Query 029273
Match_columns 196
No_of_seqs 171 out of 1063
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 16:42:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029273.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029273hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q2l_A Protease III; hydrolase 99.9 8.6E-22 2.9E-26 178.3 20.1 180 2-194 564-744 (939)
2 3cww_A Insulysin, insulin-degr 99.9 6.1E-22 2.1E-26 180.2 18.0 189 2-194 582-770 (990)
3 3gwb_A Peptidase M16 inactive 99.7 7.2E-16 2.4E-20 128.0 20.2 137 6-143 83-224 (434)
4 3amj_B Zinc peptidase inactive 99.7 1.3E-15 4.4E-20 126.1 14.7 135 6-141 78-215 (424)
5 1pp9_B Ubiquinol-cytochrome C 99.6 1.1E-14 3.8E-19 120.9 17.5 132 5-138 92-225 (439)
6 1hr6_A Alpha-MPP, mitochondria 99.6 2.7E-14 9.2E-19 120.4 19.1 137 4-142 73-212 (475)
7 3d3y_A Uncharacterized protein 99.6 8.2E-15 2.8E-19 121.0 13.9 133 6-141 72-224 (425)
8 3cx5_A Cytochrome B-C1 complex 99.6 3.3E-15 1.1E-19 123.8 11.1 132 3-135 61-199 (431)
9 3cx5_B Cytochrome B-C1 complex 99.6 1E-14 3.5E-19 118.1 12.7 135 5-141 58-194 (352)
10 3eoq_A Putative zinc protease; 99.5 7.9E-14 2.7E-18 115.1 14.0 134 6-141 72-208 (406)
11 3ami_A Zinc peptidase; alpha/b 99.5 1.7E-13 5.9E-18 114.3 15.2 137 6-142 77-216 (445)
12 3hdi_A Processing protease; CA 99.5 7.5E-14 2.6E-18 115.6 12.4 136 5-142 71-209 (421)
13 1hr6_B Beta-MPP, mitochondrial 99.5 1.2E-13 4.2E-18 114.9 13.0 136 6-142 77-215 (443)
14 1pp9_A Ubiquinol-cytochrome C 99.5 3.2E-13 1.1E-17 112.8 15.3 136 6-142 83-221 (446)
15 3go9_A Insulinase family prote 99.3 1.7E-11 5.9E-16 103.9 10.2 133 6-142 102-238 (492)
16 2fge_A Atprep2;, zinc metallop 99.3 2.2E-11 7.6E-16 111.0 10.7 137 3-140 621-783 (995)
17 1q2l_A Protease III; hydrolase 99.2 6.4E-11 2.2E-15 107.3 12.4 137 5-142 91-234 (939)
18 3s5m_A Falcilysin; M16 metallo 99.1 3.6E-10 1.2E-14 104.4 11.6 136 6-142 157-327 (1193)
19 3cww_A Insulysin, insulin-degr 99.1 8.6E-10 3E-14 100.4 12.2 137 5-142 105-251 (990)
20 2fge_A Atprep2;, zinc metallop 99.0 1E-09 3.5E-14 100.1 10.9 135 6-141 105-260 (995)
21 3ih6_A Putative zinc protease; 98.7 3.3E-07 1.1E-11 67.9 11.7 105 18-123 85-193 (197)
22 3gwb_A Peptidase M16 inactive 98.4 1.1E-06 3.9E-11 72.3 10.3 108 17-125 311-422 (434)
23 3hdi_A Processing protease; CA 98.4 2.7E-06 9.4E-11 69.9 11.6 106 18-125 296-405 (421)
24 3eoq_A Putative zinc protease; 98.4 1.8E-06 6.3E-11 70.8 10.3 106 18-125 296-405 (406)
25 3amj_B Zinc peptidase inactive 98.4 2.7E-06 9.2E-11 69.9 10.6 107 18-125 305-415 (424)
26 3cx5_A Cytochrome B-C1 complex 98.3 5.8E-06 2E-10 67.9 11.9 107 18-125 302-414 (431)
27 1hr6_B Beta-MPP, mitochondrial 98.3 1E-05 3.4E-10 66.9 13.0 107 18-125 317-429 (443)
28 1pp9_A Ubiquinol-cytochrome C 98.3 7.4E-06 2.5E-10 68.0 11.9 107 18-125 320-429 (446)
29 1pp9_B Ubiquinol-cytochrome C 98.3 1E-05 3.6E-10 66.6 12.5 105 18-124 322-430 (439)
30 1hr6_A Alpha-MPP, mitochondria 98.3 1.2E-05 4E-10 67.4 13.0 106 18-124 316-437 (475)
31 3d3y_A Uncharacterized protein 98.0 5.8E-05 2E-09 61.7 11.1 103 18-123 315-421 (425)
32 3ami_A Zinc peptidase; alpha/b 98.0 2.4E-05 8.3E-10 64.8 8.7 106 18-124 312-422 (445)
33 3s5m_A Falcilysin; M16 metallo 97.9 9.1E-06 3.1E-10 75.4 4.6 136 4-140 787-954 (1193)
34 3go9_A Insulinase family prote 97.5 0.00096 3.3E-08 56.2 11.3 137 5-141 313-466 (492)
35 3cx5_B Cytochrome B-C1 complex 75.4 1.9 6.6E-05 33.7 3.1 75 19-125 270-344 (352)
36 2r9i_A Putative phage capsid p 61.3 11 0.00038 24.8 3.8 44 97-140 3-47 (141)
37 2dbn_A Hypothetical protein YB 54.7 58 0.002 27.0 8.0 89 47-143 55-153 (461)
38 3gnn_A Nicotinate-nucleotide p 49.0 16 0.00054 28.6 3.7 39 95-135 235-273 (298)
39 1dd4_C 50S ribosomal protein L 41.9 23 0.00078 18.7 2.5 30 88-117 3-32 (40)
40 1zav_U 50S ribosomal protein L 41.5 13 0.00043 18.4 1.3 24 87-110 2-25 (30)
41 3l0g_A Nicotinate-nucleotide p 36.1 26 0.0009 27.4 3.1 39 95-135 233-271 (300)
42 1r9f_A Core protein P19; prote 35.2 74 0.0025 20.8 4.6 31 5-37 86-116 (136)
43 2fhm_A Probable acylphosphatas 32.5 41 0.0014 20.9 3.1 35 3-37 26-61 (91)
44 1eoq_A GAG polyprotein capsid 32.5 97 0.0033 19.7 5.9 64 47-111 8-73 (96)
45 1ulr_A Putative acylphosphatas 32.1 43 0.0015 20.7 3.1 35 3-37 26-61 (88)
46 3paj_A Nicotinate-nucleotide p 31.5 48 0.0016 26.1 3.9 38 95-134 257-294 (320)
47 1rpu_A 19 kDa protein; RNAI, p 30.9 89 0.0031 21.3 4.6 31 5-37 108-138 (172)
48 1xou_B Z5138 gene product; coi 30.4 27 0.00092 21.1 1.8 40 48-90 29-68 (95)
49 1qpo_A Quinolinate acid phosph 30.4 49 0.0017 25.5 3.8 40 96-135 221-261 (284)
50 1qap_A Quinolinic acid phospho 30.2 61 0.0021 25.1 4.3 39 95-135 234-272 (296)
51 3tqv_A Nicotinate-nucleotide p 29.3 41 0.0014 26.0 3.2 39 95-135 224-262 (287)
52 3p04_A Uncharacterized BCR; SE 29.1 1.1E+02 0.0036 19.1 5.0 48 93-141 8-55 (87)
53 1use_A VAsp, vasodilator-stimu 28.6 75 0.0025 17.2 3.2 20 45-64 4-23 (45)
54 3bbz_A P protein, phosphoprote 28.4 56 0.0019 18.0 2.7 15 46-60 33-47 (49)
55 3aqo_A Probable secdf protein- 27.8 49 0.0017 24.6 3.3 22 117-138 192-213 (229)
56 2bjd_A Acylphosphatase; hypert 27.2 53 0.0018 20.9 3.0 34 3-36 38-72 (101)
57 1urr_A CG18505 protein; acylph 26.8 55 0.0019 20.9 3.0 34 4-37 36-70 (102)
58 2vh7_A Acylphosphatase-1; hydr 26.5 56 0.0019 20.7 3.0 35 3-37 32-67 (99)
59 2atz_A H. pylori predicted cod 25.8 1E+02 0.0035 21.7 4.3 54 113-166 110-165 (180)
60 1w2i_A Acylphosphatase; hydrol 25.5 45 0.0015 20.8 2.3 34 3-36 28-62 (91)
61 2gv1_A Probable acylphosphatas 25.2 46 0.0016 20.8 2.3 32 5-36 30-62 (92)
62 3o65_A Putative ataxin-3-like 24.1 49 0.0017 24.0 2.5 62 73-134 16-86 (191)
63 1jyr_A Growth factor receptor- 23.1 43 0.0015 20.9 1.9 17 119-135 5-21 (96)
64 2l6a_A Nacht, LRR and PYD doma 23.0 96 0.0033 19.8 3.6 54 87-140 11-66 (102)
65 1nrv_A Growth factor receptor- 22.9 46 0.0016 21.0 2.0 17 119-135 7-23 (105)
66 1i3z_A EWS/FLI1 activated tran 22.8 47 0.0016 20.8 2.1 16 120-135 6-21 (103)
67 1d4t_A T cell signal transduct 21.3 52 0.0018 20.7 2.1 16 120-135 7-22 (104)
68 2ekx_A Cytoplasmic tyrosine-pr 21.3 52 0.0018 21.0 2.1 19 117-135 11-29 (110)
69 2dlz_A Protein VAV-2; RHO fami 20.9 57 0.0019 21.2 2.2 18 118-135 17-34 (118)
70 2zzd_B Thiocyanate hydrolase s 20.9 2.2E+02 0.0075 19.8 5.6 76 68-143 66-145 (157)
71 2bbu_A Suppressor of cytokine 20.6 79 0.0027 22.1 3.0 22 114-135 20-41 (164)
72 3pqz_A Growth factor receptor- 20.5 55 0.0019 21.1 2.1 17 119-135 16-32 (117)
73 3tkz_A Tyrosine-protein phosph 20.3 55 0.0019 20.8 2.0 17 119-135 9-25 (109)
74 2ysx_A Signaling inositol poly 20.2 60 0.0021 21.1 2.2 19 117-135 10-28 (119)
No 1
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.89 E-value=8.6e-22 Score=178.31 Aligned_cols=180 Identities=15% Similarity=0.285 Sum_probs=151.5
Q ss_pred CceecceEEEeecCceeEEEEccccchHHHHHHHHHHHhccCCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhh
Q 029273 2 NMVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLIL 81 (196)
Q Consensus 2 A~~Agl~~~~~~~~~g~~i~v~G~s~kl~~~l~~v~~~l~~~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll 81 (196)
|.+||++++++. .+|+.++++|++++++.+++.+.+.+.+|.+++++|+++|++++++++|...++|+.++.+.+..++
T Consensus 564 ~~l~G~~~~~~~-~~g~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~l~~~~~~~p~~~a~~~l~~~l 642 (939)
T 1q2l_A 564 ASVGGISFSTNA-NNGLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLS 642 (939)
T ss_dssp HHHTTEEEEEEE-SSEEEEEEEEESSSHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHTT
T ss_pred HHHcCcEEEEee-CCcEEEEEEcccHhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhhcChHHHHHHHHHHHh
Confidence 578999999999 9999999999999999999999999999999999999999999999999866689999999999999
Q ss_pred cCCCCChhHHHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHhccCCCCCccCCCCCCCCccce
Q 029273 82 QDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRV 161 (196)
Q Consensus 82 ~~~~~~~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 161 (196)
+++.|+..+.++.|+++|++|+.+|+++++.+.+++++|+||+++++++.+++.+.+.+.... .+ + ...+.
T Consensus 643 ~~~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~~~vvGn~~~~~~~~l~~~~~~~l~~~~----~~--~---~~~~~ 713 (939)
T 1q2l_A 643 QVPYFSRDERRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADG----SE--W---CRNKD 713 (939)
T ss_dssp SSSCCCHHHHHHHGGGCCHHHHHHHHHHHHTTCEEEEEEEESCCHHHHHHHHHHHHHHHTCCC----SC--C---CCCEE
T ss_pred cCCCCCHHHHHHHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHccCC----cc--c---cccce
Confidence 988899989999999999999999999999999999999999999999999999888885321 01 1 11223
Q ss_pred EEeCCCceEEEecCCCCCCCCCeEE-EEEEEcCC
Q 029273 162 VKLEKGKNYVYSNQGLNPSDENSCL-VHYIQVQE 194 (196)
Q Consensus 162 ~~l~~g~~~~~~~~~~~~~~~ns~i-~~y~Q~g~ 194 (196)
..++.|..+.+... . .+.++++ .+|||+|.
T Consensus 714 ~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~ 744 (939)
T 1q2l_A 714 VVVDKKQSVIFEKA--G-NSTDSALAAVFVPTGY 744 (939)
T ss_dssp ECCCSCEEEEEEEC--C-SSSCEEEEEEEECSSC
T ss_pred EEeCCCceEEEecC--C-CCCCceeEEEEEecCC
Confidence 34455544444433 2 2446666 88889873
No 2
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=99.88 E-value=6.1e-22 Score=180.22 Aligned_cols=189 Identities=35% Similarity=0.549 Sum_probs=156.0
Q ss_pred CceecceEEEeecCceeEEEEccccchHHHHHHHHHHHhccCCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhh
Q 029273 2 NMVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLIL 81 (196)
Q Consensus 2 A~~Agl~~~~~~~~~g~~i~v~G~s~kl~~~l~~v~~~l~~~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll 81 (196)
|.+||++++++.+.+|+.++++|++++++.+++.+.+.+.+|.+++++|+++|++++++++|....+|+.+|...+..++
T Consensus 582 ~~l~G~~~~~~~~~~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~~~~~~p~~~a~~~~~~~l 661 (990)
T 3cww_A 582 AELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLM 661 (990)
T ss_dssp HHHTTEEEEEEEETTEEEEEEEEESTTHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHH
T ss_pred HHhCCeEEEEEEcCCeEEEEEEeccHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHh
Confidence 56799999999999999999999999999999999999999999999999999999999999865589999999999999
Q ss_pred cCCCCChhHHHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHhccCCCCCccCCCCCCCCccce
Q 029273 82 QDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRV 161 (196)
Q Consensus 82 ~~~~~~~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 161 (196)
+++.|..++..+.|+++|++||.+|+++++++.+++++|+||++++++..+.+.+.+.+..- |...+.++.+....+.
T Consensus 662 ~~~~~~~~~~~~~l~~lt~~~l~~~~~~~~~~~~~~~~v~Gn~~~~~~~~~~~~~~~~l~~l--~~~~~~~~~~~~~~~~ 739 (990)
T 3cww_A 662 TEVAWTKDELKEALADVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEH--AHTKPLLPSQLAAYRE 739 (990)
T ss_dssp BSSCCCHHHHHHHHTTCCHHHHHHHHHHHHHEEEEEEEEEESCCHHHHHHHHHHHHHHHHHH--HCCEECCGGGCCCCCB
T ss_pred CCCCCCHHHHHHHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHhcc--CCCCCCchhhccccce
Confidence 98889988899999999999999999999999999999999999999999976666554310 0001111111112244
Q ss_pred EEeCCCceEEEecCCCCCCCCCeEEEEEEEcCC
Q 029273 162 VKLEKGKNYVYSNQGLNPSDENSCLVHYIQVQE 194 (196)
Q Consensus 162 ~~l~~g~~~~~~~~~~~~~~~ns~i~~y~Q~g~ 194 (196)
+.++.|..+++.. .++++.|+++.+|+|.|.
T Consensus 740 ~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~ 770 (990)
T 3cww_A 740 VQLPDRGWFVYQQ--RNEVHNNSGIEIYYQTDM 770 (990)
T ss_dssp BCCCTTEEEEEEE--ECSSCSSEEEEEEEEEEE
T ss_pred EEcCCCCeEEEEe--cCCCCCCcEEEEEEeCCC
Confidence 5667776554533 345788999999999873
No 3
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=99.72 E-value=7.2e-16 Score=127.96 Aligned_cols=137 Identities=14% Similarity=0.165 Sum_probs=124.9
Q ss_pred cceEEEeecCceeEEEEccccch--HHHHHHHHHHHhccCCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhcC
Q 029273 6 GLDYGINHTESGFEVTVVGYNHK--LRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD 83 (196)
Q Consensus 6 gl~~~~~~~~~g~~i~v~G~s~k--l~~~l~~v~~~l~~~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~ 83 (196)
|.+++.+.+.+++.++++|++++ ++.+++.+.+.+.+|.+++++|++.|+.+++++++. .++|..++...+..++++
T Consensus 83 g~~~~a~t~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~-~~~p~~~~~~~~~~~~~~ 161 (434)
T 3gwb_A 83 GADFGNGAYKDMAVASLRSLSAVDKREPALKLFAEVVGKPTFPADSLARIKNQMLAGFEYQ-KQNPGKLASLELMKRLYG 161 (434)
T ss_dssp TCEEEEEECSSCEEEEEEEECSHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHT
T ss_pred CCEEEeeecCCeEEEEEEecCccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHhcC
Confidence 78889998899999999999999 999999999999999999999999999999999998 689999999999888885
Q ss_pred -CCCC--hhHHHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHhccC
Q 029273 84 -QTWP--WMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKG 143 (196)
Q Consensus 84 -~~~~--~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~ 143 (196)
++|. ..+..+.|+++|.+|+++|+++++.+.++.++|+||++.+++.++++...+.|+..
T Consensus 162 ~~~~~~~~~G~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~l~~~ 224 (434)
T 3gwb_A 162 THPYAHASDGDAKSIPPITLAQLKAFHAKAYAAGNVVIALVGDLSRSDAEAIAAQVSAALPKG 224 (434)
T ss_dssp TSTTSSCTTCCTTTTTTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCHHHHHhCCHHHHHHHHHHhcCcCCeEEEEEcCCCHHHHHHHHHHHHhcCCCC
Confidence 3443 33467999999999999999999999999999999999999999999988888543
No 4
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=99.67 E-value=1.3e-15 Score=126.13 Aligned_cols=135 Identities=11% Similarity=0.076 Sum_probs=119.5
Q ss_pred cceEEEeecCceeEEEEccccchH--HHHHHHHHHHhccCCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhcC
Q 029273 6 GLDYGINHTESGFEVTVVGYNHKL--RILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD 83 (196)
Q Consensus 6 gl~~~~~~~~~g~~i~v~G~s~kl--~~~l~~v~~~l~~~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~ 83 (196)
|.+++...+.+++.++++++++++ +.+++.+.+.+.+|.+++++|++.|+.++.++++. .++|...+.+.+...+++
T Consensus 78 G~~~~a~t~~~~t~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~e~~~v~~e~~~~-~~~p~~~~~~~~~~~~~~ 156 (424)
T 3amj_B 78 GARLGGGAEADRASFSLRVLSSPAERNSALTILRDILAHPTFPAPVLERERARAIAGLREA-QTQPGSILGRRFTELAYG 156 (424)
T ss_dssp TCEEEEEECSSCEEEEEEEESSHHHHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHH-TTSHHHHHHHHHHHHHHT
T ss_pred CCEEEeecCCCeEEEEEEEeccccChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHhcCC
Confidence 778888888899999999999998 99999999999999999999999999999999987 579999999999888885
Q ss_pred -CCCChhHHHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHhc
Q 029273 84 -QTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFF 141 (196)
Q Consensus 84 -~~~~~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~ 141 (196)
++|......+.|+++|.+++++|+++++.+.++.++|+||++.+++.++++...+.++
T Consensus 157 ~~p~~~~~~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~Gd~~~~~~~~~~~~~f~~~~ 215 (424)
T 3amj_B 157 KHPYGHVSSVATLQKISRDQLVSFHRTHYVARTAVVTLVGDITRAEAETIAQQLTADLP 215 (424)
T ss_dssp TSGGGCCCCHHHHHHCCHHHHHHHHHHHSCTTSCEEEEEESCCHHHHHHHHHHTTTTSC
T ss_pred CCCCCCCCCHHHHHhCCHHHHHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHHHHhcCC
Confidence 4443221557778899999999999999999999999999999999999887766664
No 5
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=99.64 E-value=1.1e-14 Score=120.94 Aligned_cols=132 Identities=8% Similarity=0.048 Sum_probs=119.7
Q ss_pred ecceEEEeecCceeEEEEccccchHHHHHHHHHHHhccCCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhcCC
Q 029273 5 AGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ 84 (196)
Q Consensus 5 Agl~~~~~~~~~g~~i~v~G~s~kl~~~l~~v~~~l~~~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~~ 84 (196)
.|.+++.+.+.+++.+++++++++++.+++.+.+.+.+|.+++++|++.|+.+++++++. .++|..++.+.+...++++
T Consensus 92 ~G~~~na~t~~~~t~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~v~~e~~~~-~~~p~~~~~~~~~~~~~~~ 170 (439)
T 1pp9_B 92 VGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVA-LQNPQAHVIENLHAAAYRN 170 (439)
T ss_dssp TTCEEEEEECSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHH-TTSHHHHHHHHHHHHHBSS
T ss_pred hCCeEEEEecceEEEEEEEeehhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHHHhcC
Confidence 478899998999999999999999999999999999999999999999999999999986 5799999999998888864
Q ss_pred C--CChhHHHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHH
Q 029273 85 T--WPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIED 138 (196)
Q Consensus 85 ~--~~~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~ 138 (196)
+ ++..+..+.|+++|.+|+++|+++++.+.++.++|+|| +.+++.++++.+.+
T Consensus 171 ~~~~~~~g~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~-~~~~~~~~~~~~~~ 225 (439)
T 1pp9_B 171 ALANSLYCPDYRIGKVTPVELHDYVQNHFTSARMALIGLGV-SHPVLKQVAEQFLN 225 (439)
T ss_dssp GGGSCSSCCGGGTTTCCHHHHHHHHHHHCSGGGEEEEEESS-CHHHHHHHHHHHCC
T ss_pred CCCCCccCCHHHHhhcCHHHHHHHHHHhCCCCceEEEEeCC-CHHHHHHHHHHHhC
Confidence 2 33445778999999999999999999999999999999 99999998887655
No 6
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=99.63 E-value=2.7e-14 Score=120.35 Aligned_cols=137 Identities=10% Similarity=0.097 Sum_probs=122.7
Q ss_pred eecceEEEeecCceeEEEEccccchHHHHHHHHHHHhccCCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhcC
Q 029273 4 VAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD 83 (196)
Q Consensus 4 ~Agl~~~~~~~~~g~~i~v~G~s~kl~~~l~~v~~~l~~~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~ 83 (196)
..|.+++.+.+.+++.+.+++++++++.+++.+.+.+.+|.+++++|++.|+.+++++++. .++|..++.+.+...+++
T Consensus 73 ~~G~~~na~t~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~-~~~p~~~~~~~~~~~~~~ 151 (475)
T 1hr6_A 73 LLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEV-WMKPELVLPELLHTAAYS 151 (475)
T ss_dssp HTTSCEEEEECSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTT
T ss_pred HcCCEEEEEEccCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHhcC
Confidence 3478889998899999999999999999999999999999999999999999999999986 579999999999998885
Q ss_pred C-C--CChhHHHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHhcc
Q 029273 84 Q-T--WPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFK 142 (196)
Q Consensus 84 ~-~--~~~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~ 142 (196)
. + ++..+..+.|+++|.+||++|+++++.+.++.++|+| ++.+++.++++...+.+..
T Consensus 152 ~~~~~~~~~G~~~~l~~it~~~l~~f~~~~y~p~n~~l~v~G-~d~~~~~~~i~~~f~~~~~ 212 (475)
T 1hr6_A 152 GETLGSPLICPRGLIPSISKYYLLDYRNKFYTPENTVAAFVG-VPHEKALELTGKYLGDWQS 212 (475)
T ss_dssp TSGGGSCSSCCGGGGGGCCHHHHHHHHHHHCCGGGEEEEEES-SCHHHHHHHHHHHHTTCCC
T ss_pred CCCCCCCCcCCHHHHhhcCHHHHHHHHHHhCCcccEEEEEeC-CCHHHHHHHHHHHhccCCC
Confidence 3 3 3334567889999999999999999999999999999 9999999999887776643
No 7
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=99.61 E-value=8.2e-15 Score=121.02 Aligned_cols=133 Identities=16% Similarity=0.201 Sum_probs=115.3
Q ss_pred cceEEEeecCce----eEEEEccccc-------hHHHHHHHHHHHhccCC-----cChhhHHHHHHHHHHHhhcccccCh
Q 029273 6 GLDYGINHTESG----FEVTVVGYNH-------KLRILLETIFQKIAQFK-----VKPDRFSVIKEMVTKEYHNNKFLQP 69 (196)
Q Consensus 6 gl~~~~~~~~~g----~~i~v~G~s~-------kl~~~l~~v~~~l~~~~-----~~~~~F~~~k~~~~~~l~n~~~~~P 69 (196)
|.+++++.+.++ +.++++++++ +++.+++.+.+.+.+|. +++++|++.|+.+.+++++. .++|
T Consensus 72 G~~~~a~t~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~~~~~~~~k~~v~~e~~~~-~~~p 150 (425)
T 3d3y_A 72 GASFGIGVSKKGNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESI-VEDK 150 (425)
T ss_dssp SCEEEEEEEEETTEEEEEEEEEEECGGGCSSCCHHHHHHHHHHHHHHSCSEETTEECHHHHHHHHHHHHHHHHHH-HHSH
T ss_pred CceEeeeeeecCceEEEEEEEEecChhhccchhHHHHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHH-hhCH
Confidence 667777666555 7999999998 69999999999999999 99999999999999999986 5799
Q ss_pred HHHHHHHHHHhhc-C-CCCC--hhHHHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHhc
Q 029273 70 FQLAMYYCSLILQ-D-QTWP--WMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFF 141 (196)
Q Consensus 70 ~~~a~~~~~~ll~-~-~~~~--~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~ 141 (196)
..++.+.+...++ + +++. ..+..+.|+++|.+|+++|+++++.+.++.++|+||++.+++.+++ ...+ ++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~-~~~~-~~ 224 (425)
T 3d3y_A 151 QTYASLALQSVYFNQSEDQKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLF-KQLP-FT 224 (425)
T ss_dssp HHHHHHHHHHHHTTTCTTTTSCTTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCCHHHHHHHH-HTSC-CC
T ss_pred HHHHHHHHHHHhccCCCCccCCCCCCHHHHHhCCHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH-HhCC-CC
Confidence 9999999988888 4 4443 4456788888999999999999999999999999999999999888 6555 53
No 8
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=99.61 E-value=3.3e-15 Score=123.77 Aligned_cols=132 Identities=18% Similarity=0.095 Sum_probs=118.5
Q ss_pred ceecceEEEeecCceeEEEEccccchHHHHHHHHHHHhccCC---cChhhHHHHHHHHHHHhhcccccCh-HHHHHHHHH
Q 029273 3 MVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFK---VKPDRFSVIKEMVTKEYHNNKFLQP-FQLAMYYCS 78 (196)
Q Consensus 3 ~~Agl~~~~~~~~~g~~i~v~G~s~kl~~~l~~v~~~l~~~~---~~~~~F~~~k~~~~~~l~n~~~~~P-~~~a~~~~~ 78 (196)
+..|.+++.+.+.+++.+++++++++++.+++.+.+.+.+|. +++++|++.|+.+++++++. .++| ..++...+.
T Consensus 61 ~~~G~~~na~t~~~~t~~~~~~~~~~l~~~l~ll~~~~~~p~~~~f~~~~~~~ek~~v~~e~~~~-~~~p~~~~~~~~~~ 139 (431)
T 3cx5_A 61 AKEGLALSSNISRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQDF-EDNDHPNRVLEHLH 139 (431)
T ss_dssp HHTTCEEEEEECSSCEEEEEEECSTTHHHHHHHHHHHHHTCSTTTTCHHHHHHHHHHHHHHHHHH-HHHCHHHHHHHHHH
T ss_pred HHcCCeeeeeecCCeEEEEEEechhhHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHhh-hcCchhHHHHHHHH
Confidence 356889999999999999999999999999999999999999 99999999999999999986 5789 999999998
Q ss_pred HhhcC-CC--CChhHHHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHH
Q 029273 79 LILQD-QT--WPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQY 135 (196)
Q Consensus 79 ~ll~~-~~--~~~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~ 135 (196)
..+++ ++ ++..+..+.|+++|.+|+++|+++++.+.++.++|+||++.+++.++++.
T Consensus 140 ~~~~~~~~~~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~ 199 (431)
T 3cx5_A 140 STAFQNTPLSLPTRGTLESLENLVVADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIES 199 (431)
T ss_dssp HHHTTTSGGGSCTTCCHHHHHTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHTT
T ss_pred HHhcCCCCCCCCCCCCHHHHhhCCHHHHHHHHHhcCCCCcEEEEEEcCCCHHHHHHHHHH
Confidence 88875 33 44455678889999999999999999999999999999999998888765
No 9
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=99.60 E-value=1e-14 Score=118.07 Aligned_cols=135 Identities=9% Similarity=0.059 Sum_probs=120.3
Q ss_pred ecceEEEeecCceeEEEEccccchHHHHHHHHHHHhccCCcChhhHH-HHHHHHHHHhhcccccChHHHHHHHHHHhhcC
Q 029273 5 AGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFS-VIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD 83 (196)
Q Consensus 5 Agl~~~~~~~~~g~~i~v~G~s~kl~~~l~~v~~~l~~~~~~~~~F~-~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~ 83 (196)
.|.+++.+.+.+++.+.+++.+++++.+++.+.+.+.+|.+++++|+ +.|+.++.++++. .++|..++.+.+...+++
T Consensus 58 ~G~~~na~t~~~~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~~~k~~v~~e~~~~-~~~p~~~~~~~~~~~~~~ 136 (352)
T 3cx5_B 58 LGGTFKSTLDREYITLKATFLKDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAVA-EQCPVKSAEDQLYAITFR 136 (352)
T ss_dssp HTCEEEEEECSSCEEEEEEEEGGGHHHHHHHHHHHHHHBCCCHHHHHHTHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHT
T ss_pred hCCeEEEEEccceEEEEEEechhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhC
Confidence 47788888889999999999999999999999999999999999998 9999999999976 579999999999888886
Q ss_pred CCCChhHHHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHH-HHHHHHhc
Q 029273 84 QTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSII-QYIEDVFF 141 (196)
Q Consensus 84 ~~~~~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~-~~~~~~l~ 141 (196)
+++......+.|+++|.+|+++|+++++.+.++.+.|+| ++.+++.+++ +...+.|+
T Consensus 137 ~p~~~~~~~~~l~~it~~~l~~f~~~~y~~~n~~l~v~G-~~~~~~~~~i~~~~f~~~~ 194 (352)
T 3cx5_B 137 KGLGNPLLYDGVERVSLQDIKDFADKVYTKENLEVSGEN-VVEADLKRFVDESLLSTLP 194 (352)
T ss_dssp TTTTSCSSCCSSSCCCHHHHHHHHHHHCCGGGEEEEEES-SCHHHHHHHHHHSTTTTSC
T ss_pred CCCCCccchhhhccCCHHHHHHHHHHhCCcCcEEEEEeC-CCHHHHHHHHHHHhhccCC
Confidence 555433347899999999999999999999999999999 9999999988 66655554
No 10
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=99.55 E-value=7.9e-14 Score=115.09 Aligned_cols=134 Identities=11% Similarity=0.065 Sum_probs=120.4
Q ss_pred cceEEEeecCceeEEEEccccchHHHHHHHHHHHhccCCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhcC-C
Q 029273 6 GLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD-Q 84 (196)
Q Consensus 6 gl~~~~~~~~~g~~i~v~G~s~kl~~~l~~v~~~l~~~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~-~ 84 (196)
|.+++...+.+...+.+++.+++++.+++.+.+.+ +|.+++++|++.|..++.+++.. .++|...+...+...+++ +
T Consensus 72 G~~~na~t~~d~t~y~~~~~~~~l~~~l~ll~d~~-~p~f~~~~~~~ek~~v~~e~~~~-~~~p~~~~~~~~~~~~~~~~ 149 (406)
T 3eoq_A 72 GAQYNAFTSEEATVYYGAVLPEFAYDLLGLFAKLL-RPALREEDFQTEKLVILEEIARY-QDRPGFMAYEWARARFFQGH 149 (406)
T ss_dssp TCEEEEEECSSCEEEEEEECGGGHHHHHHHHHHHT-SCCCCHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHTTC
T ss_pred CCCccceecCCeEEEEEEecHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCC
Confidence 77888888889999999999999999999999999 99999999999999999999987 579999999999888885 3
Q ss_pred CC--ChhHHHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHhc
Q 029273 85 TW--PWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFF 141 (196)
Q Consensus 85 ~~--~~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~ 141 (196)
+| +..+..+.|+++|.+|+++|+++++.+.++.+.|+||++.+++.++++...+.|.
T Consensus 150 p~~~~~~G~~~~i~~~t~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~ 208 (406)
T 3eoq_A 150 PLGNSVLGTRESITALTREGMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAERLTEAWP 208 (406)
T ss_dssp GGGCCSSCCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCC
T ss_pred CCCCCCcCCHHHHhhCCHHHHHHHHHHhCCccCEEEEEEcCCCHHHHHHHHHHHhcCCC
Confidence 33 3334567888899999999999999999999999999999999999988776664
No 11
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=99.54 E-value=1.7e-13 Score=114.31 Aligned_cols=137 Identities=9% Similarity=0.021 Sum_probs=118.9
Q ss_pred cceEEEeecCceeEEEEccccchHHHHHHHHHHHhccCCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhcC-C
Q 029273 6 GLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD-Q 84 (196)
Q Consensus 6 gl~~~~~~~~~g~~i~v~G~s~kl~~~l~~v~~~l~~~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~-~ 84 (196)
|.+++...+.+...+.+++.+++++.+++.+.+.+.+|.++++.|++.|..++.+++....++|...+.+.+...+++ +
T Consensus 77 g~~~na~t~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~ 156 (445)
T 3ami_A 77 GGRDNAFTTRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAH 156 (445)
T ss_dssp TCEEEEEECSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSS
T ss_pred CCccccccCCCeEEEEEECCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCC
Confidence 567888888888888899999999999999999999999999999999999999999333578999999999888885 3
Q ss_pred CCC--hhHHHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHhcc
Q 029273 85 TWP--WMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFK 142 (196)
Q Consensus 85 ~~~--~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~ 142 (196)
++. .....+.|+++|.+++++|+++++.+.++.++|+||++.+++.++++...+.++.
T Consensus 157 p~~~~~~G~~e~l~~it~~~l~~f~~~~y~p~n~~l~vvGd~d~~~~~~~v~~~f~~~~~ 216 (445)
T 3ami_A 157 PYRVPVIGWMNDIQNMTAQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLAR 216 (445)
T ss_dssp GGGSCTTCCHHHHHHCCHHHHHHHHHHHCSGGGEEEEEEESCCHHHHHHHHHHTGGGSCC
T ss_pred CCCCCCCCCHHHHhhCCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHhcCCCC
Confidence 333 3345677888999999999999999999999999999999999999887766643
No 12
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=99.53 E-value=7.5e-14 Score=115.57 Aligned_cols=136 Identities=11% Similarity=0.063 Sum_probs=120.1
Q ss_pred ecceEEEeecCceeEEEEccccchHHHHHHHHHHHhccCCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhcC-
Q 029273 5 AGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD- 83 (196)
Q Consensus 5 Agl~~~~~~~~~g~~i~v~G~s~kl~~~l~~v~~~l~~~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~- 83 (196)
.|.+++.+.+.+...+.+++.+++++.+++.+.+.+.+|.+++++|++.|+.++.++++. .++|...+...+...+++
T Consensus 71 ~G~~~na~t~~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~-~~~p~~~~~~~~~~~~~~~ 149 (421)
T 3hdi_A 71 IGGQVNAFTSKEYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEIKMV-DDTPDDIVHDLLSSATYGK 149 (421)
T ss_dssp TTSCEEEEECSSCEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHTT
T ss_pred hCCceeeeeccceEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh-hCCHHHHHHHHHHHHhcCC
Confidence 367788888888999999999999999999999999999999999999999999999987 579999999999888885
Q ss_pred CCC--ChhHHHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHhcc
Q 029273 84 QTW--PWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFK 142 (196)
Q Consensus 84 ~~~--~~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~ 142 (196)
+++ +..+..+.|+++|.+|+++|+++++.+.++.+.|+||++ +++.++++...+.|+.
T Consensus 150 ~p~~~~~~G~~~~l~~it~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~v~~~f~~~~~ 209 (421)
T 3hdi_A 150 HSLGYPILGTVETLNSFNEGMLRHYMDRFYTGDYVVISVAGNVH-DELIDKIKETFSQVKP 209 (421)
T ss_dssp SGGGSCTTCCHHHHHHCCHHHHHHHHHHHSSTTTEEEEEEESCC-HHHHHHHHHHTTSSCC
T ss_pred CCCCCCCcCCHHHHHhCCHHHHHHHHHHhcCcccEEEEEEeCCC-HHHHHHHHHHhcCCCC
Confidence 333 333456788889999999999999999999999999999 9999998887766643
No 13
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=99.52 E-value=1.2e-13 Score=114.91 Aligned_cols=136 Identities=7% Similarity=0.016 Sum_probs=119.5
Q ss_pred cceEEEeecCceeEEEEccccchHHHHHHHHHHHhccCCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhcC-C
Q 029273 6 GLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD-Q 84 (196)
Q Consensus 6 gl~~~~~~~~~g~~i~v~G~s~kl~~~l~~v~~~l~~~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~-~ 84 (196)
|.+++.+.+.+...+.+++.+++++.+++.+.+.+.+|.+++++|++.|+.++.+++.. .++|...+...+...+++ +
T Consensus 77 g~~~na~t~~~~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (443)
T 1hr6_B 77 GSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEV-DKMYDEVVFDHLHEITYKDQ 155 (443)
T ss_dssp TCEEEEEECSSEEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTTS
T ss_pred CCeEEEEECCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh-hCChHHHHHHHHHHHhcCCC
Confidence 66788888888999999999999999999999999999999999999999999999987 579999999998888875 3
Q ss_pred CCC--hhHHHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHhcc
Q 029273 85 TWP--WMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFK 142 (196)
Q Consensus 85 ~~~--~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~ 142 (196)
++. .....+.|+++|.+++++|+++++.+.++.+.|+||++.+++.++++...+.|..
T Consensus 156 ~~~~~~~g~~~~i~~~~~~~l~~f~~~~y~~~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~ 215 (443)
T 1hr6_B 156 PLGRTILGPIKNIKSITRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPK 215 (443)
T ss_dssp GGGSCSSCCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCcCCHHHHhhCCHHHHHHHHHhcCcCCCEEEEEEcCCCHHHHHHHHHHHhcCCCC
Confidence 332 2235677788999999999999999999999999999999999998887776653
No 14
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=99.52 E-value=3.2e-13 Score=112.76 Aligned_cols=136 Identities=11% Similarity=0.087 Sum_probs=119.7
Q ss_pred cceEEEeecCceeEEEEccccchHHHHHHHHHHHhccCCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhcC-C
Q 029273 6 GLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD-Q 84 (196)
Q Consensus 6 gl~~~~~~~~~g~~i~v~G~s~kl~~~l~~v~~~l~~~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~-~ 84 (196)
|.+++...+.++..+.+++.+++++.+++.+.+.+.+|.+++++|++.|+.++.+++.. .++|...+...+...+++ +
T Consensus 83 G~~~na~t~~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~-~~~~~~~~~~~~~~~~~~~~ 161 (446)
T 1pp9_A 83 GAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQEN-DTSMRDVVFNYLHATAFQGT 161 (446)
T ss_dssp TCEEEEEECSSCEEEEEEEEGGGHHHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTTS
T ss_pred CCEEEEEEcCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh-hcCHHHHHHHHHHHHhcCCC
Confidence 66788888888999999999999999999999999999999999999999999999987 579999999988888875 3
Q ss_pred CCC--hhHHHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHhcc
Q 029273 85 TWP--WMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFK 142 (196)
Q Consensus 85 ~~~--~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~ 142 (196)
+|. .....+.|++++.++|++|+++++.+.++.+.|+||++.+++.++++...+.+..
T Consensus 162 ~~~~~~~G~~~~l~~~~~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~ 221 (446)
T 1pp9_A 162 PLAQSVEGPSENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSG 221 (446)
T ss_dssp GGGSCSSCCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCS
T ss_pred CCCCCCcCCHHHHHhCCHHHHHHHHHhccCCCCEEEEEEcCCCHHHHHHHHHHHhccCCC
Confidence 333 2345677788999999999999999999999999999999999998887776643
No 15
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=99.27 E-value=1.7e-11 Score=103.94 Aligned_cols=133 Identities=11% Similarity=-0.023 Sum_probs=104.8
Q ss_pred cceEEEeecCceeEEEEcccc---chHHHHHHHHHHHhccCCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhc
Q 029273 6 GLDYGINHTESGFEVTVVGYN---HKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQ 82 (196)
Q Consensus 6 gl~~~~~~~~~g~~i~v~G~s---~kl~~~l~~v~~~l~~~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~ 82 (196)
|.+++.+.+.+...+.+++.+ ++++..++.+.+.+.+|.|++++|++.|..++++++.. .++|...++. ..++
T Consensus 102 G~~~na~t~~d~t~y~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~~~~~~~~~-~~~~~~~~~~---~~~~ 177 (492)
T 3go9_A 102 RPLPPAITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAGNLAVSEQTVNAALNTATDPIATF-PQNIQEPWWR---YRLK 177 (492)
T ss_dssp SCCCSEEECSSCEEEEEEECTTCHHHHHHHHHHHHHHHHCCCCSHHHHHHHHTCSSCCEEES-SSCTTCHHHH---HHTT
T ss_pred CCCcceEeCCCeEEEEEECCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc-ccchhhHHHH---HHhc
Confidence 556677777788888888888 78999999999999999999999999998777777665 3566554432 2222
Q ss_pred C-CCCChhHHHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHhcc
Q 029273 83 D-QTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFK 142 (196)
Q Consensus 83 ~-~~~~~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~ 142 (196)
. +.+...-..+.++++|.+|+++|+++++.+.++.++|+||++.+++.++++..++.|+.
T Consensus 178 ~~~~~~~~~~~~~i~~it~~dL~~fy~~~Y~p~n~~l~vvGdvd~~~~~~~i~~~f~~~~~ 238 (492)
T 3go9_A 178 GSSLIGHDPGQPVTQPVDVEKLKQFYQQWYTPDAMTLYVVGNVDSRSIAAQISKAFSELKG 238 (492)
T ss_dssp TSTTTTCCTTCCCCSSCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCC
T ss_pred cCCcccCCCchhhhhcCCHHHHHHHHHHhcCcCceEEEEEcCCCHHHHHHHHHHHhhcCCC
Confidence 2 11111101267899999999999999999999999999999999999999988777754
No 16
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.26 E-value=2.2e-11 Score=111.01 Aligned_cols=137 Identities=11% Similarity=0.046 Sum_probs=112.7
Q ss_pred ceecceE-EE--eecC-----ceeEEEEccccchHHHHHHHHHHHhccCCcChh-hHHHHHHHHHHHhhcccccChHHHH
Q 029273 3 MVAGLDY-GI--NHTE-----SGFEVTVVGYNHKLRILLETIFQKIAQFKVKPD-RFSVIKEMVTKEYHNNKFLQPFQLA 73 (196)
Q Consensus 3 ~~Agl~~-~~--~~~~-----~g~~i~v~G~s~kl~~~l~~v~~~l~~~~~~~~-~F~~~k~~~~~~l~n~~~~~P~~~a 73 (196)
..+|+++ ++ +.+. .++.+++++++++++.+++.+.+.+.+|.++++ +|+++|++++.++++....+|+..|
T Consensus 621 ~~ggl~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~e~l~~p~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~A 700 (995)
T 2fge_A 621 KTGGISVYPLTSSVRGKDEPCSKIIVRGKSMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVSQSRARMENRLRGSGHGIA 700 (995)
T ss_dssp HSSEEEEEEEEEEETTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred hcCceEeeccccccCccccccceEEEEEEEehhhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHhhhccHHHHH
Confidence 3556677 33 5444 789999999999999999999999999999998 9999999999999998656889999
Q ss_pred HHHHHHhhcCCC-CC-----------hhHHH----hhCCCCCHHHHHHHHHHhhhhhheeeEeecCCCh-HHHHHHHHHH
Q 029273 74 MYYCSLILQDQT-WP-----------WMEEL----EVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIES-NEAGSIIQYI 136 (196)
Q Consensus 74 ~~~~~~ll~~~~-~~-----------~~~~~----~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~-~~a~~~~~~~ 136 (196)
...+..++.+.. +. ..++. +.++.+ .++|++|+++++.+.+++++|+||++. +++.++++.+
T Consensus 701 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~~l~~~~~e~~~~i-~~~L~~~~~~~~~~~~~~~~v~Gd~~~~~~~~~~~~~~ 779 (995)
T 2fge_A 701 AARMDAMLNIAGWMSEQMGGLSYLEFLHTLEKKVDEDWEGI-SSSLEEIRRSLLARNGCIVNMTADGKSLTNVEKSVAKF 779 (995)
T ss_dssp HHHHHHTTCHHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHCCSTTCEEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHhCChhHHHHHHHccHHHHHHHHHHHHhhhcCHHHH-HHHHHHHHHHHcCcCCcEEEEEeCHHHHHHHHHHHHHH
Confidence 988877755322 11 11222 557889 999999999999999999999999995 8888888877
Q ss_pred HHHh
Q 029273 137 EDVF 140 (196)
Q Consensus 137 ~~~l 140 (196)
.+.+
T Consensus 780 ~~~l 783 (995)
T 2fge_A 780 LDLL 783 (995)
T ss_dssp HHTS
T ss_pred HHhh
Confidence 7766
No 17
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.23 E-value=6.4e-11 Score=107.26 Aligned_cols=137 Identities=12% Similarity=-0.025 Sum_probs=119.5
Q ss_pred ecceEEEeecCceeEEEEccccchHHHHHHHHHHHhccCCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhcC-
Q 029273 5 AGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD- 83 (196)
Q Consensus 5 Agl~~~~~~~~~g~~i~v~G~s~kl~~~l~~v~~~l~~~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~- 83 (196)
.|.+++.+.+.+.....++..+++++..|+.+.+.+.+|.++++.|++.|..+..+++.. .++|...+...+..++++
T Consensus 91 ~Gg~~NA~T~~d~T~y~~~~~~~~l~~~L~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~~-~~~~~~~~~~~~~~~~~~~ 169 (939)
T 1q2l_A 91 HGGSHNASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMA-RTRDGMRMAQVSAETINPA 169 (939)
T ss_dssp TTCEEEEEECSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCSTTHHHHHHHHHHHHHHH-TTSHHHHHHHHHHHSSCTT
T ss_pred cCCcceEEECCCcEEEEEEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHhcCCC
Confidence 477888888888888888889999999999999999999999999999999999999986 578988898888888875
Q ss_pred CCCC--hhHHHhhCCC----CCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHhcc
Q 029273 84 QTWP--WMEELEVLPH----LEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFK 142 (196)
Q Consensus 84 ~~~~--~~~~~~~l~~----it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~ 142 (196)
++|. ..+..+.|++ +|.++|++|+++++++.++.+.|+||++.+++.++++..++.++.
T Consensus 170 ~p~~~~~~G~~~~l~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~~~f~~~~~ 234 (939)
T 1q2l_A 170 HPGSKFSGGNLETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPN 234 (939)
T ss_dssp SGGGSCCSCCHHHHSCBTTBCHHHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHHHTGGGSCC
T ss_pred CCCccCCCCCHHHHhcCCCchHHHHHHHHHHhccCHhheEEEEEcCCCHHHHHHHHHHHhhhhcc
Confidence 3332 3345677777 999999999999999999999999999999999998887776654
No 18
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=99.12 E-value=3.6e-10 Score=104.42 Aligned_cols=136 Identities=8% Similarity=0.020 Sum_probs=115.9
Q ss_pred cceEEEeecCceeEEEEcccc-chHHHHHHHHHHHhccCCcChhh--HHHH-----------------------------
Q 029273 6 GLDYGINHTESGFEVTVVGYN-HKLRILLETIFQKIAQFKVKPDR--FSVI----------------------------- 53 (196)
Q Consensus 6 gl~~~~~~~~~g~~i~v~G~s-~kl~~~l~~v~~~l~~~~~~~~~--F~~~----------------------------- 53 (196)
|...+...+.+.....+...+ +++..+++.+++.+.+|.++++. |...
T Consensus 157 G~~lNA~T~~D~T~Y~~~~~~~~~l~~~L~l~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~ 236 (1193)
T 3s5m_A 157 HTHLNAYTFNDRTVYMAGSMNNKDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSF 236 (1193)
T ss_dssp EEEEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEE
T ss_pred CceEEeEEcCCeEEEEEEecCHHHHHHHHHHHHHHHhCCCCccccchhhhhhhhhhhhccchhhhccccccccccchhhH
Confidence 556677767778888888887 88999999999999999988877 8765
Q ss_pred HHHHHHHhhcccccChHHHHHHHHHHhhcC-CCC--ChhHHHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHH
Q 029273 54 KEMVTKEYHNNKFLQPFQLAMYYCSLILQD-QTW--PWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAG 130 (196)
Q Consensus 54 k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~-~~~--~~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~ 130 (196)
|..+..+++.. .++|..++.+.+...+++ ++| ...+..+.|+++|++||++|+++++.+.++.++|+||++.+++.
T Consensus 237 k~vV~~E~k~~-~~~p~~~~~~~l~~~lf~~hpY~~~~~G~~e~I~~lt~edl~~F~~~~Y~P~Na~l~v~Gdid~~~~~ 315 (1193)
T 3s5m_A 237 NGIVYNEMKGA-LSSPLEDLYHEEMKYMFPDNVHSNNSGGDPKEITNLTYEEFKEFYYKNYNPKKVKVFFFSKNNPTELL 315 (1193)
T ss_dssp ECHHHHHHHHH-TTCHHHHHHHHHHHHHCTTSGGGSCTTCCHHHHTTCCHHHHHHHHHHHSCTTTCEEEEEESSCTHHHH
T ss_pred HHHHHHHHHHh-hCCHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHhhCCHHHHHHHHHHhcCccceEEEEEecCCHHHHH
Confidence 45788888887 679999999999999986 333 34456788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 029273 131 SIIQYIEDVFFK 142 (196)
Q Consensus 131 ~~~~~~~~~l~~ 142 (196)
++++...+.|..
T Consensus 316 ~~v~~~f~~~~~ 327 (1193)
T 3s5m_A 316 NFVDQYLGQLDY 327 (1193)
T ss_dssp HHHHHHHTTCCG
T ss_pred HHHHHHhccCCC
Confidence 999988877753
No 19
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=99.08 E-value=8.6e-10 Score=100.42 Aligned_cols=137 Identities=9% Similarity=-0.038 Sum_probs=115.6
Q ss_pred ecceEEEeecCceeEEEEccccchHHHHHHHHHHHhccCCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhcC-
Q 029273 5 AGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD- 83 (196)
Q Consensus 5 Agl~~~~~~~~~g~~i~v~G~s~kl~~~l~~v~~~l~~~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~- 83 (196)
.|..++...+.+.....+...++++..+++.+.+.+.+|.++++.|++.|..+..+++.. .++|...+...+..++++
T Consensus 105 ~Gg~~NA~T~~d~T~y~~~~~~~~l~~~l~~~~d~~~~p~f~~~~~~~E~~~V~~E~~~~-~~~~~~~~~~~~~~~~~~~ 183 (990)
T 3cww_A 105 HAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKN-VMNDAWRLFQLEKATGNPK 183 (990)
T ss_dssp TTCEEEEEECSSCEEEEEEEEGGGHHHHHHHHHGGGTCBCCCHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHTSCTT
T ss_pred cCCceeEEECCCceEEEEEeCHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHhc-cCChHHHHHHHHHHhcCCC
Confidence 355677777778888888889999999999999999999999999999999999999986 568888888888887774
Q ss_pred CCCC--hhHHHhhCCCC-------CHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHhcc
Q 029273 84 QTWP--WMEELEVLPHL-------EAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFK 142 (196)
Q Consensus 84 ~~~~--~~~~~~~l~~i-------t~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~ 142 (196)
++|. ..+..+.|..+ |.++|++|+++++.+.++.+.|+||++.+++.++++..++.+..
T Consensus 184 ~py~~~~~G~~~~l~~~~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~ 251 (990)
T 3cww_A 184 HPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVEN 251 (990)
T ss_dssp SGGGCCCSCCHHHHTHHHHHTTCCHHHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHHHHHTTSCC
T ss_pred CCcccCCCCCHHHHhhccccccchHHHHHHHHHHHhCCHhheEEEEEcCCCHHHHHHHHHHHhcCCcc
Confidence 3332 23345666666 99999999999999999999999999999999999887776654
No 20
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.03 E-value=1e-09 Score=100.06 Aligned_cols=135 Identities=13% Similarity=0.100 Sum_probs=112.3
Q ss_pred cceEEEeecCceeEEEEccc-cchHHHHHHHHHHHhccCCc--ChhhHHHH---------------HHHHHHHhhccccc
Q 029273 6 GLDYGINHTESGFEVTVVGY-NHKLRILLETIFQKIAQFKV--KPDRFSVI---------------KEMVTKEYHNNKFL 67 (196)
Q Consensus 6 gl~~~~~~~~~g~~i~v~G~-s~kl~~~l~~v~~~l~~~~~--~~~~F~~~---------------k~~~~~~l~n~~~~ 67 (196)
|.+.+...+.+.....+..- .+.+..++..+.+.+.+|.+ +++.|++. |..+..+++.. .+
T Consensus 105 g~~~NA~T~~d~T~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~-~~ 183 (995)
T 2fge_A 105 HTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGV-YS 183 (995)
T ss_dssp EEEECCEECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTSSHHHHHHTCEEECSCTTSCCEEECHHHHHHHHH-TT
T ss_pred CCCceeeECCCceEEEEecCCHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhhhhhhcccccccccccchHHHHHHhh-hC
Confidence 44455555556665565543 46899999999999999999 99999998 77899999886 57
Q ss_pred ChHHHHHHHHHHhhcC-CCC--ChhHHHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHhc
Q 029273 68 QPFQLAMYYCSLILQD-QTW--PWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFF 141 (196)
Q Consensus 68 ~P~~~a~~~~~~ll~~-~~~--~~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~ 141 (196)
+|..++.+.+...+++ ++| ...+..+.|+++|.++|++|+++++.+.++.+.|+||++.+++.++++..++.+.
T Consensus 184 ~p~~~~~~~~~~~~~~~~py~~~~~G~~~~i~~~t~~~l~~f~~~~Y~p~n~~l~v~Gd~d~~~~~~~i~~~f~~~~ 260 (995)
T 2fge_A 184 QPDNILGRIAQQALSPENTYGVDSGGDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLSEYLDMFE 260 (995)
T ss_dssp SHHHHHHHHHHHHHCTTSGGGSCTTCCTTTGGGCCHHHHHHHHHHHSSGGGEEEEEEESSCHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHhCCCCCCCCCCCCChHhhhhcCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHHhhCC
Confidence 8999999999999985 443 3445678999999999999999999999999999999999999999988766664
No 21
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=98.67 E-value=3.3e-07 Score=67.88 Aligned_cols=105 Identities=7% Similarity=-0.003 Sum_probs=83.6
Q ss_pred eEEEEccccc-hHHHHHHHHHHHhcc---CCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhcCCCCChhHHHh
Q 029273 18 FEVTVVGYNH-KLRILLETIFQKIAQ---FKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELE 93 (196)
Q Consensus 18 ~~i~v~G~s~-kl~~~l~~v~~~l~~---~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~~~~~~~~~~~ 93 (196)
+.+.+.+-.+ +...+++.+.+.+.. -.+++++|+++|.+++.++... .++|...+.......+++......+..+
T Consensus 85 ~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~-~~~~~~~a~~l~~~~~~g~~~~~~~~~~ 163 (197)
T 3ih6_A 85 AMFGAQLQPGMDQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQT-YADPEKVGVALSEAIASGDWRLFFLQRD 163 (197)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHH-HTSHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5566655455 477777777666655 4589999999999999999876 5789999988887777643334567889
Q ss_pred hCCCCCHHHHHHHHHHhhhhhheeeEeecC
Q 029273 94 VLPHLEAEDLAKFVPMMLSRTFLECYIAGN 123 (196)
Q Consensus 94 ~l~~it~~dl~~f~~~~~~~~~~~~lv~GN 123 (196)
.++++|.+|++++.+++|.+.+..+++.|-
T Consensus 164 ~i~~vT~~dv~~~a~~~l~~~~~~~~~~~P 193 (197)
T 3ih6_A 164 RVREAKLDDVQRAAVAYLVRSNRTEGRYIP 193 (197)
T ss_dssp HHHTCCHHHHHHHHHHHSSGGGCEEEEECC
T ss_pred HHHhCCHHHHHHHHHHhCCccCeEEEEEeC
Confidence 999999999999999999988888888774
No 22
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=98.45 E-value=1.1e-06 Score=72.34 Aligned_cols=108 Identities=8% Similarity=-0.009 Sum_probs=85.2
Q ss_pred eeEEEEccccchHHHHHHHHHHHhcc---CCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhcCCCCC-hhHHH
Q 029273 17 GFEVTVVGYNHKLRILLETIFQKIAQ---FKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWP-WMEEL 92 (196)
Q Consensus 17 g~~i~v~G~s~kl~~~l~~v~~~l~~---~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~~~~~-~~~~~ 92 (196)
.+.+.+..-.++...+++.+.+.+.. -.+++++|+++|..++.++... .+.|...+.......+++..+. .++..
T Consensus 311 ~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (434)
T 3gwb_A 311 PFMINLQTRAEMSEGTLKLVQDVFAEYLKNGPTQKELDDAKRELAGSFPLS-TASNADIVGQLGAMGFYNLPLSYLEDFM 389 (434)
T ss_dssp EEEEEEEEEGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---C-CCCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred eEEEEEecchhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhh-ccCHHHHHHHHHHHHHcCCCccHHHHHH
Confidence 45666666666777777777666655 3589999999999999999876 5789999988877777665555 56788
Q ss_pred hhCCCCCHHHHHHHHHHhhhhhheeeEeecCCC
Q 029273 93 EVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIE 125 (196)
Q Consensus 93 ~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~ 125 (196)
+.++++|.+|++++.++++.+.+..++++|+-.
T Consensus 390 ~~i~~vt~~dv~~~a~~~l~~~~~~~~vvg~~~ 422 (434)
T 3gwb_A 390 RQSQELTVEQVKAAMNKHLNVDKMVIVSAGPTV 422 (434)
T ss_dssp HHHHHCCHHHHHHHHHHHCCGGGCEEEEEECCC
T ss_pred HHHHhCCHHHHHHHHHHhcChhhEEEEEEcCcc
Confidence 999999999999999999999999999999844
No 23
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=98.40 E-value=2.7e-06 Score=69.93 Aligned_cols=106 Identities=9% Similarity=0.027 Sum_probs=84.3
Q ss_pred eEEEEccccchHHHHHHHHHHHhcc---CCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhc-CCCCChhHHHh
Q 029273 18 FEVTVVGYNHKLRILLETIFQKIAQ---FKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQ-DQTWPWMEELE 93 (196)
Q Consensus 18 ~~i~v~G~s~kl~~~l~~v~~~l~~---~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~-~~~~~~~~~~~ 93 (196)
+.+.+..=.++...+++.+.+.+.. ..+++++|+++|..++.++... .+.|...+.......+. ......++..+
T Consensus 296 ~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (421)
T 3hdi_A 296 LTIYAGTGHDQLDDLVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLS-LESTNSRMSRNGKNELLLKKHRSLDEMIE 374 (421)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTSCCCCHHHHHH
T ss_pred EEEEEEeCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 4555555556777777777666554 4699999999999999999876 57888888776554444 44566788999
Q ss_pred hCCCCCHHHHHHHHHHhhhhhheeeEeecCCC
Q 029273 94 VLPHLEAEDLAKFVPMMLSRTFLECYIAGNIE 125 (196)
Q Consensus 94 ~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~ 125 (196)
.++++|.+|++++.++++ +....+.++|+.+
T Consensus 375 ~i~~vt~~dv~~~a~~~~-~~~~~~~vvgp~~ 405 (421)
T 3hdi_A 375 QINAVQKQDVSRLAKILL-SASPSISLINANG 405 (421)
T ss_dssp HHHHCCHHHHHHHHHHHT-TSCCEEEEEESSC
T ss_pred HHHcCCHHHHHHHHHHHc-ccCcEEEEECchh
Confidence 999999999999999999 8899999999854
No 24
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=98.39 E-value=1.8e-06 Score=70.75 Aligned_cols=106 Identities=10% Similarity=0.039 Sum_probs=87.0
Q ss_pred eEEEEccccchHHHHHHHHHHHhccC---CcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhc-CCCCChhHHHh
Q 029273 18 FEVTVVGYNHKLRILLETIFQKIAQF---KVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQ-DQTWPWMEELE 93 (196)
Q Consensus 18 ~~i~v~G~s~kl~~~l~~v~~~l~~~---~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~-~~~~~~~~~~~ 93 (196)
+.+.+..-.++...+++.+.+.+... .+++++++++|.+++.++... .++|...+.......+. ....+.++.++
T Consensus 296 ~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (406)
T 3eoq_A 296 FHAYVQADPARKGEVLAVLQEELDRLGREGVGEEEVERAKTPLATGLVFA-GETPMQRLFHLGMEYLYTGRYLSLEEVKA 374 (406)
T ss_dssp EEEEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHSSCCCHHHHHH
T ss_pred EEEEEEeCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 55666665667888887777666554 599999999999999999876 57888888888777766 45566788999
Q ss_pred hCCCCCHHHHHHHHHHhhhhhheeeEeecCCC
Q 029273 94 VLPHLEAEDLAKFVPMMLSRTFLECYIAGNIE 125 (196)
Q Consensus 94 ~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~ 125 (196)
.++++|.+|+++..++++.+... ++++|+..
T Consensus 375 ~i~~vt~~dv~~~a~~~l~~~~~-~~vvGp~~ 405 (406)
T 3eoq_A 375 RVQRVTSREVNALLERGFLEKGL-YYLVLPHG 405 (406)
T ss_dssp HHHHCCHHHHHHHHHTTTTTSCE-EEEEECCC
T ss_pred HHHhCCHHHHHHHHHHhcCcccE-EEEECCCC
Confidence 99999999999999999988888 99999753
No 25
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=98.36 E-value=2.7e-06 Score=69.94 Aligned_cols=107 Identities=7% Similarity=0.016 Sum_probs=85.1
Q ss_pred eEEEEccccchHHHHHHHHHHHhc---cCCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhcCCCCC-hhHHHh
Q 029273 18 FEVTVVGYNHKLRILLETIFQKIA---QFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWP-WMEELE 93 (196)
Q Consensus 18 ~~i~v~G~s~kl~~~l~~v~~~l~---~~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~~~~~-~~~~~~ 93 (196)
+.+.+..-.++...+++.+.+.+. +..+++++|+++|..++.++... .+.|...+.......+.+..+. .++..+
T Consensus 305 ~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (424)
T 3amj_B 305 FQIGFETRAEKADEAVQVANDTLDAFLREGPTDAELQAAKDNLINGFALR-LDSNAKILGQVAVIGYYGLPLDYLDHYTE 383 (424)
T ss_dssp EEEEEEEESTTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSGGG-GSSHHHHHHHHHHHHHTTCCTTTTTSHHH
T ss_pred EEEEEEeCcccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhHh-cCCHHHHHHHHHHHHHcCCChhHHHHHHH
Confidence 566666555677777777666555 44699999999999999999876 4688888888777666655554 456789
Q ss_pred hCCCCCHHHHHHHHHHhhhhhheeeEeecCCC
Q 029273 94 VLPHLEAEDLAKFVPMMLSRTFLECYIAGNIE 125 (196)
Q Consensus 94 ~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~ 125 (196)
.++++|.+|++++.++++.+.+..++++|+-.
T Consensus 384 ~i~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~ 415 (424)
T 3amj_B 384 RVQAVTVEQVREAFARHVKRENLITVVVGGKA 415 (424)
T ss_dssp HHHTCCHHHHHHHHHHHCCGGGCEEEEEECC-
T ss_pred HHHcCCHHHHHHHHHHhcCccceEEEEECChh
Confidence 99999999999999999999899999999854
No 26
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=98.33 E-value=5.8e-06 Score=67.94 Aligned_cols=107 Identities=12% Similarity=0.134 Sum_probs=83.2
Q ss_pred eEEEEcccc-chHHHHHHHHHHHhccC--CcChhhHHHHHHHHHHHhhc--ccccChHHHHHHHHHHhh-cCCCCChhHH
Q 029273 18 FEVTVVGYN-HKLRILLETIFQKIAQF--KVKPDRFSVIKEMVTKEYHN--NKFLQPFQLAMYYCSLIL-QDQTWPWMEE 91 (196)
Q Consensus 18 ~~i~v~G~s-~kl~~~l~~v~~~l~~~--~~~~~~F~~~k~~~~~~l~n--~~~~~P~~~a~~~~~~ll-~~~~~~~~~~ 91 (196)
+.+.+.+-. ++...+++.+.+.+... .+++++|+++|..++.++.. . .+.|...+.......+ .+.....++.
T Consensus 302 ~~i~~~~~~~~~~~~~~~~~~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~ 380 (431)
T 3cx5_A 302 WGFSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYE-SGNPVNDANLLGAEVLIKGSKLSLGEA 380 (431)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred EEEEEeeCchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhc-cCCHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 455555544 67777666655544332 79999999999999999988 6 4688888887776554 5555557788
Q ss_pred HhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCC
Q 029273 92 LEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIE 125 (196)
Q Consensus 92 ~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~ 125 (196)
.+.++++|.+|++++.++++.+.+..+.++|+.+
T Consensus 381 ~~~i~~vt~~dv~~~a~~~l~~~~~~~~v~g~~~ 414 (431)
T 3cx5_A 381 FKKIDAITVKDVKAWAGKRLWDQDIAIAGTGQIE 414 (431)
T ss_dssp HHHHHHCCHHHHHHHHHHHTTTCCCEEEEEESCT
T ss_pred HHHHhcCCHHHHHHHHHHHcccCCcEEEEEcchh
Confidence 8999999999999999999988788899999864
No 27
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=98.31 E-value=1e-05 Score=66.91 Aligned_cols=107 Identities=11% Similarity=0.141 Sum_probs=84.4
Q ss_pred eEEEEccc--cchHHHHHHHHHHHh---ccCCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHh-hcCCCCChhHH
Q 029273 18 FEVTVVGY--NHKLRILLETIFQKI---AQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLI-LQDQTWPWMEE 91 (196)
Q Consensus 18 ~~i~v~G~--s~kl~~~l~~v~~~l---~~~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~l-l~~~~~~~~~~ 91 (196)
+.+.+..- .++...+++.+.+.+ .+..+++++|+++|..++.++... .+.|...+....... .++...+..+.
T Consensus 317 ~~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~ 395 (443)
T 1hr6_B 317 WGMYIVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLS-LDGSTAIVEDIGRQVVTTGKRLSPEEV 395 (443)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTT-CCSHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred EEEEEEecCChhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCcCCHHHH
Confidence 44555443 457777777766655 555599999999999999999887 568888887776665 45655667788
Q ss_pred HhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCC
Q 029273 92 LEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIE 125 (196)
Q Consensus 92 ~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~ 125 (196)
.+.++++|.+|++++.++++.+.+..+.++|+..
T Consensus 396 ~~~i~~vt~~dv~~~a~~~l~~~~~~~~v~g~~~ 429 (443)
T 1hr6_B 396 FEQVDKITKDDIIMWANYRLQNKPVSMVALGNTS 429 (443)
T ss_dssp HHHHHTCCHHHHHHHHHHHSSSCCEEEEEEECGG
T ss_pred HHHHHhCCHHHHHHHHHHHhccCCcEEEEECCcc
Confidence 8999999999999999999988888999999853
No 28
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=98.30 E-value=7.4e-06 Score=67.97 Aligned_cols=107 Identities=7% Similarity=0.006 Sum_probs=85.2
Q ss_pred eEEEEccccchHHHHHHHHHHHhccC--CcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHh-hcCCCCChhHHHhh
Q 029273 18 FEVTVVGYNHKLRILLETIFQKIAQF--KVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLI-LQDQTWPWMEELEV 94 (196)
Q Consensus 18 ~~i~v~G~s~kl~~~l~~v~~~l~~~--~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~l-l~~~~~~~~~~~~~ 94 (196)
+.+.+..=.++...+++.+.+.+... .+++++++++|..++.++... .+.|...+....... +++...+.++..+.
T Consensus 320 ~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~t~~el~~ak~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 398 (446)
T 1pp9_A 320 LGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSH-LDGTTPVCEDIGRSLLTYGRRIPLAEWESR 398 (446)
T ss_dssp EEEEEEECTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH-SCSHHHHHHHHHHHHHHTSSCCCHHHHHHH
T ss_pred EEEEEEECHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 55555554567877777776655432 499999999999999999876 578888888766655 55655677788899
Q ss_pred CCCCCHHHHHHHHHHhhhhhheeeEeecCCC
Q 029273 95 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIE 125 (196)
Q Consensus 95 l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~ 125 (196)
++++|.+|++++.++++.+....+.++|+.+
T Consensus 399 i~~vt~edv~~~a~~~~~~~~~~~~~~g~~~ 429 (446)
T 1pp9_A 399 IAEVDARVVREVCSKYFYDQCPAVAGFGPIE 429 (446)
T ss_dssp HHTCCHHHHHHHHHHHTTTCCCEEEEEESCT
T ss_pred HHcCCHHHHHHHHHHHcCCCCcEEEEECCcc
Confidence 9999999999999999988788999999865
No 29
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=98.29 E-value=1e-05 Score=66.62 Aligned_cols=105 Identities=10% Similarity=0.065 Sum_probs=83.4
Q ss_pred eEEEEccccchHHHHHHHHHHHhcc---CCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhc-CCCCChhHHHh
Q 029273 18 FEVTVVGYNHKLRILLETIFQKIAQ---FKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQ-DQTWPWMEELE 93 (196)
Q Consensus 18 ~~i~v~G~s~kl~~~l~~v~~~l~~---~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~-~~~~~~~~~~~ 93 (196)
+.+.+.+=.++...+++.+.+.+.. ..+++++|+++|..++.++... .+.|...+.......+. ......++..+
T Consensus 322 ~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (439)
T 1pp9_B 322 FGFYTISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMS-VESSEGFLDEVGSQALAAGSYTPPSTVLQ 400 (439)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHH-TSSHHHHHHHHHHHHHHHSSCCCHHHHHH
T ss_pred EEEEEEeCHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 4555555455787777777666554 5699999999999999998876 46888888877766665 44445778899
Q ss_pred hCCCCCHHHHHHHHHHhhhhhheeeEeecCC
Q 029273 94 VLPHLEAEDLAKFVPMMLSRTFLECYIAGNI 124 (196)
Q Consensus 94 ~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi 124 (196)
.++++|.+|++++.++++. .+..+.++|+.
T Consensus 401 ~i~~vt~~dv~~~a~~~~~-~~~~~~v~g~~ 430 (439)
T 1pp9_B 401 QIDAVADADVINAAKKFVS-GRKSMAASGNL 430 (439)
T ss_dssp HHHTCCHHHHHHHHHHHHH-SCEEEEEEECG
T ss_pred HHhcCCHHHHHHHHHHHhc-CCceEEEECCc
Confidence 9999999999999999998 68888999984
No 30
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=98.29 E-value=1.2e-05 Score=67.44 Aligned_cols=106 Identities=13% Similarity=0.190 Sum_probs=85.7
Q ss_pred eEEEEccccchHHHHHHHHHHHhccC------CcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHh-hcCCCCChhH
Q 029273 18 FEVTVVGYNHKLRILLETIFQKIAQF------KVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLI-LQDQTWPWME 90 (196)
Q Consensus 18 ~~i~v~G~s~kl~~~l~~v~~~l~~~------~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~l-l~~~~~~~~~ 90 (196)
+.+.+..-.+++...++.+.+.+... .+++++|+++|..++.++... .+.|...+......+ .++...+.++
T Consensus 316 ~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~ 394 (475)
T 1hr6_A 316 FGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMN-LESKLVELEDMGRQVLMHGRKIPVNE 394 (475)
T ss_dssp EEEEEEECGGGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred EEEEEEeCHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHhcCCCCCHHH
Confidence 56666665668888888777766553 489999999999999999875 568888888777654 4555566778
Q ss_pred HHhhCCCCCHHHHHHHHHHhhhh---------hheeeEeecCC
Q 029273 91 ELEVLPHLEAEDLAKFVPMMLSR---------TFLECYIAGNI 124 (196)
Q Consensus 91 ~~~~l~~it~~dl~~f~~~~~~~---------~~~~~lv~GNi 124 (196)
..+.++++|.+|++++.++++.+ ....+.++|+.
T Consensus 395 ~~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~ 437 (475)
T 1hr6_A 395 MISKIEDLKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDR 437 (475)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCG
T ss_pred HHHHHHcCCHHHHHHHHHHHhhhccccccccCCCcEEEEECCc
Confidence 89999999999999999999987 47889999986
No 31
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=97.99 E-value=5.8e-05 Score=61.70 Aligned_cols=103 Identities=10% Similarity=0.022 Sum_probs=77.8
Q ss_pred eEEEEccccchHHHHHHHHHHHhcc---CCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhc-CCCCChhHHHh
Q 029273 18 FEVTVVGYNHKLRILLETIFQKIAQ---FKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQ-DQTWPWMEELE 93 (196)
Q Consensus 18 ~~i~v~G~s~kl~~~l~~v~~~l~~---~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~-~~~~~~~~~~~ 93 (196)
+.+.+..=.++...+++.+.+.+.. -.+++++|+++|..++.++... .+.|...+.......+. +......+..+
T Consensus 315 ~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 393 (425)
T 3d3y_A 315 MTVQTGIDGKNRNQVLRLISTELENIRLGKIRELEIEQTKAMLKNQYILA-LDNAGAWLEKEYLNELMPQTMLTAEEWIA 393 (425)
T ss_dssp EEEEEEECGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHSTTSCCCHHHHHH
T ss_pred EEEEEecCHhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHhc-ccCHHHHHHHHHHHHhhcCCCCCHHHHHH
Confidence 4455544445777777766655544 4699999999999999999876 46888888887777776 54455778899
Q ss_pred hCCCCCHHHHHHHHHHhhhhhheeeEeecC
Q 029273 94 VLPHLEAEDLAKFVPMMLSRTFLECYIAGN 123 (196)
Q Consensus 94 ~l~~it~~dl~~f~~~~~~~~~~~~lv~GN 123 (196)
.++++|.+|++++.++++.. ....|.|+
T Consensus 394 ~i~~vt~edv~~~a~~~~~~--~~~~v~g~ 421 (425)
T 3d3y_A 394 RINAVTIPEIQEVAKRLELQ--AIFFLEGE 421 (425)
T ss_dssp HHHHCCHHHHHHHHHHCEEE--EEEEEEEE
T ss_pred HHHhCCHHHHHHHHHhccCc--eEEEEeCC
Confidence 99999999999999998643 33455664
No 32
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=97.98 E-value=2.4e-05 Score=64.81 Aligned_cols=106 Identities=12% Similarity=0.036 Sum_probs=82.4
Q ss_pred eEEEEccccc-hHHHHHHHHHHHhcc---CCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhcCCCC-ChhHHH
Q 029273 18 FEVTVVGYNH-KLRILLETIFQKIAQ---FKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTW-PWMEEL 92 (196)
Q Consensus 18 ~~i~v~G~s~-kl~~~l~~v~~~l~~---~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~~~~-~~~~~~ 92 (196)
+.|.+.+-.+ +...+++.+.+.|.. -.+++++|+++|..++.++... .+.|...+.......+....+ ...+..
T Consensus 312 ~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~g~t~~el~~ak~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 390 (445)
T 3ami_A 312 FILEGVPSKGVTIAQLETDLRAQVRDIAAKGVTEAELSRVKSQMVAGKVYE-QDSLMGQATQIGGLEVLGLSWRDDDRFY 390 (445)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHTTTCCTTHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 4566655444 366666666555544 4599999999999999999887 578888888877777776444 356778
Q ss_pred hhCCCCCHHHHHHHHHHhhhhhheeeEeecCC
Q 029273 93 EVLPHLEAEDLAKFVPMMLSRTFLECYIAGNI 124 (196)
Q Consensus 93 ~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi 124 (196)
+.++++|.+|+.++.++++.+.+..++++|.-
T Consensus 391 ~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~p~ 422 (445)
T 3ami_A 391 QQLRSVTAAEVKAAAARLLTDDTLTVANLVPL 422 (445)
T ss_dssp HHHHTCCHHHHHHHHHTTSCSTTEEEEEEEEE
T ss_pred HHHHcCCHHHHHHHHHHHcCcCCeEEEEEccC
Confidence 99999999999999999998888888888863
No 33
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=97.87 E-value=9.1e-06 Score=75.41 Aligned_cols=136 Identities=10% Similarity=0.081 Sum_probs=98.6
Q ss_pred eecceEEEeec--------------CceeEEEEccccchHHHHHHHHHHHhccCCcChh-hHHHHHHHHHHHhhcccccC
Q 029273 4 VAGLDYGINHT--------------ESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPD-RFSVIKEMVTKEYHNNKFLQ 68 (196)
Q Consensus 4 ~Agl~~~~~~~--------------~~g~~i~v~G~s~kl~~~l~~v~~~l~~~~~~~~-~F~~~k~~~~~~l~n~~~~~ 68 (196)
.+|++++.... ...+.++..+++++++.+++.+.+.|.++.|++. ++..+..+.+.++++.....
T Consensus 787 tGGis~s~~~~~~~~~~~~~~~~~~~~~~~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~eRlk~ll~~~ks~le~~i~~s 866 (1193)
T 3s5m_A 787 IGSMSANVALYSKDDHLNVTDKYNAQALFNLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGMKTTFSEK 866 (1193)
T ss_dssp CSEEEEEEEEECCCBTTBCCCTTCCEEEEEEEEEEEGGGHHHHHHHHHHHHHSBCTTCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCceEEEeeeecccccccccccccccceEEEEEEEhhhcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhccccc
Confidence 46888777532 2347899999999999999999999999999865 69999999999998876667
Q ss_pred hHHHHHHHHHHhhcCCC-C-----Ch------hHHH----hhCCCCCHHHHHHHHHHhhhhhheeeEeecCCC-hHHHHH
Q 029273 69 PFQLAMYYCSLILQDQT-W-----PW------MEEL----EVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIE-SNEAGS 131 (196)
Q Consensus 69 P~~~a~~~~~~ll~~~~-~-----~~------~~~~----~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~-~~~a~~ 131 (196)
++..|+..+...+.+.. + +. .+++ +.++.+ .++|+++++.+|.+.++.+.++|+.+ .+++.+
T Consensus 867 GH~~A~~ra~s~~s~~~~~~e~~~Gl~~~~fl~~l~~~~e~~~~~l-~~~L~~i~~~if~~~nl~vsvtg~~~~~~~~~~ 945 (1193)
T 3s5m_A 867 GYAILMKYVKAHLNSKHYAHNIIYGYENYLKLQEQLELAENDFKTL-ENILVRIRNKIFNKKNLMVSVTSDYGALKHLFV 945 (1193)
T ss_dssp HHHHHHHHTTTTTCHHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHSCSTTEEEEEEECGGGTHHHHT
T ss_pred cHHHHHHHHHHhcCcchhhhhhhCChHHHHHHHHHHHhhHhhHHHH-HHHHHHHHHHHcCCCCeEEEEEeChhhHHHHHH
Confidence 78788776655554311 0 11 1111 112233 78999999999999999999999986 466665
Q ss_pred HHHHHHHHh
Q 029273 132 IIQYIEDVF 140 (196)
Q Consensus 132 ~~~~~~~~l 140 (196)
.++.+.+.+
T Consensus 946 ~l~~~l~~l 954 (1193)
T 3s5m_A 946 NSNESLKNL 954 (1193)
T ss_dssp TTHHHHHHH
T ss_pred HHHHHHHhh
Confidence 555444433
No 34
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=97.51 E-value=0.00096 Score=56.25 Aligned_cols=137 Identities=9% Similarity=0.016 Sum_probs=90.2
Q ss_pred ecceEEEeec----CceeEEEEccccchHHHHHHHHHHHhccC---CcChhhHHHHHHHHHHHhhccc----ccChHHHH
Q 029273 5 AGLDYGINHT----ESGFEVTVVGYNHKLRILLETIFQKIAQF---KVKPDRFSVIKEMVTKEYHNNK----FLQPFQLA 73 (196)
Q Consensus 5 Agl~~~~~~~----~~g~~i~v~G~s~kl~~~l~~v~~~l~~~---~~~~~~F~~~k~~~~~~l~n~~----~~~P~~~a 73 (196)
.|+.|++++. .....+.+++-.++..++++.+.+.+... .+++++|+++|..++.++.... ..++..+|
T Consensus 313 ~gl~y~~~s~~~~~~~~~~~~i~~~~~~~~~a~~~i~~el~~l~~~g~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a 392 (492)
T 3go9_A 313 KNLKLGFDCRVQYQRAQCAIHLNTPVENLTANMTFVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILM 392 (492)
T ss_dssp TTCEEEEEEEEETTEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHH
T ss_pred cccccccCchhhhhhcceEEEEEcCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 3566666543 22345666767788888888777766654 5999999999999999976541 23466777
Q ss_pred HHHHHHhhcCCCC-ChhH---HH-hhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHH-HHHHHHHHHHHhc
Q 029273 74 MYYCSLILQDQTW-PWME---EL-EVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNE-AGSIIQYIEDVFF 141 (196)
Q Consensus 74 ~~~~~~ll~~~~~-~~~~---~~-~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~-a~~~~~~~~~~l~ 141 (196)
......++....+ ++++ .. +.++++|.+|+.++.++++.+....++|.|.=..+. ..++.....+...
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~edV~~~a~~~l~~~~~~vvvg~~~~~e~~~~~l~~~~~~~~~ 466 (492)
T 3go9_A 393 SQRLRSQQSGVVDIAPEQYQKLRQAFLSGLTLAELNRELKQQLSQDTTLVLMQPKGEPEVNVKALQEIYNGIMA 466 (492)
T ss_dssp HHHHHHHHHTCCCBCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCEEEEEEETTSCCCCHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhCCCCeEEEEcCCCCCCccHHHHHHHHHHHhC
Confidence 7777666655433 4544 23 558999999999999999987544444443333332 4445555555553
No 35
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=75.37 E-value=1.9 Score=33.71 Aligned_cols=75 Identities=9% Similarity=0.020 Sum_probs=47.1
Q ss_pred EEEEccccchHHHHHHHHHHHhccCCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhcCCCCChhHHHhhCCCC
Q 029273 19 EVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHL 98 (196)
Q Consensus 19 ~i~v~G~s~kl~~~l~~v~~~l~~~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~~~~~~~~~~~~l~~i 98 (196)
.+.+.+ ++...+.+.+.+.+.+ .+++++|+++|..++.++... .+.| +...+. .++++
T Consensus 270 ~i~~~~--~~~~~~~~~i~~~l~~-~~t~~el~~ak~~~~~~~~~~-~~~~-------------~~~~~~-----~i~~v 327 (352)
T 3cx5_B 270 TLFVRD--QDSAVVSSNIKKIVAD-LKKGKDLSPAINYTKLKNAVQ-NESV-------------SSPIEL-----NFDAV 327 (352)
T ss_dssp EEEEEE--SCHHHHHHHHHHHHHH-HHSCEECGGGHHHHHHHHHHH-CCST-------------TCCCCS-----CGGGC
T ss_pred EEEEEe--CCHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHhh-hhcc-------------CCccce-----eeeee
Confidence 444443 3455555555554444 389999999999999998876 3443 111222 36666
Q ss_pred CHHHHHHHHHHhhhhhheeeEeecCCC
Q 029273 99 EAEDLAKFVPMMLSRTFLECYIAGNIE 125 (196)
Q Consensus 99 t~~dl~~f~~~~~~~~~~~~lv~GNi~ 125 (196)
|..+ + ..+.+.++|+++
T Consensus 328 t~~~--------~--~~~~~~~~G~~~ 344 (352)
T 3cx5_B 328 KDFK--------L--GKFNYVAVGDVS 344 (352)
T ss_dssp CEEC--------C--CSCEEEEEESGG
T ss_pred eHhh--------c--CCceEEEEcccc
Confidence 6432 3 688999999876
No 36
>2r9i_A Putative phage capsid protein; putative phage capsid domain, protein structure initi structural genomics; 2.60A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID}
Probab=61.31 E-value=11 Score=24.82 Aligned_cols=44 Identities=11% Similarity=0.274 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHhh-hhhheeeEeecCCChHHHHHHHHHHHHHh
Q 029273 97 HLEAEDLAKFVPMML-SRTFLECYIAGNIESNEAGSIIQYIEDVF 140 (196)
Q Consensus 97 ~it~~dl~~f~~~~~-~~~~~~~lv~GNi~~~~a~~~~~~~~~~l 140 (196)
.+++.||.++...++ +..+....|..++++.+|.+.++.+..++
T Consensus 3 amnlkdllahrenlmdsakrarsaitddmdpadaaqavenvksii 47 (141)
T 2r9i_A 3 AMNLKDLLAHRENLMDSAKRARSAITDDMDPADAAQAVENVKSII 47 (141)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHH
Confidence 567899999999888 45578888999999999988777766554
No 37
>2dbn_A Hypothetical protein YBIU; alpha/beta structure, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2dbi_A 2csg_A*
Probab=54.65 E-value=58 Score=27.01 Aligned_cols=89 Identities=13% Similarity=0.018 Sum_probs=53.3
Q ss_pred hhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhcCCCCChh---HH-HhhCCCCCHHHHHH------HHHHhhhhhhe
Q 029273 47 PDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWM---EE-LEVLPHLEAEDLAK------FVPMMLSRTFL 116 (196)
Q Consensus 47 ~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~~~~~~~---~~-~~~l~~it~~dl~~------f~~~~~~~~~~ 116 (196)
+.+|..+|.+++.+..+ ...++..+...|....-... .+ -+.+..|+++|+.+ +.+.+. .+.
T Consensus 55 ~~rf~~~K~~L~~~~~~------v~~sw~rl~~~L~~~v~~I~~~~~~G~~~iP~i~f~di~~~~~s~~~~~~ir--~rG 126 (461)
T 2dbn_A 55 KAAIRQMKHALRAQLGD------VQQIFNQLSDDIATRVAEINALKAQGDAVWPVLSYADIKAGHVTAEQREQIK--RRG 126 (461)
T ss_dssp HHHHHHHHHHHHHHHSC------HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCEEEHHHHHHTCCCHHHHHHHH--HHS
T ss_pred HHHHHHHHHHHHhhhHH------HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceecHHHhcCCCCCHHHHHHHH--hcc
Confidence 48999999999888321 23333333333321100000 00 14566677777643 223332 256
Q ss_pred eeEeecCCChHHHHHHHHHHHHHhccC
Q 029273 117 ECYIAGNIESNEAGSIIQYIEDVFFKG 143 (196)
Q Consensus 117 ~~lv~GNi~~~~a~~~~~~~~~~l~~~ 143 (196)
-++|-|-|.+++|....+.+.+-+...
T Consensus 127 ~vVIRgvvp~e~A~~~~~~~~~yl~~n 153 (461)
T 2dbn_A 127 CAVIKGHFPREQALGWDQSMLDYLDRN 153 (461)
T ss_dssp EEEEETSSCHHHHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHhC
Confidence 678999999999999999988887543
No 38
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=48.96 E-value=16 Score=28.56 Aligned_cols=39 Identities=10% Similarity=0.133 Sum_probs=32.1
Q ss_pred CCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHH
Q 029273 95 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQY 135 (196)
Q Consensus 95 l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~ 135 (196)
|++.+.++++...+.. ..++.+.+.|+++.+.+.++++.
T Consensus 235 LDn~~~~~l~~av~~i--~~~v~ieaSGGI~~~~i~~~a~t 273 (298)
T 3gnn_A 235 LDNFTLDMMRDAVRVT--EGRAVLEVSGGVNFDTVRAIAET 273 (298)
T ss_dssp EESCCHHHHHHHHHHH--TTSEEEEEESSCSTTTHHHHHHT
T ss_pred ECCCCHHHHHHHHHHh--CCCCeEEEEcCCCHHHHHHHHHc
Confidence 4678999999888765 35788999999999999988764
No 39
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=41.89 E-value=23 Score=18.69 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=22.0
Q ss_pred hhHHHhhCCCCCHHHHHHHHHHhhhhhhee
Q 029273 88 WMEELEVLPHLEAEDLAKFVPMMLSRTFLE 117 (196)
Q Consensus 88 ~~~~~~~l~~it~~dl~~f~~~~~~~~~~~ 117 (196)
.+++++.|.++|+-++.++.+.+-....+.
T Consensus 3 ~~~iie~i~~lTvlE~~eLvk~leekfGVs 32 (40)
T 1dd4_C 3 IDEIIEAIEKLTVSELAELVKKLEDKFGVT 32 (40)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHCCC
Confidence 456788888888888888887776655544
No 40
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=41.55 E-value=13 Score=18.36 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=18.5
Q ss_pred ChhHHHhhCCCCCHHHHHHHHHHh
Q 029273 87 PWMEELEVLPHLEAEDLAKFVPMM 110 (196)
Q Consensus 87 ~~~~~~~~l~~it~~dl~~f~~~~ 110 (196)
+.++.++++.++|+-++..+++.+
T Consensus 2 ~~~~iie~i~~lTvlEl~eLvk~l 25 (30)
T 1zav_U 2 TIDEIIEAIEKLTVSELAELVKKL 25 (30)
T ss_dssp CHHHHHHHHHHSBHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCcHHHHHHHHHHH
Confidence 346778888888888888887765
No 41
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=36.08 E-value=26 Score=27.35 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=32.0
Q ss_pred CCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHH
Q 029273 95 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQY 135 (196)
Q Consensus 95 l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~ 135 (196)
|++.+.+++++.++..- .++.+.+.|+|+.+.+.++++.
T Consensus 233 LDn~s~~~l~~av~~~~--~~v~leaSGGIt~~~i~~~A~t 271 (300)
T 3l0g_A 233 LDNMSISEIKKAVDIVN--GKSVLEVSGCVNIRNVRNIALT 271 (300)
T ss_dssp EESCCHHHHHHHHHHHT--TSSEEEEESSCCTTTHHHHHTT
T ss_pred ECCCCHHHHHHHHHhhc--CceEEEEECCCCHHHHHHHHHc
Confidence 47789999999887643 4788999999999999988664
No 42
>1r9f_A Core protein P19; protein-RNA complex, dimer, double helix, viral protein/RNA complex; 1.85A {Tomato bushy stunt virus} SCOP: d.255.1.1
Probab=35.20 E-value=74 Score=20.84 Aligned_cols=31 Identities=32% Similarity=0.480 Sum_probs=24.2
Q ss_pred ecceEEEeecCceeEEEEccccchHHHHHHHHH
Q 029273 5 AGLDYGINHTESGFEVTVVGYNHKLRILLETIF 37 (196)
Q Consensus 5 Agl~~~~~~~~~g~~i~v~G~s~kl~~~l~~v~ 37 (196)
.|..|++.. .|+.|+++|=+..+..+++..+
T Consensus 86 igCTYSIR~--RGvs~T~SGGSrtLq~L~eMAi 116 (136)
T 1r9f_A 86 IGCTYSIRF--RGVSITVSGGSRTLQHLCEMAI 116 (136)
T ss_dssp CEEEEEEEE--TTEEEEEEEEGGGHHHHHHHHH
T ss_pred cceeEEEEE--eeEEEEEcCCcHHHHHHHHHHH
Confidence 356677765 8999999999999888876544
No 43
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A
Probab=32.53 E-value=41 Score=20.92 Aligned_cols=35 Identities=17% Similarity=0.234 Sum_probs=26.7
Q ss_pred ceecceEEEeecCce-eEEEEccccchHHHHHHHHH
Q 029273 3 MVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 37 (196)
Q Consensus 3 ~~Agl~~~~~~~~~g-~~i~v~G~s~kl~~~l~~v~ 37 (196)
..-|+.=.+....+| +.+.+.|-.+.+..++..+-
T Consensus 26 ~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~ 61 (91)
T 2fhm_A 26 DKRKLAGWVKNRDDGRVEILAEGPENALQSFVEAVK 61 (91)
T ss_dssp HHTTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHH
T ss_pred HHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHH
Confidence 344676677777888 99999998888877776664
No 44
>1eoq_A GAG polyprotein capsid protein P27; virus/viral protein; NMR {Rous sarcoma virus - prague C} SCOP: a.28.3.1
Probab=32.47 E-value=97 Score=19.68 Aligned_cols=64 Identities=13% Similarity=0.066 Sum_probs=40.9
Q ss_pred hhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhcCCCCChhHHHhhC--CCCCHHHHHHHHHHhh
Q 029273 47 PDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVL--PHLEAEDLAKFVPMML 111 (196)
Q Consensus 47 ~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~~~~~~~~~~~~l--~~it~~dl~~f~~~~~ 111 (196)
++-|..+.+++...++... ..+...++.....+..+-...-...+.++ ...|++++..|+..-.
T Consensus 8 kEPFrDyVdRf~kalraeq-a~~~vK~wmt~tLlvQNANPdCk~iLkal~g~~~tl~em~~yi~~~~ 73 (96)
T 1eoq_A 8 SESFVDFANRLIKAVEGSD-LPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQ 73 (96)
T ss_dssp TCCHHHHHHHHHHHHHTTT-CCHHHHHHHHHHHHHHHSCHHHHHHHHHCCSCCCSHHHHHHHHHHHS
T ss_pred CCcHHHHHHHHHHHHHHhh-ccHhHhhhhHHHHHHHhcCHHHHHHHHccCCCCCCHHHHHHHHHHHH
Confidence 4678888888888888753 34555555444333333322334567888 3578999999988744
No 45
>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1
Probab=32.06 E-value=43 Score=20.70 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=27.3
Q ss_pred ceecceEEEeecCce-eEEEEccccchHHHHHHHHH
Q 029273 3 MVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 37 (196)
Q Consensus 3 ~~Agl~~~~~~~~~g-~~i~v~G~s~kl~~~l~~v~ 37 (196)
..-|+.=.+....+| +.+.+.|-.+.+..++..+-
T Consensus 26 ~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~ 61 (88)
T 1ulr_A 26 LELGLSGYAENLPDGRVEVVAEGPKEALELFLHHLK 61 (88)
T ss_dssp HHTTCEEEEEECTTSCEEEEEESCHHHHHHHHHHHH
T ss_pred HHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHH
Confidence 334666677777888 99999999888888877764
No 46
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=31.54 E-value=48 Score=26.11 Aligned_cols=38 Identities=16% Similarity=0.116 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHH
Q 029273 95 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQ 134 (196)
Q Consensus 95 l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~ 134 (196)
|++.+.++++...+.. . .++.+.+.|+|+.+.+.++.+
T Consensus 257 LDn~~~~~l~~av~~l-~-~~v~ieaSGGIt~~~I~~~a~ 294 (320)
T 3paj_A 257 LDNFSLEMMREAVKIN-A-GRAALENSGNITLDNLKECAE 294 (320)
T ss_dssp EESCCHHHHHHHHHHH-T-TSSEEEEESSCCHHHHHHHHT
T ss_pred ECCCCHHHHHHHHHHh-C-CCCeEEEECCCCHHHHHHHHH
Confidence 4668899998888753 2 478999999999999888765
No 47
>1rpu_A 19 kDa protein; RNAI, protein-RNA complex, RNA double helix, RNA length recognition, RNA binding protein/RNA complex; 2.50A {Carnation italian ringspot virus} SCOP: d.255.1.1
Probab=30.88 E-value=89 Score=21.29 Aligned_cols=31 Identities=32% Similarity=0.490 Sum_probs=24.4
Q ss_pred ecceEEEeecCceeEEEEccccchHHHHHHHHH
Q 029273 5 AGLDYGINHTESGFEVTVVGYNHKLRILLETIF 37 (196)
Q Consensus 5 Agl~~~~~~~~~g~~i~v~G~s~kl~~~l~~v~ 37 (196)
.|..|++.+ .|+.|+++|=+..|..|++..+
T Consensus 108 igCTYSIRf--RG~svT~SGGSrtLq~L~eMAi 138 (172)
T 1rpu_A 108 VGCTYSIRF--RGVSVTISGGSRTLQHLCEMAI 138 (172)
T ss_dssp CEEEEEEEE--TTEEEEEEEEGGGHHHHHHHHH
T ss_pred cceeEEEEE--eeEEEEecCCcHHHHHHHHHHH
Confidence 366777775 7999999999998888776544
No 48
>1xou_B Z5138 gene product; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.2
Probab=30.42 E-value=27 Score=21.15 Aligned_cols=40 Identities=20% Similarity=0.186 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHhhcccccChHHHHHHHHHHhhcCCCCChhH
Q 029273 48 DRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWME 90 (196)
Q Consensus 48 ~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll~~~~~~~~~ 90 (196)
.+|+.+|+.+-.--+.. ..+| +|...+..++.+..|+-+.
T Consensus 29 aefdvvke~v~~l~eka-kt~p--qaae~ln~liegyt~geer 68 (95)
T 1xou_B 29 AEFDVVKESVNELSEKA-KTDP--QAAEKLNKLIEGYTYGEER 68 (95)
T ss_dssp HHHHHHHHHHHHHHHHH-HHCH--HHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHHHHHHhh-cCCH--HHHHHHHHHHHhhcchhHH
Confidence 57999998765444444 4567 6788888888776565543
No 49
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=30.40 E-value=49 Score=25.51 Aligned_cols=40 Identities=10% Similarity=-0.023 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHHhhh-hhheeeEeecCCChHHHHHHHHH
Q 029273 96 PHLEAEDLAKFVPMMLS-RTFLECYIAGNIESNEAGSIIQY 135 (196)
Q Consensus 96 ~~it~~dl~~f~~~~~~-~~~~~~lv~GNi~~~~a~~~~~~ 135 (196)
++.+.++++...+..-. ..++.+.+.|+|+++.+.++.+.
T Consensus 221 Dn~~~~~~~~~v~~l~~~~~~v~ieaSGGIt~~~i~~~a~t 261 (284)
T 1qpo_A 221 DNFAVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATYAET 261 (284)
T ss_dssp ETCCHHHHHHHHHHHHHHCTTCEEEEESSCCTTTHHHHHHT
T ss_pred CCCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhc
Confidence 45677777776665432 12567777888888777776543
No 50
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=30.24 E-value=61 Score=25.14 Aligned_cols=39 Identities=10% Similarity=0.218 Sum_probs=30.5
Q ss_pred CCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHH
Q 029273 95 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQY 135 (196)
Q Consensus 95 l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~ 135 (196)
+.+.+.++++...+. .. .++.+.+.|+|+.+.+.++.+.
T Consensus 234 ld~~~~e~l~~~v~~-~~-~~~~I~ASGGIt~~~i~~~a~~ 272 (296)
T 1qap_A 234 LDNFNTDQMREAVKR-VN-GQARLEVSGNVTAETLREFAET 272 (296)
T ss_dssp ESSCCHHHHHHHHHT-TC-TTCCEEECCCSCHHHHHHHHHT
T ss_pred ECCCCHHHHHHHHHH-hC-CCCeEEEECCCCHHHHHHHHHc
Confidence 367889999888763 33 3688999999999999887654
No 51
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=29.33 E-value=41 Score=26.05 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=29.4
Q ss_pred CCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHH
Q 029273 95 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQY 135 (196)
Q Consensus 95 l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~ 135 (196)
|++.+.+++++..+..- .++.+.+.|+|+.+.+.++.+.
T Consensus 224 LDn~~~~~l~~av~~~~--~~v~ieaSGGIt~~~i~~~a~t 262 (287)
T 3tqv_A 224 LDNFSGEDIDIAVSIAR--GKVALEVSGNIDRNSIVAIAKT 262 (287)
T ss_dssp EESCCHHHHHHHHHHHT--TTCEEEEESSCCTTTHHHHHTT
T ss_pred EcCCCHHHHHHHHHhhc--CCceEEEECCCCHHHHHHHHHc
Confidence 35688888888877542 4788889999999888877553
No 52
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=29.09 E-value=1.1e+02 Score=19.08 Aligned_cols=48 Identities=13% Similarity=0.069 Sum_probs=38.6
Q ss_pred hhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHhc
Q 029273 93 EVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFF 141 (196)
Q Consensus 93 ~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~ 141 (196)
-.++--+++|.+...+.+. .....++-..+++.++|+.+++.+.+...
T Consensus 8 vv~~P~sy~Da~~I~d~Lr-~~~~VvvNL~~ld~~~AqRivDF~sG~~y 55 (87)
T 3p04_A 8 VPVELHSFEDAQVIGGAFR-DGDAVVFDMSLLSREEARRIVDFAAGLCF 55 (87)
T ss_dssp EEEECSSGGGHHHHHHHHH-TTCCEEEECTTSCHHHHHHHHHHHHHHHH
T ss_pred EEEecCcHHHHHHHHHHHH-CCCEEEEECCCCCHHHHHHHHHHhccceE
Confidence 3455668899998777654 56788888899999999999999988764
No 53
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=28.60 E-value=75 Score=17.16 Aligned_cols=20 Identities=10% Similarity=0.157 Sum_probs=13.4
Q ss_pred cChhhHHHHHHHHHHHhhcc
Q 029273 45 VKPDRFSVIKEMVTKEYHNN 64 (196)
Q Consensus 45 ~~~~~F~~~k~~~~~~l~n~ 64 (196)
.+..+++++|+.++++++..
T Consensus 4 ~~~~dle~~KqEIL~E~RkE 23 (45)
T 1use_A 4 SDYSDLQRVKQELLEEVKKE 23 (45)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 45566777777777776654
No 54
>3bbz_A P protein, phosphoprotein; molten globule, viral protein, replication; 2.10A {Mumps virus}
Probab=28.42 E-value=56 Score=18.03 Aligned_cols=15 Identities=20% Similarity=0.306 Sum_probs=11.7
Q ss_pred ChhhHHHHHHHHHHH
Q 029273 46 KPDRFSVIKEMVTKE 60 (196)
Q Consensus 46 ~~~~F~~~k~~~~~~ 60 (196)
+|+.|..+|..++|+
T Consensus 33 tE~q~k~iKr~IIRs 47 (49)
T 3bbz_A 33 TEDALNDIKRDIIRS 47 (49)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh
Confidence 578888888888775
No 55
>3aqo_A Probable secdf protein-export membrane protein; periplasmic domain, translocon, cell membrane, M protein transport, translocation; 2.60A {Thermus thermophilus}
Probab=27.78 E-value=49 Score=24.57 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=18.3
Q ss_pred eeEeecCCChHHHHHHHHHHHH
Q 029273 117 ECYIAGNIESNEAGSIIQYIED 138 (196)
Q Consensus 117 ~~lv~GNi~~~~a~~~~~~~~~ 138 (196)
..-|.||++.++|.+++..+..
T Consensus 192 ~~~ItG~ft~eeA~~LA~~Lra 213 (229)
T 3aqo_A 192 QAVIEGLSSVEEASEIALVLRS 213 (229)
T ss_dssp EEEECCCSCHHHHHHHHHHHHH
T ss_pred ceEEcCCCCHHHHHHHHHHHhc
Confidence 4668899999999999887654
No 56
>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A
Probab=27.18 E-value=53 Score=20.95 Aligned_cols=34 Identities=32% Similarity=0.446 Sum_probs=26.0
Q ss_pred ceecceEEEeecCce-eEEEEccccchHHHHHHHH
Q 029273 3 MVAGLDYGINHTESG-FEVTVVGYNHKLRILLETI 36 (196)
Q Consensus 3 ~~Agl~~~~~~~~~g-~~i~v~G~s~kl~~~l~~v 36 (196)
..-|+.=.+....+| +.+.+.|-.+.+..++..+
T Consensus 38 ~~lgL~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l 72 (101)
T 2bjd_A 38 IRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERI 72 (101)
T ss_dssp HHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHH
T ss_pred HHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHH
Confidence 344676677777888 9999999888877776665
No 57
>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1
Probab=26.76 E-value=55 Score=20.88 Aligned_cols=34 Identities=12% Similarity=-0.061 Sum_probs=25.8
Q ss_pred eecceEEEeecCce-eEEEEccccchHHHHHHHHH
Q 029273 4 VAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 37 (196)
Q Consensus 4 ~Agl~~~~~~~~~g-~~i~v~G~s~kl~~~l~~v~ 37 (196)
.-|+.=.+....+| +.+.+.|-.+.+..++..+-
T Consensus 36 ~lgL~G~V~N~~dG~Vei~~eG~~~~l~~f~~~l~ 70 (102)
T 1urr_A 36 RLGVRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLE 70 (102)
T ss_dssp HHTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHH
T ss_pred HhCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHH
Confidence 34666677777888 99999998888777766654
No 58
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=26.47 E-value=56 Score=20.68 Aligned_cols=35 Identities=23% Similarity=0.183 Sum_probs=26.2
Q ss_pred ceecceEEEeecCce-eEEEEccccchHHHHHHHHH
Q 029273 3 MVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 37 (196)
Q Consensus 3 ~~Agl~~~~~~~~~g-~~i~v~G~s~kl~~~l~~v~ 37 (196)
..-|+.=.+....+| +.+.+.|-.+.+..++..+-
T Consensus 32 ~~lgL~G~V~N~~dG~Vei~~eG~~~~v~~f~~~l~ 67 (99)
T 2vh7_A 32 KKLGLVGWVQNTDRGTVQGQLQGPISKVRHMQEWLE 67 (99)
T ss_dssp HHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHH
T ss_pred HHcCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHH
Confidence 334666677777888 99999998888777766654
No 59
>2atz_A H. pylori predicted coding region HP0184; structural genomics, PSI, protein struc initiative, midwest center for structural genomics, MCSG; HET: DGT; 2.00A {Helicobacter pylori} SCOP: d.264.1.3
Probab=25.75 E-value=1e+02 Score=21.72 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=38.8
Q ss_pred hhheeeEe-ecCCChHHHHHHHHHHHHHhccCCCCCccCCCCCCCCc-cceEEeCC
Q 029273 113 RTFLECYI-AGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLT-NRVVKLEK 166 (196)
Q Consensus 113 ~~~~~~lv-~GNi~~~~a~~~~~~~~~~l~~~~~~~~~~l~~~~~~~-~~~~~l~~ 166 (196)
+.++.++| .|--+-++|.++++.+...|..+....++-+|..+++. .-++.||=
T Consensus 110 pghlhlyIhkghttL~E~~ql~~~lS~kLa~klpkeWr~fPs~dlP~~fNIltLPY 165 (180)
T 2atz_A 110 PGHLHLYVHKGHTELGEGERLVKTLSMKLAQGLPKEWKVFPSNEWPKEFNILALPY 165 (180)
T ss_dssp TTCEEEEECCCSEEHHHHHHHHHHHHHHHHTTSCCCEEEESCTTSCGGGCEEECCC
T ss_pred CCeEEEEEecCCccHHHHHHHHHHHHHHHHhhCccceeeCCCccCChhcceeeccH
Confidence 56778888 59999999999999999999877655565554444432 33566663
No 60
>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A 2w4d_A
Probab=25.51 E-value=45 Score=20.80 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=25.3
Q ss_pred ceecceEEEeecCce-eEEEEccccchHHHHHHHH
Q 029273 3 MVAGLDYGINHTESG-FEVTVVGYNHKLRILLETI 36 (196)
Q Consensus 3 ~~Agl~~~~~~~~~g-~~i~v~G~s~kl~~~l~~v 36 (196)
..-|+.=.+....+| +.+.+.|-.+.+..++..+
T Consensus 28 ~~lgL~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l 62 (91)
T 1w2i_A 28 RKLGVNGWVRNLPDGSVEAVLEGDEERVEALIGWA 62 (91)
T ss_dssp HHHTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHT
T ss_pred HHcCCeEEEEECCCCCEEEEEEeCHHHHHHHHHHH
Confidence 334666677777888 9999999888776666554
No 61
>2gv1_A Probable acylphosphatase; globular alpha-helix/beta-sheet protein, hydrolase; NMR {Escherichia coli}
Probab=25.20 E-value=46 Score=20.77 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=24.7
Q ss_pred ecceEEEeecCce-eEEEEccccchHHHHHHHH
Q 029273 5 AGLDYGINHTESG-FEVTVVGYNHKLRILLETI 36 (196)
Q Consensus 5 Agl~~~~~~~~~g-~~i~v~G~s~kl~~~l~~v 36 (196)
-|+.=.+....+| +.+.+.|-.+.+..++..+
T Consensus 30 lgL~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l 62 (92)
T 2gv1_A 30 LGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWL 62 (92)
T ss_dssp HTCCCEEEECSSSCEEEEECSCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHh
Confidence 3565567777788 9999999888877777666
No 62
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=24.08 E-value=49 Score=23.97 Aligned_cols=62 Identities=13% Similarity=0.103 Sum_probs=37.0
Q ss_pred HHHHHHHhhcCCCCChhHHHhhCCCCCHHHHHHH---------HHHhhhhhheeeEeecCCChHHHHHHHH
Q 029273 73 AMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKF---------VPMMLSRTFLECYIAGNIESNEAGSIIQ 134 (196)
Q Consensus 73 a~~~~~~ll~~~~~~~~~~~~~l~~it~~dl~~f---------~~~~~~~~~~~~lv~GNi~~~~a~~~~~ 134 (196)
|...++.++.++.|+..++.+.-..++.++-... +.+++...+--+.-.||++..-..+.++
T Consensus 16 alHaLNnLLQg~~Ft~~dL~~Ia~~Ld~~e~~~m~e~g~~~~d~~~~~~~ps~n~~~~GnfsInVl~~AL~ 86 (191)
T 3o65_A 16 AQHCLNNLLQGEYFSPVELASIAHQLDEEERMRMAEGGVTSEEYLAFLQQPSENMDDTGFFSIQVISNALK 86 (191)
T ss_dssp HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHGGGCTTSHHHHHHHTSCCSSBCTTCCBBHHHHHHHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHcCHHHHHHHhhcCCChHHHHHHhcCCCCCcccCCCccHHHHHHHHH
Confidence 5667888999999998776444333333332100 2344544455666789999765555444
No 63
>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*
Probab=23.10 E-value=43 Score=20.86 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=14.0
Q ss_pred EeecCCChHHHHHHHHH
Q 029273 119 YIAGNIESNEAGSIIQY 135 (196)
Q Consensus 119 lv~GNi~~~~a~~~~~~ 135 (196)
..+|+|++++|.+++..
T Consensus 5 Wyhg~isR~~Ae~lL~~ 21 (96)
T 1jyr_A 5 WFFGKIPRAKAEEMLSK 21 (96)
T ss_dssp TBCCSCCHHHHHHHHHT
T ss_pred eeccCCCHHHHHHHHhc
Confidence 35899999999988654
No 64
>2l6a_A Nacht, LRR and PYD domains-containing protein 12; NLRP12, pyrin, death domain, signaling protein; NMR {Homo sapiens}
Probab=23.02 E-value=96 Score=19.82 Aligned_cols=54 Identities=20% Similarity=0.089 Sum_probs=36.2
Q ss_pred ChhHHHhhCCCCCHHHHHHHHHHhhh--hhheeeEeecCCChHHHHHHHHHHHHHh
Q 029273 87 PWMEELEVLPHLEAEDLAKFVPMMLS--RTFLECYIAGNIESNEAGSIIQYIEDVF 140 (196)
Q Consensus 87 ~~~~~~~~l~~it~~dl~~f~~~~~~--~~~~~~lv~GNi~~~~a~~~~~~~~~~l 140 (196)
+.-.++..|+.++-++|+.|...+.. .....-+-.|.+...+..++++.+.+..
T Consensus 11 ~~~~Ll~~Le~L~~~ElkkFK~~L~~~l~~g~~~Ip~~~le~ad~~dLa~lLv~~y 66 (102)
T 2l6a_A 11 GLCRLSTYLEELEAVELKKFKLYLGTATELGEGKIPWGSMEKAGPLEMAQLLITHF 66 (102)
T ss_dssp SHHHHHHHHTTSCHHHHHHHHHHHHSCSTTTTCSSCSSTTTTCCHHHHHHHHHHHT
T ss_pred cchhHHHHHHHcCHHHHHHHHHHHcccccccCCCCChHHHhcCCHHHHHHHHHHHc
Confidence 34467889999999999999766654 1122234467777777777777666654
No 65
>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein; 1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A
Probab=22.93 E-value=46 Score=21.02 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=14.3
Q ss_pred EeecCCChHHHHHHHHH
Q 029273 119 YIAGNIESNEAGSIIQY 135 (196)
Q Consensus 119 lv~GNi~~~~a~~~~~~ 135 (196)
..+|+|++++|.+++..
T Consensus 7 Wyhg~isR~~Ae~lL~~ 23 (105)
T 1nrv_A 7 WFHGRISREESHRIIKQ 23 (105)
T ss_dssp TBCTTCCHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHh
Confidence 35899999999998765
No 66
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1
Probab=22.81 E-value=47 Score=20.81 Aligned_cols=16 Identities=13% Similarity=0.266 Sum_probs=13.5
Q ss_pred eecCCChHHHHHHHHH
Q 029273 120 IAGNIESNEAGSIIQY 135 (196)
Q Consensus 120 v~GNi~~~~a~~~~~~ 135 (196)
.+|+|++++|.+++..
T Consensus 6 yhg~isR~~Ae~lL~~ 21 (103)
T 1i3z_A 6 YHGCLTKRECEALLLK 21 (103)
T ss_dssp EESSCCHHHHHHHHHT
T ss_pred ccCCCCHHHHHHHHhh
Confidence 4899999999988653
No 67
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A*
Probab=21.32 E-value=52 Score=20.68 Aligned_cols=16 Identities=13% Similarity=0.258 Sum_probs=13.8
Q ss_pred eecCCChHHHHHHHHH
Q 029273 120 IAGNIESNEAGSIIQY 135 (196)
Q Consensus 120 v~GNi~~~~a~~~~~~ 135 (196)
.+|+|++++|.+++..
T Consensus 7 yhg~isR~~Ae~lL~~ 22 (104)
T 1d4t_A 7 YHGKISRETGEKLLLA 22 (104)
T ss_dssp BCCSCCHHHHHHHHHH
T ss_pred EccCCCHHHHHHHHHh
Confidence 4899999999998754
No 68
>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}
Probab=21.29 E-value=52 Score=20.97 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=15.2
Q ss_pred eeEeecCCChHHHHHHHHH
Q 029273 117 ECYIAGNIESNEAGSIIQY 135 (196)
Q Consensus 117 ~~lv~GNi~~~~a~~~~~~ 135 (196)
.-..+|+|++++|.+++..
T Consensus 11 ~~Wyhg~isR~~Ae~lL~~ 29 (110)
T 2ekx_A 11 YDWFAGNISRSQSEQLLRQ 29 (110)
T ss_dssp SSSBCCSCCHHHHHHHHHH
T ss_pred CCeecCCCCHHHHHHHHhc
Confidence 3456999999999998754
No 69
>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.93 E-value=57 Score=21.20 Aligned_cols=18 Identities=22% Similarity=0.554 Sum_probs=15.1
Q ss_pred eEeecCCChHHHHHHHHH
Q 029273 118 CYIAGNIESNEAGSIIQY 135 (196)
Q Consensus 118 ~lv~GNi~~~~a~~~~~~ 135 (196)
-..+|+|++++|.+++..
T Consensus 17 ~WyhG~isR~~Ae~lL~~ 34 (118)
T 2dlz_A 17 PWFAGNMERQQTDNLLKS 34 (118)
T ss_dssp TTEEESCCHHHHHHHHHH
T ss_pred CceecCCCHHHHHHHhcC
Confidence 356999999999998765
No 70
>2zzd_B Thiocyanate hydrolase subunit beta; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_B 2dxb_B 2dd5_B* 2dxc_B*
Probab=20.87 E-value=2.2e+02 Score=19.82 Aligned_cols=76 Identities=11% Similarity=0.014 Sum_probs=54.6
Q ss_pred ChHHHHHHHHHHhh-cCCCCChhHHHhhCC-CCCHHHH--HHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHhccC
Q 029273 68 QPFQLAMYYCSLIL-QDQTWPWMEELEVLP-HLEAEDL--AKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKG 143 (196)
Q Consensus 68 ~P~~~a~~~~~~ll-~~~~~~~~~~~~~l~-~it~~dl--~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~ 143 (196)
.|...-...+...+ ..+.|+.++...+.+ .+.-.+. ..|+..|+...---++-.|=++.++...-...+...+...
T Consensus 66 epWE~rafAl~vaL~~~G~f~wdE~R~a~E~~l~p~~Y~~~sYYe~WL~ALe~lLvekGvit~~EL~ar~aEv~ar~~~~ 145 (157)
T 2zzd_B 66 EIWELNTFATCECLAWRGVWTAEERRRKQNCDVGQTVYLGMPYYGRWLLTAARILVDKQFVTLTELHNKIVEMRERVASG 145 (157)
T ss_dssp BHHHHHHHHHHHHHHHTTSCCHHHHHHHHHTTTCHHHHHHSCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCChhhccCCChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcc
Confidence 34443333333334 467899999887777 7766543 3588888887776777799999999998888888888654
No 71
>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2 subdomain, PEST motif, protein complex, cytokine regulator; HET: PTR; NMR {Mus musculus}
Probab=20.56 E-value=79 Score=22.07 Aligned_cols=22 Identities=9% Similarity=0.065 Sum_probs=16.5
Q ss_pred hheeeEeecCCChHHHHHHHHH
Q 029273 114 TFLECYIAGNIESNEAGSIIQY 135 (196)
Q Consensus 114 ~~~~~lv~GNi~~~~a~~~~~~ 135 (196)
..-...-+|+|++++|.+++..
T Consensus 20 L~~~~WyhG~IsR~eAe~lL~~ 41 (164)
T 2bbu_A 20 LQESGFYWSAVTGGEANLLLSA 41 (164)
T ss_dssp HHHTSCCCTTSCHHHHHHHHHH
T ss_pred hccCCccCCCCCHHHHHHHhcC
Confidence 3334556999999999998643
No 72
>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine, tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A
Probab=20.46 E-value=55 Score=21.07 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=14.5
Q ss_pred EeecCCChHHHHHHHHH
Q 029273 119 YIAGNIESNEAGSIIQY 135 (196)
Q Consensus 119 lv~GNi~~~~a~~~~~~ 135 (196)
..+|+|++++|.+++..
T Consensus 16 Wyhg~isR~~Ae~lL~~ 32 (117)
T 3pqz_A 16 WFHGRISREESQRLIGQ 32 (117)
T ss_dssp TBCCSCCHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHhc
Confidence 45999999999998765
No 73
>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
Probab=20.32 E-value=55 Score=20.77 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=14.5
Q ss_pred EeecCCChHHHHHHHHH
Q 029273 119 YIAGNIESNEAGSIIQY 135 (196)
Q Consensus 119 lv~GNi~~~~a~~~~~~ 135 (196)
..+|+|++++|.+++..
T Consensus 9 Wyhg~isr~~Ae~lL~~ 25 (109)
T 3tkz_A 9 WFHPNITGVEAENLLLT 25 (109)
T ss_dssp SBCTTCCHHHHHHHHHH
T ss_pred ceecCCCHHHHHHHHhc
Confidence 45999999999998765
No 74
>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}
Probab=20.17 E-value=60 Score=21.06 Aligned_cols=19 Identities=26% Similarity=0.588 Sum_probs=15.5
Q ss_pred eeEeecCCChHHHHHHHHH
Q 029273 117 ECYIAGNIESNEAGSIIQY 135 (196)
Q Consensus 117 ~~lv~GNi~~~~a~~~~~~ 135 (196)
.-..+|+|++++|.+++..
T Consensus 10 ~~WyhG~isR~eAe~lL~~ 28 (119)
T 2ysx_A 10 PCWNHGNITRSKAEELLSR 28 (119)
T ss_dssp CSSEEESCCHHHHHHHHHH
T ss_pred CccccCCCCHHHHHHHHhh
Confidence 3456999999999998764
Done!