Query 029273
Match_columns 196
No_of_seqs 171 out of 1063
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 10:15:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029273.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029273hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0959 N-arginine dibasic con 100.0 1.8E-33 4E-38 248.6 19.4 192 1-194 572-763 (974)
2 COG1025 Ptr Secreted/periplasm 99.9 3.1E-26 6.6E-31 200.5 17.5 184 1-193 565-748 (937)
3 PRK15101 protease3; Provisiona 99.9 6.9E-23 1.5E-27 187.6 20.8 182 1-194 586-767 (961)
4 COG0612 PqqL Predicted Zn-depe 99.5 2E-13 4.4E-18 115.5 12.7 136 6-142 87-225 (438)
5 TIGR02110 PQQ_syn_pqqF coenzym 99.5 4.4E-12 9.5E-17 111.8 18.9 137 5-142 70-212 (696)
6 PRK15101 protease3; Provisiona 99.3 7.5E-11 1.6E-15 108.7 13.3 138 5-143 114-258 (961)
7 PTZ00432 falcilysin; Provision 98.9 3.2E-08 6.9E-13 92.3 15.5 132 9-141 165-330 (1119)
8 KOG0960 Mitochondrial processi 98.8 4.7E-08 1E-12 79.5 11.1 135 6-141 103-240 (467)
9 PF00675 Peptidase_M16: Insuli 98.4 2.2E-06 4.8E-11 61.9 9.1 82 5-87 60-142 (149)
10 PF05193 Peptidase_M16_C: Pept 98.2 3.3E-06 7.1E-11 62.1 4.9 47 97-143 1-47 (184)
11 KOG2067 Mitochondrial processi 98.0 2.6E-05 5.6E-10 64.0 7.8 135 6-142 94-231 (472)
12 COG1026 Predicted Zn-dependent 97.9 0.00015 3.2E-09 65.8 11.5 108 28-136 112-236 (978)
13 COG1025 Ptr Secreted/periplasm 97.6 0.0013 2.9E-08 59.6 12.9 136 8-144 97-239 (937)
14 KOG2067 Mitochondrial processi 97.3 0.0022 4.7E-08 53.0 9.3 119 9-129 327-449 (472)
15 KOG2583 Ubiquinol cytochrome c 97.3 0.0066 1.4E-07 50.1 12.0 128 5-136 91-221 (429)
16 COG0612 PqqL Predicted Zn-depe 97.3 0.0041 8.8E-08 52.9 11.4 120 5-125 300-432 (438)
17 KOG0961 Predicted Zn2+-depende 97.3 0.003 6.5E-08 55.6 9.9 125 17-143 100-238 (1022)
18 KOG0959 N-arginine dibasic con 97.3 0.0044 9.4E-08 57.0 11.5 133 10-143 103-243 (974)
19 KOG0960 Mitochondrial processi 96.0 0.06 1.3E-06 44.7 8.5 117 8-125 329-450 (467)
20 PTZ00432 falcilysin; Provision 95.5 0.094 2E-06 49.9 9.2 124 17-140 756-897 (1119)
21 COG1026 Predicted Zn-dependent 95.1 0.19 4E-06 46.5 9.5 111 17-127 618-745 (978)
22 KOG2019 Metalloendoprotease HM 94.7 0.15 3.3E-06 45.4 7.5 68 67-134 200-270 (998)
23 PF08367 M16C_assoc: Peptidase 91.9 0.81 1.8E-05 35.9 7.0 57 17-73 161-218 (248)
24 KOG2583 Ubiquinol cytochrome c 86.0 11 0.00024 31.8 9.6 106 13-125 312-421 (429)
25 KOG0961 Predicted Zn2+-depende 82.8 4 8.6E-05 36.9 6.1 109 18-127 636-759 (1022)
26 PF09851 SHOCT: Short C-termin 68.3 13 0.00028 19.1 3.4 26 33-58 5-30 (31)
27 PF01729 QRPTase_C: Quinolinat 66.5 9 0.00019 28.3 3.6 42 95-136 106-148 (169)
28 KOG2019 Metalloendoprotease HM 60.6 1.3E+02 0.0029 27.7 10.1 122 20-141 652-792 (998)
29 PRK05986 cob(I)alamin adenolsy 58.0 23 0.0005 26.8 4.5 67 72-140 102-173 (191)
30 PRK08385 nicotinate-nucleotide 58.0 25 0.00054 28.2 4.9 41 95-135 208-251 (278)
31 PF12674 Zn_ribbon_2: Putative 55.1 27 0.00058 22.4 3.9 38 96-140 40-77 (81)
32 KOG3460 Small nuclear ribonucl 54.3 6.3 0.00014 25.2 0.8 46 18-63 28-73 (91)
33 PF07521 RMMBL: RNA-metabolisi 53.7 13 0.00029 20.5 2.0 25 97-123 17-41 (43)
34 PRK06978 nicotinate-nucleotide 53.2 29 0.00064 28.1 4.6 39 95-135 231-269 (294)
35 PRK09016 quinolinate phosphori 52.7 30 0.00066 28.1 4.6 39 95-135 234-272 (296)
36 PF10925 DUF2680: Protein of u 51.7 17 0.00036 21.9 2.3 41 101-141 7-50 (59)
37 PRK05848 nicotinate-nucleotide 51.7 33 0.00072 27.5 4.7 41 95-135 208-249 (273)
38 PRK06559 nicotinate-nucleotide 50.9 35 0.00076 27.6 4.7 39 95-135 223-261 (290)
39 TIGR01669 phage_XkdX phage unc 50.7 13 0.00028 21.0 1.6 34 99-132 5-40 (45)
40 COG0157 NadC Nicotinate-nucleo 50.6 32 0.0007 27.6 4.4 41 95-135 214-254 (280)
41 TIGR03853 matur_matur probable 50.1 51 0.0011 21.0 4.4 22 73-94 4-26 (77)
42 PF00531 Death: Death domain; 49.1 46 0.001 20.6 4.4 42 69-110 39-82 (83)
43 PRK07896 nicotinate-nucleotide 47.2 42 0.00092 27.1 4.7 41 95-135 225-266 (289)
44 PF11116 DUF2624: Protein of u 46.8 34 0.00074 22.2 3.3 36 93-138 10-45 (85)
45 PRK14425 acylphosphatase; Prov 46.3 31 0.00067 22.7 3.2 36 2-37 29-65 (94)
46 PRK14429 acylphosphatase; Prov 46.0 36 0.00077 22.2 3.5 37 2-38 25-62 (90)
47 PRK14431 acylphosphatase; Prov 46.0 39 0.00085 22.0 3.6 37 2-38 25-61 (89)
48 PRK06543 nicotinate-nucleotide 44.7 47 0.001 26.8 4.6 39 95-135 219-257 (281)
49 COG1054 Predicted sulfurtransf 44.7 41 0.00089 27.3 4.2 130 5-135 33-194 (308)
50 PRK14420 acylphosphatase; Prov 44.7 40 0.00087 21.9 3.6 38 2-39 25-63 (91)
51 TIGR01334 modD putative molybd 44.5 52 0.0011 26.5 4.8 41 95-135 214-255 (277)
52 PRK14440 acylphosphatase; Prov 44.2 37 0.0008 22.2 3.3 36 2-37 26-62 (90)
53 PRK14430 acylphosphatase; Prov 43.7 36 0.00078 22.3 3.2 35 2-36 27-62 (92)
54 PF07350 DUF1479: Protein of u 42.8 31 0.00068 29.4 3.4 94 47-143 4-102 (416)
55 PRK14445 acylphosphatase; Prov 42.6 47 0.001 21.7 3.6 36 2-37 27-63 (91)
56 PF10678 DUF2492: Protein of u 42.4 84 0.0018 20.1 4.5 23 72-94 5-28 (78)
57 PF04472 DUF552: Protein of un 41.7 85 0.0018 19.4 4.8 44 97-141 6-49 (73)
58 PF10309 DUF2414: Protein of u 41.7 34 0.00075 20.8 2.6 27 93-119 11-40 (62)
59 PRK06106 nicotinate-nucleotide 41.6 55 0.0012 26.4 4.5 39 95-135 220-258 (281)
60 PRK06096 molybdenum transport 41.0 61 0.0013 26.2 4.7 40 96-135 216-256 (284)
61 PRK14446 acylphosphatase; Prov 38.9 67 0.0015 20.9 3.9 36 2-37 25-61 (88)
62 PRK07428 nicotinate-nucleotide 38.7 73 0.0016 25.8 4.8 41 95-135 222-263 (288)
63 PRK14424 acylphosphatase; Prov 38.0 51 0.0011 21.8 3.3 36 2-37 30-66 (94)
64 PRK14436 acylphosphatase; Prov 37.8 53 0.0012 21.5 3.3 36 2-37 27-63 (91)
65 PRK14435 acylphosphatase; Prov 37.7 51 0.0011 21.5 3.2 36 2-37 25-61 (90)
66 PRK14447 acylphosphatase; Prov 37.5 62 0.0013 21.3 3.6 36 2-37 27-64 (95)
67 PRK14444 acylphosphatase; Prov 37.5 52 0.0011 21.5 3.3 36 2-37 27-63 (92)
68 COG0588 GpmA Phosphoglycerate 37.4 44 0.00094 25.9 3.2 58 99-175 155-217 (230)
69 PRK14449 acylphosphatase; Prov 37.3 59 0.0013 21.2 3.5 38 2-39 26-64 (90)
70 KOG0088 GTPase Rab21, small G 37.1 71 0.0015 23.6 4.1 41 96-136 97-148 (218)
71 TIGR00708 cobA cob(I)alamin ad 37.1 74 0.0016 23.6 4.3 67 72-140 84-155 (173)
72 PRK14451 acylphosphatase; Prov 36.6 54 0.0012 21.3 3.2 36 2-37 26-62 (89)
73 PRK14427 acylphosphatase; Prov 36.5 64 0.0014 21.2 3.6 37 2-38 29-66 (94)
74 PRK14428 acylphosphatase; Prov 35.7 59 0.0013 21.6 3.3 36 2-37 31-67 (97)
75 PRK14448 acylphosphatase; Prov 35.4 57 0.0012 21.2 3.2 36 2-37 25-61 (90)
76 PRK14422 acylphosphatase; Prov 34.9 69 0.0015 21.0 3.5 37 2-38 29-66 (93)
77 PF09432 THP2: Tho complex sub 34.8 1.6E+02 0.0035 20.7 5.8 98 19-138 28-125 (132)
78 PHA00490 terminal protein 34.0 2.2E+02 0.0047 21.9 6.4 56 84-140 196-251 (266)
79 PRK05742 nicotinate-nucleotide 33.9 84 0.0018 25.2 4.5 39 95-135 215-253 (277)
80 PF00708 Acylphosphatase: Acyl 33.4 66 0.0014 20.8 3.3 35 4-38 29-64 (91)
81 PRK07414 cob(I)yrinic acid a,c 33.4 95 0.0021 23.2 4.4 65 72-138 102-171 (178)
82 PRK14441 acylphosphatase; Prov 33.4 81 0.0018 20.7 3.7 36 2-37 28-64 (93)
83 PRK14443 acylphosphatase; Prov 33.0 71 0.0015 21.0 3.3 37 2-38 27-64 (93)
84 PRK14452 acylphosphatase; Prov 33.0 64 0.0014 21.9 3.2 35 2-36 43-78 (107)
85 PRK14442 acylphosphatase; Prov 32.9 73 0.0016 20.8 3.4 36 2-37 27-63 (91)
86 PF10193 Telomere_reg-2: Telom 32.5 35 0.00077 23.3 1.9 66 29-98 43-110 (114)
87 PRK14438 acylphosphatase; Prov 32.5 71 0.0015 20.8 3.3 36 2-37 26-62 (91)
88 PRK14423 acylphosphatase; Prov 32.5 73 0.0016 20.8 3.3 36 2-37 28-64 (92)
89 PF06974 DUF1298: Protein of u 31.8 37 0.00081 24.4 2.0 54 4-63 97-152 (153)
90 cd08317 Death_ank Death domain 30.3 97 0.0021 19.7 3.6 40 67-106 41-82 (84)
91 COG2442 Uncharacterized conser 29.8 80 0.0017 20.2 3.0 27 84-110 42-68 (79)
92 PF10978 DUF2785: Protein of u 29.4 2.3E+02 0.0051 20.8 8.6 78 16-95 59-140 (175)
93 PRK14421 acylphosphatase; Prov 29.2 82 0.0018 21.0 3.2 36 2-37 27-63 (99)
94 PRK14450 acylphosphatase; Prov 29.1 88 0.0019 20.3 3.3 36 2-37 25-62 (91)
95 PRK14426 acylphosphatase; Prov 28.7 88 0.0019 20.4 3.2 36 3-38 28-64 (92)
96 PF00017 SH2: SH2 domain; Int 28.4 36 0.00077 20.9 1.3 16 120-135 2-17 (77)
97 cd01572 QPRTase Quinolinate ph 28.2 1.1E+02 0.0024 24.3 4.3 37 96-134 209-245 (268)
98 PF10369 ALS_ss_C: Small subun 28.2 70 0.0015 20.0 2.6 26 11-36 31-56 (75)
99 PF09568 RE_MjaI: MjaI restric 27.7 49 0.0011 24.5 2.0 31 88-118 60-90 (170)
100 smart00311 PWI PWI, domain in 27.4 1.6E+02 0.0035 18.3 5.4 62 50-114 6-68 (74)
101 PF03220 Tombus_P19: Tombusvir 26.6 1.9E+02 0.004 20.7 4.6 32 5-38 108-139 (170)
102 PF02099 Josephin: Josephin; 26.5 45 0.00097 24.3 1.7 62 73-134 8-75 (157)
103 PRK14432 acylphosphatase; Prov 26.4 1.1E+02 0.0025 20.0 3.5 37 2-38 25-63 (93)
104 cd01568 QPRTase_NadC Quinolina 26.4 1.4E+02 0.003 23.8 4.6 39 96-134 208-246 (269)
105 cd08803 Death_ank3 Death domai 26.3 1.1E+02 0.0024 19.6 3.3 40 67-106 41-82 (84)
106 PRK14433 acylphosphatase; Prov 26.0 1.1E+02 0.0024 19.8 3.3 36 2-37 24-60 (87)
107 PF14659 Phage_int_SAM_3: Phag 25.3 48 0.0011 18.8 1.4 19 93-111 40-58 (58)
108 PF08494 DEAD_assoc: DEAD/H as 25.2 1.7E+02 0.0037 21.8 4.6 22 4-25 46-67 (187)
109 COG3411 Ferredoxin [Energy pro 24.5 1.1E+02 0.0023 18.8 2.7 20 117-136 25-44 (64)
110 PRK14437 acylphosphatase; Prov 24.4 1.1E+02 0.0024 20.8 3.2 36 2-37 46-82 (109)
111 PF11693 DUF2990: Protein of u 24.1 79 0.0017 19.2 2.1 23 21-43 17-39 (64)
112 cd01573 modD_like ModD; Quinol 24.1 1.7E+02 0.0037 23.4 4.6 40 96-135 210-250 (272)
113 TIGR00078 nadC nicotinate-nucl 23.6 1.6E+02 0.0035 23.4 4.5 38 96-135 205-242 (265)
114 cd08305 Pyrin Pyrin: a protein 23.4 1.5E+02 0.0033 18.4 3.4 60 45-105 8-70 (73)
115 PF01136 Peptidase_U32: Peptid 23.0 82 0.0018 24.1 2.6 28 97-125 69-96 (233)
116 PF04255 DUF433: Protein of un 23.0 85 0.0018 18.3 2.1 24 83-106 29-52 (56)
117 PF14178 YppF: YppF-like prote 22.9 1.9E+02 0.004 17.5 4.2 36 96-139 17-52 (60)
118 COG1125 OpuBA ABC-type proline 22.6 1E+02 0.0022 24.9 3.0 47 88-136 159-206 (309)
119 KOG4107 MP1 adaptor interactin 22.6 1.7E+02 0.0038 19.7 3.7 39 2-40 14-52 (125)
120 PRK14434 acylphosphatase; Prov 22.5 1.6E+02 0.0034 19.3 3.5 35 4-38 27-64 (92)
121 PRK04387 hypothetical protein; 22.5 1.4E+02 0.003 19.7 3.1 29 84-112 9-48 (90)
122 cd00173 SH2 Src homology 2 dom 22.2 63 0.0014 20.5 1.6 16 120-135 3-18 (94)
123 PLN02716 nicotinate-nucleotide 21.9 1.9E+02 0.0041 23.7 4.5 35 99-135 248-282 (308)
124 PF10231 DUF2315: Uncharacteri 21.6 2.1E+02 0.0045 20.1 4.2 19 95-113 74-92 (126)
125 cd00561 CobA_CobO_BtuR ATP:cor 21.1 2.1E+02 0.0046 20.9 4.3 64 73-138 83-151 (159)
126 PRK14439 acylphosphatase; Prov 21.0 1.4E+02 0.0031 21.9 3.3 37 2-38 98-135 (163)
127 PRK14135 recX recombination re 20.9 4E+02 0.0086 20.8 6.2 50 48-98 210-259 (263)
128 COG3462 Predicted membrane pro 20.8 1.3E+02 0.0028 20.5 2.8 28 31-58 89-116 (117)
129 PF06576 DUF1133: Protein of u 20.7 3.6E+02 0.0079 20.0 5.6 69 72-142 41-114 (176)
130 PF14162 YozD: YozD-like prote 20.7 1.3E+02 0.0028 17.6 2.4 36 69-104 10-45 (57)
131 PF05435 Phi-29_GP3: Phi-29 DN 20.7 3.5E+02 0.0076 20.8 5.4 56 84-140 196-251 (266)
132 PF08671 SinI: Anti-repressor 20.6 90 0.002 15.9 1.6 14 96-109 15-28 (30)
No 1
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-33 Score=248.62 Aligned_cols=192 Identities=38% Similarity=0.676 Sum_probs=182.3
Q ss_pred CCceecceEEEeecCceeEEEEccccchHHHHHHHHHHHhccCCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHh
Q 029273 1 MNMVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLI 80 (196)
Q Consensus 1 ~A~~Agl~~~~~~~~~g~~i~v~G~s~kl~~~l~~v~~~l~~~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~l 80 (196)
+|..||++|+++.+..|+.++|+||++|++.+++.+++.+.++.+++++|+.+|+.+.++++|....+|+.+|.+++..+
T Consensus 572 ~A~~aGl~~~~~~s~~G~~~~v~Gfnekl~~ll~~~~~~~~~f~~~~~rf~iike~~~~~~~n~~~~~p~~~a~~~~~ll 651 (974)
T KOG0959|consen 572 PALLAGLTYSLSSSSKGVELRVSGFNEKLPLLLEKVVQMMANFELDEDRFEIIKELLKRELRNHAFDNPYQLANDYLLLL 651 (974)
T ss_pred HHHhccceEEeeecCCceEEEEeccCcccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999987899999999999999
Q ss_pred hcCCCCChhHHHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHhccCCCCCccCCCCCCCCccc
Q 029273 81 LQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNR 160 (196)
Q Consensus 81 l~~~~~~~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 160 (196)
+.+..|+.++++++++.+|++|+..|...++++.+++++|+||++.++|.++++.+.+.+ ....|.++|+.++++...+
T Consensus 652 l~~~~W~~~e~~~al~~~~le~~~~F~~~~~~~~~~e~~i~GN~te~~A~~l~~~v~d~l-~~~~~~~~p~~~~~~~~~~ 730 (974)
T KOG0959|consen 652 LEESIWSKEELLEALDDVTLEDLESFISEFLQPFHLELLIHGNLTEKEALQLLKSVLDIL-KSAAPNSRPLFRSEHLPRR 730 (974)
T ss_pred hhccccchHHHHHHhhcccHHHHHHHHHHHhhhhheEEEEecCcchHHHHHHHHHHHhhh-hccCCCCccccccccCccc
Confidence 999999999999999999999999999999999999999999999999999999999999 4456788899888898899
Q ss_pred eEEeCCCceEEEecCCCCCCCCCeEEEEEEEcCC
Q 029273 161 VVKLEKGKNYVYSNQGLNPSDENSCLVHYIQVQE 194 (196)
Q Consensus 161 ~~~l~~g~~~~~~~~~~~~~~~ns~i~~y~Q~g~ 194 (196)
.++||.|.+++|+.. .|++|+|||+++|||+|.
T Consensus 731 ~~~lp~G~~~~~~~~-~n~~~~ns~i~~~~Q~~~ 763 (974)
T KOG0959|consen 731 EIQLPNGDYYFYRHL-LNKTDDNSCIEVYYQIGV 763 (974)
T ss_pred ceeccCCceEEEEcc-cccCCCCceEEEEEEccc
Confidence 999999999887766 789999999999999874
No 2
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.1e-26 Score=200.53 Aligned_cols=184 Identities=22% Similarity=0.363 Sum_probs=166.6
Q ss_pred CCceecceEEEeecCceeEEEEccccchHHHHHHHHHHHhccCCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHh
Q 029273 1 MNMVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLI 80 (196)
Q Consensus 1 ~A~~Agl~~~~~~~~~g~~i~v~G~s~kl~~~l~~v~~~l~~~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~l 80 (196)
+|.+||+++++.++.+|+.|+++||+++++.++..+++.+.+..+++++|+.+|+++.+.|+|.....|+.++.+.+..+
T Consensus 565 ~A~~aG~sfs~~~~~~Gl~ltisGft~~lp~L~~~~l~~l~~~~~~~~~f~~~K~~~~~~~~~a~~~~p~~~~~~~l~~l 644 (937)
T COG1025 565 QASLAGLSFSLAANSNGLDLTISGFTQRLPQLLRAFLDGLFSLPVDEDRFEQAKSQLSEELKNALTGKPYRQALDGLTGL 644 (937)
T ss_pred HHHhcceEEEeecCCCceEEEeeccccchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHhhhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCChhHHHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHhccCCCCCccCCCCCCCCccc
Q 029273 81 LQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNR 160 (196)
Q Consensus 81 l~~~~~~~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 160 (196)
+.++.|+.+|++++|++++++++.+|...++++.+++.+|+||++.++|.++.+.+...+....... ...+
T Consensus 645 ~~~~~~s~~e~~~~l~~v~~~e~~~f~~~l~~~~~lE~lv~Gn~~~~da~~l~~~~~~~l~~~~s~~---------~~~~ 715 (937)
T COG1025 645 LQVPYWSREERRNALESVSVEEFAAFRDTLLNGVHLEMLVLGNLTEADATNLAETLQKKLPAIGSTW---------YRNP 715 (937)
T ss_pred hCCCCcCHHHHHHHhhhccHHHHHHHHHHhhhccceeeeeeccchHHHHHHHHHHHHhhhcccCCcc---------cCCC
Confidence 9999999999999999999999999999999999999999999999999999999888875442211 1235
Q ss_pred eEEeCCCceEEEecCCCCCCCCCeEEEEEEEcC
Q 029273 161 VVKLEKGKNYVYSNQGLNPSDENSCLVHYIQVQ 193 (196)
Q Consensus 161 ~~~l~~g~~~~~~~~~~~~~~~ns~i~~y~Q~g 193 (196)
.+.+++|.+..++....++++.|+|+.+--|.+
T Consensus 716 ~~~~~~~~~~~~e~~~~~~~~an~~i~~~~~~~ 748 (937)
T COG1025 716 SVYLLKGGTRIFETVGGESDSANAAILYPQQYD 748 (937)
T ss_pred ceeccCCCeeEeeeccCCcccccceeEeccccc
Confidence 677788888898888888888888887765654
No 3
>PRK15101 protease3; Provisional
Probab=99.91 E-value=6.9e-23 Score=187.56 Aligned_cols=182 Identities=15% Similarity=0.279 Sum_probs=152.1
Q ss_pred CCceecceEEEeecCceeEEEEccccchHHHHHHHHHHHhccCCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHh
Q 029273 1 MNMVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLI 80 (196)
Q Consensus 1 ~A~~Agl~~~~~~~~~g~~i~v~G~s~kl~~~l~~v~~~l~~~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~l 80 (196)
.|.+||++++++ +.+|+.++++||++|++.+++.+++.+.++.+++++|+++|+.++++++|.....|+.++...+..+
T Consensus 586 ~a~~aG~~~~~~-~~~g~~i~v~g~s~~l~~ll~~l~d~l~~~~~~~~~fe~~k~~~~~~l~~~~~~~~~~~~~~~~~~~ 664 (961)
T PRK15101 586 QASVGGISFSTN-ANNGLMVNANGYTQRLPQLLQALLEGYFSFTPTEEQLAQAKSWYREQLDSAEKGKAYEQAIMPAQML 664 (961)
T ss_pred hHHhcCcEEEEc-cCCCEEEEEEecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcccCcHHHHHHHHHHH
Confidence 378899999999 7999999999999999999999999999999999999999999999999987778999998877666
Q ss_pred hcCCCCChhHHHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHhccCCCCCccCCCCCCCCccc
Q 029273 81 LQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNR 160 (196)
Q Consensus 81 l~~~~~~~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 160 (196)
...++|++.+..++|+++|++|+++|+++++.+.+++++|+||+++++|+.+++.+.+.+..... + ....+
T Consensus 665 ~~~py~~~~~~~~~l~~it~edl~~f~~~~~~~~~~~~~v~GNi~~~ea~~l~~~~~~~l~~~~~----~-----~~~~~ 735 (961)
T PRK15101 665 SQVPYFERDERRKLLPSITLKDVLAYRDALLSGATPEFLVVGNLTEEQVTTLARDVQKQLGADGT----E-----WWRGK 735 (961)
T ss_pred hcCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhceEEEEEEcCCCHHHHHHHHHHHHHHhccCCc----c-----ccccc
Confidence 66666777889999999999999999999999999999999999999999999999888854211 0 01123
Q ss_pred eEEeCCCceEEEecCCCCCCCCCeEEEEEEEcCC
Q 029273 161 VVKLEKGKNYVYSNQGLNPSDENSCLVHYIQVQE 194 (196)
Q Consensus 161 ~~~l~~g~~~~~~~~~~~~~~~ns~i~~y~Q~g~ 194 (196)
.+.++++....+... . ..++|+++..|+|+|.
T Consensus 736 ~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~g~ 767 (961)
T PRK15101 736 DVVVDKKQSVNFEKA-G-SSTDSALAAVYVPTGY 767 (961)
T ss_pred ceEeCCCCeEEEecC-C-CCCCCeEEEEEEeCCC
Confidence 355665555555432 2 3455888888999884
No 4
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=99.52 E-value=2e-13 Score=115.50 Aligned_cols=136 Identities=13% Similarity=0.077 Sum_probs=118.7
Q ss_pred cceEEEeecCceeEEEEccccchHHHHHHHHHHHhccCCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhcC-C
Q 029273 6 GLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD-Q 84 (196)
Q Consensus 6 gl~~~~~~~~~g~~i~v~G~s~kl~~~l~~v~~~l~~~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~-~ 84 (196)
|...+...+.+.....++..+++++..++.+.+.+.++.|+++.|++.|..++.+++.. .++|...+...+...+++ +
T Consensus 87 G~~~na~ts~d~t~y~~~~l~~~~~~~l~llad~l~~p~f~~~~~e~Ek~vil~ei~~~-~d~p~~~~~~~l~~~~~~~~ 165 (438)
T COG0612 87 GGQLNAFTSFDYTVYYLSVLPDNLDKALDLLADILLNPTFDEEEVEREKGVILEEIRMR-QDDPDDLAFERLLEALYGNH 165 (438)
T ss_pred cCeeeccccchhhhhhhhhchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh-ccCchHHHHHHHHHHhhccC
Confidence 44455554445555555567899999999999999999999999999999999999998 578999999999999986 4
Q ss_pred CC--ChhHHHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHhcc
Q 029273 85 TW--PWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFK 142 (196)
Q Consensus 85 ~~--~~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~ 142 (196)
++ ++.+..+.++++|.+||++|+++|+.+.++.++|+||++.+++..+++.....|+.
T Consensus 166 p~~~~~~G~~e~I~~it~~dl~~f~~k~Y~p~n~~l~vvGdi~~~~v~~~~~~~f~~~~~ 225 (438)
T COG0612 166 PLGRPILGTEESIEAITREDLKDFYQKWYQPDNMVLVVVGDVDAEEVVELIEKYFGDLPG 225 (438)
T ss_pred CCCCCCCCCHHHHHhCCHHHHHHHHHHhcCcCceEEEEecCCCHHHHHHHHHHHHccCCc
Confidence 54 44567899999999999999999999999999999999999999999999998875
No 5
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.48 E-value=4.4e-12 Score=111.84 Aligned_cols=137 Identities=12% Similarity=0.003 Sum_probs=119.2
Q ss_pred ecceEEEeecCceeEEEEccccchHHHHHHHHHHHhccCCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhcC-
Q 029273 5 AGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD- 83 (196)
Q Consensus 5 Agl~~~~~~~~~g~~i~v~G~s~kl~~~l~~v~~~l~~~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~- 83 (196)
-|.+++.+.+.+...+.++..+++++..++.+.+.+.+|.+++++|++.|+.++.+++.. .++|..++.+.+...+++
T Consensus 70 lGG~lNA~Ts~d~T~y~~~v~~~~l~~aL~lLaD~l~~P~f~eeeierEr~vvl~Ei~~~-~ddp~~~~~~~l~~~l~~~ 148 (696)
T TIGR02110 70 QGGQVNATTLERTTAFFFELPAAALAAGLARLCDMLARPLLTAEDQQREREVLEAEYIAW-QNDADTLREAALLDALQAG 148 (696)
T ss_pred hCCeEEEEEcCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHcCCC
Confidence 477889998899999999999999999999999999999999999999999999999987 589999999999888884
Q ss_pred CCCC-----hhHHHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHhcc
Q 029273 84 QTWP-----WMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFK 142 (196)
Q Consensus 84 ~~~~-----~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~ 142 (196)
++|. ..+.++.+..++.+|+++|+++++.+.++.+.|+||++.++++++++...+.+..
T Consensus 149 HPy~~~~iGt~esL~~it~~t~edL~~F~~~~Y~p~NmvLvIvGdvs~eel~~l~e~~f~~~~~ 212 (696)
T TIGR02110 149 HPLRRFHAGSRDSLALPNTAFQQALRDFHRRHYQAGNMQLWLQGPQSLDELEQLAARFGASLAA 212 (696)
T ss_pred CCCCCCCCCCHHHHhCcccchHHHHHHHHHHhcchhcEEEEEEeCCCHHHHHHHHHHHhCCCCC
Confidence 4454 2333444444569999999999999999999999999999999999888776643
No 6
>PRK15101 protease3; Provisional
Probab=99.26 E-value=7.5e-11 Score=108.67 Aligned_cols=138 Identities=12% Similarity=0.007 Sum_probs=119.6
Q ss_pred ecceEEEeecCceeEEEEccccchHHHHHHHHHHHhccCCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhcC-
Q 029273 5 AGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD- 83 (196)
Q Consensus 5 Agl~~~~~~~~~g~~i~v~G~s~kl~~~l~~v~~~l~~~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~- 83 (196)
.|.+++.+.+.+.....++..+++++..|+.+.+.+.+|.++++++++.|..+..+++.. .++|...+...+...+++
T Consensus 114 ~Gg~~NA~T~~d~T~y~~~~~~~~l~~aL~~~ad~~~~P~f~~~~~erE~~~v~~E~~~~-~~~~~~~~~~~~~~~~~~~ 192 (961)
T PRK15101 114 HGGSHNASTASYRTAFYLEVENDALPPAVDRLADAIAEPLLDPKNADRERNAVNAELTMA-RSRDGMRMAQVSAETINPA 192 (961)
T ss_pred hCCCccceECCCceEEEEEcCHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHhhCCCC
Confidence 356778888888888999999999999999999999999999999999999999999976 468989988888877774
Q ss_pred CCCC--hhHHHhhCCCC----CHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHhccC
Q 029273 84 QTWP--WMEELEVLPHL----EAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKG 143 (196)
Q Consensus 84 ~~~~--~~~~~~~l~~i----t~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~ 143 (196)
|+|+ ..+..+.|+++ +.++|++|+++++.+.++.+.|+||++.+++.++++..++.|+..
T Consensus 193 hp~~~~~~G~~etl~~~~~~~~~~~L~~f~~~~Y~p~nm~lvv~G~~~~~~l~~~~~~~F~~~~~~ 258 (961)
T PRK15101 193 HPGSRFSGGNLETLSDKPGSKLQDALVDFYQRYYSANLMKAVIYSNQPLPELAKLAADTFGRVPNK 258 (961)
T ss_pred CCcccCCCCCHHHhhcCCchHHHHHHHHHHHHhCcccceEEEEEcCCCHHHHHHHHHHHhccCCCC
Confidence 4444 33456677765 799999999999999999999999999999999999888888543
No 7
>PTZ00432 falcilysin; Provisional
Probab=98.94 E-value=3.2e-08 Score=92.28 Aligned_cols=132 Identities=11% Similarity=0.087 Sum_probs=110.3
Q ss_pred EEEeecCceeEEEEccccc-hHHHHHHHHHHHhccCCcChhhH--HH---------H--------------------HHH
Q 029273 9 YGINHTESGFEVTVVGYNH-KLRILLETIFQKIAQFKVKPDRF--SV---------I--------------------KEM 56 (196)
Q Consensus 9 ~~~~~~~~g~~i~v~G~s~-kl~~~l~~v~~~l~~~~~~~~~F--~~---------~--------------------k~~ 56 (196)
++...+.+.....+...++ .+..+++.+++.+.+|.+++++| .+ . |..
T Consensus 165 lNA~T~~D~T~Y~~~~~~e~d~~~~ldv~~d~v~~P~~~~~~~~f~qEgwh~E~~~~~~~~~~~~e~~~~~~~~l~~kgV 244 (1119)
T PTZ00432 165 LNAYTFKDRTSYLFASTNEKDFYNTADVYMDSVFQPNILEDKDIFKQEGWHYKVTKLKDDEKNADELGNVHDRHVSYSGI 244 (1119)
T ss_pred ccccCCCCceEEEeccCCHHHHHHHHHHHHHHHhCcCcccccchhhhhhhhccccccccccccccccccccccccchhhH
Confidence 4556666788888888886 59999999999999999988764 32 1 455
Q ss_pred HHHHhhcccccChHHHHHHHHHHhhcCCCCC--hhHHHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHH
Q 029273 57 VTKEYHNNKFLQPFQLAMYYCSLILQDQTWP--WMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQ 134 (196)
Q Consensus 57 ~~~~l~n~~~~~P~~~a~~~~~~ll~~~~~~--~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~ 134 (196)
+..+++.. .++|..++.+.+...++.++|. .-+..+.|.++|.+++++|+++++.+.++.++|+||++.+++.++++
T Consensus 245 V~~Emk~~-~~~p~~~~~~~~~~~lf~~pY~~~~~G~~~~I~~lt~e~l~~Fh~~~Y~P~N~~l~v~Gdid~~~~l~~l~ 323 (1119)
T PTZ00432 245 VYSEMKKR-FSDPLSFGYSVIYQNLFSNVYKYDSGGDPKDIVELTYEELVEFYKTYYGPKTATVYFYGPNDVTERLEFVD 323 (1119)
T ss_pred HHHHHHHh-hCCHHHHHHHHHHHHHhCCCCCCCCCCChHhhccCCHHHHHHHHHHhcCccceEEEEEcCCCHHHHHHHHH
Confidence 77888876 5799999999987777766655 34678999999999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q 029273 135 YIEDVFF 141 (196)
Q Consensus 135 ~~~~~l~ 141 (196)
...+.+.
T Consensus 324 ~~f~~~~ 330 (1119)
T PTZ00432 324 NYLTKHP 330 (1119)
T ss_pred HHHhhcc
Confidence 8876664
No 8
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=4.7e-08 Score=79.51 Aligned_cols=135 Identities=7% Similarity=0.058 Sum_probs=116.5
Q ss_pred cceEEEeecCceeEEEEccccchHHHHHHHHHHHhccCCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhcCC-
Q 029273 6 GLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ- 84 (196)
Q Consensus 6 gl~~~~~~~~~g~~i~v~G~s~kl~~~l~~v~~~l~~~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~~- 84 (196)
|..++.+.+.+.-..-+..++.++|..++.+.+.+.+..+.+..+++.|..++|+.+... +.-....++.+....+.+
T Consensus 103 GahLNAytSReqT~yyakal~~dv~kavdiLaDIlqns~L~~s~IerER~vILrEmqevd-~~~~eVVfdhLHatafQgt 181 (467)
T KOG0960|consen 103 GAHLNAYTSREQTVYYAKALSKDVPKAVDILADILQNSKLEESAIERERDVILREMQEVD-KNHQEVVFDHLHATAFQGT 181 (467)
T ss_pred HHHhcccccccceeeehhhccccchHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhcCC
Confidence 556667777778888999999999999999999999999999999999999999999875 345667788887766653
Q ss_pred C--CChhHHHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHhc
Q 029273 85 T--WPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFF 141 (196)
Q Consensus 85 ~--~~~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~ 141 (196)
+ .+..+-.+.+++|+.+||++|+.+.|...+|.+...|+++-++..++++..+..+.
T Consensus 182 PL~~tilGp~enI~si~r~DL~~yi~thY~~~RmVlaaaGgV~He~lv~la~k~fg~~~ 240 (467)
T KOG0960|consen 182 PLGRTILGPSENIKSISRADLKDYINTHYKASRMVLAAAGGVKHEELVKLAEKYFGDLS 240 (467)
T ss_pred cccccccChhhhhhhhhHHHHHHHHHhcccCccEEEEecCCcCHHHHHHHHHHHcCCCc
Confidence 3 34556789999999999999999999999999999999999999999998877653
No 9
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=98.43 E-value=2.2e-06 Score=61.90 Aligned_cols=82 Identities=12% Similarity=0.120 Sum_probs=75.0
Q ss_pred ecceEEEeecCceeEEEEccccchHHHHHHHHHHHhccCCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhcC-
Q 029273 5 AGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD- 83 (196)
Q Consensus 5 Agl~~~~~~~~~g~~i~v~G~s~kl~~~l~~v~~~l~~~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~- 83 (196)
.|.+++...+.+.+.+.+++.+++++.+++.+.+.+.+|.+++++|++.|..++.+++.. .++|...+...+...++.
T Consensus 60 ~G~~~~~~t~~d~t~~~~~~~~~~~~~~l~~l~~~~~~P~f~~~~~~~~r~~~~~ei~~~-~~~~~~~~~~~l~~~~f~~ 138 (149)
T PF00675_consen 60 LGASFNASTSRDSTSYSASVLSEDLEKALELLADMLFNPSFDEEEFEREREQILQEIEEI-KENPQELAFEKLHSAAFRG 138 (149)
T ss_dssp TTCEEEEEEESSEEEEEEEEEGGGHHHHHHHHHHHHHSBGGCHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHTT
T ss_pred hccccceEecccceEEEEEEecccchhHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHhcc
Confidence 478889999999999999999999999999999999999999999999999999999998 578999999999888885
Q ss_pred CCCC
Q 029273 84 QTWP 87 (196)
Q Consensus 84 ~~~~ 87 (196)
++|+
T Consensus 139 ~p~~ 142 (149)
T PF00675_consen 139 HPYG 142 (149)
T ss_dssp SGGG
T ss_pred CCCC
Confidence 4443
No 10
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=98.16 E-value=3.3e-06 Score=62.09 Aligned_cols=47 Identities=21% Similarity=0.310 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHhccC
Q 029273 97 HLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKG 143 (196)
Q Consensus 97 ~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~ 143 (196)
+||.+|+++|+++|+.+.++.++|+||++.+++.++++...+.+...
T Consensus 1 ~it~e~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~~~~l~~~ 47 (184)
T PF05193_consen 1 NITLEDLRAFYKKFYRPSNMTLVIVGDIDPDELEKLIEKYFGSLPKS 47 (184)
T ss_dssp C--HHHHHHHHHHHSSGGGEEEEEEESSGHHHHHHHHHHHHTTSSHS
T ss_pred CCCHHHHHHHHHHhcCccceEEEEEcCccHHHHHHHHHhhhhhhccc
Confidence 58999999999999999999999999999999999999888888643
No 11
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=2.6e-05 Score=63.96 Aligned_cols=135 Identities=11% Similarity=0.060 Sum_probs=112.1
Q ss_pred cceEEEeecCceeEEEEccccchHHHHHHHHHHHhccCCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhcCC-
Q 029273 6 GLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ- 84 (196)
Q Consensus 6 gl~~~~~~~~~g~~i~v~G~s~kl~~~l~~v~~~l~~~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~~- 84 (196)
|-.++.+.+.+.+.-.++.+++.++.++..+++.+.+|.+++++.+..|..+.-+++... ..|.-...+.+...-+..
T Consensus 94 GGn~~cqsSRetm~Yaas~~~~~v~sm~~lLadtV~~P~~~d~ev~~~~~~v~~E~~el~-~~Pe~lL~e~iH~Aay~~n 172 (472)
T KOG2067|consen 94 GGNCDCQSSRETMMYAASADSDGVDSMVELLADTVLNPKFTDQEVEEARRAVKYEIEELW-MRPEPLLTEMIHSAAYSGN 172 (472)
T ss_pred CCcccccccHhhhHHHHHhhhcccHHHHHHHHHHHhcccccHHHHHHHHHhhhheccccc-cCchhhHHHHHHHHHhccC
Confidence 445666777778888899999999999999999999999999999999999988888874 588777777776666643
Q ss_pred CCChh--HHHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHhcc
Q 029273 85 TWPWM--EELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFK 142 (196)
Q Consensus 85 ~~~~~--~~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~ 142 (196)
..... .-.+.++.|+.+.+.+|.+.++.+.++.+..+| +.-+++.++++.+...++.
T Consensus 173 tlg~pl~cp~~~i~~I~~~~l~~yl~~~ytp~rmVlA~vG-V~heelv~~~~~~~~~~~s 231 (472)
T KOG2067|consen 173 TLGLPLLCPEENIDKINREVLEEYLKYFYTPERMVLAGVG-VEHEELVEIAEKLLGDLPS 231 (472)
T ss_pred cccccccCChhhhhhhhHHHHHHHHHhcCChhheEeeecC-CCHHHHHHHHHHHhccCCc
Confidence 22111 124788899999999999999999999999999 7999999999998887755
No 12
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=97.92 E-value=0.00015 Score=65.83 Aligned_cols=108 Identities=14% Similarity=0.118 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHHhccCCcChhhHHHHH--------------HHHHHHhhcccccChHHHHHHHHHHhhcCC-CC--ChhH
Q 029273 28 KLRILLETIFQKIAQFKVKPDRFSVIK--------------EMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-TW--PWME 90 (196)
Q Consensus 28 kl~~~l~~v~~~l~~~~~~~~~F~~~k--------------~~~~~~l~n~~~~~P~~~a~~~~~~ll~~~-~~--~~~~ 90 (196)
.+-.|+...+|.+.+|-.+++.|.+-- --+-.+.+.. ..+|..+.++.+...+++. .| ..-+
T Consensus 112 Df~NLl~VYlDavf~PlL~~e~F~QEgwr~e~~~~~~l~~~GVVyNEMKGa-~ss~~~~~~~~~~~slfp~~ty~~~SGG 190 (978)
T COG1026 112 DFYNLLSVYLDAVFHPLLTKESFLQEGWRIEFKDESNLKYKGVVYNEMKGA-YSSGESVLSRAMQQSLFPGTTYGVNSGG 190 (978)
T ss_pred hHHHHHHHHHHhhhCcccchHHHhhhhhccccCCCccceeeeEEeehhccc-ccCchhHHHHHHHHhhCCCccccccCCC
Confidence 456788899999999988888776432 1233455665 5689999999999999963 33 3445
Q ss_pred HHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHH
Q 029273 91 ELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYI 136 (196)
Q Consensus 91 ~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~ 136 (196)
....|..+|+|++++||++++.+.++-+++.||+..++.++.++..
T Consensus 191 ~P~~I~~LtyE~~r~FHkk~Y~pSN~~i~~yGni~~~~~L~~iee~ 236 (978)
T COG1026 191 DPKNIPDLTYEEFRAFHKKHYHPSNCKIFVYGNIPTERLLDFIEEK 236 (978)
T ss_pred CcccccccCHHHHHHHHHHhCCccceEEEEECCCCHHHHHHHHHHh
Confidence 7789999999999999999999999999999999999999888764
No 13
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.0013 Score=59.64 Aligned_cols=136 Identities=13% Similarity=0.033 Sum_probs=103.6
Q ss_pred eEEEeecCceeEEEEccccchHHHHHHHHHHHhccCCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhcC-CCC
Q 029273 8 DYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD-QTW 86 (196)
Q Consensus 8 ~~~~~~~~~g~~i~v~G~s~kl~~~l~~v~~~l~~~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~-~~~ 86 (196)
+++.+...+.-..-+.--++.+...++.+++.+..|-++++..++.+..+-.++.....++ ..+..+....++.+ |++
T Consensus 97 s~NA~T~~~~T~fyFeV~~~al~~ALDrFa~ff~~PLf~~e~~dRE~~AV~sE~~~~~~~D-~~R~~~~~~~~~np~HP~ 175 (937)
T COG1025 97 SHNASTAGERTAFYFEVENDALEGALDRFADFFIEPLFNKEALDRERNAVNSEFTMNLTSD-GWRMYQVQALTANPGHPL 175 (937)
T ss_pred ccccccCCCceeEEEEecHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHhcCcCch-HHHHHHHHHhhcCCCCCc
Confidence 3444444444555556667899999999999999999999999999999999999875433 44444444444432 444
Q ss_pred Ch--hHHHhhCCC----CCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHhccCC
Q 029273 87 PW--MEELEVLPH----LEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGS 144 (196)
Q Consensus 87 ~~--~~~~~~l~~----it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~~ 144 (196)
+. .+-+++|.. ...++++.|++++++...|.+.|.||=+.+++.+++..+.+.++.+.
T Consensus 176 srFs~GN~~TL~~~p~~~v~~el~ef~~~~YSa~~M~lviyg~q~ldeL~~~a~~~F~~Ipn~~ 239 (937)
T COG1025 176 SKFSTGNLETLSDKPGLVVQQELKEFHEKHYSANNMKLVIYGNQPLDELAKLAADLFGDIPNRA 239 (937)
T ss_pred cccCCCChhhhccCCCchHHHHHHHHHHHhcChhheEEEEecCCCHHHHHHHHHHHhCcCCCCC
Confidence 32 133455554 66899999999999999999999999999999999999999887654
No 14
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0022 Score=52.99 Aligned_cols=119 Identities=13% Similarity=0.118 Sum_probs=90.1
Q ss_pred EEEeecCce-eEEEEccccchHHHHHHHHHHHhccC--CcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhc-CC
Q 029273 9 YGINHTESG-FEVTVVGYNHKLRILLETIFQKIAQF--KVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQ-DQ 84 (196)
Q Consensus 9 ~~~~~~~~g-~~i~v~G~s~kl~~~l~~v~~~l~~~--~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~-~~ 84 (196)
|+-+.++.| |.|..+.--+..++.++.+...|.+. .+++++.+|+|.++...+--..-..|- .+-+.-++++. +.
T Consensus 327 fnhsy~DtGlfgi~~s~~P~~a~~aveli~~e~~~~~~~v~~~el~RAK~qlkS~LlMNLESR~V-~~EDvGRQVL~~g~ 405 (472)
T KOG2067|consen 327 FNHSYSDTGLFGIYASAPPQAANDAVELIAKEMINMAGGVTQEELERAKTQLKSMLLMNLESRPV-AFEDVGRQVLTTGE 405 (472)
T ss_pred hhccccCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcccccch-hHHHHhHHHHhccC
Confidence 334445666 57888888889999999999988885 489999999999999887655333443 33344455554 55
Q ss_pred CCChhHHHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHH
Q 029273 85 TWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEA 129 (196)
Q Consensus 85 ~~~~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a 129 (196)
.-.+++.++.++++|.+|+.++..+++.. ...+...||++.--.
T Consensus 406 rk~p~e~~~~Ie~lt~~DI~rva~kvlt~-~p~va~~Gd~~~lpt 449 (472)
T KOG2067|consen 406 RKPPDEFIKKIEQLTPSDISRVASKVLTG-KPSVAAFGDGTGLPT 449 (472)
T ss_pred cCCHHHHHHHHHhcCHHHHHHHHHHHhcC-CceeccCCcccCCcc
Confidence 67889999999999999999999999874 566777898875333
No 15
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=97.32 E-value=0.0066 Score=50.13 Aligned_cols=128 Identities=10% Similarity=0.057 Sum_probs=100.2
Q ss_pred ecceEEEeecCceeEEEEccccchHHHHHHHHHHHhccCCcChhhHHHHH-HHHHHHhhcccccChHHHHHHHHHHhhcC
Q 029273 5 AGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIK-EMVTKEYHNNKFLQPFQLAMYYCSLILQD 83 (196)
Q Consensus 5 Agl~~~~~~~~~g~~i~v~G~s~kl~~~l~~v~~~l~~~~~~~~~F~~~k-~~~~~~l~n~~~~~P~~~a~~~~~~ll~~ 83 (196)
-|-.++...+.+-|.++++...|.++..+..+.+.+..|.|.+=+.+-.. ..+..++ . ...|+.++++.+...-+.
T Consensus 91 ~GG~Lss~~tRe~~~~tvt~lrd~~~~~l~~L~~V~~~paFkPwEl~D~~~~ti~~~l--~-~~t~~~~a~e~lH~aAfR 167 (429)
T KOG2583|consen 91 LGGTLSSTATRELIGLTVTFLRDDLEYYLSLLGDVLDAPAFKPWELEDVVLATIDADL--A-YQTPYTIAIEQLHAAAFR 167 (429)
T ss_pred hCceeeeeeecceEEEEEEEecccHHHHHHHHHHhhcccCcCchhhhhhhhhhhHHHh--h-hcChHHHHHHHHHHHHHh
Confidence 46677888888999999999999999999999999999999887777666 4444443 2 468999999988887775
Q ss_pred CCCChhHHH--hhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHH
Q 029273 84 QTWPWMEEL--EVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYI 136 (196)
Q Consensus 84 ~~~~~~~~~--~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~ 136 (196)
+..+..=.. -.+.+++.+||.+|.++.|-..++.++-. |++-+....+.+..
T Consensus 168 ngLgnslY~p~~~vg~vss~eL~~Fa~k~fv~gn~~lvg~-nvd~~~L~~~~~~~ 221 (429)
T KOG2583|consen 168 NGLGNSLYSPGYQVGSVSSSELKDFAAKHFVKGNAVLVGV-NVDHDDLKQFADEY 221 (429)
T ss_pred cccCCcccCCcccccCccHHHHHHHHHHHhhccceEEEec-CCChHHHHHHHHHh
Confidence 422221111 24789999999999999999888877655 47888888888776
No 16
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=97.31 E-value=0.0041 Score=52.85 Aligned_cols=120 Identities=18% Similarity=0.235 Sum_probs=91.2
Q ss_pred ecceEEEee--c---Cce-eEEEEccc---cchHHHHHHHHHHHhccCC---cChhhHHHHHHHHHHHhhcccccChHHH
Q 029273 5 AGLDYGINH--T---ESG-FEVTVVGY---NHKLRILLETIFQKIAQFK---VKPDRFSVIKEMVTKEYHNNKFLQPFQL 72 (196)
Q Consensus 5 Agl~~~~~~--~---~~g-~~i~v~G~---s~kl~~~l~~v~~~l~~~~---~~~~~F~~~k~~~~~~l~n~~~~~P~~~ 72 (196)
.|+-|++++ + ..| +.+.+..- .++....+..+++.+..-. +++++++..|..+...+-.. .+.|...
T Consensus 300 ~glay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~k~~~~~~~~~~-~~s~~~~ 378 (438)
T COG0612 300 RGLAYSVSSFSDFLSDSGLFSIYAGTAPENPEKTAELVEEILKALKKGLKGPFTEEELDAAKQLLIGLLLLS-LDSPSSI 378 (438)
T ss_pred cCceeeeccccccccccCCceEEEEecCCChhhHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhhc-cCCHHHH
Confidence 466666652 1 223 33444333 3456666666666666654 88999999999999998886 5799999
Q ss_pred HHHHHHHhhcC-CCCChhHHHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCC
Q 029273 73 AMYYCSLILQD-QTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIE 125 (196)
Q Consensus 73 a~~~~~~ll~~-~~~~~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~ 125 (196)
+.......... ..-+.++..+.++++|.+|+.++.++++.+....+.++|+..
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~~~~~~~~~~~~~p~~ 432 (438)
T COG0612 379 AELLGQYLLLGGSLITLEELLERIEAVTLEDVNAVAKKLLAPENLTIVVLGPEK 432 (438)
T ss_pred HHHHHHHHHhcCCccCHHHHHHHHHhcCHHHHHHHHHHhcCCCCcEEEEEcccc
Confidence 99888888874 456778899999999999999999999999888889998854
No 17
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.003 Score=55.59 Aligned_cols=125 Identities=11% Similarity=0.148 Sum_probs=91.4
Q ss_pred eeEEEEccccchHHHHHHHHHHHhccCCcChhhHHHHHH----------HHHHHhhcccccChHHHHHHHHHHhhcCC--
Q 029273 17 GFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKE----------MVTKEYHNNKFLQPFQLAMYYCSLILQDQ-- 84 (196)
Q Consensus 17 g~~i~v~G~s~kl~~~l~~v~~~l~~~~~~~~~F~~~k~----------~~~~~l~n~~~~~P~~~a~~~~~~ll~~~-- 84 (196)
..+++.-|. |.+..+|-..++.|.+|.++++.|...-- -+-.+.++.. .+-.....+....+++++
T Consensus 100 ~YtLStag~-dGFlklLPvy~dHiL~P~Ltdeaf~TEVyHI~geg~d~GVVySEMq~~e-s~~~~im~~~~~~~~yP~~s 177 (1022)
T KOG0961|consen 100 AYTLSTAGS-DGFLKLLPVYIDHILTPMLTDEAFATEVYHITGEGNDAGVVYSEMQDHE-SEMESIMDRKTKEVIYPPFS 177 (1022)
T ss_pred eEEeecccc-cchHHHhHHHHHhhcCcccchhhhhhheeeecCCCCccceeehhhhhhh-cccchhhhhhhheeecCCCC
Confidence 345555553 45667788888999999998888865431 2233344432 223344455556667653
Q ss_pred --CCChhHHHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHhccC
Q 029273 85 --TWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKG 143 (196)
Q Consensus 85 --~~~~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~ 143 (196)
++..-+....|..+|.+.+++||++++...++-+.|-|+++.++...+++.+.+.+.+.
T Consensus 178 gY~~eTGG~~knLR~lt~ekIR~yHK~~Y~~sN~cviVcG~v~~d~lL~~m~~~~neile~ 238 (1022)
T KOG0961|consen 178 GYAVETGGRLKNLRELTLEKIRDYHKKFYHLSNMCVIVCGMVDHDQLLEIMNNVENEILEH 238 (1022)
T ss_pred CceeccCCChhhHHHhhHHHHHHHHHHhccccceEEEEecCcCHHHHHHHHHHHHhhhhhc
Confidence 23345688999999999999999999999999999999999999999999999877654
No 18
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0044 Score=57.03 Aligned_cols=133 Identities=11% Similarity=-0.029 Sum_probs=99.0
Q ss_pred EEeecCceeEEEEccccchHHHHHHHHHHHhccCCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhcC-CCCCh
Q 029273 10 GINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD-QTWPW 88 (196)
Q Consensus 10 ~~~~~~~g~~i~v~G~s~kl~~~l~~v~~~l~~~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~-~~~~~ 88 (196)
+.....+.-...+.-=.+++...|+.+++.+..|-++++.-++-+..+-.++++... +-.+.-......+-.+ ++++.
T Consensus 103 NA~T~~e~T~y~F~V~~~~l~~ALDrFaqFf~~Plf~~~a~eREv~AVdSE~~~nl~-~D~wr~~ql~~~l~~~~hp~~k 181 (974)
T KOG0959|consen 103 NAYTDSEHTNYYFDVQHDHLEGALDRFAQFFSDPLFNKSATEREVGAVDSEHEKNLN-SDGWRFDQLLRSLSNPGHPYSK 181 (974)
T ss_pred ccccccccceEEEecchHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHHHhccC-cchhHHHHHHHHhcCCCCcchh
Confidence 333333444444445677899999999999999999999999999999999999854 4455555565555553 33332
Q ss_pred --hHHHhhCCCCC-----HHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHhccC
Q 029273 89 --MEELEVLPHLE-----AEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKG 143 (196)
Q Consensus 89 --~~~~~~l~~it-----~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~ 143 (196)
.+..++|.+.. .+.+..|+++|++...|.+.|+|+-+.+....++...++.+...
T Consensus 182 F~tGN~~tL~~~p~~~~~r~~L~kF~k~~Yssn~M~l~i~G~eslD~Le~lv~~~F~~i~N~ 243 (974)
T KOG0959|consen 182 FSTGNKKTLLEGPREIDLRDELLKFYKNWYSSNIMTLVIVGKESLDVLESLVTRLFDEISNK 243 (974)
T ss_pred ccccchhhhhhccccchHHHHHHHHHHhhcccccceEEEEcCCChhHHHHHHHHHccccccc
Confidence 23445555555 89999999999999999999999999988888766666555443
No 19
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.06 Score=44.70 Aligned_cols=117 Identities=12% Similarity=0.152 Sum_probs=83.3
Q ss_pred eEEEeecCcee-EEEEcc-ccchHHHHHHHHHHHhccC--CcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhc-
Q 029273 8 DYGINHTESGF-EVTVVG-YNHKLRILLETIFQKIAQF--KVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQ- 82 (196)
Q Consensus 8 ~~~~~~~~~g~-~i~v~G-~s~kl~~~l~~v~~~l~~~--~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~- 82 (196)
+++.+..+.|+ .+.+-+ =...+..++..++..-... ..++.+-+++|.++...+-.. .+..-..|-+.-+++|+
T Consensus 329 sFnt~YkDTGLwG~y~V~~~~~~iddl~~~vl~eW~rL~~~vteaEV~RAKn~Lkt~Lll~-ldgttpi~ediGrqlL~~ 407 (467)
T KOG0960|consen 329 SFNTSYKDTGLWGIYFVTDNLTMIDDLIHSVLKEWMRLATSVTEAEVERAKNQLKTNLLLS-LDGTTPIAEDIGRQLLTY 407 (467)
T ss_pred hhhcccccccceeEEEEecChhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH-hcCCCchHHHHHHHHhhc
Confidence 44555555553 222222 2234455555444433332 589999999999999997665 34333457777777776
Q ss_pred CCCCChhHHHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCC
Q 029273 83 DQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIE 125 (196)
Q Consensus 83 ~~~~~~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~ 125 (196)
+...++.|+-+-+++||..+++++..+++-..-+-+..+|.+.
T Consensus 408 Grri~l~El~~rId~vt~~~Vr~va~k~iyd~~iAia~vG~ie 450 (467)
T KOG0960|consen 408 GRRIPLAELEARIDAVTAKDVREVASKYIYDKDIAIAAVGPIE 450 (467)
T ss_pred CCcCChHHHHHHHhhccHHHHHHHHHHHhhcCCcceeeecccc
Confidence 5678899999999999999999999999988889999999875
No 20
>PTZ00432 falcilysin; Provisional
Probab=95.49 E-value=0.094 Score=49.91 Aligned_cols=124 Identities=10% Similarity=0.012 Sum_probs=82.7
Q ss_pred eeEEEEccccchHHHHHHHHHHHhccCCcCh-hhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhcCC-----CCC---
Q 029273 17 GFEVTVVGYNHKLRILLETIFQKIAQFKVKP-DRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-----TWP--- 87 (196)
Q Consensus 17 g~~i~v~G~s~kl~~~l~~v~~~l~~~~~~~-~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~~-----~~~--- 87 (196)
.+.|++.+..+|++.+++.+.+.+.+..|+. +++..+-.+.+.++++....+.+..|...+..-+... .+.
T Consensus 756 ~~~v~~k~l~~~~~~~~~l~~eil~~~~f~d~~rl~~il~~~~~~~~~~~~~~Gh~~A~~~~~s~~S~~~~~~e~~~G~~ 835 (1119)
T PTZ00432 756 YLNVRAKVLKHKVNEMVDIVLEALKDADFSNSKKGVEILKRKINGMKTVFSSKGHKFALKRMKSKFSVSDYADELVNGYS 835 (1119)
T ss_pred EEEEEEEEhhhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCHHHHHHHHhcCHH
Confidence 5899999999999999999999999999975 4488888888888888765577777775544333211 111
Q ss_pred hhHHHhhCC----CCC----HHHHHHHHHHhhhhhheeeEeecCCCh-HHHHHHHHHHHHHh
Q 029273 88 WMEELEVLP----HLE----AEDLAKFVPMMLSRTFLECYIAGNIES-NEAGSIIQYIEDVF 140 (196)
Q Consensus 88 ~~~~~~~l~----~it----~~dl~~f~~~~~~~~~~~~lv~GNi~~-~~a~~~~~~~~~~l 140 (196)
.-..+..|. .-. .+.|....+.+|...++.+.|+|+.+. +...+.+..+.+.+
T Consensus 836 ~~~fl~~l~~~~~e~~~~~v~~~L~~i~~~i~~~~~l~~~vt~~~~~~~~~~~~~~~~~~~l 897 (1119)
T PTZ00432 836 QLLFLKETLVPLAEKDWSKVESKLNEIRNKLLSMKNLTVNVTGDSELLDSLLDDSTTFLKKL 897 (1119)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCcCCcEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 111222211 011 334667778888888999999998743 23334334444444
No 21
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=95.13 E-value=0.19 Score=46.45 Aligned_cols=111 Identities=17% Similarity=0.189 Sum_probs=81.9
Q ss_pred eeEEEEccccchHHHHHHHHHHHhccCCc-ChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhcCC-----CCC---
Q 029273 17 GFEVTVVGYNHKLRILLETIFQKIAQFKV-KPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-----TWP--- 87 (196)
Q Consensus 17 g~~i~v~G~s~kl~~~l~~v~~~l~~~~~-~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~~-----~~~--- 87 (196)
.+.|++..+++|...+++.|-+.|.+..| |.+|...+-+++..++.+.....+...|......-++.. .++
T Consensus 618 ~~~i~~K~l~~k~~~~~~~i~~~l~~~~F~D~~Rlkell~q~~~~l~~~vr~sG~~~A~~~~~s~~~~~~~l~e~~~Gl~ 697 (978)
T COG1026 618 SFSISGKALRSKVEKLFELIREILANTDFHDRERLKELLEQYLSDLTSSVRNSGHSIASSLANSRLSSAGALKELLNGLS 697 (978)
T ss_pred eEEEEEEehhhhhhHHHHHHHHHHhcCCcCcHHHHHHHHHHHHhhhHHhhhccchHHHHHHhhcccccchhHHHHhcChh
Confidence 58888899999999999999999999999 789999999999999999876668888877665555431 111
Q ss_pred hhHHHhhCCC-----CC---HHHHHHHHHHhhhhhheeeEeecCCChH
Q 029273 88 WMEELEVLPH-----LE---AEDLAKFVPMMLSRTFLECYIAGNIESN 127 (196)
Q Consensus 88 ~~~~~~~l~~-----it---~~dl~~f~~~~~~~~~~~~lv~GNi~~~ 127 (196)
....+..|.+ .. .+-|++.+++++...++.+++.|+++..
T Consensus 698 q~k~i~~l~~~~~~~~~~ei~~kL~~l~~~i~~~~n~~i~i~~~~~~~ 745 (978)
T COG1026 698 QVKFLRELSSNFEENFEKEIADKLQALRKKIFQTNNLRIAIIGDIDKI 745 (978)
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCceEEEEecChhhh
Confidence 1122222211 11 2347777788888888889999997743
No 22
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=94.72 E-value=0.15 Score=45.40 Aligned_cols=68 Identities=15% Similarity=0.110 Sum_probs=53.4
Q ss_pred cChHHHHHHHHHHhhcC-CCCChh--HHHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHH
Q 029273 67 LQPFQLAMYYCSLILQD-QTWPWM--EELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQ 134 (196)
Q Consensus 67 ~~P~~~a~~~~~~ll~~-~~~~~~--~~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~ 134 (196)
.+|.......+.+.|++ +.|+.. +--..+..+|+++|++||++++.+.+..++.+||+.-++-...++
T Consensus 200 S~~~~if~~~~Qq~L~p~~tYgv~SGGDPl~IpdLt~eelk~FHr~~YHPSNAri~tYGn~Pl~~~l~~l~ 270 (998)
T KOG2019|consen 200 SDPDYIFGMLFQQALFPENTYGVNSGGDPLDIPDLTYEELKEFHRQHYHPSNARIFTYGNFPLEDLLKQLE 270 (998)
T ss_pred cChhHHHHHHHHHhhCccccccccCCCCcccCccccHHHHHHHHHhccCCCcceeEeecCchHHHHHHHHH
Confidence 45555556666666664 445432 345678999999999999999999999999999999998888776
No 23
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=91.89 E-value=0.81 Score=35.92 Aligned_cols=57 Identities=9% Similarity=0.131 Sum_probs=41.1
Q ss_pred eeEEEEccccchHHHHHHHHHHHhccCCcCh-hhHHHHHHHHHHHhhcccccChHHHH
Q 029273 17 GFEVTVVGYNHKLRILLETIFQKIAQFKVKP-DRFSVIKEMVTKEYHNNKFLQPFQLA 73 (196)
Q Consensus 17 g~~i~v~G~s~kl~~~l~~v~~~l~~~~~~~-~~F~~~k~~~~~~l~n~~~~~P~~~a 73 (196)
++.|+..++.++++.+++.+.+.|.++.|++ +++..+-.+...++++......+..|
T Consensus 161 ~l~is~k~L~~~~~~~~~ll~eil~~~~f~d~~rl~~ll~~~~s~~~~~i~~~Gh~~A 218 (248)
T PF08367_consen 161 YLVISAKCLDEKLDEAFELLSEILTETDFDDKERLKELLKELKSDMESSIISSGHSYA 218 (248)
T ss_dssp EEEEEEEEEGGGHHHHHHHHHHHHHCB-TT-HHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred EEEEEEEeHhhhHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 5889999999999999999999999999875 46666666666666665433444333
No 24
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=85.99 E-value=11 Score=31.76 Aligned_cols=106 Identities=16% Similarity=0.180 Sum_probs=67.7
Q ss_pred ecCce-eEEEEccccchHHHHHHHHHHHhccCC---cChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhcCCCCCh
Q 029273 13 HTESG-FEVTVVGYNHKLRILLETIFQKIAQFK---VKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPW 88 (196)
Q Consensus 13 ~~~~g-~~i~v~G~s~kl~~~l~~v~~~l~~~~---~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~~~~~~ 88 (196)
.++.| +.+.+.+=..+....++-....++... ++-..=..+...+...+.+. ..++..+......+. -++
T Consensus 312 ysDsGL~gv~~~~~~~~a~~~v~s~v~~lks~~~~~id~~~~~a~~~~l~~~~~ss--~~a~~~~~~~~a~~~----~~~ 385 (429)
T KOG2583|consen 312 YSDSGLFGVYVSAQGSQAGKVVSSEVKKLKSALVSDIDNAKVKAAIKALKASYLSS--VEALELATGSQANLV----SEP 385 (429)
T ss_pred ccCCceEEEEEEecCccHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhcc--hHHHHHhhHHHhcCC----CCh
Confidence 33445 466666666777777777777777654 33333333333344333332 245555444333322 278
Q ss_pred hHHHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCC
Q 029273 89 MEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIE 125 (196)
Q Consensus 89 ~~~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~ 125 (196)
++.+..+++|+-.|+....++++.. .+.+..+||++
T Consensus 386 d~~i~~id~Vt~sdV~~a~kk~~s~-kls~aA~Gnl~ 421 (429)
T KOG2583|consen 386 DAFIQQIDKVTASDVQKAAKKFLSG-KLSLAAYGNLS 421 (429)
T ss_pred HHHHHHhccccHHHHHHHHHHhccC-cceeeeecccc
Confidence 8999999999999999999998843 56777889976
No 25
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=82.84 E-value=4 Score=36.86 Aligned_cols=109 Identities=13% Similarity=0.120 Sum_probs=75.0
Q ss_pred eEEEEccccchHHHHHHHHHHHhccCCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhcCC---CCChhHH--H
Q 029273 18 FEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ---TWPWMEE--L 92 (196)
Q Consensus 18 ~~i~v~G~s~kl~~~l~~v~~~l~~~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~~---~~~~~~~--~ 92 (196)
+.+++..=.++-+..+.-+-..+....||++|-...-++++.++.-. +.+.-..+..+....+|+. .++.+++ .
T Consensus 636 vn~~Ikv~a~~Y~~~v~Wi~~~l~~~VfD~~Ri~~~~~~~l~~i~~~-KRdg~~vlss~~~~~lY~~~slk~s~d~L~~E 714 (1022)
T KOG0961|consen 636 VNLRIKVGADKYPLLVKWIQIFLQGVVFDPSRIHQCAQKLLGEIRDR-KRDGCTVLSSAVASMLYGKNSLKISFDELVLE 714 (1022)
T ss_pred eeEEEEEccCCcchhHHHHHHHhhhhccCHHHHHHHHHHHHhhhhhh-hcCccEehHHHHHHHHhcccchhhcccHHHHH
Confidence 67777777888888999998899998999999999999999999887 4576777777777778752 2333332 1
Q ss_pred hhCCCCC----------HHHHHHHHHHhhhhhheeeEeecCCChH
Q 029273 93 EVLPHLE----------AEDLAKFVPMMLSRTFLECYIAGNIESN 127 (196)
Q Consensus 93 ~~l~~it----------~~dl~~f~~~~~~~~~~~~lv~GNi~~~ 127 (196)
+-+++|. ++.+.....-.+....+.+.|+|+|++-
T Consensus 715 k~l~ei~~~v~n~~~~Il~~~e~mR~y~l~~n~~~ihvvgDI~ki 759 (1022)
T KOG0961|consen 715 KLLEEISKDVMNNPEAILEKLEQMRSYALFSNGVNIHVVGDIDKI 759 (1022)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhcceEEEEEeehhcC
Confidence 1112211 2223333332334456899999999864
No 26
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=68.26 E-value=13 Score=19.09 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=19.8
Q ss_pred HHHHHHHhccCCcChhhHHHHHHHHH
Q 029273 33 LETIFQKIAQFKVKPDRFSVIKEMVT 58 (196)
Q Consensus 33 l~~v~~~l~~~~~~~~~F~~~k~~~~ 58 (196)
+..+-+....-.+++++|+..|.+++
T Consensus 5 L~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 5 LEKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 44555556666799999999999875
No 27
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=66.53 E-value=9 Score=28.32 Aligned_cols=42 Identities=17% Similarity=0.151 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHHHHHhh-hhhheeeEeecCCChHHHHHHHHHH
Q 029273 95 LPHLEAEDLAKFVPMML-SRTFLECYIAGNIESNEAGSIIQYI 136 (196)
Q Consensus 95 l~~it~~dl~~f~~~~~-~~~~~~~lv~GNi~~~~a~~~~~~~ 136 (196)
|++.+.+++++.++... ...++.+.+.|+|+.+.+.++.+.=
T Consensus 106 lD~~~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya~~g 148 (169)
T PF01729_consen 106 LDNMSPEDLKEAVEELRELNPRVKIEASGGITLENIAEYAKTG 148 (169)
T ss_dssp EES-CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHHHTT
T ss_pred ecCcCHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHHhcC
Confidence 46789999999998654 3446999999999999999887653
No 28
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=60.59 E-value=1.3e+02 Score=27.71 Aligned_cols=122 Identities=13% Similarity=0.123 Sum_probs=80.5
Q ss_pred EEEcc--ccchHHHHHHHHHHHhccCCcC-hhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhcCCCCChhH------
Q 029273 20 VTVVG--YNHKLRILLETIFQKIAQFKVK-PDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWME------ 90 (196)
Q Consensus 20 i~v~G--~s~kl~~~l~~v~~~l~~~~~~-~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~~~~~~~~------ 90 (196)
|-++| ...+.+.+++.+-..+.+..++ +++|..+..+...++.|...+.-+..|.......+....|-.++
T Consensus 652 i~~~~~~l~rn~~dlfel~n~il~e~~f~n~dkfkvlvk~s~s~~~n~i~dsGH~~A~~rs~a~l~~ag~i~EqlgGl~q 731 (998)
T KOG2019|consen 652 IVFSGSMLDRNADDLFELWNKILQETCFTNQDKFKVLVKQSASRMTNGIADSGHGFAAARSAAMLTPAGWISEQLGGLSQ 731 (998)
T ss_pred EEechhhhcCChhHHHHHHHHHhcccCcccHHHHHHHHHHHHHHhhccCCcccchhHhhhhhcccCcccchHhHhcchHH
Confidence 44444 5567899999999999998875 68899999999999999866666777777777777665564433
Q ss_pred --HHhhCCCCC-------HHHHHHHHHHhhhhhheeeEeecCC-ChHHHHHHHHHHHHHhc
Q 029273 91 --ELEVLPHLE-------AEDLAKFVPMMLSRTFLECYIAGNI-ESNEAGSIIQYIEDVFF 141 (196)
Q Consensus 91 --~~~~l~~it-------~~dl~~f~~~~~~~~~~~~lv~GNi-~~~~a~~~~~~~~~~l~ 141 (196)
.+..|+... .+-|.+..+.++...++.+.|.-+= ....+.+.++.+.+.+.
T Consensus 732 l~fl~~L~~~~d~d~~~i~~kL~eIrk~ll~~ng~~~~itAd~~q~~~vEkav~kFl~~lp 792 (998)
T KOG2019|consen 732 LEFLHRLEEKVDNDWEPIVSKLTEIRKSLLNTNGMIVNITADPKQLTNVEKAVEKFLDSLP 792 (998)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEecCcccchhHHHHHHHHHHhcc
Confidence 233333333 2335555566777777777775442 33344455555555554
No 29
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=57.99 E-value=23 Score=26.79 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=52.3
Q ss_pred HHHHHHHHhhcCCCCC---hhHHHhhCC--CCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHh
Q 029273 72 LAMYYCSLILQDQTWP---WMEELEVLP--HLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVF 140 (196)
Q Consensus 72 ~a~~~~~~ll~~~~~~---~~~~~~~l~--~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l 140 (196)
.++......+..+.|. .+|...++. =|+.+++.++.+. .+..+++.+.|.--+++.+++++.+.+.-
T Consensus 102 ~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~--rp~~~evVlTGR~~p~~Lie~ADlVTEm~ 173 (191)
T PRK05986 102 EGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNA--RPGMQHVVITGRGAPRELIEAADLVTEMR 173 (191)
T ss_pred HHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHc--CCCCCEEEEECCCCCHHHHHhCchheecc
Confidence 4455666666666676 477766664 6899999999975 78889999999999999999988876544
No 30
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=57.95 E-value=25 Score=28.24 Aligned_cols=41 Identities=12% Similarity=0.296 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHHHHHhhh---hhheeeEeecCCChHHHHHHHHH
Q 029273 95 LPHLEAEDLAKFVPMMLS---RTFLECYIAGNIESNEAGSIIQY 135 (196)
Q Consensus 95 l~~it~~dl~~f~~~~~~---~~~~~~lv~GNi~~~~a~~~~~~ 135 (196)
|++.+.+++++.....-. +.++.+.+.|+|+.+.+.++++.
T Consensus 208 LDn~~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~t 251 (278)
T PRK08385 208 LDNMTPEEIREVIEALKREGLRERVKIEVSGGITPENIEEYAKL 251 (278)
T ss_pred ECCCCHHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHHHHc
Confidence 578899999998876533 24788999999999999988765
No 31
>PF12674 Zn_ribbon_2: Putative zinc ribbon domain
Probab=55.07 E-value=27 Score=22.43 Aligned_cols=38 Identities=11% Similarity=0.217 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHh
Q 029273 96 PHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVF 140 (196)
Q Consensus 96 ~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l 140 (196)
..+|++++.++...++.... .+++++|+.++......|
T Consensus 40 ~~~t~eemie~~~~~~~~~~-------~~~~~~a~~~~~~~lp~L 77 (81)
T PF12674_consen 40 QDITMEEMIEFCVPFMDEFN-------GMTPEEARKMMPRYLPTL 77 (81)
T ss_pred ecCCHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHccCC
Confidence 47899999999999887643 399999999887664443
No 32
>KOG3460 consensus Small nuclear ribonucleoprotein (snRNP) LSM3 [RNA processing and modification]
Probab=54.30 E-value=6.3 Score=25.23 Aligned_cols=46 Identities=13% Similarity=0.310 Sum_probs=39.0
Q ss_pred eEEEEccccchHHHHHHHHHHHhccCCcChhhHHHHHHHHHHHhhc
Q 029273 18 FEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHN 63 (196)
Q Consensus 18 ~~i~v~G~s~kl~~~l~~v~~~l~~~~~~~~~F~~~k~~~~~~l~n 63 (196)
+.=++.+|.+++..+|..+-+.+.....+++.|+.+.....+.+.-
T Consensus 28 l~G~L~afD~HlNmvL~d~eetit~~e~~E~~~e~~~k~~~r~~em 73 (91)
T KOG3460|consen 28 LRGTLHAFDEHLNMVLGDVEETITTVEIDEDTYEEIVKTTKRTVEM 73 (91)
T ss_pred hhcchhhhHHhhhhhhhhhhheEEEeeccchhHHHHHhhhhcceeE
Confidence 4446789999999999999999999999999999888777776543
No 33
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=53.74 E-value=13 Score=20.52 Aligned_cols=25 Identities=20% Similarity=0.402 Sum_probs=20.1
Q ss_pred CCCHHHHHHHHHHhhhhhheeeEeecC
Q 029273 97 HLEAEDLAKFVPMMLSRTFLECYIAGN 123 (196)
Q Consensus 97 ~it~~dl~~f~~~~~~~~~~~~lv~GN 123 (196)
-.+.++|..|++.+ ++ .-.++|||.
T Consensus 17 Had~~~L~~~i~~~-~p-~~vilVHGe 41 (43)
T PF07521_consen 17 HADREELLEFIEQL-NP-RKVILVHGE 41 (43)
T ss_dssp S-BHHHHHHHHHHH-CS-SEEEEESSE
T ss_pred CCCHHHHHHHHHhc-CC-CEEEEecCC
Confidence 45689999999998 66 788889995
No 34
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=53.15 E-value=29 Score=28.11 Aligned_cols=39 Identities=8% Similarity=0.105 Sum_probs=31.5
Q ss_pred CCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHH
Q 029273 95 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQY 135 (196)
Q Consensus 95 l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~ 135 (196)
|++.+.+++++.++.. +.++.+-+.|||+.+.+.++++.
T Consensus 231 LDnmspe~l~~av~~~--~~~~~lEaSGGIt~~ni~~yA~t 269 (294)
T PRK06978 231 LDNFTLDMMREAVRVT--AGRAVLEVSGGVNFDTVRAFAET 269 (294)
T ss_pred ECCCCHHHHHHHHHhh--cCCeEEEEECCCCHHHHHHHHhc
Confidence 4778999999988754 33788999999999999888664
No 35
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=52.73 E-value=30 Score=28.06 Aligned_cols=39 Identities=13% Similarity=0.132 Sum_probs=32.1
Q ss_pred CCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHH
Q 029273 95 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQY 135 (196)
Q Consensus 95 l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~ 135 (196)
|++.+.+++++.++.. +.++.+.+.|+|+.+.+.++++.
T Consensus 234 LDn~s~e~~~~av~~~--~~~~~ieaSGGI~~~ni~~yA~t 272 (296)
T PRK09016 234 LDNFTTEQMREAVKRT--NGRALLEVSGNVTLETLREFAET 272 (296)
T ss_pred eCCCChHHHHHHHHhh--cCCeEEEEECCCCHHHHHHHHhc
Confidence 4778999999999843 34788999999999999988655
No 36
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=51.71 E-value=17 Score=21.87 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhhh--hheee-EeecCCChHHHHHHHHHHHHHhc
Q 029273 101 EDLAKFVPMMLSR--TFLEC-YIAGNIESNEAGSIIQYIEDVFF 141 (196)
Q Consensus 101 ~dl~~f~~~~~~~--~~~~~-lv~GNi~~~~a~~~~~~~~~~l~ 141 (196)
.++.+|.++++.. .-+.- +=.|-||+++|..+.+.+.....
T Consensus 7 ~el~~l~~qm~e~kK~~idk~Ve~G~iTqeqAd~ik~~id~~~~ 50 (59)
T PF10925_consen 7 KELKALYKQMLELKKQIIDKYVEAGVITQEQADAIKKHIDQRQE 50 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 4566677776632 22222 33899999999999988877664
No 37
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=51.70 E-value=33 Score=27.46 Aligned_cols=41 Identities=12% Similarity=0.149 Sum_probs=32.3
Q ss_pred CCCCCHHHHHHHHHHhhh-hhheeeEeecCCChHHHHHHHHH
Q 029273 95 LPHLEAEDLAKFVPMMLS-RTFLECYIAGNIESNEAGSIIQY 135 (196)
Q Consensus 95 l~~it~~dl~~f~~~~~~-~~~~~~lv~GNi~~~~a~~~~~~ 135 (196)
|++.+++++++.++..-. ..++.+.+.|+|+++.+.++++.
T Consensus 208 LDn~~~e~l~~~v~~~~~~~~~~~ieAsGgIt~~ni~~ya~~ 249 (273)
T PRK05848 208 CDNMSVEEIKEVVAYRNANYPHVLLEASGNITLENINAYAKS 249 (273)
T ss_pred ECCCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHHc
Confidence 478899999999975321 24678999999999999988665
No 38
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=50.87 E-value=35 Score=27.62 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHH
Q 029273 95 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQY 135 (196)
Q Consensus 95 l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~ 135 (196)
|++.+.+++++.++.. . .++.+-+.|||+.+.+.+++..
T Consensus 223 LDnmspe~l~~av~~~-~-~~~~leaSGGI~~~ni~~yA~t 261 (290)
T PRK06559 223 LDNMSLEQIEQAITLI-A-GRSRIECSGNIDMTTISRFRGL 261 (290)
T ss_pred ECCCCHHHHHHHHHHh-c-CceEEEEECCCCHHHHHHHHhc
Confidence 4778999999998743 3 3788999999999999988665
No 39
>TIGR01669 phage_XkdX phage uncharacterized protein, XkdX family. This model represents a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=50.66 E-value=13 Score=21.01 Aligned_cols=34 Identities=12% Similarity=0.119 Sum_probs=20.5
Q ss_pred CHHHHHHHHHH-hhhhhheeeEee-cCCChHHHHHH
Q 029273 99 EAEDLAKFVPM-MLSRTFLECYIA-GNIESNEAGSI 132 (196)
Q Consensus 99 t~~dl~~f~~~-~~~~~~~~~lv~-GNi~~~~a~~~ 132 (196)
|+++++.|+.. .+....+..+|- |-||+++..++
T Consensus 5 ~~e~iK~~Y~~g~~t~e~v~~~V~~~~IT~eey~eI 40 (45)
T TIGR01669 5 SFEKVKTYYLWGYYSNEDVNKFVEKKLITREQYKVI 40 (45)
T ss_pred CHHHHHHHHHcCCCCHHHHHHHhhcCccCHHHHHHH
Confidence 56677766654 334445544443 77777777765
No 40
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=50.55 E-value=32 Score=27.59 Aligned_cols=41 Identities=15% Similarity=0.108 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHH
Q 029273 95 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQY 135 (196)
Q Consensus 95 l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~ 135 (196)
|++.+.+++++..+..-.+.++.+-++|||+.+.+..+++.
T Consensus 214 LDNm~~e~~~~av~~l~~~~~~~lEaSGgIt~~ni~~yA~t 254 (280)
T COG0157 214 LDNMSPEELKEAVKLLGLAGRALLEASGGITLENIREYAET 254 (280)
T ss_pred ecCCCHHHHHHHHHHhccCCceEEEEeCCCCHHHHHHHhhc
Confidence 46789999999988865555788888999999998887655
No 41
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=50.07 E-value=51 Score=20.97 Aligned_cols=22 Identities=9% Similarity=0.048 Sum_probs=10.9
Q ss_pred HHHHHHHhhc-CCCCChhHHHhh
Q 029273 73 AMYYCSLILQ-DQTWPWMEELEV 94 (196)
Q Consensus 73 a~~~~~~ll~-~~~~~~~~~~~~ 94 (196)
+-+++..++. +.+|+.+++.++
T Consensus 4 gHeVL~mml~~~~~~t~~~L~~~ 26 (77)
T TIGR03853 4 GHEVLNLMLASGEPYTRESLKAA 26 (77)
T ss_pred HHHHHHHHHHcCCCcCHHHHHHH
Confidence 4445555544 345555555444
No 42
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=49.06 E-value=46 Score=20.62 Aligned_cols=42 Identities=14% Similarity=0.021 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHhhcC--CCCChhHHHhhCCCCCHHHHHHHHHHh
Q 029273 69 PFQLAMYYCSLILQD--QTWPWMEELEVLPHLEAEDLAKFVPMM 110 (196)
Q Consensus 69 P~~~a~~~~~~ll~~--~~~~~~~~~~~l~~it~~dl~~f~~~~ 110 (196)
+...+...+...... +..+...+.++|..+.+.|+.+.+++.
T Consensus 39 ~~~~~~~~L~~W~~~~~~~at~~~L~~aL~~~~~~d~~~~i~~~ 82 (83)
T PF00531_consen 39 LREQTYEMLQRWRQREGPNATVDQLIQALRDIGRNDLAEKIEQM 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHGSTSSHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHCCcHHHHHHHHhh
Confidence 556666666555543 567888999999999999999888765
No 43
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.23 E-value=42 Score=27.14 Aligned_cols=41 Identities=10% Similarity=-0.005 Sum_probs=32.2
Q ss_pred CCCCCHHHHHHHHHHhh-hhhheeeEeecCCChHHHHHHHHH
Q 029273 95 LPHLEAEDLAKFVPMML-SRTFLECYIAGNIESNEAGSIIQY 135 (196)
Q Consensus 95 l~~it~~dl~~f~~~~~-~~~~~~~lv~GNi~~~~a~~~~~~ 135 (196)
|++.+.++++..++..- ...++.+.+.|+|+.+.+.++++.
T Consensus 225 LDnm~~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~~yA~t 266 (289)
T PRK07896 225 LDNFPVWQTQEAVQRRDARAPTVLLESSGGLTLDTAAAYAET 266 (289)
T ss_pred eCCCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhc
Confidence 36789999999987432 235788999999999999987665
No 44
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=46.84 E-value=34 Score=22.24 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=27.7
Q ss_pred hhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHH
Q 029273 93 EVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIED 138 (196)
Q Consensus 93 ~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~ 138 (196)
.-|..+|.+||..|.+++=-+ +++++|..+++.+.+
T Consensus 10 ~Kln~iT~~eLlkyskqy~i~----------it~~QA~~I~~~lr~ 45 (85)
T PF11116_consen 10 QKLNNITAKELLKYSKQYNIS----------ITKKQAEQIANILRG 45 (85)
T ss_pred HHHhcCCHHHHHHHHHHhCCC----------CCHHHHHHHHHHHhc
Confidence 457889999999999986433 788888888776643
No 45
>PRK14425 acylphosphatase; Provisional
Probab=46.32 E-value=31 Score=22.75 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=29.6
Q ss_pred CceecceEEEeecCce-eEEEEccccchHHHHHHHHH
Q 029273 2 NMVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 37 (196)
Q Consensus 2 A~~Agl~~~~~~~~~g-~~i~v~G~s~kl~~~l~~v~ 37 (196)
|...|+.=.+....+| +.|.+.|-.+.+..++..+-
T Consensus 29 A~~~gl~G~V~N~~dGsVei~~qG~~~~le~f~~~l~ 65 (94)
T PRK14425 29 AERLGLTGWVRNESDGSVTALIAGPDSAISAMIERFR 65 (94)
T ss_pred HHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHh
Confidence 4556777788888888 99999999999888887775
No 46
>PRK14429 acylphosphatase; Provisional
Probab=45.97 E-value=36 Score=22.19 Aligned_cols=37 Identities=16% Similarity=0.158 Sum_probs=29.4
Q ss_pred CceecceEEEeecCce-eEEEEccccchHHHHHHHHHH
Q 029273 2 NMVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQ 38 (196)
Q Consensus 2 A~~Agl~~~~~~~~~g-~~i~v~G~s~kl~~~l~~v~~ 38 (196)
|...|++=.+....+| +.|.+.|-.+++..++..+.+
T Consensus 25 A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 62 (90)
T PRK14429 25 ARALGVTGYVTNCEDGSVEILAQGSDPAVDNLIAWCEV 62 (90)
T ss_pred HHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 4455777778878888 999999999888888777754
No 47
>PRK14431 acylphosphatase; Provisional
Probab=45.96 E-value=39 Score=22.02 Aligned_cols=37 Identities=11% Similarity=0.195 Sum_probs=28.5
Q ss_pred CceecceEEEeecCceeEEEEccccchHHHHHHHHHH
Q 029273 2 NMVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQ 38 (196)
Q Consensus 2 A~~Agl~~~~~~~~~g~~i~v~G~s~kl~~~l~~v~~ 38 (196)
|...|+.=.+....+|+.+.+.|-.+.+..++..+.+
T Consensus 25 A~~~gl~G~V~N~~dgVei~~qG~~~~l~~f~~~l~~ 61 (89)
T PRK14431 25 AMNYNIVGTVQNVDDYVEIYAQGDDADLERFIQGVIE 61 (89)
T ss_pred HhhcCCEEEEEECCCcEEEEEEcCHHHHHHHHHHHhc
Confidence 4455777677777779999999988888777777654
No 48
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=44.72 E-value=47 Score=26.76 Aligned_cols=39 Identities=23% Similarity=0.299 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHH
Q 029273 95 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQY 135 (196)
Q Consensus 95 l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~ 135 (196)
|++.+.+++++.+... . .+..+-+.|||+.+.+.++++.
T Consensus 219 LDn~s~e~l~~av~~~-~-~~~~leaSGgI~~~ni~~yA~t 257 (281)
T PRK06543 219 LDNFSLDDLREGVELV-D-GRAIVEASGNVNLNTVGAIAST 257 (281)
T ss_pred ECCCCHHHHHHHHHHh-C-CCeEEEEECCCCHHHHHHHHhc
Confidence 4788999999998854 2 3557889999999999988664
No 49
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=44.72 E-value=41 Score=27.32 Aligned_cols=130 Identities=15% Similarity=0.142 Sum_probs=83.3
Q ss_pred ecceEEEeecCceeEEEEccccchHHHHHHHHHHHh--ccCC-----cChhhHHHHHHHHHHHhhcccccC---hH----
Q 029273 5 AGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKI--AQFK-----VKPDRFSVIKEMVTKEYHNNKFLQ---PF---- 70 (196)
Q Consensus 5 Agl~~~~~~~~~g~~i~v~G~s~kl~~~l~~v~~~l--~~~~-----~~~~~F~~~k~~~~~~l~n~~~~~---P~---- 70 (196)
.|+.=.+.....||.-+|+|..+....++..+...- .... -++..|.++|=++.+++-.....+ |.
T Consensus 33 ~~vkGrillA~EGINgtvsG~~e~~~~~~~~l~a~~~f~~l~~K~s~~~~~pF~r~kVk~kkEIV~lg~~ddv~p~~~vG 112 (308)
T COG1054 33 LGVKGRILLAHEGINGTVSGSAEAIEAYMAWLRADPGFADLRFKISEADEKPFWRLKVKLKKEIVALGVEDDVDPLENVG 112 (308)
T ss_pred cCceeEEEEccCCcceeEecCHHHHHHHHHHHHhCcccccceeeeccccCCCcceEEEeehhhheecCCCCCcCcccccc
Confidence 356666777889999999999999988887776542 1111 245779999988888877654332 32
Q ss_pred --HHHHHHHHHhhcCC---------CCCh--hHHHhhC--CCCCHHHHHHHHHHhh---hhhheeeEeecCCChHHHHHH
Q 029273 71 --QLAMYYCSLILQDQ---------TWPW--MEELEVL--PHLEAEDLAKFVPMML---SRTFLECYIAGNIESNEAGSI 132 (196)
Q Consensus 71 --~~a~~~~~~ll~~~---------~~~~--~~~~~~l--~~it~~dl~~f~~~~~---~~~~~~~lv~GNi~~~~a~~~ 132 (196)
-... -...++.++ .|.. --...|+ +.-|+.++-.+++++. ....+.++..|-|-.|.|..+
T Consensus 113 ~yl~p~-~wn~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~tFrefP~~v~~~~~~~~~KkVvmyCTGGIRCEKas~~ 191 (308)
T COG1054 113 TYLSPK-DWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIETFREFPAWVEENLDLLKDKKVVMYCTGGIRCEKASAW 191 (308)
T ss_pred CccCHH-HHHHHhcCCCeEEEEcCcceeEeeeeecCccCCChhhhhhhHHHHHHHHHhccCCcEEEEcCCceeehhhHHH
Confidence 1122 223333322 1111 0011222 3457788888887655 344789999999999999987
Q ss_pred HHH
Q 029273 133 IQY 135 (196)
Q Consensus 133 ~~~ 135 (196)
+..
T Consensus 192 m~~ 194 (308)
T COG1054 192 MKE 194 (308)
T ss_pred HHH
Confidence 654
No 50
>PRK14420 acylphosphatase; Provisional
Probab=44.67 E-value=40 Score=21.93 Aligned_cols=38 Identities=18% Similarity=0.277 Sum_probs=28.9
Q ss_pred CceecceEEEeecCce-eEEEEccccchHHHHHHHHHHH
Q 029273 2 NMVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQK 39 (196)
Q Consensus 2 A~~Agl~~~~~~~~~g-~~i~v~G~s~kl~~~l~~v~~~ 39 (196)
|.--|+.=.+....+| +.|.+.|-.+++..++..+-+.
T Consensus 25 A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~~ 63 (91)
T PRK14420 25 ADKRKLTGWVKNRDDGTVEIEAEGPEEALQLFLDAIEKG 63 (91)
T ss_pred HHHcCCEEEEEECCCCcEEEEEEECHHHHHHHHHHHHhC
Confidence 3445676677777888 9999999888887777777653
No 51
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=44.46 E-value=52 Score=26.45 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=31.6
Q ss_pred CCCCCHHHHHHHHHHhh-hhhheeeEeecCCChHHHHHHHHH
Q 029273 95 LPHLEAEDLAKFVPMML-SRTFLECYIAGNIESNEAGSIIQY 135 (196)
Q Consensus 95 l~~it~~dl~~f~~~~~-~~~~~~~lv~GNi~~~~a~~~~~~ 135 (196)
|++.+.+++++..+..- ...++.+.+.|+|+.+.+..+.+.
T Consensus 214 lDn~~~e~l~~~v~~l~~~~~~~~leasGGI~~~ni~~ya~~ 255 (277)
T TIGR01334 214 LDKFTPQQLHHLHERLKFFDHIPTLAAAGGINPENIADYIEA 255 (277)
T ss_pred ECCCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhc
Confidence 36788899888887653 245778899999999998887654
No 52
>PRK14440 acylphosphatase; Provisional
Probab=44.19 E-value=37 Score=22.18 Aligned_cols=36 Identities=31% Similarity=0.388 Sum_probs=28.2
Q ss_pred CceecceEEEeecCce-eEEEEccccchHHHHHHHHH
Q 029273 2 NMVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 37 (196)
Q Consensus 2 A~~Agl~~~~~~~~~g-~~i~v~G~s~kl~~~l~~v~ 37 (196)
|...|++=.+....+| +.+.+.|-.+++..++..+.
T Consensus 26 A~~~gl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~ 62 (90)
T PRK14440 26 AIRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERIK 62 (90)
T ss_pred HHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHh
Confidence 4455777777777888 99999998888887777665
No 53
>PRK14430 acylphosphatase; Provisional
Probab=43.75 E-value=36 Score=22.34 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=27.7
Q ss_pred CceecceEEEeecCce-eEEEEccccchHHHHHHHH
Q 029273 2 NMVAGLDYGINHTESG-FEVTVVGYNHKLRILLETI 36 (196)
Q Consensus 2 A~~Agl~~~~~~~~~g-~~i~v~G~s~kl~~~l~~v 36 (196)
|...|+.=.+....+| +.+.+.|-.+.+..++..+
T Consensus 27 A~~lgl~G~VrN~~dGsVei~~qG~~~~i~~f~~~l 62 (92)
T PRK14430 27 ADDLGLGGWVRNRADGTVEVMASGTVRQLEALRAWM 62 (92)
T ss_pred HHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHH
Confidence 4455676677777788 9999999999988887777
No 54
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=42.82 E-value=31 Score=29.37 Aligned_cols=94 Identities=15% Similarity=0.123 Sum_probs=51.9
Q ss_pred hhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhcCCCCChhH-HHhhCCCCCHHHHHHH--HHHhhhh--hheeeEee
Q 029273 47 PDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWME-ELEVLPHLEAEDLAKF--VPMMLSR--TFLECYIA 121 (196)
Q Consensus 47 ~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~~~~~~~~-~~~~l~~it~~dl~~f--~~~~~~~--~~~~~lv~ 121 (196)
+.+|..+|+.++.+..+.. --......+...+....-.... --+.+..|+++|+.+= .+.+... .+-.++|-
T Consensus 4 p~rf~~lK~~L~~~~~~~~---~v~~sw~rll~~l~~~~~~i~~~G~~~IP~i~f~di~~~~~~~~~~~~ir~rG~~VIR 80 (416)
T PF07350_consen 4 PARFAELKRSLIAKPGNEE---AVFASWERLLEALEREIEEIAAKGSSIIPEIDFADIENGGVSEEFLAEIRRRGCVVIR 80 (416)
T ss_dssp -HHHHHHHHHHHHHHS-HH---HHHHHHHHHHHHHHHHHHHHHHCT--SS-EEEHHHHHCT---HHHHHHHHHHSEEEEC
T ss_pred HHHHHHHHHHHHhhcCCHH---HHHHHHHHHHHHHHHHHHHHHHhCCCCCceeeHHHHhCCCCCHHHHHHHHhcCEEEEe
Confidence 4789999999997777642 1122222222212110000000 0245566667766543 3333332 35788999
Q ss_pred cCCChHHHHHHHHHHHHHhccC
Q 029273 122 GNIESNEAGSIIQYIEDVFFKG 143 (196)
Q Consensus 122 GNi~~~~a~~~~~~~~~~l~~~ 143 (196)
|-|.+++|...-+.+.+-+..+
T Consensus 81 ~Vvp~~ea~~w~~e~~~Y~~~n 102 (416)
T PF07350_consen 81 GVVPREEALAWKQELKEYLKAN 102 (416)
T ss_dssp TSS-HHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999988665
No 55
>PRK14445 acylphosphatase; Provisional
Probab=42.60 E-value=47 Score=21.66 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=29.0
Q ss_pred CceecceEEEeecCce-eEEEEccccchHHHHHHHHH
Q 029273 2 NMVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 37 (196)
Q Consensus 2 A~~Agl~~~~~~~~~g-~~i~v~G~s~kl~~~l~~v~ 37 (196)
|...|+.=.+....+| +.+.+.|-.+++..++..+.
T Consensus 27 A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~ 63 (91)
T PRK14445 27 ASELNLSGWVRNLPDGTVEIEAQGSSGMIDELIKQAE 63 (91)
T ss_pred HhhCCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHH
Confidence 4556777778888888 99999998888888777774
No 56
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=42.38 E-value=84 Score=20.08 Aligned_cols=23 Identities=4% Similarity=0.018 Sum_probs=12.8
Q ss_pred HHHHHHHHhhc-CCCCChhHHHhh
Q 029273 72 LAMYYCSLILQ-DQTWPWMEELEV 94 (196)
Q Consensus 72 ~a~~~~~~ll~-~~~~~~~~~~~~ 94 (196)
++-+++..++. +.+|+.+++.++
T Consensus 5 HgHeVL~mmi~~~~~~t~~~L~~a 28 (78)
T PF10678_consen 5 HGHEVLNMMIESGNPYTKEELKAA 28 (78)
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHH
Confidence 45566666654 345666555444
No 57
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=41.66 E-value=85 Score=19.40 Aligned_cols=44 Identities=16% Similarity=0.264 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHhc
Q 029273 97 HLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFF 141 (196)
Q Consensus 97 ~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~ 141 (196)
--+++|.....+.+ ...++.++=..+++.+++..+++.+.+...
T Consensus 6 p~~~~D~~~i~~~l-~~g~~Vivnl~~l~~~~~~Ri~Dfl~G~~~ 49 (73)
T PF04472_consen 6 PKSFEDAREIVDAL-REGKIVIVNLENLDDEEAQRILDFLSGAVY 49 (73)
T ss_dssp -SSGGGHHHHHHHH-HTT--EEEE-TTS-HHHHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHH-HcCCEEEEECCCCCHHHHHHHHHHHhchhe
Confidence 34678999866655 445888888999999999999999888764
No 58
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=41.66 E-value=34 Score=20.77 Aligned_cols=27 Identities=11% Similarity=0.212 Sum_probs=20.8
Q ss_pred hhCCCCCHHHHHHHHHHhh---hhhheeeE
Q 029273 93 EVLPHLEAEDLAKFVPMML---SRTFLECY 119 (196)
Q Consensus 93 ~~l~~it~~dl~~f~~~~~---~~~~~~~l 119 (196)
.-+++++-+|+++|...++ .+.++|+.
T Consensus 11 rGvd~lsT~dI~~y~~~y~~~~~~~~IEWI 40 (62)
T PF10309_consen 11 RGVDELSTDDIKAYFSEYFDEEGPFRIEWI 40 (62)
T ss_pred EcCCCCCHHHHHHHHHHhcccCCCceEEEe
Confidence 4578899999999999985 45566653
No 59
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.57 E-value=55 Score=26.39 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHH
Q 029273 95 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQY 135 (196)
Q Consensus 95 l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~ 135 (196)
|++.+.+++++.++.. . .+..+.+.|+|+.+.+.++++.
T Consensus 220 LDn~s~e~l~~av~~~-~-~~~~leaSGGI~~~ni~~yA~t 258 (281)
T PRK06106 220 LDNMTPDTLREAVAIV-A-GRAITEASGRITPETAPAIAAS 258 (281)
T ss_pred eCCCCHHHHHHHHHHh-C-CCceEEEECCCCHHHHHHHHhc
Confidence 4678899999998843 3 3445889999999999888665
No 60
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=40.98 E-value=61 Score=26.17 Aligned_cols=40 Identities=10% Similarity=0.123 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHhh-hhhheeeEeecCCChHHHHHHHHH
Q 029273 96 PHLEAEDLAKFVPMML-SRTFLECYIAGNIESNEAGSIIQY 135 (196)
Q Consensus 96 ~~it~~dl~~f~~~~~-~~~~~~~lv~GNi~~~~a~~~~~~ 135 (196)
++.+.+++++.++..- ...++.+-+.|+|+.+.+.++++.
T Consensus 216 Dn~~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~~yA~t 256 (284)
T PRK06096 216 DKFSPQQATEIAQIAPSLAPHCTLSLAGGINLNTLKNYADC 256 (284)
T ss_pred CCCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhc
Confidence 6678888888876432 124677888888888888877655
No 61
>PRK14446 acylphosphatase; Provisional
Probab=38.85 E-value=67 Score=20.90 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=27.5
Q ss_pred CceecceEEEeecCce-eEEEEccccchHHHHHHHHH
Q 029273 2 NMVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 37 (196)
Q Consensus 2 A~~Agl~~~~~~~~~g-~~i~v~G~s~kl~~~l~~v~ 37 (196)
|..-|+.=.+....+| +.|.+.|-.+.+..++..+.
T Consensus 25 A~~lgl~G~V~N~~dGsVei~~qG~~~~l~~f~~~l~ 61 (88)
T PRK14446 25 AVALGLVGHARNQADGSVEVVAAGSAAALEALEAWLW 61 (88)
T ss_pred HeeCCeEEEEEECCCCCEEEEEEeCHHHHHHHHHHHh
Confidence 4556777788888899 99999997777666666554
No 62
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=38.73 E-value=73 Score=25.78 Aligned_cols=41 Identities=12% Similarity=0.205 Sum_probs=29.5
Q ss_pred CCCCCHHHHHHHHHHhhh-hhheeeEeecCCChHHHHHHHHH
Q 029273 95 LPHLEAEDLAKFVPMMLS-RTFLECYIAGNIESNEAGSIIQY 135 (196)
Q Consensus 95 l~~it~~dl~~f~~~~~~-~~~~~~lv~GNi~~~~a~~~~~~ 135 (196)
|++.+.+++++.....-. ..++.+.+.|+|+.+.+.+++..
T Consensus 222 LDn~~~e~l~~av~~~~~~~~~i~leAsGGIt~~ni~~ya~t 263 (288)
T PRK07428 222 LDNMPVDLMQQAVQLIRQQNPRVKIEASGNITLETIRAVAET 263 (288)
T ss_pred ECCCCHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHc
Confidence 367788888888764321 34678888999998888877544
No 63
>PRK14424 acylphosphatase; Provisional
Probab=38.02 E-value=51 Score=21.76 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=28.0
Q ss_pred CceecceEEEeecCce-eEEEEccccchHHHHHHHHH
Q 029273 2 NMVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 37 (196)
Q Consensus 2 A~~Agl~~~~~~~~~g-~~i~v~G~s~kl~~~l~~v~ 37 (196)
|...|+.=.+....+| +.|.+.|-.+.+..++..+-
T Consensus 30 A~~~gl~G~V~N~~dG~Vei~~qG~~~~v~~f~~~l~ 66 (94)
T PRK14424 30 AHALGLRGWVANLEDGTVEAMIQGPAAQIDRMLAWLR 66 (94)
T ss_pred HHHcCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHH
Confidence 4455777777777788 99999999988877777774
No 64
>PRK14436 acylphosphatase; Provisional
Probab=37.84 E-value=53 Score=21.45 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=28.3
Q ss_pred CceecceEEEeecCce-eEEEEccccchHHHHHHHHH
Q 029273 2 NMVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 37 (196)
Q Consensus 2 A~~Agl~~~~~~~~~g-~~i~v~G~s~kl~~~l~~v~ 37 (196)
|..-|+.=.+....+| +.+.+.|-.+++..++..+-
T Consensus 27 A~~l~l~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 63 (91)
T PRK14436 27 ARKLGVNGWVRNLPDGSVEAVLEGDEERVEALIGWAH 63 (91)
T ss_pred HHHcCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHh
Confidence 3445677777777888 99999999989888887664
No 65
>PRK14435 acylphosphatase; Provisional
Probab=37.68 E-value=51 Score=21.47 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=27.6
Q ss_pred CceecceEEEeecCce-eEEEEccccchHHHHHHHHH
Q 029273 2 NMVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 37 (196)
Q Consensus 2 A~~Agl~~~~~~~~~g-~~i~v~G~s~kl~~~l~~v~ 37 (196)
|..-|+.=.+....+| +.+.+.|-.+++..++..+.
T Consensus 25 A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~ 61 (90)
T PRK14435 25 AKSLGVKGYVMNMDDGSVFIHAEGDENALRRFLNEVA 61 (90)
T ss_pred HHHhCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHh
Confidence 3445677677777777 99999998888888777774
No 66
>PRK14447 acylphosphatase; Provisional
Probab=37.49 E-value=62 Score=21.33 Aligned_cols=36 Identities=14% Similarity=0.120 Sum_probs=28.3
Q ss_pred CceecceEEEeecCce--eEEEEccccchHHHHHHHHH
Q 029273 2 NMVAGLDYGINHTESG--FEVTVVGYNHKLRILLETIF 37 (196)
Q Consensus 2 A~~Agl~~~~~~~~~g--~~i~v~G~s~kl~~~l~~v~ 37 (196)
|.-.|+.=.+....+| +.+.+.|-.+++..++..+-
T Consensus 27 A~~~gl~G~V~N~~dG~~Vei~~qG~~~~l~~f~~~l~ 64 (95)
T PRK14447 27 ANRNGVRGWVRNRSDGRTVEAVLEGPRDAVLKVIEWAR 64 (95)
T ss_pred HhhcCeEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHh
Confidence 4455777777777888 89999999999888888664
No 67
>PRK14444 acylphosphatase; Provisional
Probab=37.46 E-value=52 Score=21.53 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=28.3
Q ss_pred CceecceEEEeecCce-eEEEEccccchHHHHHHHHH
Q 029273 2 NMVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 37 (196)
Q Consensus 2 A~~Agl~~~~~~~~~g-~~i~v~G~s~kl~~~l~~v~ 37 (196)
|..-|++=.+....+| +.+.+.|-.+++..+++.+-
T Consensus 27 A~~lgl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 63 (92)
T PRK14444 27 AREAGVKGWVRNLSDGRVEAVFEGSRPAVQKMISWCY 63 (92)
T ss_pred HHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHH
Confidence 4445777777777888 89999999999888877754
No 68
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=37.37 E-value=44 Score=25.89 Aligned_cols=58 Identities=17% Similarity=0.227 Sum_probs=35.2
Q ss_pred CHHHHHHHHHH-----hhhhhheeeEeecCCChHHHHHHHHHHHHHhccCCCCCccCCCCCCCCccceEEeCCCceEEEe
Q 029273 99 EAEDLAKFVPM-----MLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYS 173 (196)
Q Consensus 99 t~~dl~~f~~~-----~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~l~~g~~~~~~ 173 (196)
|++.+.-|..+ +.+..++-+..||| ..+.+++.+.+.- ..+ ..-+.||.|.+++|+
T Consensus 155 t~~Rv~Pyw~~~I~p~l~~Gk~VlI~AHGN----SlRaLiK~L~~iS------------d~d---I~~l~IPtg~Plvye 215 (230)
T COG0588 155 TVERVLPYWEDDIAPNLKSGKNVLIVAHGN----SLRALIKYLEGIS------------DED---ILDLNIPTGIPLVYE 215 (230)
T ss_pred HHHHhhHHHHHHhhHHHhCCCeEEEEecch----hHHHHHHHHhCCC------------HHH---hhhcccCCCCcEEEE
Confidence 34445555544 33556788888999 4556655553321 111 234789999999997
Q ss_pred cC
Q 029273 174 NQ 175 (196)
Q Consensus 174 ~~ 175 (196)
..
T Consensus 216 ld 217 (230)
T COG0588 216 LD 217 (230)
T ss_pred EC
Confidence 54
No 69
>PRK14449 acylphosphatase; Provisional
Probab=37.35 E-value=59 Score=21.16 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=28.6
Q ss_pred CceecceEEEeecCce-eEEEEccccchHHHHHHHHHHH
Q 029273 2 NMVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQK 39 (196)
Q Consensus 2 A~~Agl~~~~~~~~~g-~~i~v~G~s~kl~~~l~~v~~~ 39 (196)
|..-|+.=.+....+| +.|.+.|-.+.+..++..+.+.
T Consensus 26 A~~lgl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~~ 64 (90)
T PRK14449 26 AVSLGITGYAENLYDGSVEVVAEGDEENIKELINFIKTG 64 (90)
T ss_pred HHHcCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhhC
Confidence 3344666677777888 9999999888888877777553
No 70
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=37.14 E-value=71 Score=23.62 Aligned_cols=41 Identities=17% Similarity=0.239 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHHhhh--hhheeeEeecC---------CChHHHHHHHHHH
Q 029273 96 PHLEAEDLAKFVPMMLS--RTFLECYIAGN---------IESNEAGSIIQYI 136 (196)
Q Consensus 96 ~~it~~dl~~f~~~~~~--~~~~~~lv~GN---------i~~~~a~~~~~~~ 136 (196)
+.=+++-++.|+..+-. ...++++|+|| ++.++|...++.+
T Consensus 97 DrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesv 148 (218)
T KOG0088|consen 97 DRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESV 148 (218)
T ss_pred chHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhh
Confidence 34457778888877553 34688899998 4455666655554
No 71
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=37.14 E-value=74 Score=23.62 Aligned_cols=67 Identities=13% Similarity=0.079 Sum_probs=50.5
Q ss_pred HHHHHHHHhhcCCCCC---hhHHHhhC--CCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHh
Q 029273 72 LAMYYCSLILQDQTWP---WMEELEVL--PHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVF 140 (196)
Q Consensus 72 ~a~~~~~~ll~~~~~~---~~~~~~~l--~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l 140 (196)
.++......+..+.|. .+|...++ .=|+.+++.++.+. .+.++++.+.|---+++.+++++.+...-
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~--rp~~~evVlTGR~~p~~l~e~AD~VTEm~ 155 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQE--RPGHQHVIITGRGCPQDLLELADLVTEMR 155 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHh--CCCCCEEEEECCCCCHHHHHhCceeeeec
Confidence 4455556666666665 46766555 46899999999875 78899999999999999999888875543
No 72
>PRK14451 acylphosphatase; Provisional
Probab=36.56 E-value=54 Score=21.31 Aligned_cols=36 Identities=17% Similarity=0.073 Sum_probs=28.1
Q ss_pred CceecceEEEeecCce-eEEEEccccchHHHHHHHHH
Q 029273 2 NMVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 37 (196)
Q Consensus 2 A~~Agl~~~~~~~~~g-~~i~v~G~s~kl~~~l~~v~ 37 (196)
|..-|+.=.+....+| +.+.+.|-.+++..++..+.
T Consensus 26 A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 62 (89)
T PRK14451 26 AEQLMISGWARNLADGRVEVFACGKEDKLEEFYTWLQ 62 (89)
T ss_pred HHHhCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHh
Confidence 3445777777777888 99999998888877777775
No 73
>PRK14427 acylphosphatase; Provisional
Probab=36.49 E-value=64 Score=21.22 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=28.6
Q ss_pred CceecceEEEeecCce-eEEEEccccchHHHHHHHHHH
Q 029273 2 NMVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQ 38 (196)
Q Consensus 2 A~~Agl~~~~~~~~~g-~~i~v~G~s~kl~~~l~~v~~ 38 (196)
|...|+.=.+....+| +.|.+.|-.+++..++..+.+
T Consensus 29 A~~lgl~G~V~N~~dGsVei~~qG~~~~i~~f~~~l~~ 66 (94)
T PRK14427 29 AEELGLTGTVRNLDDGSVALVAEGTGEQVEKLLDWLNS 66 (94)
T ss_pred HHHcCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHhh
Confidence 4455777777777888 999999988888777777654
No 74
>PRK14428 acylphosphatase; Provisional
Probab=35.72 E-value=59 Score=21.62 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=28.0
Q ss_pred CceecceEEEeecCce-eEEEEccccchHHHHHHHHH
Q 029273 2 NMVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 37 (196)
Q Consensus 2 A~~Agl~~~~~~~~~g-~~i~v~G~s~kl~~~l~~v~ 37 (196)
|..-|+.=.+....+| +.+.+.|-.+.+..+++.+.
T Consensus 31 A~~lgL~G~V~N~~dGsVei~~qG~~~~i~~fi~~l~ 67 (97)
T PRK14428 31 ARRLGVQGWVRNCRDGSVELEAQGSSDAVQALVEQLA 67 (97)
T ss_pred HHHcCCEEEEEECCCCEEEEEEEcCHHHHHHHHHHHh
Confidence 3445777777777788 99999998888877777765
No 75
>PRK14448 acylphosphatase; Provisional
Probab=35.44 E-value=57 Score=21.24 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=27.9
Q ss_pred CceecceEEEeecCce-eEEEEccccchHHHHHHHHH
Q 029273 2 NMVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 37 (196)
Q Consensus 2 A~~Agl~~~~~~~~~g-~~i~v~G~s~kl~~~l~~v~ 37 (196)
|...|++=.+....+| +.|.+.|-.+++..+++.+.
T Consensus 25 A~~lgl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~ 61 (90)
T PRK14448 25 ATKIGIKGYVKNRPDGSVEVVAVGSDAQIAAFRDWLQ 61 (90)
T ss_pred HHHhCCEEEEEECCCCCEEEEEEeCHHHHHHHHHHHH
Confidence 3445666677777788 99999999988888877774
No 76
>PRK14422 acylphosphatase; Provisional
Probab=34.94 E-value=69 Score=21.00 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=28.6
Q ss_pred CceecceEEEeecCce-eEEEEccccchHHHHHHHHHH
Q 029273 2 NMVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQ 38 (196)
Q Consensus 2 A~~Agl~~~~~~~~~g-~~i~v~G~s~kl~~~l~~v~~ 38 (196)
|.-.|+.=.+....+| +.|.+.|-.+++..++..+.+
T Consensus 29 A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 66 (93)
T PRK14422 29 ALELGLTGYAANLADGRVQVVAEGPRAACEKLLQLLRG 66 (93)
T ss_pred HHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHHh
Confidence 4445677777777888 999999988888777777765
No 77
>PF09432 THP2: Tho complex subunit THP2; InterPro: IPR018557 The THO complex plays a role in coupling transcription elongation to mRNA export. It is composed of subunits THP2, HPR1, THO2 and MFT1 [].
Probab=34.77 E-value=1.6e+02 Score=20.69 Aligned_cols=98 Identities=16% Similarity=0.251 Sum_probs=56.3
Q ss_pred EEEEccccchHHHHHHHHHHHhccCCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhcCCCCChhHHHhhCCCC
Q 029273 19 EVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHL 98 (196)
Q Consensus 19 ~i~v~G~s~kl~~~l~~v~~~l~~~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~~~~~~~~~~~~l~~i 98 (196)
.+.|..++ .|.-+..+++....+. .+-+.+|.++.+.+.+..+ ..| ...+ ++.|+..+.+..|.
T Consensus 28 ~~~vd~~~--pP~el~~iLe~y~~~~---~d~~~lr~~L~~YLD~IKm----~RA----kY~l-ENky~L~~tL~~Lt-- 91 (132)
T PF09432_consen 28 EFVVDDWN--PPKELQSILEKYNTPS---TDTEELRAQLDRYLDDIKM----ERA----KYSL-ENKYSLQDTLNQLT-- 91 (132)
T ss_pred eeeecCCC--CCHHHHHHHHHHcCCC---ccHHHHHHHHHHHHHHHHH----HHH----HHhh-hhHHHHHHHHHHHH--
Confidence 34444443 3444555555555544 4445566666666655432 122 2223 34566665555443
Q ss_pred CHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHH
Q 029273 99 EAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIED 138 (196)
Q Consensus 99 t~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~ 138 (196)
.++..|.+.| .++|.+..|| .+...+++++.+..
T Consensus 92 --kEVn~Wr~ew---d~iE~~mFGD-~pnSmkkMl~nves 125 (132)
T PF09432_consen 92 --KEVNYWRKEW---DNIEMLMFGD-GPNSMKKMLQNVES 125 (132)
T ss_pred --HHHHHHHHHH---HHHHHHHhcC-ChHHHHHHHHHHHH
Confidence 3566666665 5789999999 78888888877654
No 78
>PHA00490 terminal protein
Probab=34.03 E-value=2.2e+02 Score=21.89 Aligned_cols=56 Identities=16% Similarity=0.251 Sum_probs=37.5
Q ss_pred CCCChhHHHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHh
Q 029273 84 QTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVF 140 (196)
Q Consensus 84 ~~~~~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l 140 (196)
..|..+++++.|.+|..+|+-...-. +....++-+=.-+-+-+....++..+..-+
T Consensus 196 S~~~aDelve~LkkiPpDDFyElfl~-~~EISFE~FDSEg~~veasE~~l~ki~sYl 251 (266)
T PHA00490 196 SYWEADELVEKLKKIPPDDFYELFLI-YNEISFENFDSEGALVEASESILEKIRSYL 251 (266)
T ss_pred chhhHHHHHHHHhcCCchHHHHHHHH-HhhhhhhhcccccchHHhHHHHHHHHHHHH
Confidence 46788999999999999998776544 344555544444445555666666665554
No 79
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.92 E-value=84 Score=25.25 Aligned_cols=39 Identities=18% Similarity=0.205 Sum_probs=29.5
Q ss_pred CCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHH
Q 029273 95 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQY 135 (196)
Q Consensus 95 l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~ 135 (196)
++.++.+++++..+.. +.++.+.+.|+|+.+.+.++++.
T Consensus 215 LD~~~~e~l~~~v~~~--~~~i~leAsGGIt~~ni~~~a~t 253 (277)
T PRK05742 215 LDELSLDDMREAVRLT--AGRAKLEASGGINESTLRVIAET 253 (277)
T ss_pred ECCCCHHHHHHHHHHh--CCCCcEEEECCCCHHHHHHHHHc
Confidence 3678888888887643 23678999999999888877554
No 80
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=33.41 E-value=66 Score=20.75 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=25.6
Q ss_pred eecceEEEeecCce-eEEEEccccchHHHHHHHHHH
Q 029273 4 VAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQ 38 (196)
Q Consensus 4 ~Agl~~~~~~~~~g-~~i~v~G~s~kl~~~l~~v~~ 38 (196)
.-|+.=.+....+| +.+.+.|-.+.+..+++.+-.
T Consensus 29 ~~gl~G~V~N~~dg~V~i~~~G~~~~l~~f~~~l~~ 64 (91)
T PF00708_consen 29 KLGLTGWVRNLPDGSVEIEAEGEEEQLEEFIKWLKK 64 (91)
T ss_dssp HTT-EEEEEE-TTSEEEEEEEEEHHHHHHHHHHHHH
T ss_pred HhCCceEEEECCCCEEEEEEEeCHHHHHHHHHHHHh
Confidence 34666667777888 999999988888777777655
No 81
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=33.39 E-value=95 Score=23.19 Aligned_cols=65 Identities=9% Similarity=0.169 Sum_probs=49.1
Q ss_pred HHHHHHHHhhcCCCCC---hhHHHhhCC--CCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHH
Q 029273 72 LAMYYCSLILQDQTWP---WMEELEVLP--HLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIED 138 (196)
Q Consensus 72 ~a~~~~~~ll~~~~~~---~~~~~~~l~--~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~ 138 (196)
.++......+..+.|. .+|...++. =|+.+++.++.+. .+..+++.+.|.--+++.+++++.+.+
T Consensus 102 ~~~~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~--rp~~~evILTGR~~p~~Lie~AD~VTE 171 (178)
T PRK07414 102 ELWQYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEK--RPSHVDVILTGPEMPESLLAIADQITE 171 (178)
T ss_pred HHHHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHh--CCCCCEEEEECCCCCHHHHHhCCeeee
Confidence 3445555666666665 477766664 6899999999986 678899999999888888888777644
No 82
>PRK14441 acylphosphatase; Provisional
Probab=33.36 E-value=81 Score=20.65 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=27.9
Q ss_pred CceecceEEEeecCce-eEEEEccccchHHHHHHHHH
Q 029273 2 NMVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 37 (196)
Q Consensus 2 A~~Agl~~~~~~~~~g-~~i~v~G~s~kl~~~l~~v~ 37 (196)
|...|+.=.+....+| +.+.+.|-.+.+..+++.+-
T Consensus 28 A~~lgL~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 64 (93)
T PRK14441 28 ARRLGVEGWVRNLPDGRVEAEAEGERAAVGALVRWCH 64 (93)
T ss_pred HhhcCcEEEEEECCCCEEEEEEEECHHHHHHHHHHHh
Confidence 4556777777777888 99999998878777777663
No 83
>PRK14443 acylphosphatase; Provisional
Probab=32.96 E-value=71 Score=21.04 Aligned_cols=37 Identities=11% Similarity=0.268 Sum_probs=27.1
Q ss_pred CceecceEEEeecCce-eEEEEccccchHHHHHHHHHH
Q 029273 2 NMVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQ 38 (196)
Q Consensus 2 A~~Agl~~~~~~~~~g-~~i~v~G~s~kl~~~l~~v~~ 38 (196)
|...|+.=.+....+| +.|.+.|-.+.+..+++.+..
T Consensus 27 A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~~ 64 (93)
T PRK14443 27 AYKYDISGTVKNLDDGSVEIHAIAEEENLNKFIDAIKK 64 (93)
T ss_pred HHHcCCEEEEEECCCCEEEEEEECCHHHHHHHHHHHhc
Confidence 4445676677766677 999999988887777766644
No 84
>PRK14452 acylphosphatase; Provisional
Probab=32.96 E-value=64 Score=21.89 Aligned_cols=35 Identities=23% Similarity=0.154 Sum_probs=27.1
Q ss_pred CceecceEEEeecCce-eEEEEccccchHHHHHHHH
Q 029273 2 NMVAGLDYGINHTESG-FEVTVVGYNHKLRILLETI 36 (196)
Q Consensus 2 A~~Agl~~~~~~~~~g-~~i~v~G~s~kl~~~l~~v 36 (196)
|...|+.=.+....+| +.|.+.|-.+.+..+.+.+
T Consensus 43 A~~lgL~G~V~N~~dGsVeI~~qG~~~~ve~F~~~l 78 (107)
T PRK14452 43 ALDLGLSGWVRNLSDGSVEVQAEGPPLALSELRAWC 78 (107)
T ss_pred HHHhCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHH
Confidence 4456787788888888 9999999888877774444
No 85
>PRK14442 acylphosphatase; Provisional
Probab=32.89 E-value=73 Score=20.79 Aligned_cols=36 Identities=19% Similarity=0.126 Sum_probs=28.1
Q ss_pred CceecceEEEeecCce-eEEEEccccchHHHHHHHHH
Q 029273 2 NMVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 37 (196)
Q Consensus 2 A~~Agl~~~~~~~~~g-~~i~v~G~s~kl~~~l~~v~ 37 (196)
|..-|+.=.+....+| +.+.+.|-.+++..++..+.
T Consensus 27 A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 63 (91)
T PRK14442 27 ADRLELDGWVRNLDDGRVEVVWEGEEDRAKALERWLG 63 (91)
T ss_pred HHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHh
Confidence 4455777778888889 99999998888777776664
No 86
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=32.54 E-value=35 Score=23.34 Aligned_cols=66 Identities=14% Similarity=0.243 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhccC--CcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhcCCCCChhHHHhhCCCC
Q 029273 29 LRILLETIFQKIAQF--KVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHL 98 (196)
Q Consensus 29 l~~~l~~v~~~l~~~--~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~~~~~~~~~~~~l~~i 98 (196)
+...-..++..+.+. +++.+.|+..|.+.+-.+--. .|...+. ++...++.+.++..+++..|..+
T Consensus 43 l~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~v~---~P~~~~~-~L~~~f~~~~~Sl~qR~~iL~~l 110 (114)
T PF10193_consen 43 LSEYAEELLKALLHLQNKFDIENFEELRQNALVALVVA---APEKVAP-YLTEEFFSGDYSLQQRMSILSAL 110 (114)
T ss_dssp HHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHHHH---SGGGHHH--HHHHHTTS---THHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHHH---hhHHHHH-HHHHHHhcCCCCHHHHHHHHHHH
Confidence 333444444444443 578899999999988887644 5755544 44555666778888876655443
No 87
>PRK14438 acylphosphatase; Provisional
Probab=32.50 E-value=71 Score=20.81 Aligned_cols=36 Identities=8% Similarity=0.071 Sum_probs=27.6
Q ss_pred CceecceEEEeecCce-eEEEEccccchHHHHHHHHH
Q 029273 2 NMVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 37 (196)
Q Consensus 2 A~~Agl~~~~~~~~~g-~~i~v~G~s~kl~~~l~~v~ 37 (196)
|.-.|+.=.+....+| +.+.+.|-.+++..++..+.
T Consensus 26 A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 62 (91)
T PRK14438 26 AQRLNVSGWVKNLPNGSVQGCFEGEETDVAALIDWCH 62 (91)
T ss_pred HHHcCCEEEEEECCCCEEEEEEEECHHHHHHHHHHHh
Confidence 3445677777777888 89999998888877777764
No 88
>PRK14423 acylphosphatase; Provisional
Probab=32.50 E-value=73 Score=20.80 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=26.6
Q ss_pred CceecceEEEeecCce-eEEEEccccchHHHHHHHHH
Q 029273 2 NMVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 37 (196)
Q Consensus 2 A~~Agl~~~~~~~~~g-~~i~v~G~s~kl~~~l~~v~ 37 (196)
|..-|+.=.+....+| +.|.+.|-.+++..++..+-
T Consensus 28 A~~lgl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~ 64 (92)
T PRK14423 28 ARELGVDGWVRNLDDGRVEAVFEGPRDAVEAMVEWCH 64 (92)
T ss_pred HHHcCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHH
Confidence 3445676677777888 89999998877776666664
No 89
>PF06974 DUF1298: Protein of unknown function (DUF1298); InterPro: IPR009721 This entry represents the C terminus (approximately 170 residues) of a number of hypothetical plant proteins. O-acyltransferase WSD1 is a bifunctional wax ester synthase/diacylglycerol acyltransferase, which is involved in cuticular wax biosynthesis [].; GO: 0004144 diacylglycerol O-acyltransferase activity
Probab=31.80 E-value=37 Score=24.39 Aligned_cols=54 Identities=20% Similarity=0.193 Sum_probs=31.3
Q ss_pred eecceEEEeecCceeEEEEccccchHHHHHHHHHHHhccCC--cChhhHHHHHHHHHHHhhc
Q 029273 4 VAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFK--VKPDRFSVIKEMVTKEYHN 63 (196)
Q Consensus 4 ~Agl~~~~~~~~~g~~i~v~G~s~kl~~~l~~v~~~l~~~~--~~~~~F~~~k~~~~~~l~n 63 (196)
+.++.........|+.|++..|.+++.. ..+.... +|+++|...-+.-+.++++
T Consensus 97 v~~i~~~~~~~~~~L~itv~SY~g~l~~------gi~ad~~~vpD~~~l~~~~~~~l~eL~~ 152 (153)
T PF06974_consen 97 VEYIYPSPLGDGQALNITVFSYAGKLDF------GIVADRDAVPDPQRLADCFEEALEELKE 152 (153)
T ss_pred eEEEEeeeecCCcceEEEEEEeCCEEEE------EEEEccccCCCHHHHHHHHHHHHHHHHc
Confidence 3444444445566888888888887621 1122222 5666766666666666553
No 90
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=30.35 E-value=97 Score=19.70 Aligned_cols=40 Identities=15% Similarity=0.005 Sum_probs=29.5
Q ss_pred cChHHHHHHHHHHhhcC--CCCChhHHHhhCCCCCHHHHHHH
Q 029273 67 LQPFQLAMYYCSLILQD--QTWPWMEELEVLPHLEAEDLAKF 106 (196)
Q Consensus 67 ~~P~~~a~~~~~~ll~~--~~~~~~~~~~~l~~it~~dl~~f 106 (196)
.+...++...+..-... ..-+.+.+.++|..+...|+.+-
T Consensus 41 ~~~~eq~~~mL~~W~~r~g~~at~~~L~~AL~~i~r~Di~~~ 82 (84)
T cd08317 41 NSLAQQAQAMLKLWLEREGKKATGNSLEKALKKIGRDDIVEK 82 (84)
T ss_pred CCHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHcChHHHHHH
Confidence 35567788777666653 34667789999999999998754
No 91
>COG2442 Uncharacterized conserved protein [Function unknown]
Probab=29.79 E-value=80 Score=20.16 Aligned_cols=27 Identities=22% Similarity=0.144 Sum_probs=22.7
Q ss_pred CCCChhHHHhhCCCCCHHHHHHHHHHh
Q 029273 84 QTWPWMEELEVLPHLEAEDLAKFVPMM 110 (196)
Q Consensus 84 ~~~~~~~~~~~l~~it~~dl~~f~~~~ 110 (196)
..++.+++++....+|++|+.+..+-.
T Consensus 42 ~G~s~eeil~dyp~Lt~~dI~aal~ya 68 (79)
T COG2442 42 AGESIEEILADYPDLTLEDIRAALRYA 68 (79)
T ss_pred CCCCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 458899999999999999998877643
No 92
>PF10978 DUF2785: Protein of unknown function (DUF2785); InterPro: IPR021247 Some members in this family are annotated as hypothetical membrane spanning proteins however this cannot be confirmed. The family has no known function.
Probab=29.36 E-value=2.3e+02 Score=20.84 Aligned_cols=78 Identities=15% Similarity=0.086 Sum_probs=52.8
Q ss_pred ceeEEEEccccchHHHHHHHHHHHhccCCcChhhHHHHHHHHHHHhhcc----cccChHHHHHHHHHHhhcCCCCChhHH
Q 029273 16 SGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNN----KFLQPFQLAMYYCSLILQDQTWPWMEE 91 (196)
Q Consensus 16 ~g~~i~v~G~s~kl~~~l~~v~~~l~~~~~~~~~F~~~k~~~~~~l~n~----~~~~P~~~a~~~~~~ll~~~~~~~~~~ 91 (196)
.|+ +.-.||.+.+...-+.+.+.+.+|.++......+-.-+.+.++.. ...++..+|......+. .+..+.++.
T Consensus 59 RGf-v~~~GWaHa~AH~aD~l~el~~~p~~~~~~~~~lL~~i~~~~~~~~~~~~~~EdeRLa~~~~~~l~-~~~l~~~~~ 136 (175)
T PF10978_consen 59 RGF-VEEKGWAHAFAHGADLLDELVQHPELDRADKIELLAAILEKYKRLSTPFIDGEDERLATALIELLN-RNKLYQEEL 136 (175)
T ss_pred ccC-CccCcHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcCCCcceeCCChhHHHHHHHHHHH-cCCCCHHHH
Confidence 344 366899999999999999999999999877777766666666652 23566666665554443 444444444
Q ss_pred HhhC
Q 029273 92 LEVL 95 (196)
Q Consensus 92 ~~~l 95 (196)
..-|
T Consensus 137 ~~wl 140 (175)
T PF10978_consen 137 LSWL 140 (175)
T ss_pred HHHH
Confidence 4333
No 93
>PRK14421 acylphosphatase; Provisional
Probab=29.20 E-value=82 Score=21.01 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=27.7
Q ss_pred CceecceEEEeecCce-eEEEEccccchHHHHHHHHH
Q 029273 2 NMVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 37 (196)
Q Consensus 2 A~~Agl~~~~~~~~~g-~~i~v~G~s~kl~~~l~~v~ 37 (196)
|..-|+.=.+....+| +.+.+.|-.+++..++..+.
T Consensus 27 A~~lgL~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~ 63 (99)
T PRK14421 27 AEALGLEGWVRNRRDGSVEALFAGPADAVAEMIARCR 63 (99)
T ss_pred HHHhCCEEEEEECCCCEEEEEEeCCHHHHHHHHHHHH
Confidence 3445677677777888 99999998888877777664
No 94
>PRK14450 acylphosphatase; Provisional
Probab=29.07 E-value=88 Score=20.33 Aligned_cols=36 Identities=22% Similarity=0.180 Sum_probs=27.0
Q ss_pred CceecceEEEeecCce--eEEEEccccchHHHHHHHHH
Q 029273 2 NMVAGLDYGINHTESG--FEVTVVGYNHKLRILLETIF 37 (196)
Q Consensus 2 A~~Agl~~~~~~~~~g--~~i~v~G~s~kl~~~l~~v~ 37 (196)
|...|+.=.+....+| +.+.+.|-.+.+..++..+-
T Consensus 25 A~~~~l~G~V~N~~dG~~Vei~~~G~~~~v~~f~~~l~ 62 (91)
T PRK14450 25 ATRLGLCGYAKNLANGNEVEVVAEGDKDSLLEFLDLLR 62 (91)
T ss_pred HHHcCCEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHh
Confidence 3445666667777788 89999998888888777664
No 95
>PRK14426 acylphosphatase; Provisional
Probab=28.67 E-value=88 Score=20.43 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=25.9
Q ss_pred ceecceEEEeecCce-eEEEEccccchHHHHHHHHHH
Q 029273 3 MVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQ 38 (196)
Q Consensus 3 ~~Agl~~~~~~~~~g-~~i~v~G~s~kl~~~l~~v~~ 38 (196)
..-|+.=.+....+| +.+.+.|-.+++..++..+-+
T Consensus 28 ~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 64 (92)
T PRK14426 28 LKLGLTGYAKNLDDGSVEVVACGEEEQVEKLMEWLKE 64 (92)
T ss_pred HHhCCEEEEEECCCCcEEEEEEeCHHHHHHHHHHHhc
Confidence 344666666666676 999999988888777776643
No 96
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=28.45 E-value=36 Score=20.94 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=13.4
Q ss_pred eecCCChHHHHHHHHH
Q 029273 120 IAGNIESNEAGSIIQY 135 (196)
Q Consensus 120 v~GNi~~~~a~~~~~~ 135 (196)
.+|+|++++|.+++..
T Consensus 2 ~~g~isr~~Ae~~L~~ 17 (77)
T PF00017_consen 2 FHGFISRQEAERLLMQ 17 (77)
T ss_dssp BEESSHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHh
Confidence 4899999999987655
No 97
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=28.16 E-value=1.1e+02 Score=24.34 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHH
Q 029273 96 PHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQ 134 (196)
Q Consensus 96 ~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~ 134 (196)
..++.++++...+.. . .++-+.+.|+|+.+.+..+++
T Consensus 209 d~~~~e~l~~~~~~~-~-~~ipi~AiGGI~~~ni~~~a~ 245 (268)
T cd01572 209 DNMSPEELREAVALL-K-GRVLLEASGGITLENIRAYAE 245 (268)
T ss_pred CCcCHHHHHHHHHHc-C-CCCcEEEECCCCHHHHHHHHH
Confidence 556777777776543 1 156778888888877777654
No 98
>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain). Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.
Probab=28.15 E-value=70 Score=20.02 Aligned_cols=26 Identities=8% Similarity=0.321 Sum_probs=19.8
Q ss_pred EeecCceeEEEEccccchHHHHHHHH
Q 029273 11 INHTESGFEVTVVGYNHKLRILLETI 36 (196)
Q Consensus 11 ~~~~~~g~~i~v~G~s~kl~~~l~~v 36 (196)
+..+.+.+.+.+.|-.+++..+++.+
T Consensus 31 vd~~~~~~iie~tG~~~kid~fi~~l 56 (75)
T PF10369_consen 31 VDVSPDSIIIELTGTPEKIDAFIKLL 56 (75)
T ss_dssp EEEETTEEEEEEEE-HHHHHHHHHHS
T ss_pred EEECCCEEEEEEcCCHHHHHHHHHHh
Confidence 34567889999999999987777654
No 99
>PF09568 RE_MjaI: MjaI restriction endonuclease; InterPro: IPR019068 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the MjaI (recognises CTAG but cleavage site unknown) restriction endonuclease. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=27.73 E-value=49 Score=24.49 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=23.6
Q ss_pred hhHHHhhCCCCCHHHHHHHHHHhhhhhheee
Q 029273 88 WMEELEVLPHLEAEDLAKFVPMMLSRTFLEC 118 (196)
Q Consensus 88 ~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~ 118 (196)
..++.+++++||.+|++.|++++.=.-.+.+
T Consensus 60 i~e~~~a~~~it~ed~~~wv~dLvi~kTf~G 90 (170)
T PF09568_consen 60 ITEVKEALNKITEEDCINWVKDLVINKTFDG 90 (170)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHheeecccch
Confidence 3467788999999999999999764333433
No 100
>smart00311 PWI PWI, domain in splicing factors.
Probab=27.36 E-value=1.6e+02 Score=18.25 Aligned_cols=62 Identities=16% Similarity=0.083 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhhccc-ccChHHHHHHHHHHhhcCCCCChhHHHhhCCCCCHHHHHHHHHHhhhhh
Q 029273 50 FSVIKEMVTKEYHNNK-FLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRT 114 (196)
Q Consensus 50 F~~~k~~~~~~l~n~~-~~~P~~~a~~~~~~ll~~~~~~~~~~~~~l~~it~~dl~~f~~~~~~~~ 114 (196)
.+.+|.-+.+.+.... .+++ ...++.-..+..+ -+++++...|+...++|-..|+.++++..
T Consensus 6 ~~~lk~WI~~kv~e~LG~~d~--~vvd~i~~~l~~~-~~~~~l~~~L~~~~f~da~~Fv~~Lw~~l 68 (74)
T smart00311 6 LDEIKPWITKKVIEFLGFEED--TLVEFILSQIRQH-KGPQAKLLQINLTGFEDAEEFVDKLWRLL 68 (74)
T ss_pred HHHHHHHHHHHHHHHHCCChH--HHHHHHHHHHHhC-CChHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 3444444444444431 1233 3334444444433 37778888888888888999999887653
No 101
>PF03220 Tombus_P19: Tombusvirus P19 core protein; InterPro: IPR004905 This family represents the Tombusvirus P19 core protein.; GO: 0019012 virion; PDB: 1RPU_A 1R9F_A.
Probab=26.61 E-value=1.9e+02 Score=20.65 Aligned_cols=32 Identities=31% Similarity=0.510 Sum_probs=24.4
Q ss_pred ecceEEEeecCceeEEEEccccchHHHHHHHHHH
Q 029273 5 AGLDYGINHTESGFEVTVVGYNHKLRILLETIFQ 38 (196)
Q Consensus 5 Agl~~~~~~~~~g~~i~v~G~s~kl~~~l~~v~~ 38 (196)
.|..|++.+ .|+.|+++|=|..|..+++..+.
T Consensus 108 igCTYsIRf--RG~~~TlSGGSrtLqrl~eMAiR 139 (170)
T PF03220_consen 108 IGCTYSIRF--RGVSVTLSGGSRTLQRLIEMAIR 139 (170)
T ss_dssp -EEEEEEEE--TTEEEEEEEEGGGHHHHHHHHHH
T ss_pred cceeEEEEE--eeeEEEecCChHHHHHHHHHHHH
Confidence 366777765 79999999999998888775543
No 102
>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease. Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.
Probab=26.55 E-value=45 Score=24.33 Aligned_cols=62 Identities=18% Similarity=0.096 Sum_probs=35.9
Q ss_pred HHHHHHHhhcCCCCChhHHHhhCCCCCHHHHHHH------HHHhhhhhheeeEeecCCChHHHHHHHH
Q 029273 73 AMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKF------VPMMLSRTFLECYIAGNIESNEAGSIIQ 134 (196)
Q Consensus 73 a~~~~~~ll~~~~~~~~~~~~~l~~it~~dl~~f------~~~~~~~~~~~~lv~GNi~~~~a~~~~~ 134 (196)
|...+..++.++.|+..++-+.-..++.++-... ...++.+.+--+.-.||++..-....++
T Consensus 8 alHaLNnLlQ~~~ft~~dL~~Ia~~Ld~~E~~~~~~~~~~~~~~~~~~s~n~~~~GnysinVL~~AL~ 75 (157)
T PF02099_consen 8 ALHALNNLLQGPYFTAVDLDEIAQELDEEERSLMAEDSWTPLSFLFNPSRNVDGTGNYSINVLMAALQ 75 (157)
T ss_dssp HHHHHHHHCTSS-S-HHHHHHHHHHHHHHHHHHHHCTSHHHHHHHTSTSSTCSTTSTCECHHHHHHHH
T ss_pred HHHHHHHHhhhhhcCHHHHHHHHHHhChhhhhhhhccCccchhhccccccCccccCCcCHHHHHHHHH
Confidence 4567888899999998876555444444332211 1233344455566679999866665544
No 103
>PRK14432 acylphosphatase; Provisional
Probab=26.42 E-value=1.1e+02 Score=19.97 Aligned_cols=37 Identities=8% Similarity=0.106 Sum_probs=28.0
Q ss_pred CceecceEEEeecCce-eEEEEc-cccchHHHHHHHHHH
Q 029273 2 NMVAGLDYGINHTESG-FEVTVV-GYNHKLRILLETIFQ 38 (196)
Q Consensus 2 A~~Agl~~~~~~~~~g-~~i~v~-G~s~kl~~~l~~v~~ 38 (196)
|..-|+.=.+....+| +.+.+. |-.+++..++..+.+
T Consensus 25 A~~lgl~G~V~N~~dG~Vei~~~~G~~~~v~~f~~~l~~ 63 (93)
T PRK14432 25 ANNMKLKGFVKNLNDGRVEIVAFFNTKEQMKKFEKLLKN 63 (93)
T ss_pred HHHhCCEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHh
Confidence 3445676677777788 999997 999888888776654
No 104
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=26.39 E-value=1.4e+02 Score=23.79 Aligned_cols=39 Identities=13% Similarity=0.166 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHH
Q 029273 96 PHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQ 134 (196)
Q Consensus 96 ~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~ 134 (196)
..++.++++...+..-...++.+.+.|+|+.+.+.++++
T Consensus 208 d~~~~e~l~~~v~~i~~~~~i~i~asGGIt~~ni~~~a~ 246 (269)
T cd01568 208 DNMSPEELKEAVKLLKGLPRVLLEASGGITLENIRAYAE 246 (269)
T ss_pred CCCCHHHHHHHHHHhccCCCeEEEEECCCCHHHHHHHHH
Confidence 345566666555432211255677777777777766644
No 105
>cd08803 Death_ank3 Death domain of Ankyrin-3. Death Domain (DD) of the human protein ankyrin-3 (ANK-3) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-3, also called anykyrin-G (for general or giant), is found in neurons and at least one splice variant has been shown to be essential for propagation of action potentials as a binding partner to neurofascin and voltage-gated sodium channels. It is required for maintaining axo-dendritic polarity, and may be a genetic risk factor associated with bipolar disorder. ANK-3 may also play roles in other cell types. Mutations affecting ANK-3 pathways for Na channel localization are associated with Brugada syndrome, a potentially fata arrythmia. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=26.33 E-value=1.1e+02 Score=19.65 Aligned_cols=40 Identities=8% Similarity=-0.005 Sum_probs=30.1
Q ss_pred cChHHHHHHHHHHhhcC--CCCChhHHHhhCCCCCHHHHHHH
Q 029273 67 LQPFQLAMYYCSLILQD--QTWPWMEELEVLPHLEAEDLAKF 106 (196)
Q Consensus 67 ~~P~~~a~~~~~~ll~~--~~~~~~~~~~~l~~it~~dl~~f 106 (196)
.+|..++...+...... ..-+.+.+..+|..|.+.|+...
T Consensus 41 ~~~~~q~~~lL~~W~~r~g~~At~~~L~~aL~~i~R~DIv~~ 82 (84)
T cd08803 41 NSLIAQSFMLLKKWVTRDGKNATTDALTSVLTKINRIDIVTL 82 (84)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHCCcHHHHHh
Confidence 46778888888776664 24456678999999999998764
No 106
>PRK14433 acylphosphatase; Provisional
Probab=26.00 E-value=1.1e+02 Score=19.75 Aligned_cols=36 Identities=25% Similarity=0.200 Sum_probs=26.3
Q ss_pred CceecceEEEeecCce-eEEEEccccchHHHHHHHHH
Q 029273 2 NMVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 37 (196)
Q Consensus 2 A~~Agl~~~~~~~~~g-~~i~v~G~s~kl~~~l~~v~ 37 (196)
|..-|++=.+....+| +++.+.|=.+.+..+++.+.
T Consensus 24 A~~~~l~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~ 60 (87)
T PRK14433 24 ARELGLSGYAENLSDGRVEVVAEGPKEALERLLHWLR 60 (87)
T ss_pred HHHcCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHh
Confidence 3344666667777788 99999998888777766663
No 107
>PF14659 Phage_int_SAM_3: Phage integrase, N-terminal SAM-like domain; PDB: 2KD1_A 2KOB_A 2KHQ_A 3LYS_E 2KIW_A 2KKP_A.
Probab=25.30 E-value=48 Score=18.82 Aligned_cols=19 Identities=16% Similarity=0.485 Sum_probs=12.5
Q ss_pred hhCCCCCHHHHHHHHHHhh
Q 029273 93 EVLPHLEAEDLAKFVPMML 111 (196)
Q Consensus 93 ~~l~~it~~dl~~f~~~~~ 111 (196)
-.|++||..++++|+.+++
T Consensus 40 ~~i~~It~~~i~~~~~~l~ 58 (58)
T PF14659_consen 40 KKIKDITPRDIQNFINELL 58 (58)
T ss_dssp SBGGG--HHHHHHHHHHH-
T ss_pred CcHHHCCHHHHHHHHHHcC
Confidence 3467888999999988763
No 108
>PF08494 DEAD_assoc: DEAD/H associated; InterPro: IPR013701 This domain is found in ATP-dependent helicases as well as a number of hypothetical proteins together with the helicase conserved C-terminal domain (IPR011545 from INTERPRO) and the IPR001650 from INTERPRO domain. ; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
Probab=25.21 E-value=1.7e+02 Score=21.81 Aligned_cols=22 Identities=14% Similarity=0.215 Sum_probs=19.0
Q ss_pred eecceEEEeecCceeEEEEccc
Q 029273 4 VAGLDYGINHTESGFEVTVVGY 25 (196)
Q Consensus 4 ~Agl~~~~~~~~~g~~i~v~G~ 25 (196)
..|.++++..+++|+.|....-
T Consensus 46 ~~~~~v~~~~~dygi~l~~~~~ 67 (187)
T PF08494_consen 46 RYGLSVSVSVDDYGIVLSLPEP 67 (187)
T ss_pred hcCCCeEEEEcCCEEEEEcCCC
Confidence 4577899999999999999877
No 109
>COG3411 Ferredoxin [Energy production and conversion]
Probab=24.46 E-value=1.1e+02 Score=18.80 Aligned_cols=20 Identities=20% Similarity=0.209 Sum_probs=17.0
Q ss_pred eeEeecCCChHHHHHHHHHH
Q 029273 117 ECYIAGNIESNEAGSIIQYI 136 (196)
Q Consensus 117 ~~lv~GNi~~~~a~~~~~~~ 136 (196)
+..-++++++++|.++++..
T Consensus 25 egvWY~~V~p~~a~rIv~~h 44 (64)
T COG3411 25 EGVWYTRVDPEDARRIVQSH 44 (64)
T ss_pred CCeeEeccCHHHHHHHHHHH
Confidence 44678999999999998875
No 110
>PRK14437 acylphosphatase; Provisional
Probab=24.35 E-value=1.1e+02 Score=20.77 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=27.5
Q ss_pred CceecceEEEeecCce-eEEEEccccchHHHHHHHHH
Q 029273 2 NMVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 37 (196)
Q Consensus 2 A~~Agl~~~~~~~~~g-~~i~v~G~s~kl~~~l~~v~ 37 (196)
|.--|+.=.+....+| +.|.+.|=.+.+..++..+-
T Consensus 46 A~~lgL~G~V~N~~dG~Vei~~qG~~~~ie~f~~~L~ 82 (109)
T PRK14437 46 AEELQLTGWVKNLSHGDVELVACGERDSIMILTEWLW 82 (109)
T ss_pred HHHhCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHH
Confidence 4445777777777888 99999998887777766664
No 111
>PF11693 DUF2990: Protein of unknown function (DUF2990); InterPro: IPR021706 This family of proteins represents a fungal protein with unknown function.
Probab=24.11 E-value=79 Score=19.21 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=18.8
Q ss_pred EEccccchHHHHHHHHHHHhccC
Q 029273 21 TVVGYNHKLRILLETIFQKIAQF 43 (196)
Q Consensus 21 ~v~G~s~kl~~~l~~v~~~l~~~ 43 (196)
.+.+|++.+.+++.+|.+.|-..
T Consensus 17 ~~Yd~S~dlaeFy~rVSk~I~~~ 39 (64)
T PF11693_consen 17 NVYDYSDDLAEFYGRVSKYIESA 39 (64)
T ss_pred ccccCCHHHHHHHHHHHHHHHHH
Confidence 46889999999999988877653
No 112
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=24.05 E-value=1.7e+02 Score=23.39 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHHhhhh-hheeeEeecCCChHHHHHHHHH
Q 029273 96 PHLEAEDLAKFVPMMLSR-TFLECYIAGNIESNEAGSIIQY 135 (196)
Q Consensus 96 ~~it~~dl~~f~~~~~~~-~~~~~lv~GNi~~~~a~~~~~~ 135 (196)
..+..++++...+..-.. .++.+.+.|+|+.+.+.++.+.
T Consensus 210 d~~~p~~l~~~~~~~~~~~~~i~i~AsGGI~~~ni~~~~~~ 250 (272)
T cd01573 210 DKFSPEELAELVPKLRSLAPPVLLAAAGGINIENAAAYAAA 250 (272)
T ss_pred CCCCHHHHHHHHHHHhccCCCceEEEECCCCHHHHHHHHHc
Confidence 345666666666543222 2577888888888777766443
No 113
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=23.58 E-value=1.6e+02 Score=23.38 Aligned_cols=38 Identities=11% Similarity=0.163 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHH
Q 029273 96 PHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQY 135 (196)
Q Consensus 96 ~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~ 135 (196)
..++.++++...+..- .++.+.+.|+|+.+.+..+++.
T Consensus 205 d~~~~e~lk~~v~~~~--~~ipi~AsGGI~~~ni~~~a~~ 242 (265)
T TIGR00078 205 DNMKPEEIKEAVQLLK--GRVLLEASGGITLDNLEEYAET 242 (265)
T ss_pred CCCCHHHHHHHHHHhc--CCCcEEEECCCCHHHHHHHHHc
Confidence 5567777777766531 1266777888888877776543
No 114
>cd08305 Pyrin Pyrin: a protein-protein interaction domain. The Pyrin domain (or PYD), also called DAPIN or PAAD, is a subfamily of the Death Domain (DD) superfamily and it functions in several signaling pathways. The Pyrin domain is found at the N-terminus of a variety of proteins and serves as a linker that recruits other domains into signaling complexes. Pyrin-containing proteins include NALPs, ASC (Apoptosis-associated speck-like protein containing a CARD), and the interferon-inducible p200 (IFI-200) family of proteins which includes the human IFI-16, myeloid cell nuclear differentiation antigen (MNDA) and absent in melanoma (AIM) 2. NALPs are members of the NBS-LRR family of proteins possessing a tripartite domain structure including a C-terminal LRR (leucine-rich repeats), a central nucleotide-binding site (NBS) domain or NACHT (for neuronal apoptosis inhibitor protein, CIITA, HET-E and TP1), and an N-terminal protein-protein interaction domain, which is a Pyrin domain in the case
Probab=23.43 E-value=1.5e+02 Score=18.43 Aligned_cols=60 Identities=8% Similarity=0.181 Sum_probs=34.9
Q ss_pred cChhhHHHHHHHHHHHhhccc-ccChHHHHHHHHHHhhc--CCCCChhHHHhhCCCCCHHHHHH
Q 029273 45 VKPDRFSVIKEMVTKEYHNNK-FLQPFQLAMYYCSLILQ--DQTWPWMEELEVLPHLEAEDLAK 105 (196)
Q Consensus 45 ~~~~~F~~~k~~~~~~l~n~~-~~~P~~~a~~~~~~ll~--~~~~~~~~~~~~l~~it~~dl~~ 105 (196)
+++.+|...|..+....+... ....+. ..+....+.. +..+..+-.+..++.+.+.|+..
T Consensus 8 L~~~efk~FK~~L~~~~~~~~~~~~~~a-~~~la~lL~~~y~~~~a~~~t~~i~~~m~~~dlae 70 (73)
T cd08305 8 ITDEELKRFKSLLANDLFLETKAQLEYT-RIQIADLMEQKFGAVSALDKLINIFEDMPLRSLAN 70 (73)
T ss_pred cCHHHHHHHHHHHHhcCCCCCccccccc-HHHHHHHHHHHcChhHHHHHHHHHHHHcChHHHHH
Confidence 577999999999988643322 112222 3333333332 23344555677788888877654
No 115
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=23.04 E-value=82 Score=24.09 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHhhhhhheeeEeecCCC
Q 029273 97 HLEAEDLAKFVPMMLSRTFLECYIAGNIE 125 (196)
Q Consensus 97 ~it~~dl~~f~~~~~~~~~~~~lv~GNi~ 125 (196)
++|++++++..+..- ...++++|+|++.
T Consensus 69 EL~~~ei~~i~~~~~-~~~~Ev~v~G~~~ 96 (233)
T PF01136_consen 69 ELSLEEIKEIAENSP-GVPLEVIVHGNLP 96 (233)
T ss_pred cCCHHHHHHHHHhCC-CCeEEEEEeCCcc
Confidence 568999998877543 7789999999974
No 116
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=23.03 E-value=85 Score=18.31 Aligned_cols=24 Identities=25% Similarity=0.083 Sum_probs=16.7
Q ss_pred CCCCChhHHHhhCCCCCHHHHHHH
Q 029273 83 DQTWPWMEELEVLPHLEAEDLAKF 106 (196)
Q Consensus 83 ~~~~~~~~~~~~l~~it~~dl~~f 106 (196)
..-+++++.++.-.++|.+++.+-
T Consensus 29 ~~G~s~eeI~~~yp~Lt~~~i~aA 52 (56)
T PF04255_consen 29 AAGESPEEIAEDYPSLTLEDIRAA 52 (56)
T ss_dssp HTT--HHHHHHHSTT--HHHHHHH
T ss_pred HcCCCHHHHHHHCCCCCHHHHHHH
Confidence 456999999999999999998764
No 117
>PF14178 YppF: YppF-like protein
Probab=22.89 E-value=1.9e+02 Score=17.48 Aligned_cols=36 Identities=22% Similarity=0.367 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHH
Q 029273 96 PHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDV 139 (196)
Q Consensus 96 ~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~ 139 (196)
+..++.+|.+|.++.+ +.|.|+..+-+.++..+...
T Consensus 17 ~p~~~NeLLDFar~~Y--------i~gei~i~eYR~lvreLE~~ 52 (60)
T PF14178_consen 17 EPEDMNELLDFARKLY--------IQGEISINEYRNLVRELEAN 52 (60)
T ss_pred CcccHHHHHHHHHHHH--------HhCcccHHHHHHHHHHHHHh
Confidence 4567888999988754 57999999999998887654
No 118
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=22.60 E-value=1e+02 Score=24.88 Aligned_cols=47 Identities=13% Similarity=0.127 Sum_probs=35.1
Q ss_pred hhHHHhhCCCCCHHHHHHHHHHhhhhhheee-EeecCCChHHHHHHHHHH
Q 029273 88 WMEELEVLPHLEAEDLAKFVPMMLSRTFLEC-YIAGNIESNEAGSIIQYI 136 (196)
Q Consensus 88 ~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~-lv~GNi~~~~a~~~~~~~ 136 (196)
.+|---||+.||+..+++-...+-+....++ +|.= +.+||.++.+.+
T Consensus 159 MDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTH--DidEA~kLadri 206 (309)
T COG1125 159 MDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTH--DIDEALKLADRI 206 (309)
T ss_pred ecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEec--CHHHHHhhhceE
Confidence 4455578899999999999999887777655 5554 455888887654
No 119
>KOG4107 consensus MP1 adaptor interacting protein P14 [Signal transduction mechanisms]
Probab=22.56 E-value=1.7e+02 Score=19.72 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=29.4
Q ss_pred CceecceEEEeecCceeEEEEccccchHHHHHHHHHHHh
Q 029273 2 NMVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKI 40 (196)
Q Consensus 2 A~~Agl~~~~~~~~~g~~i~v~G~s~kl~~~l~~v~~~l 40 (196)
|...|.+-++-.+.+|.-+--+||-||-..+-..++..+
T Consensus 14 aNTgGV~~tlLln~EG~LLAYsGygdkdarvtaAiasni 52 (125)
T KOG4107|consen 14 ANTGGVDGTLLLNKEGLLLAYSGYGDKDARVTAAIASNI 52 (125)
T ss_pred cccCCccceEEEcCCCcEEEecccCcchhHHHHHHHHHH
Confidence 445677777888889999999999999766655555443
No 120
>PRK14434 acylphosphatase; Provisional
Probab=22.48 E-value=1.6e+02 Score=19.29 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=25.2
Q ss_pred eec-ceEEEeecCce-eEEEEcccc-chHHHHHHHHHH
Q 029273 4 VAG-LDYGINHTESG-FEVTVVGYN-HKLRILLETIFQ 38 (196)
Q Consensus 4 ~Ag-l~~~~~~~~~g-~~i~v~G~s-~kl~~~l~~v~~ 38 (196)
.-| +.=.+....+| +.|.+.|-. +.+..++..+.+
T Consensus 27 ~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~l~~ 64 (92)
T PRK14434 27 EIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQEIRK 64 (92)
T ss_pred HcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHHHhc
Confidence 345 66667777888 999999976 577776666643
No 121
>PRK04387 hypothetical protein; Provisional
Probab=22.47 E-value=1.4e+02 Score=19.69 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=20.9
Q ss_pred CCCChhHHHhhC-----------CCCCHHHHHHHHHHhhh
Q 029273 84 QTWPWMEELEVL-----------PHLEAEDLAKFVPMMLS 112 (196)
Q Consensus 84 ~~~~~~~~~~~l-----------~~it~~dl~~f~~~~~~ 112 (196)
..|+.+|+++.+ ..+..++|.+-+++|-.
T Consensus 9 ~dWsteEii~Vi~F~~~VE~aYE~gv~re~ll~~Y~~FK~ 48 (90)
T PRK04387 9 LDWSTEEMISVLHFFNAVEKAYEKGVDAEELLDAYRRFKE 48 (90)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 469998876654 46778888777777653
No 122
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Probab=22.18 E-value=63 Score=20.49 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=13.9
Q ss_pred eecCCChHHHHHHHHH
Q 029273 120 IAGNIESNEAGSIIQY 135 (196)
Q Consensus 120 v~GNi~~~~a~~~~~~ 135 (196)
.+|+|++++|..++..
T Consensus 3 ~~g~i~r~~Ae~~L~~ 18 (94)
T cd00173 3 YHGPISREEAEELLKK 18 (94)
T ss_pred cccCCCHHHHHHHHhc
Confidence 5899999999988765
No 123
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=21.86 E-value=1.9e+02 Score=23.70 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHH
Q 029273 99 EAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQY 135 (196)
Q Consensus 99 t~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~ 135 (196)
+.+++++.+... . .+..+-+.|+|+.+.+.+++..
T Consensus 248 ~~e~l~~av~~~-~-~~~~lEaSGGIt~~ni~~yA~t 282 (308)
T PLN02716 248 DVSMLKEAVELI-N-GRFETEASGNVTLDTVHKIGQT 282 (308)
T ss_pred CHHHHHHHHHhh-C-CCceEEEECCCCHHHHHHHHHc
Confidence 888888887643 2 3456888999999998888664
No 124
>PF10231 DUF2315: Uncharacterised conserved protein (DUF2315); InterPro: IPR018796 This entry consists of small conserved proteins found from worms to humans. Their function is not known.
Probab=21.62 E-value=2.1e+02 Score=20.09 Aligned_cols=19 Identities=21% Similarity=0.480 Sum_probs=16.2
Q ss_pred CCCCCHHHHHHHHHHhhhh
Q 029273 95 LPHLEAEDLAKFVPMMLSR 113 (196)
Q Consensus 95 l~~it~~dl~~f~~~~~~~ 113 (196)
...++.+++..|++.|+..
T Consensus 74 ~~~l~a~~mseFYk~FL~~ 92 (126)
T PF10231_consen 74 KQELSADEMSEFYKEFLDK 92 (126)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999965
No 125
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=21.08 E-value=2.1e+02 Score=20.86 Aligned_cols=64 Identities=11% Similarity=0.118 Sum_probs=47.3
Q ss_pred HHHHHHHhhcCCCCC---hhHHHhh--CCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHH
Q 029273 73 AMYYCSLILQDQTWP---WMEELEV--LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIED 138 (196)
Q Consensus 73 a~~~~~~ll~~~~~~---~~~~~~~--l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~ 138 (196)
++......+..+.|. .+|..-+ +.-++.+++.++.++ .+.++++.+.|.--+++.+++++.+.+
T Consensus 83 ~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~--rp~~~evIlTGr~~p~~l~e~AD~VTE 151 (159)
T cd00561 83 GWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKA--KPEDLELVLTGRNAPKELIEAADLVTE 151 (159)
T ss_pred HHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHc--CCCCCEEEEECCCCCHHHHHhCceeee
Confidence 444555555555565 4676554 567899999999886 667899999999999998888777644
No 126
>PRK14439 acylphosphatase; Provisional
Probab=20.98 E-value=1.4e+02 Score=21.92 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=27.1
Q ss_pred CceecceEEEeecCce-eEEEEccccchHHHHHHHHHH
Q 029273 2 NMVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQ 38 (196)
Q Consensus 2 A~~Agl~~~~~~~~~g-~~i~v~G~s~kl~~~l~~v~~ 38 (196)
|..-|+.=.+....+| +.|.+.|=.+++..+++.+.+
T Consensus 98 A~qlGLtGwVrNl~DGsVEI~aQG~ee~Ie~Fi~~L~~ 135 (163)
T PRK14439 98 AKKLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWLKS 135 (163)
T ss_pred HHHhCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhh
Confidence 3444666667766777 999999988888777776654
No 127
>PRK14135 recX recombination regulator RecX; Provisional
Probab=20.86 E-value=4e+02 Score=20.83 Aligned_cols=50 Identities=10% Similarity=0.175 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhcCCCCChhHHHhhCCCC
Q 029273 48 DRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHL 98 (196)
Q Consensus 48 ~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~~~~~~~~~~~~l~~i 98 (196)
++.+.++..+.+.++.....+|+..-..... .|....|+.+....+|...
T Consensus 210 ~e~e~l~~~~~k~~~k~~~~~~~k~k~K~~~-~L~rrGF~~~~I~~~l~~~ 259 (263)
T PRK14135 210 EEQELLQKELEKAYRKYSKYDGYELKQKLKQ-ALYRKGFSYDDIDSFLREY 259 (263)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHCCCCHHHHHHHHHHh
Confidence 3455555554444443322234333233333 4444557776665555443
No 128
>COG3462 Predicted membrane protein [Function unknown]
Probab=20.85 E-value=1.3e+02 Score=20.53 Aligned_cols=28 Identities=11% Similarity=0.157 Sum_probs=17.9
Q ss_pred HHHHHHHHHhccCCcChhhHHHHHHHHH
Q 029273 31 ILLETIFQKIAQFKVKPDRFSVIKEMVT 58 (196)
Q Consensus 31 ~~l~~v~~~l~~~~~~~~~F~~~k~~~~ 58 (196)
...+.+-+....-++++++|+++++.+.
T Consensus 89 RA~eIlkER~AkGEItEEEY~r~~~~ir 116 (117)
T COG3462 89 RAEEILKERYAKGEITEEEYRRIIRTIR 116 (117)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 3445555566666777777777776654
No 129
>PF06576 DUF1133: Protein of unknown function (DUF1133); InterPro: IPR010557 This family consists of a number of hypothetical proteins from Escherichia coli O157:H7 and Salmonella typhi. The function of this family is unknown.
Probab=20.74 E-value=3.6e+02 Score=20.04 Aligned_cols=69 Identities=16% Similarity=0.090 Sum_probs=48.9
Q ss_pred HHHHHHHHhhcCCCCChhHHHhhC-----CCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHhcc
Q 029273 72 LAMYYCSLILQDQTWPWMEELEVL-----PHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFK 142 (196)
Q Consensus 72 ~a~~~~~~ll~~~~~~~~~~~~~l-----~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~ 142 (196)
.+...+++++....++...+.++| ..++=++|..|.+.++.+..-..+. .-+-+||..+=.-+-..|..
T Consensus 41 ~~g~mfnqLl~s~kitKtaI~~aLr~mkKsGi~k~EL~~~~~eil~gK~kS~La--~ctD~Eal~iDrVI~~vL~~ 114 (176)
T PF06576_consen 41 KGGNMFNQLLASKKITKTAINEALRRMKKSGISKPELEAFLREILNGKQKSWLA--FCTDDEALFIDRVIGEVLAE 114 (176)
T ss_pred chhhHHHHHHhcccccHHHHHHHHHHHHHhcCCcHHHHHHHHHHhCcccccccc--eecchHHHHHHHHHHHHHHh
Confidence 345678999988888876665666 3688899999999999766555543 34457887765556556643
No 130
>PF14162 YozD: YozD-like protein
Probab=20.71 E-value=1.3e+02 Score=17.56 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHhhcCCCCChhHHHhhCCCCCHHHHH
Q 029273 69 PFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLA 104 (196)
Q Consensus 69 P~~~a~~~~~~ll~~~~~~~~~~~~~l~~it~~dl~ 104 (196)
.-..|-..+..++..++-+.++-+..+..||++-+.
T Consensus 10 TEEIAefFy~eL~kRGyvP~e~El~eiADItFeYll 45 (57)
T PF14162_consen 10 TEEIAEFFYHELVKRGYVPTEEELEEIADITFEYLL 45 (57)
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHH
Confidence 345666677777777777777778888888887654
No 131
>PF05435 Phi-29_GP3: Phi-29 DNA terminal protein GP3; InterPro: IPR008770 This family consists of DNA terminal protein Gp3 sequences from phi-29 like bacteriophage. DNA terminal protein Gp3 is linked to the 5' ends of both strands of the genome through a phosphodiester bond between the beta-hydroxyl group of a serine residue and the 5'-phosphate of the terminal deoxyadenylate. This protein is essential for DNA replication and is involved in the priming of DNA elongation [].; GO: 0006260 DNA replication, 0006269 DNA replication, synthesis of RNA primer, 0018142 protein-DNA covalent cross-linking; PDB: 2EX3_D.
Probab=20.66 E-value=3.5e+02 Score=20.79 Aligned_cols=56 Identities=16% Similarity=0.249 Sum_probs=32.4
Q ss_pred CCCChhHHHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHh
Q 029273 84 QTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVF 140 (196)
Q Consensus 84 ~~~~~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l 140 (196)
.+|..+++++.|.+|..+|+-..+-. +....++-+=.-|-+-+....++..+..-+
T Consensus 196 S~~~aDelve~LkkiPpDDFyElfli-~~EISFE~FDSEg~~veasE~~l~ki~sYl 251 (266)
T PF05435_consen 196 SFWEADELVEKLKKIPPDDFYELFLI-YNEISFENFDSEGALVEASESILEKIRSYL 251 (266)
T ss_dssp BSHHHHHHHHHHHTS-HHHHHHHHHH-HTTT-----------HHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHhcCCchHHHHHHHH-HhhhhhhhcccccchHHhHHHHHHHHHHHH
Confidence 56788999999999999998877654 355566655555556666666666665554
No 132
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=20.57 E-value=90 Score=15.94 Aligned_cols=14 Identities=21% Similarity=0.534 Sum_probs=9.4
Q ss_pred CCCCHHHHHHHHHH
Q 029273 96 PHLEAEDLAKFVPM 109 (196)
Q Consensus 96 ~~it~~dl~~f~~~ 109 (196)
..+|.+|++.|...
T Consensus 15 ~Gls~eeir~FL~~ 28 (30)
T PF08671_consen 15 SGLSKEEIREFLEF 28 (30)
T ss_dssp TT--HHHHHHHHHH
T ss_pred cCCCHHHHHHHHHh
Confidence 37899999998764
Done!