, nucleosides, nucleotides,
lyase; 2.20A {Coxiella burnetii}
Length = 169
Score = 130 bits (328), Expect = 8e-39
Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 3/151 (1%)
Query: 49 AADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 108
A + V I+M SD DL M A L G+P+E IL H+ KE + + +A RG
Sbjct: 3 AMNKIFVAILMGSDSDLSTMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGC 62
Query: 109 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRNN 167
+ I G+ AHL+G AA++ VI VP+ D + S +MP V VA
Sbjct: 63 AVFIAAAGLAAHLAGTIAAHTLKPVIGVPMAGGSLGGLDALLSTVQMPGGVPVACTAIGK 122
Query: 168 --AKNAALYAVKVLGIADEDLLERIRKYVEE 196
AKNAA+ A +++ + D+ + +++ +
Sbjct: 123 AGAKNAAILAAQIIALQDKSIAQKLVQQRTA 153
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase,
isomerase,biosynthetic protein; 1.45A {Staphylococcus
aureus subsp}
Length = 163
Score = 129 bits (326), Expect = 1e-38
Identities = 51/147 (34%), Positives = 84/147 (57%), Gaps = 3/147 (2%)
Query: 50 ADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIK 109
++A V +IM S D +M ++ L F +PYE +++ H+ K + +A A+ERGI
Sbjct: 1 SNAMKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGIN 60
Query: 110 IIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVP--RN 166
III G G AHL G+ A+ + + VI VP+ ++ D + SI +MP + VA+
Sbjct: 61 IIIAGAGGAAHLPGMVASLTTLPVIGVPIETKSLKGIDSLLSIVQMPGGIPVATTAIGAA 120
Query: 167 NAKNAALYAVKVLGIADEDLLERIRKY 193
AKNA + A ++L I + L+E++ +Y
Sbjct: 121 GAKNAGILAARMLSIQNPSLVEKLNQY 147
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine
biosynthesis, spine, lyase; 1.80A {Bacillus anthracis}
SCOP: c.23.8.1
Length = 170
Score = 127 bits (322), Expect = 6e-38
Identities = 52/144 (36%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 112
+VG+IM S D M A L + +PYE K++ H+ YA +A+ERG+K+II
Sbjct: 12 SLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVII 71
Query: 113 VGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRNN--AK 169
G G AHL G+ AA + + VI VP+ S+ + D + SI +MP V VA+V +
Sbjct: 72 AGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGST 131
Query: 170 NAALYAVKVLGIADEDLLERIRKY 193
NA L A ++LG +D+ + +
Sbjct: 132 NAGLLAAQILGSFHDDIHDALELR 155
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A
{Bacillus anthracis}
Length = 181
Score = 128 bits (323), Expect = 8e-38
Identities = 52/148 (35%), Positives = 80/148 (54%), Gaps = 3/148 (2%)
Query: 49 AADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 108
+ +VG+IM S D M A L + +PYE K++ H+ YA +A+ERG+
Sbjct: 19 SHMKSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGL 78
Query: 109 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRNN 167
K+II G G AHL G+ AA + + VI VP+ S+ + D + SI +MP V VA+V
Sbjct: 79 KVIIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGK 138
Query: 168 --AKNAALYAVKVLGIADEDLLERIRKY 193
+ NA L A ++LG +D+ + +
Sbjct: 139 AGSTNAGLLAAQILGSFHDDIHDALELR 166
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold,
structural genomics, NPPSFA; 2.31A {Methanocaldococcus
jannaschii}
Length = 157
Score = 126 bits (320), Expect = 1e-37
Identities = 42/143 (29%), Positives = 83/143 (58%), Gaps = 3/143 (2%)
Query: 54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 113
++ IIM S+ DL + A L +FGV +E+++ H+ + ++K + I
Sbjct: 1 MICIIMGSESDLKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKA---DVFIA 57
Query: 114 GDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAAL 173
G+ AHL GV A+ + VI VP+ ++ D +++S++MP + VA+V + +NAA+
Sbjct: 58 IAGLAAHLPGVVASLTTKPVIAVPVDAKLDGLDALLSSVQMPPGIPVATVGIDRGENAAI 117
Query: 174 YAVKVLGIADEDLLERIRKYVEE 196
A+++L + DE++ +++ +Y E+
Sbjct: 118 LALEILALKDENIAKKLIEYREK 140
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle,
protein stability, lyase; HET: CIT; 1.55A {Acetobacter
aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A
2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Length = 182
Score = 126 bits (319), Expect = 3e-37
Identities = 56/164 (34%), Positives = 83/164 (50%), Gaps = 3/164 (1%)
Query: 33 AACPSTKSCLPRFLLLAADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQN 92
+ S AA AP+VGIIM S D M A L++ +P+E I+ H+
Sbjct: 2 SETAPLPSASSALEDKAASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRT 61
Query: 93 CKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI 152
YA +A ERG+ +II G G AHL G+ AA +++ V+ VP+ S D + SI
Sbjct: 62 PDRLADYARTAAERGLNVIIAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSI 121
Query: 153 -RMPSHVQVASVP--RNNAKNAALYAVKVLGIADEDLLERIRKY 193
+MP V V ++ + AKNAAL A +L + + L R+ +
Sbjct: 122 VQMPGGVPVGTLAIGASGAKNAALLAASILALYNPALAARLETW 165
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural
genomics, center for structural genomics of infec
diseases, csgid; HET: MSE; 1.75A {Francisella tularensis
subsp} PDB: 3opq_A*
Length = 166
Score = 125 bits (317), Expect = 4e-37
Identities = 51/147 (34%), Positives = 83/147 (56%), Gaps = 3/147 (2%)
Query: 50 ADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIK 109
A + VG+IM S D M + L + G+ YE +++ H+ + YA +AKERG+K
Sbjct: 3 AMSVQVGVIMGSKSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLK 62
Query: 110 IIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVP--RN 166
+II G G AHL G+ AA + + V+ VP+ S + D + SI +MP+ + VA+
Sbjct: 63 VIIAGAGGAAHLPGMVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQMPAGIPVATFAIGMA 122
Query: 167 NAKNAALYAVKVLGIADEDLLERIRKY 193
AKNAAL+A +L D ++ + + ++
Sbjct: 123 GAKNAALFAASILQHTDINIAKALAEF 149
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer
(ABA) sandwich, rossmann fold, csgid, lyase, structu
genomics; 1.41A {Yersinia pestis} PDB: 1d7a_A* 1qcz_A
2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Length = 174
Score = 123 bits (312), Expect = 2e-36
Identities = 47/147 (31%), Positives = 78/147 (53%), Gaps = 3/147 (2%)
Query: 50 ADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIK 109
A + I+M S D M AA L+ VP+ ++++ H+ S+A A+ G+
Sbjct: 10 AAGVKIAIVMGSKSDWATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLH 69
Query: 110 IIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVP--RN 166
+II G+G AHL G+ AA + + V+ VP+ S S D + SI +MP + V ++ +
Sbjct: 70 VIIAGNGGAAHLPGMLAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKA 129
Query: 167 NAKNAALYAVKVLGIADEDLLERIRKY 193
A NAAL A ++L + D +L R+ +
Sbjct: 130 GAANAALLAAQILALHDTELAGRLAHW 156
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase;
2.80A {Homo sapiens}
Length = 425
Score = 122 bits (308), Expect = 2e-33
Identities = 35/147 (23%), Positives = 69/147 (46%), Gaps = 3/147 (2%)
Query: 51 DAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI-K 109
V ++M S DL + +FG+P E+++ H+ E L + GI
Sbjct: 264 SQCRVVVLMGSTSDLGHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPT 323
Query: 110 IIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAK 169
+ + G L V + N+ VI P L+ DW DV +S+R+PS + ++V + +
Sbjct: 324 VFVAVAGRSNGLGPVMSGNTAYPVISCPPLTPDWGVQDVWSSLRLPSGLGCSTV--LSPE 381
Query: 170 NAALYAVKVLGIADEDLLERIRKYVEE 196
+A +A ++ G+++ + ++R +
Sbjct: 382 GSAQFAAQIFGLSNHLVWSKLRASILN 408
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 4e-05
Identities = 42/266 (15%), Positives = 82/266 (30%), Gaps = 86/266 (32%)
Query: 2 IHLSVNHQLSSRKKTLMVTLQLLRCQIVYVPAACPSTKSCLPRF----LLLAA---DAPI 54
IH L TL+ T +L++ Y+ A K + L A +A +
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKN---YI-TARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Query: 55 V------GIIME--SDL-DL---------PVMNDAARTL-------SDFGVPYE--IKIL 87
V G + +L DL ++ +A TL D + + IL
Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 88 ---------PPHQN-CKEALS-----------YALSAKERGIKIIIVGDGVEAHLSGVAA 126
P +S Y ++AK G G+ + ++L G
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT---PGE-LRSYLKGATG 272
Query: 127 ANSQILVIRVPLLSEDWSE--DDVINSIRM------------------PSHVQVASVPRN 166
+ ++ ++ W V +I + PS ++ S+ N
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE-DSLENN 331
Query: 167 NAKNAALYAVKVLGIADEDLLERIRK 192
+ + ++ + E + + + K
Sbjct: 332 EGVPSPMLSIS--NLTQEQVQDYVNK 355
Score = 39.3 bits (91), Expect = 5e-04
Identities = 27/134 (20%), Positives = 44/134 (32%), Gaps = 40/134 (29%)
Query: 11 SSRKKTLMVTLQLLRCQIVYVPAACP--STKSCL-PRFLLLAADAPIVGI-IMESDLDLP 66
S RK L+ ++P A P S L P L+ D + D+ +P
Sbjct: 410 SERK---------LKFSNRFLPVASPFHS--HLLVPASDLINKDLVKNNVSFNAKDIQIP 458
Query: 67 VMN--DAA--RTLSDFGVP---YEIKILPPH--QNCKEALSYAL---------------S 102
V + D + R LS I LP + ++ L
Sbjct: 459 VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHR 518
Query: 103 AKE-RGIKIIIVGD 115
K+ G+++I+ G
Sbjct: 519 NKDGTGVRVIVAGT 532
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.001
Identities = 24/212 (11%), Positives = 63/212 (29%), Gaps = 50/212 (23%)
Query: 12 SRKKTLMVTLQ--LLRCQ-----IVYVPAACPSTKSCLPRFLLLAADA------------ 52
SR + + L+ LL + ++ K+ + A D
Sbjct: 132 SRLQ-PYLKLRQALLELRPAKNVLIDGVLGS--GKTWV------ALDVCLSYKVQCKMDF 182
Query: 53 PI----VGIIMESDLDLPVMNDAARTL-SDFGVPYEIKILPPH--QNCKEALSYALSAKE 105
I + + L ++ + ++ + + + L L +K
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 106 RGIKIIIVGDGVEAHLSGVAAA---NSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVAS 162
++++ V+ + A + +IL+ + D +++ +H+ +
Sbjct: 243 YENCLLVL-LNVQN--AKAWNAFNLSCKILLT-----TRFKQVTDFLSAATT-THISLDH 293
Query: 163 VPR--NNAKNAALYAVKVLGIADEDLLERIRK 192
+ +L K L +DL +
Sbjct: 294 HSMTLTPDEVKSLLL-KYLDCRPQDLPREVLT 324
Score = 28.7 bits (63), Expect = 1.6
Identities = 18/140 (12%), Positives = 40/140 (28%), Gaps = 49/140 (35%)
Query: 80 VPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 139
Y + L P+ ++AL + R K +++ GV + + + V L
Sbjct: 127 AKYNVSRLQPYLKLRQALL-----ELRPAKNVLI------D--GVLGSGKTWVALDV-CL 172
Query: 140 SED----------W-------SEDDVINSIR------MPSHVQVASVPRNNAKNAALYAV 176
S W S + V+ ++ P+ + N
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI----- 227
Query: 177 KVLGIADEDLLERIRKYVEE 196
+ +R+ ++
Sbjct: 228 -------HSIQAELRRLLKS 240
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.084
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 17/41 (41%)
Query: 14 KKTLMVTLQLLRCQIVYVPAACPSTKSCLPRFLLLAADAPI 54
KK L +L+L Y + P+ LA A +
Sbjct: 23 KK-LQASLKL------YADDSAPA----------LAIKATM 46
>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A
{Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A
2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A
2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A*
3gt4_A* 3l1k_A 3osz_A ...
Length = 279
Score = 28.3 bits (64), Expect = 1.3
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 168 AKNAALYAVKVLG 180
AK L+ VKVL
Sbjct: 85 AKKTQLFGVKVLD 97
>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle-
degrading protease, nematodes, hydrolase, secreted,
zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A
Length = 279
Score = 28.3 bits (64), Expect = 1.6
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 168 AKNAALYAVKVLG 180
AK +++ VKVL
Sbjct: 86 AKKVSIFGVKVLD 98
>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart
disease, hypercholest low density lipoprotein receptor,
autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens}
PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B
3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A
Length = 546
Score = 28.3 bits (63), Expect = 1.7
Identities = 5/13 (38%), Positives = 10/13 (76%)
Query: 168 AKNAALYAVKVLG 180
AK A++ +++VL
Sbjct: 90 AKGASMRSLRVLN 102
>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL
receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}
Length = 692
Score = 28.4 bits (63), Expect = 1.9
Identities = 5/13 (38%), Positives = 10/13 (76%)
Query: 168 AKNAALYAVKVLG 180
AK A++ +++VL
Sbjct: 242 AKGASMRSLRVLN 254
>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation,
psychrotrophic, subtilisin-like proteinase, depentent,
hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A*
Length = 284
Score = 27.9 bits (63), Expect = 2.0
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 168 AKNAALYAVKVLG 180
AKN + V+VL
Sbjct: 86 AKNVNIVGVRVLS 98
>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K,
subtilase, psychrotrophic, psychrophilic, hydrolase;
1.80A {Serratia SP}
Length = 278
Score = 27.9 bits (63), Expect = 2.0
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 168 AKNAALYAVKVLG 180
AKN + V+VL
Sbjct: 88 AKNVNVVGVRVLN 100
>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding,
inhibitor, hydrolase-hydro inhibitor complex; HET: PMS;
1.95A {Thermus aquaticus}
Length = 276
Score = 27.5 bits (62), Expect = 2.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 168 AKNAALYAVKVLG 180
AK LYAV+VL
Sbjct: 86 AKAVNLYAVRVLD 98
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable,
cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus
marinus}
Length = 696
Score = 27.8 bits (62), Expect = 2.9
Identities = 5/15 (33%), Positives = 7/15 (46%), Gaps = 2/15 (13%)
Query: 103 AKERGIKIIIVGDGV 117
R IKI++ D
Sbjct: 321 LHSRKIKIVL--DIT 333
>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like
protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP:
c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A*
Length = 310
Score = 26.9 bits (60), Expect = 4.1
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 168 AKNAALYAVKVLG 180
A +A L+A KVL
Sbjct: 94 APDADLWAYKVLL 106
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic
amino acid biosynthesis, open form, form B, domain
movement, cyclase; HET: NAD; 2.20A {Staphylococcus
aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Length = 354
Score = 26.8 bits (60), Expect = 5.3
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 13/83 (15%)
Query: 73 RTLSDFGVPYEIKILPPHQNCK------EALSYALSAK-ERGIKIIIVGDGVEAHLSGVA 125
LS V I+P + K E L Y LS R II VG G +G
Sbjct: 52 DILSYENV--HKVIIPAGEKTKTFEQYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFV 109
Query: 126 AANSQ--ILVIRVP--LLSEDWS 144
AA + I+VP +L+ D S
Sbjct: 110 AATLLRGVHFIQVPTTILAHDSS 132
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes,
hydrolase, glycosidase, neopullu; 2.37A {Nostoc
punctiforme} PDB: 2wcs_A 2wkg_A
Length = 488
Score = 26.5 bits (59), Expect = 5.7
Identities = 7/15 (46%), Positives = 11/15 (73%), Gaps = 2/15 (13%)
Query: 103 AKERGIKIIIVGDGV 117
A +R IK+++ DGV
Sbjct: 112 AHQRNIKVVL--DGV 124
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like,
antiparallel beta-sheet, greek terminal domain,
extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Length = 424
Score = 26.6 bits (59), Expect = 6.5
Identities = 5/20 (25%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 103 AKERGIKIIIVGDGVEAHLS 122
AK++ I++I+ D +
Sbjct: 91 AKKKSIRVIL--DLTPNYRG 108
>2vac_A Twinfilin-2; transferase, actin binding, phosphorylation,
cofilin-like, cytoskeleton, actin-binding, protein
tyrosine kinase-9; 1.70A {Homo sapiens}
Length = 134
Score = 25.7 bits (56), Expect = 7.3
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 90 HQNCKEALSYALSAKERGIKIIIVGDG--VEAHLSGVAAANSQILVIRVPLLSEDW 143
+ KE + A + R IK++I + + A V + +PLL
Sbjct: 7 TEELKEFFAKARAGSVRLIKVVIEDEQLVLGASQEPVGRWDQDYDRAVLPLLDAQQ 62
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national
project on structural and functional analyses; HET: GLC;
2.30A {Thermus thermophilus}
Length = 475
Score = 26.1 bits (58), Expect = 7.7
Identities = 6/15 (40%), Positives = 10/15 (66%), Gaps = 2/15 (13%)
Query: 103 AKERGIKIIIVGDGV 117
A G+++I+ DGV
Sbjct: 106 AHAHGVRVIL--DGV 118
>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease,
intracellular proteinase regulat; HET: CSX 1PE; 1.56A
{Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A*
Length = 327
Score = 26.1 bits (58), Expect = 7.8
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 168 AKNAALYAVKVLG 180
A A L+ +K L
Sbjct: 107 APKADLFIIKALS 119
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP}
SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Length = 583
Score = 26.2 bits (58), Expect = 7.9
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 103 AKERGIKIIIVGDGVEAHLS 122
ERGI++++ D V H
Sbjct: 228 CHERGIRVLL--DAVFNHSG 245
>3afg_A Subtilisin-like serine protease; propeptide, thermococcus
kodakaraensis, hydrolas protease; 2.00A {Thermococcus
kodakarensis}
Length = 539
Score = 26.4 bits (58), Expect = 7.9
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 168 AKNAALYAVKVLG 180
A A L +KVL
Sbjct: 203 APGAKLVGIKVLN 215
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus
stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB:
1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Length = 588
Score = 26.2 bits (58), Expect = 8.4
Identities = 6/20 (30%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 103 AKERGIKIIIVGDGVEAHLS 122
E+GI++++ D V H
Sbjct: 232 CHEKGIRVML--DAVFNHCG 249
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase;
2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2
b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A*
1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A*
1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Length = 585
Score = 26.2 bits (58), Expect = 8.7
Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 103 AKERGIKIIIVGDGVEAHLS 122
A RGIKII+ D V H
Sbjct: 229 AHRRGIKIIL--DAVFNHAG 246
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 25.5 bits (56), Expect = 9.3
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 103 AKERGIKIIIVGDG 116
+ IK ++VGDG
Sbjct: 1 GSPQAIKCVVVGDG 14
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.384
Gapped
Lambda K H
0.267 0.0790 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,024,773
Number of extensions: 182999
Number of successful extensions: 795
Number of sequences better than 10.0: 1
Number of HSP's gapped: 779
Number of HSP's successfully gapped: 61
Length of query: 196
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 107
Effective length of database: 4,216,824
Effective search space: 451200168
Effective search space used: 451200168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.8 bits)