BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029276
(196 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZWI7|RER1C_ARATH Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=2 SV=1
Length = 212
Score = 247 bits (631), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 122/178 (68%), Positives = 144/178 (80%), Gaps = 2/178 (1%)
Query: 13 EDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQ 72
+D SS S+SP A++R + S+R QHLLDK+VPHVL+RW+ CL VV IY VRVY V+
Sbjct: 22 DDNLQSSDSSSPADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVE 81
Query: 73 GFYIITYGLGIYLLNLLMGFLSPQIDPEYS--DGPTLPTRGSDEFRPFVRRLPEFKFWYC 130
GFYIITY +GIYLLNL++ FLSPQ DPE S G +LPTR SDE+RPFVRRLPEFKFW
Sbjct: 82 GFYIITYAIGIYLLNLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLS 141
Query: 131 VTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQ 188
+ R+F IGF++TFF FDVPVFWPILLFYW+MLF LTMR+QI HMIKYRYVPFS GK+
Sbjct: 142 IIRAFIIGFMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFSFGKK 199
>sp|O48670|RER1A_ARATH Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1
Length = 191
Score = 244 bits (623), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 114/176 (64%), Positives = 136/176 (77%), Gaps = 3/176 (1%)
Query: 16 SSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFY 75
S S S + + + R YQH LDK+ PH +RW+ L V IY +RVY +QGFY
Sbjct: 3 ESGGDSGSVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFY 62
Query: 76 IITYGLGIYLLNLLMGFLSPQIDPE---YSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVT 132
II YGLGIYLLNLL+GFLSP +DPE SDGP+LPTRGSDEF+PF+RRLPEFKFWY +T
Sbjct: 63 IIAYGLGIYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYSMT 122
Query: 133 RSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQ 188
++FCI F++TFFS FDVPVFWPILL YW++LF LTMRRQI HMIKY+Y+PFS GKQ
Sbjct: 123 KAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFSFGKQ 178
>sp|O48671|RER1B_ARATH Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=2 SV=2
Length = 195
Score = 235 bits (599), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 110/175 (62%), Positives = 135/175 (77%), Gaps = 2/175 (1%)
Query: 16 SSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFY 75
S S S + + + R YQ+ LDK+ PH +RW+ L IY +RVY + GFY
Sbjct: 3 GSGGDSGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHGFY 62
Query: 76 IITYGLGIYLLNLLMGFLSPQIDPEY--SDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTR 133
II+YGLGIYLLNLL+GFLSP +DPE SDG TLPTRGSDEF+PF+RRLPEFKFWY +T+
Sbjct: 63 IISYGLGIYLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSMTK 122
Query: 134 SFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQ 188
+FCI F++TFFS FDVPVFWPILL YW++LF LTMRRQI HMIK++Y+PFS+GKQ
Sbjct: 123 AFCIAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSIGKQ 177
>sp|Q9ZPV7|RER1D_ARATH Protein RER1D OS=Arabidopsis thaliana GN=At2g18240 PE=2 SV=2
Length = 221
Score = 207 bits (527), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 95/182 (52%), Positives = 132/182 (72%), Gaps = 2/182 (1%)
Query: 13 EDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQ 72
E S + + T + +++W+ S+ +Q+ LD+S P+++ RW+V L IY RVY V
Sbjct: 4 EPGSENEADTIVASPLAKWRIEFSKSFQNYLDRSAPNIVRRWLVTLVAAVIYIYRVYSVY 63
Query: 73 GFYIITYGLGIYLLNLLMGFLSPQIDPEYS--DGPTLPTRGSDEFRPFVRRLPEFKFWYC 130
G+++I+YGL Y+LNLL+GFLSP++DPE D +LP SDE++PFVRRLPEFKFWY
Sbjct: 64 GYFVISYGLATYILNLLIGFLSPKVDPELEALDPDSLPVDESDEYKPFVRRLPEFKFWYA 123
Query: 131 VTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQVL 190
T++F + FV+TFFS DVPVFWPILL YWL+L++LTM+R I+HM KYRY PF + K V
Sbjct: 124 ATKAFVVAFVMTFFSFLDVPVFWPILLCYWLVLYSLTMKRLIVHMFKYRYFPFDVRKPVK 183
Query: 191 LI 192
L+
Sbjct: 184 LL 185
>sp|A5PJ65|RER1_BOVIN Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2
Length = 196
Score = 206 bits (524), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 97/181 (53%), Positives = 129/181 (71%), Gaps = 4/181 (2%)
Query: 12 AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLV 71
+E S S + + R+ + + YQ LDKS PH RWVV L + IY +RVYL+
Sbjct: 2 SEGDSVGDSVHGKPSVVYRFFTRLGQIYQSWLDKSTPHTAVRWVVTLGLSFIYMIRVYLL 61
Query: 72 QGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
QG+YI+TY LGIY LNL + FLSP++DP + DGP+LPT+ ++EFRPF+RRLPEFKF
Sbjct: 62 QGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121
Query: 128 WYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGK 187
W+ T+ + V TFF AF+VPVFWPIL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK
Sbjct: 122 WHAATKGILVAMVCTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGK 181
Query: 188 Q 188
+
Sbjct: 182 R 182
>sp|Q5R5U4|RER1_PONAB Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1
Length = 196
Score = 202 bits (514), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 95/181 (52%), Positives = 129/181 (71%), Gaps = 4/181 (2%)
Query: 12 AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLV 71
+E S S + + R+ + + YQ LDKS P+ RWVV L + +Y +RVYL+
Sbjct: 2 SEGDSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLL 61
Query: 72 QGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
QG+YI+TY LGIY LNL + FLSP++DP + DGP+LPT+ ++EFRPF+RRLPEFKF
Sbjct: 62 QGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121
Query: 128 WYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGK 187
W+ T+ + V TFF AF+VPVFWPIL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK
Sbjct: 122 WHAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGK 181
Query: 188 Q 188
+
Sbjct: 182 R 182
>sp|O15258|RER1_HUMAN Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1
Length = 196
Score = 202 bits (514), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 95/181 (52%), Positives = 129/181 (71%), Gaps = 4/181 (2%)
Query: 12 AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLV 71
+E S S + + R+ + + YQ LDKS P+ RWVV L + +Y +RVYL+
Sbjct: 2 SEGDSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLL 61
Query: 72 QGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
QG+YI+TY LGIY LNL + FLSP++DP + DGP+LPT+ ++EFRPF+RRLPEFKF
Sbjct: 62 QGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121
Query: 128 WYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGK 187
W+ T+ + V TFF AF+VPVFWPIL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK
Sbjct: 122 WHAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGK 181
Query: 188 Q 188
+
Sbjct: 182 R 182
>sp|Q498C8|RER1_RAT Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=1
Length = 196
Score = 202 bits (513), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 94/181 (51%), Positives = 129/181 (71%), Gaps = 4/181 (2%)
Query: 12 AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLV 71
+E S S + + R+ + + YQ LDKS P+ RWVV L + +Y +RVYL+
Sbjct: 2 SEGDSVGDSVHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLL 61
Query: 72 QGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
QG+YI+TY LGIY LNL + FLSP++DP + DGP+LPT+ ++EFRPF+RRLPEFKF
Sbjct: 62 QGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121
Query: 128 WYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGK 187
W+ T+ + + TFF AF+VPVFWPIL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK
Sbjct: 122 WHAATKGILVAMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGK 181
Query: 188 Q 188
+
Sbjct: 182 R 182
>sp|Q9CQU3|RER1_MOUSE Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1
Length = 196
Score = 202 bits (513), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 94/181 (51%), Positives = 129/181 (71%), Gaps = 4/181 (2%)
Query: 12 AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLV 71
+E S S + + R+ + + YQ LDKS P+ RWVV L + +Y +RVYL+
Sbjct: 2 SEGDSVGDSVHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLL 61
Query: 72 QGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
QG+YI+TY LGIY LNL + FLSP++DP + DGP+LPT+ ++EFRPF+RRLPEFKF
Sbjct: 62 QGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121
Query: 128 WYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGK 187
W+ T+ + + TFF AF+VPVFWPIL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK
Sbjct: 122 WHAATKGILVAMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGK 181
Query: 188 Q 188
+
Sbjct: 182 R 182
>sp|Q5ZHM5|RER1_CHICK Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1
Length = 196
Score = 202 bits (513), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 95/181 (52%), Positives = 128/181 (70%), Gaps = 4/181 (2%)
Query: 12 AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLV 71
+E S S + + R+ + + YQ LDKS P+ RW+V L + IY +RVYL+
Sbjct: 2 SEGDSIGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWIVTLGLSFIYMIRVYLL 61
Query: 72 QGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
QG+YI+TY LGIY LNL + FLSP++DP + DGP+LPTR ++EFRPF+RRLPEFKF
Sbjct: 62 QGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTRQNEEFRPFIRRLPEFKF 121
Query: 128 WYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGK 187
W+ T+ + TFF AF+VPVFWPIL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK
Sbjct: 122 WHSATKGILVAMACTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGK 181
Query: 188 Q 188
+
Sbjct: 182 R 182
>sp|P25560|RER1_YEAST Protein RER1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=RER1 PE=1 SV=2
Length = 188
Score = 176 bits (446), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 83/180 (46%), Positives = 116/180 (64%), Gaps = 5/180 (2%)
Query: 14 DFSSSSSSTSPTAAISRWKYNVSRR-YQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQ 72
D+ SS + ++ K N + YQH LDK PH RW V ++ ++ VR+ + +
Sbjct: 2 DYDSSDTMNGGSSNPLITKMNTMKLLYQHYLDKVTPHAKERWAVLGGLLCLFMVRITMAE 61
Query: 73 GFYIITYGLGIYLLNLLMGFLSPQID----PEYSDGPTLPTRGSDEFRPFVRRLPEFKFW 128
G+Y+I YGLG++LLN + FL+P+ D + + S+EFRPF+RRLPEFKFW
Sbjct: 62 GWYVICYGLGLFLLNQFLAFLTPKFDMSLQQDEENNELEAGEKSEEFRPFIRRLPEFKFW 121
Query: 129 YCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQ 188
Y R+ I +L+ FS FD+PVFWPILL Y+++LF LTMRRQI HMIKYRY+P +GK+
Sbjct: 122 YNSIRATVISLLLSLFSIFDIPVFWPILLMYFILLFFLTMRRQIQHMIKYRYIPLDIGKK 181
>sp|P79003|RER1_SACPS Protein RER1 OS=Saccharomyces pastorianus GN=RER1 PE=3 SV=1
Length = 188
Score = 174 bits (442), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 115/180 (63%), Gaps = 5/180 (2%)
Query: 14 DFSSSSSSTSPTAAISRWKYNVSRR-YQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQ 72
D+ S ++ K N ++ YQH LDK PH RW V ++ ++ VR+ + +
Sbjct: 2 DYDSPDPMNGASSNALIAKMNSAKLLYQHYLDKVTPHAKQRWAVLGGLLCLFMVRITMAE 61
Query: 73 GFYIITYGLGIYLLNLLMGFLSPQID----PEYSDGPTLPTRGSDEFRPFVRRLPEFKFW 128
G+Y+I YGLG++LLN + FL+P+ D + + S+EFRPF+RRLPEFKFW
Sbjct: 62 GWYVICYGLGLFLLNQFLAFLTPKFDMSLQQDEENNELEAGEKSEEFRPFIRRLPEFKFW 121
Query: 129 YCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQ 188
Y R+ I VL+ FS FD+PVFWPILL Y+++LF LTMRRQI HM+KYRY+P +GK+
Sbjct: 122 YNSIRATVISLVLSLFSIFDIPVFWPILLMYFVLLFFLTMRRQIQHMMKYRYIPLDIGKK 181
>sp|P52879|RER1_CAEEL Protein RER1 homolog OS=Caenorhabditis elegans GN=rer-1 PE=3 SV=1
Length = 191
Score = 172 bits (436), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/167 (51%), Positives = 118/167 (70%), Gaps = 5/167 (2%)
Query: 26 AAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYL 85
SR+ +++ +YQ+ LD+ PH RWV+ L + +A R+ L+QGFYI+ Y +GIY
Sbjct: 10 GVTSRFFHSLEVKYQYYLDRLTPHTAFRWVIALISLVFFASRIILLQGFYIVAYAVGIYY 69
Query: 86 LNLLMGFLSPQIDP-----EYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFV 140
LNL + FL+P IDP + DGP LP++ +DEFRPF+RRLPEFKFW+ ++ I
Sbjct: 70 LNLFLLFLTPSIDPALEFEDEDDGPVLPSKTNDEFRPFMRRLPEFKFWHSFMKATLIAIT 129
Query: 141 LTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGK 187
TFF FDVPVFWPIL+ Y+ +L LT++RQIMHMIKYRY+PF++GK
Sbjct: 130 CTFFEFFDVPVFWPILVMYFFILTFLTLKRQIMHMIKYRYIPFTVGK 176
>sp|Q10358|RER1_SCHPO Protein rer1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rer1 PE=3 SV=1
Length = 184
Score = 168 bits (426), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 78/160 (48%), Positives = 109/160 (68%), Gaps = 8/160 (5%)
Query: 37 RRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQ 96
R Y+H +D+++P+ +RW+ +++++ +R+ LV+G+YI+ Y L IYLLNL + FL+P+
Sbjct: 20 RLYRHWVDRTIPYTTYRWLTVSGLIALFFIRILLVRGWYIVCYTLAIYLLNLFLAFLTPK 79
Query: 97 IDP--------EYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFD 148
DP E + LPT DEFRPF+RRLPEFKFWY R+ V +FF FD
Sbjct: 80 FDPSVEQAMKDEEIEEGVLPTSKDDEFRPFIRRLPEFKFWYSSMRATLFALVASFFRIFD 139
Query: 149 VPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQ 188
VPVFWPIL+ Y+L+L RRQI HM+KYRYVPF +GK+
Sbjct: 140 VPVFWPILVVYYLVLSFFCFRRQIQHMLKYRYVPFDIGKK 179
>sp|Q54D10|RER1_DICDI Protein RER1 homolog OS=Dictyostelium discoideum GN=rer1 PE=3 SV=1
Length = 188
Score = 154 bits (390), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 112/160 (70%), Gaps = 6/160 (3%)
Query: 35 VSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQG-FYIITYGLGIYLLNLLMGFL 93
++R+YQ+L++K++ + RW + +Y +RV L G +Y+ITY LGI+LL + FL
Sbjct: 22 IARKYQNLIEKTISFIPQRWAFVGFLSFLYILRVSLSSGGWYVITYALGIFLLTRFIAFL 81
Query: 94 SPQIDPEYSD--GPTLPT---RGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFD 148
SP+ DPE + G +LPT R DE +PF+RRLPEF FW+ + ++ I TF D
Sbjct: 82 SPKWDPELEEDSGDSLPTTLNRNDDEAKPFIRRLPEFLFWHSIFKALFISIFCTFIPFLD 141
Query: 149 VPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQ 188
+PVFWPILL Y++++F++TM++QI HMIKY+Y+PF++GK+
Sbjct: 142 LPVFWPILLLYFIIIFSVTMKKQIKHMIKYKYIPFTVGKK 181
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.331 0.143 0.463
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,468,901
Number of Sequences: 539616
Number of extensions: 2842538
Number of successful extensions: 8934
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 8897
Number of HSP's gapped (non-prelim): 30
length of query: 196
length of database: 191,569,459
effective HSP length: 111
effective length of query: 85
effective length of database: 131,672,083
effective search space: 11192127055
effective search space used: 11192127055
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.9 bits)