BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029273
(196 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
Length = 990
Score = 107 bits (267), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 100/181 (55%), Gaps = 9/181 (4%)
Query: 4 VAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHN 63
+AGL Y + +T G ++V GYN K ILL+ I +K+A F++ RF +IKE + +N
Sbjct: 584 LAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEKRFEIIKEAYMRSLNN 643
Query: 64 NKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGN 123
+ QP Q AMYY L++ + W E E L + L F+P +LSR +E + GN
Sbjct: 644 FRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIEALLHGN 703
Query: 124 IESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKL-EKG------KNYVYSNQG 176
I A I+Q +ED + ++ +PL PSQ + R V+L ++G +N V++N G
Sbjct: 704 ITKQAALGIMQMVEDTLIEHAH--TKPLLPSQLVRYREVQLPDRGWFVYQQRNEVHNNSG 761
Query: 177 L 177
+
Sbjct: 762 I 762
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
Length = 990
Score = 107 bits (267), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 100/181 (55%), Gaps = 9/181 (4%)
Query: 4 VAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHN 63
+AGL Y + +T G ++V GYN K ILL+ I +K+A F++ RF +IKE + +N
Sbjct: 584 LAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEKRFEIIKEAYMRSLNN 643
Query: 64 NKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGN 123
+ QP Q AMYY L++ + W E E L + L F+P +LSR +E + GN
Sbjct: 644 FRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIEALLHGN 703
Query: 124 IESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKL-EKG------KNYVYSNQG 176
I A I+Q +ED + ++ +PL PSQ + R V+L ++G +N V++N G
Sbjct: 704 ITKQAALGIMQMVEDTLIEHAH--TKPLLPSQLVRYREVQLPDRGWFVYQQRNEVHNNSG 761
Query: 177 L 177
+
Sbjct: 762 I 762
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
Length = 990
Score = 107 bits (267), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 100/181 (55%), Gaps = 9/181 (4%)
Query: 4 VAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHN 63
+AGL Y + +T G ++V GYN K ILL+ I +K+A F++ RF +IKE + +N
Sbjct: 584 LAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEKRFEIIKEAYMRSLNN 643
Query: 64 NKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGN 123
+ QP Q AMYY L++ + W E E L + L F+P +LSR +E + GN
Sbjct: 644 FRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIEALLHGN 703
Query: 124 IESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKL-EKG------KNYVYSNQG 176
I A I+Q +ED + ++ +PL PSQ + R V+L ++G +N V++N G
Sbjct: 704 ITKQAALGIMQMVEDTLIEHAH--TKPLLPSQLVRYREVQLPDRGWFVYQQRNEVHNNSG 761
Query: 177 L 177
+
Sbjct: 762 I 762
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
Length = 1019
Score = 107 bits (267), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 100/181 (55%), Gaps = 9/181 (4%)
Query: 4 VAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHN 63
+AGL Y + +T G ++V GYN K ILL+ I +K+A F++ RF +IKE + +N
Sbjct: 613 LAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEKRFEIIKEAYMRSLNN 672
Query: 64 NKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGN 123
+ QP Q AMYY L++ + W E E L + L F+P +LSR +E + GN
Sbjct: 673 FRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIEALLHGN 732
Query: 124 IESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKL-EKG------KNYVYSNQG 176
I A I+Q +ED + ++ +PL PSQ + R V+L ++G +N V++N G
Sbjct: 733 ITKQAALGIMQMVEDTLIEHAH--TKPLLPSQLVRYREVQLPDRGWFVYQQRNEVHNNSG 790
Query: 177 L 177
+
Sbjct: 791 I 791
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
Length = 969
Score = 107 bits (267), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 100/181 (55%), Gaps = 9/181 (4%)
Query: 4 VAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHN 63
+AGL Y + +T G ++V GYN K ILL+ I +K+A F++ RF +IKE + +N
Sbjct: 571 LAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEKRFEIIKEAYMRSLNN 630
Query: 64 NKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGN 123
+ QP Q AMYY L++ + W E E L + L F+P +LSR +E + GN
Sbjct: 631 FRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIEALLHGN 690
Query: 124 IESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKL-EKG------KNYVYSNQG 176
I A I+Q +ED + ++ +PL PSQ + R V+L ++G +N V++N G
Sbjct: 691 ITKQAALGIMQMVEDTLIEHAH--TKPLLPSQLVRYREVQLPDRGWFVYQQRNEVHNNSG 748
Query: 177 L 177
+
Sbjct: 749 I 749
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex
pdb|3CWW|B Chain B, Crystal Structure Of Ide-Bradykinin Complex
Length = 990
Score = 107 bits (267), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 99/181 (54%), Gaps = 9/181 (4%)
Query: 4 VAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHN 63
+AGL Y + +T G ++V GYN K ILL+ I +K+A F++ RF +IKE + +N
Sbjct: 584 LAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNN 643
Query: 64 NKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGN 123
+ QP Q AMYY L++ + W E E L + L F+P +LSR +E + GN
Sbjct: 644 FRAEQPHQHAMYYLRLLMTEVAWTKDELKEALADVTLPRLKAFIPQLLSRLHIEALLHGN 703
Query: 124 IESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKL-EKG------KNYVYSNQG 176
I A I+Q +ED + ++ +PL PSQ R V+L ++G +N V++N G
Sbjct: 704 ITKQAALGIMQMVEDTLIEHAH--TKPLLPSQLAAYREVQLPDRGWFVYQQRNEVHNNSG 761
Query: 177 L 177
+
Sbjct: 762 I 762
>pdb|2G47|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G47|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G48|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G48|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G49|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G49|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G54|A Chain A, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G54|B Chain B, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G56|A Chain A, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2G56|B Chain B, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2JBU|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|2JBU|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|3E50|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
pdb|3E50|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
Length = 990
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 93/172 (54%), Gaps = 2/172 (1%)
Query: 4 VAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHN 63
+AGL Y + +T G ++V GYN K ILL+ I +K+A F++ RF +IKE + +N
Sbjct: 584 LAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEKRFEIIKEAYMRSLNN 643
Query: 64 NKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGN 123
+ QP Q AMYY L++ + W E E L + L F+P +LSR +E + GN
Sbjct: 644 FRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIEALLHGN 703
Query: 124 IESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQ 175
I A I+Q +ED + ++ +PL PSQ + R V+L +VY +
Sbjct: 704 ITKQAALGIMQMVEDTLIEHAH--TKPLLPSQLVRYREVQLPDRGWFVYQQR 753
>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation
pdb|2JG4|B Chain B, Substrate-Free Ide Structure In Its Closed Conformation
Length = 990
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 93/172 (54%), Gaps = 2/172 (1%)
Query: 4 VAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHN 63
+AGL Y + +T G ++V GYN K ILL+ I +K+A F++ RF +IKE + +N
Sbjct: 584 LAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEKRFEIIKEAYMRSLNN 643
Query: 64 NKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGN 123
+ QP Q AMYY L++ + W E E L + L F+P +LSR +E + GN
Sbjct: 644 FRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIEALLHGN 703
Query: 124 IESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQ 175
I A I+Q +ED + ++ +PL PSQ + R V+L +VY +
Sbjct: 704 ITKQAALGIMQMVEDTLIEHAH--TKPLLPSQLVRYREVQLPDRGWFVYQQR 753
>pdb|3P7O|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) E111f Mutant With
Two Bound Peptides
Length = 1019
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 93/172 (54%), Gaps = 2/172 (1%)
Query: 4 VAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHN 63
+AGL Y + +T G ++V GYN K ILL+ I +K+A F++ RF +IKE + +N
Sbjct: 613 LAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKITEKMATFEIDKKRFEIIKEAYMRSLNN 672
Query: 64 NKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGN 123
+ QP Q AMYY L++ + W E E L + L F+P +LSR +E + GN
Sbjct: 673 FRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIEALLHGN 732
Query: 124 IESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQ 175
I A ++Q +ED + ++ +PL PSQ + R V+L +VY +
Sbjct: 733 ITKQAALGVMQMVEDTLIEHAH--TKPLLPSQLVRYREVQLPDRGWFVYQRR 782
>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp
Length = 1019
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 93/172 (54%), Gaps = 2/172 (1%)
Query: 4 VAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHN 63
+AGL Y + +T G ++V GYN K ILL+ I +K+A F++ RF +IKE + +N
Sbjct: 613 LAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKITEKMATFEIDKKRFEIIKEAYMRSLNN 672
Query: 64 NKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGN 123
+ QP Q AMYY L++ + W E E L + L F+P +LSR +E + GN
Sbjct: 673 FRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIEALLHGN 732
Query: 124 IESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQ 175
I A ++Q +ED + ++ +PL PSQ + R V+L +VY +
Sbjct: 733 ITKQAALGVMQMVEDTLIEHAH--TKPLLPSQLVRYREVQLPDRGWFVYQRR 782
>pdb|3P7L|A Chain A, Rat Insulin Degrading Enzyme (Insulysin)
Length = 978
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 93/172 (54%), Gaps = 2/172 (1%)
Query: 4 VAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHN 63
+AGL Y + +T G ++V GYN K ILL+ I +K+A F++ RF +IKE + +N
Sbjct: 572 LAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKITEKMATFEIDKKRFEIIKEAYMRSLNN 631
Query: 64 NKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGN 123
+ QP Q AMYY L++ + W E E L + L F+P +LSR +E + GN
Sbjct: 632 FRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIEALLHGN 691
Query: 124 IESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQ 175
I A ++Q +ED + ++ +PL PSQ + R V+L +VY +
Sbjct: 692 ITKQAALGVMQMVEDTLIEHAH--TKPLLPSQLVRYREVQLPDRGWFVYQRR 741
>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin
Length = 939
Score = 29.6 bits (65), Expect = 1.0, Method: Composition-based stats.
Identities = 29/178 (16%), Positives = 73/178 (41%), Gaps = 11/178 (6%)
Query: 4 VAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHN 63
V G+ + N +G V GY +L L + + + + D+ K + +
Sbjct: 566 VGGISFSTN-ANNGLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDS 624
Query: 64 NKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGN 123
+ + F+ A+ ++ Q + E ++LP + +++ + + S E + GN
Sbjct: 625 AEKGKAFEQAIMPAQMLSQVPYFSRDERRKILPSITLKEVLAYRDALKSGARPEFMVIGN 684
Query: 124 IESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSD 181
+ +A ++ + ++ + C+ N+ V ++K ++ ++ G N +D
Sbjct: 685 MTEAQATTLARDVQKQLGADGSEWCR---------NKDVVVDKKQSVIFEKAG-NSTD 732
>pdb|2H3N|A Chain A, Crystal Structure Of A Surrogate Light Chain (Lambda5
And Vpreb) Homodimer
pdb|2H3N|C Chain C, Crystal Structure Of A Surrogate Light Chain (Lambda5
And Vpreb) Homodimer
Length = 100
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 26 NHKLRILLETIFQK-IAQFKVKPDRFSVIKEMV-TKEYHNNKFLQPFQLAMYYCSL 79
H R LL Q +Q P RFS K++ + Y + LQP AMYYC++
Sbjct: 43 GHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYCAM 98
>pdb|2H32|A Chain A, Crystal Structure Of The Pre-B Cell Receptor
Length = 126
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 26 NHKLRILLETIFQK-IAQFKVKPDRFSVIKEMV-TKEYHNNKFLQPFQLAMYYCSL 79
H R LL Q +Q P RFS K++ + Y + LQP AMYYC++
Sbjct: 43 GHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYCAM 98
>pdb|3BJ9|1 Chain 1, Crystal Structure Of The Surrogate Light Chain Variable
Domain Vprebj
Length = 116
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 26 NHKLRILLETIFQK-IAQFKVKPDRFSVIKEMV-TKEYHNNKFLQPFQLAMYYCSL 79
H R LL Q +Q P RFS K++ + Y + LQP AMYYC++
Sbjct: 41 GHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYCAM 96
>pdb|3VA7|A Chain A, Crystal Structure Of The Kluyveromyces Lactis Urea
Carboxylase
Length = 1236
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 15/129 (11%)
Query: 71 QLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMM--LSRTFLECYIAGNIESNE 128
L + C ++ + EL + L D +FVP+ ++R E +I++ E
Sbjct: 752 SLGGFVCQAVVAEA------ELWKVGQLTPGDTIQFVPLSYGVARQLKESQDK-SIDNFE 804
Query: 129 AGSIIQYIED-VFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDENSC-- 185
GS+++ +D + K NPI L L+ +V + G Y+ G D N C
Sbjct: 805 EGSLLELSDDKILPKYENPILAVLPKKSDLSPKVTYRQAGDRYILVEYGELEFDLNICYR 864
Query: 186 ---LVHYIQ 191
L+H ++
Sbjct: 865 INRLIHQVE 873
>pdb|4AHC|A Chain A, Crystal Structure Of An Evolved Replicating Dna Polymerase
pdb|4AHC|B Chain B, Crystal Structure Of An Evolved Replicating Dna Polymerase
pdb|4AIL|C Chain C, Crystal Structure Of An Evolved Replicating Dna Polymerase
Length = 775
Score = 27.3 bits (59), Expect = 4.8, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 29 LRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQP 69
+RI+ E I QK+A +++ P++ + I E +T+ H K + P
Sbjct: 641 VRIVKEVI-QKLANYEIPPEKLA-IYEQITRPLHEYKAIGP 679
>pdb|3A2F|A Chain A, Crystal Structure Of Pyrococcus Furiosus Dna
PolymerasePCNA Monomer Mutant Complex
Length = 775
Score = 27.3 bits (59), Expect = 4.8, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 29 LRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQP 69
+RI+ E I QK+A +++ P++ + I E +T+ H K + P
Sbjct: 641 VRIVKEVI-QKLANYEIPPEKLA-IYEQITRPLHEYKAIGP 679
>pdb|2JGU|A Chain A, Crystal Structure Of Dna-directed Dna Polymerase
Length = 775
Score = 27.3 bits (59), Expect = 5.3, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 29 LRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQP 69
+RI+ E I QK+A +++ P++ + I E +T+ H K + P
Sbjct: 641 VRIVKEVI-QKLANYEIPPEKLA-IYEQITRPLHEYKAIGP 679
>pdb|2A3L|A Chain A, X-Ray Structure Of Adenosine 5'-Monophosphate Deaminase
From Arabidopsis Thaliana In Complex With Coformycin
5'-Phosphate
Length = 701
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 13/126 (10%)
Query: 18 FEVTVVGYNH-KLRILLETIFQ-KIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMY 75
FE TV +H +L + L+ + + + KP+R K M T N F F +Y
Sbjct: 437 FEATVDPDSHPQLHVFLKQVVGFDLVDDESKPERRPT-KHMPTPAQWTNAFNPAFSYYVY 495
Query: 76 YCSLIL----QDQTWPWMEELEVLPHL-EAEDLAKFVPMMLSRTFLECYIAGNIESNEAG 130
YC L + + M + + PH EA D+ L+ TFL C+ + +
Sbjct: 496 YCYANLYVLNKLRESKGMTTITLRPHSGEAGDIDH-----LAATFLTCHSIAHGINLRKS 550
Query: 131 SIIQYI 136
++QY+
Sbjct: 551 PVLQYL 556
>pdb|2VRQ|A Chain A, Structure Of An Inactive Mutant Of Arabinofuranosidase
From Thermobacillus Xylanilyticus In Complex With A
Pentasaccharide
pdb|2VRQ|B Chain B, Structure Of An Inactive Mutant Of Arabinofuranosidase
From Thermobacillus Xylanilyticus In Complex With A
Pentasaccharide
pdb|2VRQ|C Chain C, Structure Of An Inactive Mutant Of Arabinofuranosidase
From Thermobacillus Xylanilyticus In Complex With A
Pentasaccharide
Length = 496
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 117 ECYIAGNIESNEAGSIIQYIEDVFFKGSNPIC 148
E YI+GN+ S + +++E + F G +P+
Sbjct: 123 EPYISGNVGSGTVQEMSEWVEYITFDGESPMA 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,989,900
Number of Sequences: 62578
Number of extensions: 235718
Number of successful extensions: 573
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 560
Number of HSP's gapped (non-prelim): 21
length of query: 196
length of database: 14,973,337
effective HSP length: 94
effective length of query: 102
effective length of database: 9,091,005
effective search space: 927282510
effective search space used: 927282510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)