Query 029276
Match_columns 196
No_of_seqs 111 out of 239
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 10:18:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029276.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029276hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1688 Golgi proteins involve 100.0 1.6E-88 3.5E-93 565.9 15.2 180 14-193 2-185 (188)
2 PF03248 Rer1: Rer1 family; I 100.0 3.2E-86 6.9E-91 552.1 17.5 165 28-192 2-175 (176)
3 COG5249 RER1 Golgi protein inv 100.0 1.2E-75 2.7E-80 481.1 12.7 175 13-192 1-179 (180)
4 PF09973 DUF2208: Predicted me 84.1 2.2 4.7E-05 37.9 5.2 43 130-176 7-49 (233)
5 PF13260 DUF4051: Protein of u 77.0 3.2 6.9E-05 29.2 3.0 22 157-178 4-25 (54)
6 CHL00161 secY preprotein trans 55.3 15 0.00033 34.5 3.9 110 71-184 294-416 (417)
7 PF06703 SPC25: Microsomal sig 35.7 70 0.0015 25.8 4.4 40 131-170 33-77 (162)
8 PF12273 RCR: Chitin synthesis 33.2 18 0.00039 28.4 0.6 13 53-65 1-13 (130)
9 TIGR03097 PEP_O_lig_1 probable 30.1 92 0.002 28.6 4.7 59 119-177 69-130 (402)
10 PRK06531 yajC preprotein trans 25.4 51 0.0011 26.3 1.9 30 148-179 2-31 (113)
11 PF12273 RCR: Chitin synthesis 24.8 1E+02 0.0022 24.1 3.5 18 152-169 4-21 (130)
12 PRK05886 yajC preprotein trans 23.0 75 0.0016 25.2 2.4 27 151-178 6-32 (109)
13 COG0817 RuvC Holliday junction 21.1 54 0.0012 27.9 1.3 40 139-178 86-125 (160)
14 TIGR02920 acc_sec_Y2 accessory 20.2 1.5E+02 0.0033 27.8 4.2 108 71-183 273-394 (395)
No 1
>KOG1688 consensus Golgi proteins involved in ER retention (RER) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-88 Score=565.91 Aligned_cols=180 Identities=60% Similarity=1.110 Sum_probs=172.7
Q ss_pred hccCCC-CCCCchhHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhhheeccEEEeehhHHHHHHHHHHhh
Q 029276 14 DFSSSS-SSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGF 92 (196)
Q Consensus 14 ~~~~~~-~~~~~~~~~~~~~~~~~~~yQ~~LDk~tp~~~~RW~~~~~L~~lf~lRv~~~~g~YiVtY~LgIylLnlfi~F 92 (196)
|.|+++ +++++++|+.++.+++++.||+||||+|||+..||+++++++++|++||+..|||||||||||||+||+||+|
T Consensus 2 e~~~~~~~~~~~a~~v~~~~~~~~~~yQ~yLDr~tPh~~~RW~~tl~l~~iy~iRi~~~~G~YII~Y~LgIYlLNlfiaF 81 (188)
T KOG1688|consen 2 EDDSSGEDSGGVASPVKRFFHELSQLYQHYLDRSTPHTAVRWVVTLVLLLIYCIRIYLVQGFYIITYALGIYLLNLFIAF 81 (188)
T ss_pred CccccCCCCCCcchHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 344444 5667889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCC---CCCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHH
Q 029276 93 LSPQIDPEY---SDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMR 169 (196)
Q Consensus 93 LtPk~Dp~l---~eg~~Lp~~~~dEFrPFiRRLPEFkFW~~~trat~ia~~~Tff~~fDiPVFWPILl~YFi~Lf~lTm~ 169 (196)
||||+|||+ |||+.||++++||||||||||||||||+++|||+++|+.||||++||+|||||||++||++||++|||
T Consensus 82 LtPk~Dp~~~~~~dg~~Lpt~~~dEFrPFIRRLPEFKFW~s~~ka~~ia~~~tfF~~fdVPVFwPILl~Y~i~lf~ltmr 161 (188)
T KOG1688|consen 82 LTPKVDPELQDADDGPSLPTRKSDEFRPFIRRLPEFKFWYSSTKATLIALLCTFFSIFDVPVFWPILLMYFIVLFFLTMR 161 (188)
T ss_pred hCCCCCchhhcccCCCCCCCCCccccchHHHcCchhHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHH
Confidence 999999997 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccCCCcchhhhhhc
Q 029276 170 RQIMHMIKYRYVPFSLGKQVLLIY 193 (196)
Q Consensus 170 rqI~HMiKyrYvPf~~gK~~y~~~ 193 (196)
|||+|||||||+||+.||++|++-
T Consensus 162 RqI~HMiKyrY~Pf~~gK~~~~~~ 185 (188)
T KOG1688|consen 162 RQIAHMIKYRYIPFDIGKKKYGSH 185 (188)
T ss_pred HHHHHHHhhcccccccCchhhhcc
Confidence 999999999999999999999763
No 2
>PF03248 Rer1: Rer1 family; InterPro: IPR004932 RER1 family proteins are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex [].; GO: 0016021 integral to membrane
Probab=100.00 E-value=3.2e-86 Score=552.12 Aligned_cols=165 Identities=56% Similarity=1.109 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhhheeccEEEeehhHHHHHHHHHHhhcCCCCCCCC------
Q 029276 28 ISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDPEY------ 101 (196)
Q Consensus 28 ~~~~~~~~~~~yQ~~LDk~tp~~~~RW~~~~~L~~lf~lRv~~~~g~YiVtY~LgIylLnlfi~FLtPk~Dp~l------ 101 (196)
++++.++++++||++|||||||++.||+++++|+++|++||+..|||||||||||||+||+||+|||||+||++
T Consensus 2 ~~~~~~~~~~~yQ~~LDk~tp~~~~RW~~~~~L~~lf~~Rv~~~~g~YiVtY~LgIylLnlfi~FltP~~Dp~l~~~~~~ 81 (176)
T PF03248_consen 2 VSRFFQKLKRTYQSYLDKSTPYTKYRWIAFLVLLFLFLLRVYYLQGWYIVTYALGIYLLNLFIAFLTPKFDPELEQDEED 81 (176)
T ss_pred HHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhcceeeehHHHHHHHHHHHHHHhCCcCcccccccccc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred -CCCCCCCC--CCCCCCCCcccCCchhHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029276 102 -SDGPTLPT--RGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKY 178 (196)
Q Consensus 102 -~eg~~Lp~--~~~dEFrPFiRRLPEFkFW~~~trat~ia~~~Tff~~fDiPVFWPILl~YFi~Lf~lTm~rqI~HMiKy 178 (196)
|||+.||+ +++||||||+|||||||||++||||+++|++||||+++|||||||||++|||+||++||||||+|||||
T Consensus 82 ~~~g~~Lp~~~~~~~EFrPFiRRlPEFkFW~~~tka~~i~~~~tff~~fdiPVFWPiLl~Yfi~lf~~tm~~qI~hMiKy 161 (176)
T PF03248_consen 82 EEEGPELPTTNENDDEFRPFIRRLPEFKFWYSCTKATVISLFCTFFPFFDIPVFWPILLVYFIVLFVLTMKRQIKHMIKY 161 (176)
T ss_pred ccccccCCCCcccccccCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35779999 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcchhhhhh
Q 029276 179 RYVPFSLGKQVLLI 192 (196)
Q Consensus 179 rYvPf~~gK~~y~~ 192 (196)
||+|||+||++|++
T Consensus 162 ~Y~Pf~~gK~~y~~ 175 (176)
T PF03248_consen 162 RYVPFDFGKKKYGR 175 (176)
T ss_pred CCCCccccchhccC
Confidence 99999999999986
No 3
>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.2e-75 Score=481.13 Aligned_cols=175 Identities=42% Similarity=0.835 Sum_probs=162.6
Q ss_pred hhccCCCCCCCchhHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhhheeccEEEeehhHHHHHHHHHHhh
Q 029276 13 EDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGF 92 (196)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~yQ~~LDk~tp~~~~RW~~~~~L~~lf~lRv~~~~g~YiVtY~LgIylLnlfi~F 92 (196)
||+|+++.. .+....+.+++.||+||||.+||+..||..+++|+++||.||...+|||+|||+||||+||+|++|
T Consensus 1 md~~~~~~~-----n~~~k~n~~k~LyqhylDr~~P~~~~RW~i~ggL~~lf~iRI~~~~gwY~icY~LgiyLLn~flaF 75 (180)
T COG5249 1 MDYDSSDTM-----NLITKMNDLKTLYQHYLDRLAPRPDVRWGITGGLFLLFCIRIWSTGGWYLICYCLGIYLLNAFLAF 75 (180)
T ss_pred CCchhHHHH-----HHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Confidence 566665532 255668899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCC----CCCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHH
Q 029276 93 LSPQIDPEY----SDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTM 168 (196)
Q Consensus 93 LtPk~Dp~l----~eg~~Lp~~~~dEFrPFiRRLPEFkFW~~~trat~ia~~~Tff~~fDiPVFWPILl~YFi~Lf~lTm 168 (196)
||||+||+. ||+....+++|||||||||||||||||+++||||++|++.|+|.+||||||||||++|||+|+..||
T Consensus 76 LTPKfdms~eq~e~d~eieeg~kd~EFrPFIRrLPEFkFWy~s~rat~~aLi~s~F~IfDvPVfwPILvvYfi~l~f~t~ 155 (180)
T COG5249 76 LTPKFDMSFEQIEDDDEIEEGEKDNEFRPFIRRLPEFKFWYFSTRATGMALIGSYFGIFDVPVFWPILVVYFIFLVFYTA 155 (180)
T ss_pred hCCCCcccHhhhccccccccccccchhhHHHHcCchhHHHHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHH
Confidence 999999998 3444555679999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCCCcchhhhhh
Q 029276 169 RRQIMHMIKYRYVPFSLGKQVLLI 192 (196)
Q Consensus 169 ~rqI~HMiKyrYvPf~~gK~~y~~ 192 (196)
|||||||+||||+|||.||++|++
T Consensus 156 rRqIqHM~KYrY~PfdigKkky~s 179 (180)
T COG5249 156 RRQIQHMKKYRYNPFDIGKKKYKS 179 (180)
T ss_pred HHHHHHHHHhcCCchhhhhhhhcc
Confidence 999999999999999999999986
No 4
>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain three or more transmembrane segments.
Probab=84.06 E-value=2.2 Score=37.85 Aligned_cols=43 Identities=16% Similarity=0.504 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 029276 130 CVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMI 176 (196)
Q Consensus 130 ~~trat~ia~~~Tff~~fDiPVFWPILl~YFi~Lf~lTm~rqI~HMi 176 (196)
+..-.+++|+++++++.. ||++.++||++.++++|.-.++++-
T Consensus 7 sq~~il~fa~Vla~~p~y----~~~~filYfiv~~~i~~~~~~Rs~r 49 (233)
T PF09973_consen 7 SQVSILLFAAVLAFFPQY----YFEVFILYFIVFFGIMIVMGIRSYR 49 (233)
T ss_pred HHHHHHHHHHHHHhccHH----HHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 445567888999988643 6899999999999999998888876
No 5
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=76.96 E-value=3.2 Score=29.24 Aligned_cols=22 Identities=32% Similarity=0.810 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 029276 157 LFYWLMLFTLTMRRQIMHMIKY 178 (196)
Q Consensus 157 l~YFi~Lf~lTm~rqI~HMiKy 178 (196)
.-|||+|-++..-..+-||.+|
T Consensus 4 awywivli~lv~~gy~~hmkry 25 (54)
T PF13260_consen 4 AWYWIVLIVLVVVGYFCHMKRY 25 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999987
No 6
>CHL00161 secY preprotein translocase subunit SecY; Validated
Probab=55.26 E-value=15 Score=34.51 Aligned_cols=110 Identities=15% Similarity=0.280 Sum_probs=58.3
Q ss_pred eccEEEeehhHHHHHHHHHHhhcCCCCCCCC------CCCCCCCCCCCC-CCCCcccC-CchhHHHHHHHHHHHHHHHHH
Q 029276 71 VQGFYIITYGLGIYLLNLLMGFLSPQIDPEY------SDGPTLPTRGSD-EFRPFVRR-LPEFKFWYCVTRSFCIGFVLT 142 (196)
Q Consensus 71 ~~g~YiVtY~LgIylLnlfi~FLtPk~Dp~l------~eg~~Lp~~~~d-EFrPFiRR-LPEFkFW~~~trat~ia~~~T 142 (196)
.+.+|+++|.+-+.+.+-+..+++ +||+. +.|...|+-++. +=.-+++| +|-..+|=++ -..++|.+..
T Consensus 294 ~~~~y~~~y~~lii~Fs~f~~~i~--~~p~~iA~~Lkk~g~~IpGvRpG~~T~~yL~~~i~~~t~~Ga~-~l~~la~~p~ 370 (417)
T CHL00161 294 FKILYLVLYFVLILFFSYFYSTIV--LNPKDISENLQKMAVSIPGIRPGKATTKYLKKTLNRLTLLGAL-FLAFIALLPN 370 (417)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHhHH-HHHHHHHHHH
Confidence 355688899888888888888887 88876 346666654433 11112222 2223333222 2333444445
Q ss_pred hhc-cCCCcchh---HHHHHHHHHHHHHHHHHHH-HHHhhhcccCCC
Q 029276 143 FFS-AFDVPVFW---PILLFYWLMLFTLTMRRQI-MHMIKYRYVPFS 184 (196)
Q Consensus 143 ff~-~fDiPVFW---PILl~YFi~Lf~lTm~rqI-~HMiKyrYvPf~ 184 (196)
++. .++++++. +.=++= ++=..+...||| .|+.+.+|-+|.
T Consensus 371 l~~~~~~~~~~~~~ggtslLI-~Vgv~~~~~~qi~a~~~~~~Y~~~~ 416 (417)
T CHL00161 371 LIESVLNLSVFKGLGTTSLLI-LVGVAIDTSRQIQTYLISNNYENMY 416 (417)
T ss_pred HHHHhcCcccccccchhhhhh-hHHHHHHHHHHHHHHHHHHhhcccc
Confidence 553 33556444 222222 222333334555 577888887763
No 7
>PF06703 SPC25: Microsomal signal peptidase 25 kDa subunit (SPC25); InterPro: IPR009582 This family consists of several microsomal signal peptidase 25 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains [].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=35.70 E-value=70 Score=25.81 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhhcc-----CCCcchhHHHHHHHHHHHHHHHHH
Q 029276 131 VTRSFCIGFVLTFFSA-----FDVPVFWPILLFYWLMLFTLTMRR 170 (196)
Q Consensus 131 ~trat~ia~~~Tff~~-----fDiPVFWPILl~YFi~Lf~lTm~r 170 (196)
+.-++++|.++.+++. -+-|+-+...+.||++..++|.-.
T Consensus 33 g~~a~~iA~~a~~~d~~~~f~~s~~~~~~~v~~YfiLs~il~~~~ 77 (162)
T PF06703_consen 33 GYLAVIIAGFAFFYDYKYPFPESKPYLIICVILYFILSGILTLYS 77 (162)
T ss_pred HHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777755 566788888889999998888743
No 8
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=33.18 E-value=18 Score=28.37 Aligned_cols=13 Identities=23% Similarity=0.611 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHH
Q 029276 53 RWVVCLAVVSIYA 65 (196)
Q Consensus 53 RW~~~~~L~~lf~ 65 (196)
||+++++++++++
T Consensus 1 RW~l~~iii~~i~ 13 (130)
T PF12273_consen 1 RWVLFAIIIVAIL 13 (130)
T ss_pred CeeeHHHHHHHHH
Confidence 7888887776554
No 9
>TIGR03097 PEP_O_lig_1 probable O-glycosylation ligase, exosortase system type 1-associated. These proteins are members of the O-antigen polymerase (wzy) family described by Pfam model pfam04932. This group is associated with genomes and ususally genomic contexts containing elements of the exosortase/PEP-CTERM protein export system, specificially the type 1 variety of this system described by the Genome Property, GenProp0652.
Probab=30.10 E-value=92 Score=28.55 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=39.6
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhccCCCc---chhHHHHHHHHHHHHHHHHHHHHHHhh
Q 029276 119 VRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVP---VFWPILLFYWLMLFTLTMRRQIMHMIK 177 (196)
Q Consensus 119 iRRLPEFkFW~~~trat~ia~~~Tff~~fDiP---VFWPILl~YFi~Lf~lTm~rqI~HMiK 177 (196)
++.-|+.++..-..-.++++.+.+..+....+ .+|++++++++....++-|++++.+..
T Consensus 69 ~~~~~~~~~lllf~~~~~ls~l~s~~~~~s~~~~~~~~~~~l~~~~~~~l~~~~~~l~~l~~ 130 (402)
T TIGR03097 69 IPWTPEVIFLLLLTIWMTVTTFFAFDPDVAFVQWDKVMKIFLMVLVTLMLISDRQRLHWLLW 130 (402)
T ss_pred CCCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 45677877776555555555444333332233 668899999999888888999887764
No 10
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=25.37 E-value=51 Score=26.27 Aligned_cols=30 Identities=13% Similarity=0.264 Sum_probs=16.0
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 029276 148 DVPVFWPILLFYWLMLFTLTMRRQIMHMIKYR 179 (196)
Q Consensus 148 DiPVFWPILl~YFi~Lf~lTm~rqI~HMiKyr 179 (196)
|++.++|+.+++-++. +..|.|-|-+.+|+
T Consensus 2 ~~~~il~~vv~~~i~y--f~iRPQkKr~Ke~~ 31 (113)
T PRK06531 2 GIPTIIMFVVMLGLIF--FMQRQQKKQAQERQ 31 (113)
T ss_pred chHHHHHHHHHHHHHH--heechHHHHHHHHH
Confidence 4566666555444332 23666666655553
No 11
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=24.83 E-value=1e+02 Score=24.09 Aligned_cols=18 Identities=17% Similarity=0.364 Sum_probs=8.4
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 029276 152 FWPILLFYWLMLFTLTMR 169 (196)
Q Consensus 152 FWPILl~YFi~Lf~lTm~ 169 (196)
+|=|+++-++++++++++
T Consensus 4 l~~iii~~i~l~~~~~~~ 21 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYC 21 (130)
T ss_pred eHHHHHHHHHHHHHHHHH
Confidence 444545444444444443
No 12
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=23.04 E-value=75 Score=25.21 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=14.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029276 151 VFWPILLFYWLMLFTLTMRRQIMHMIKY 178 (196)
Q Consensus 151 VFWPILl~YFi~Lf~lTm~rqI~HMiKy 178 (196)
.+.|++++..++.| +.+|.|-|-+.++
T Consensus 6 ~ll~lv~i~~i~yF-~~iRPQkKr~K~~ 32 (109)
T PRK05886 6 LFLPFLLIMGGFMY-FASRRQRKAMQAT 32 (109)
T ss_pred HHHHHHHHHHHHHH-HHccHHHHHHHHH
Confidence 45566666544444 4467776655544
No 13
>COG0817 RuvC Holliday junction resolvasome, endonuclease subunit [DNA replication, recombination, and repair]
Probab=21.09 E-value=54 Score=27.86 Aligned_cols=40 Identities=15% Similarity=0.066 Sum_probs=20.9
Q ss_pred HHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029276 139 FVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKY 178 (196)
Q Consensus 139 ~~~Tff~~fDiPVFWPILl~YFi~Lf~lTm~rqI~HMiKy 178 (196)
++.---.-.++..|-|-.+==-++=..=.=|+||+||+|.
T Consensus 86 ~la~~~~~l~v~eY~p~~VKkavvG~G~A~K~QVq~MV~~ 125 (160)
T COG0817 86 LLAAARRGLPVFEYTPNQVKKAVVGNGKADKEQVQHMVKR 125 (160)
T ss_pred HHHHHHcCCChhhccHHHHHHHhhcCCcccHHHHHHHHHH
Confidence 3333344455555555544322222223348999999984
No 14
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2. Members of this family are restricted to the Firmicutes lineage (low-GC Gram-positive bacteria) and appear to be paralogous to, and much more divergent than, the preprotein translocase SecY. Members include the SecY2 protein of the accessory Sec system in Streptococcus gordonii, involved in export of the highly glycosylated platelet-binding protein GspB.
Probab=20.16 E-value=1.5e+02 Score=27.77 Aligned_cols=108 Identities=19% Similarity=0.291 Sum_probs=57.4
Q ss_pred eccEEEeehhHHHHHHHHHHhhcCCCCCCCC------CCCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHHHHHh-
Q 029276 71 VQGFYIITYGLGIYLLNLLMGFLSPQIDPEY------SDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTF- 143 (196)
Q Consensus 71 ~~g~YiVtY~LgIylLnlfi~FLtPk~Dp~l------~eg~~Lp~~~~dEFrPFiRRLPEFkFW~~~trat~ia~~~Tf- 143 (196)
.+-+|.+.|.+-|..++-|.+++ .+||+. +.|...|+-+.+ ++=.|-|-.--.=.++..+..+++++.+
T Consensus 273 ~~~~~~i~y~~lii~fs~fys~i--~~nP~diA~~Lkk~g~~IpGiRpG--~~T~~yL~~~i~~~t~~Gai~l~~ia~lP 348 (395)
T TIGR02920 273 SSPVGILIYLILQMLLSYFFTFV--NINPKEISKSFRKSGNYIPGIAPG--KDTQRYLNRLARRFCWFGGVFNAFQLGIP 348 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHHh--eECHHHHHHHHHHCCCCccCcCCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999898887 678876 356677765543 3433333333333344444444444333
Q ss_pred --hc-cCC-Ccch--hHHHHHHHHHHHHHHHHHHHH-HHhhhcccCC
Q 029276 144 --FS-AFD-VPVF--WPILLFYWLMLFTLTMRRQIM-HMIKYRYVPF 183 (196)
Q Consensus 144 --f~-~fD-iPVF--WPILl~YFi~Lf~lTm~rqI~-HMiKyrYvPf 183 (196)
.+ .++ ..-+ =|.= +.-++=.++--.|||+ |+.+.||-.+
T Consensus 349 ~~~~~~~~~~~~~~~ggts-llI~vgv~ldt~~qi~~~~~~~~Y~~~ 394 (395)
T TIGR02920 349 LYFALFVPHLLTEAYIPGQ-FMMITGMSFNIADEIRTILYFDRYKPL 394 (395)
T ss_pred HHHHHHhccccceeehhhh-hhhhhhhHHhHHHHHHHHHHHHhhCCC
Confidence 32 222 2111 1111 2223334444456665 6667776543
Done!