Query 029276
Match_columns 196
No_of_seqs 111 out of 239
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 16:47:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029276.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029276hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3owt_C Regulatory protein SIR3 37.0 8.8 0.0003 22.6 0.4 15 31-45 13-27 (27)
2 3r84_A Mediator of RNA polymer 28.3 33 0.0011 25.2 2.4 24 165-188 60-86 (86)
3 2rdd_B UPF0092 membrane protei 26.1 74 0.0025 19.3 3.4 27 152-179 6-32 (37)
4 3din_C Preprotein translocase 24.3 74 0.0025 29.0 4.4 108 73-184 304-422 (431)
5 3j01_A Preprotein translocase 17.8 1.4E+02 0.0049 27.2 4.9 112 73-191 308-432 (435)
6 3dl8_G Preprotein translocase 17.2 61 0.0021 29.5 2.2 27 73-101 309-335 (429)
7 2hac_A T-cell surface glycopro 13.8 1.3E+02 0.0045 18.6 2.4 19 154-172 10-28 (33)
8 1u84_A Hypothetical protein; s 11.9 1.2E+02 0.0042 22.2 2.2 23 168-191 9-31 (90)
9 1v74_A Colicin D; colicin D - 11.9 95 0.0033 23.8 1.7 12 169-180 12-23 (107)
10 3fcn_A AN alpha-helical protei 8.6 1.2E+02 0.0042 24.4 1.3 15 168-182 62-76 (164)
No 1
>3owt_C Regulatory protein SIR3; RCT domain, protein binding; 2.00A {Saccharomyces cerevisiae}
Probab=36.99 E-value=8.8 Score=22.61 Aligned_cols=15 Identities=27% Similarity=0.514 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhhc
Q 029276 31 WKYNVSRRYQHLLDK 45 (196)
Q Consensus 31 ~~~~~~~~yQ~~LDk 45 (196)
..++++.+||..||+
T Consensus 13 tlsklkkkyqiildr 27 (27)
T 3owt_C 13 TLSKLKKKYQIILDR 27 (27)
T ss_pred HHHHHHhhheeeecC
Confidence 467899999999995
No 2
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=28.28 E-value=33 Score=25.18 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=15.2
Q ss_pred HHHHHHHHHHH---hhhcccCCCcchh
Q 029276 165 TLTMRRQIMHM---IKYRYVPFSLGKQ 188 (196)
Q Consensus 165 ~lTm~rqI~HM---iKyrYvPf~~gK~ 188 (196)
...|||||+|| |--+-+|-+.+||
T Consensus 60 ~v~LrkEIk~LdEnig~~~LPinv~~k 86 (86)
T 3r84_A 60 TTQLRKEIQLLDENVGTRLLPINVNKK 86 (86)
T ss_dssp HHHHHHHHHHHHHTBTTTBCCC-----
T ss_pred HHHHHHHHHHHHHccCCeeecccCCCC
Confidence 45789999999 6677788777664
No 3
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=26.13 E-value=74 Score=19.31 Aligned_cols=27 Identities=11% Similarity=0.305 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 029276 152 FWPILLFYWLMLFTLTMRRQIMHMIKYR 179 (196)
Q Consensus 152 FWPILl~YFi~Lf~lTm~rqI~HMiKyr 179 (196)
++|+++ -+++++.+..|.|-|...+++
T Consensus 6 ~l~~v~-~~~ifYFl~iRPQ~Kr~K~~~ 32 (37)
T 2rdd_B 6 ILMLVV-FGLIFYFMILRPQQKRTKEHK 32 (37)
T ss_dssp HHHHHH-HHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHH-HHHHHHHHHhhhHHHHHHHHH
Confidence 344443 345566677788887777664
No 4
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=24.29 E-value=74 Score=29.04 Aligned_cols=108 Identities=17% Similarity=0.230 Sum_probs=53.0
Q ss_pred cEEEeehhHHHHHHHHHHhhcCCCCCCCC------CCCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHH---HHHh
Q 029276 73 GFYIITYGLGIYLLNLLMGFLSPQIDPEY------SDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGF---VLTF 143 (196)
Q Consensus 73 g~YiVtY~LgIylLnlfi~FLtPk~Dp~l------~eg~~Lp~~~~dEFrPFiRRLPEFkFW~~~trat~ia~---~~Tf 143 (196)
-+|.+.|++.|....-|-.+++ +||+. +.|...|+-++. ||=.+-|..--.=.....|..+++ +..+
T Consensus 304 ~~y~~~y~~lii~Fs~fy~~i~--~np~diA~~lkk~G~~IpGiRpG--~~T~~yL~~vi~rit~~Ga~~L~~iavlp~~ 379 (431)
T 3din_C 304 FLYLLIYGLLVFFFTYFYSVVI--FDPREISENIRKYGGYIPGLRPG--RSTEQYLHRVLNRVTFIGAVFLVVIALLPYL 379 (431)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCT--THHHHHTTSCCCCBCSSCCCCCT--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHCCCcCCCCCCC--hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3566778777888888888876 78865 224444443332 121111111111112233333333 3345
Q ss_pred hcc-CCCcchhHHHHHHHHHHHHHHHHHHH-HHHhhhcccCCC
Q 029276 144 FSA-FDVPVFWPILLFYWLMLFTLTMRRQI-MHMIKYRYVPFS 184 (196)
Q Consensus 144 f~~-fDiPVFWPILl~YFi~Lf~lTm~rqI-~HMiKyrYvPf~ 184 (196)
+.. +++|.+-.---+--++-.++...+|| .|++.++|-.|-
T Consensus 380 ~~~~~g~~~~~gGTslLI~Vgv~l~~~~qi~s~~~~~~Y~g~~ 422 (431)
T 3din_C 380 VQGAIKVNVWIGGTSALIAVGVALDIIQQMETHMVMRHYEGFI 422 (431)
T ss_dssp HTTTSCCSCCTTHHHHHHHHHHHHHHHHHHHHHCCCCCSSTTC
T ss_pred HHHHhCCCccccchhhhhhHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 443 56763322110111222334344455 688999999884
No 5
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y
Probab=17.80 E-value=1.4e+02 Score=27.16 Aligned_cols=112 Identities=16% Similarity=0.295 Sum_probs=57.9
Q ss_pred cEEEeehhHHHHHHHHHHhhcCCCCCCCC------CCCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHH---HHHHh
Q 029276 73 GFYIITYGLGIYLLNLLMGFLSPQIDPEY------SDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIG---FVLTF 143 (196)
Q Consensus 73 g~YiVtY~LgIylLnlfi~FLtPk~Dp~l------~eg~~Lp~~~~dEFrPFiRRLPEFkFW~~~trat~ia---~~~Tf 143 (196)
-.|.+.|++-|....-|..++ .+||+. +.|...|+-++. +|=.+-|-.--.=.....|+.++ .+..+
T Consensus 308 ~~~~~~y~~lii~F~~fyt~i--~~np~diA~~lkk~G~~IpGiRpG--~~T~~yL~~vi~rit~~Ga~~L~~iavlP~~ 383 (435)
T 3j01_A 308 PLYVLLYASAIIFFCFFYTAL--VFNPRETADNLKKSGAFVPGIRPG--EQTAKYIDKVMTRLTLVGALYITFICLIPEF 383 (435)
T ss_dssp GGGTHHHHHHHHHHHHHHHHH--SSCTTHHHHHTTSTTCSSSCCSSS--SSSCSHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH--ccCHHHHHHHHHHcCCcCCCcCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357778888888888887777 578876 446666664442 12111111111112223333333 33455
Q ss_pred hc-cCCCcchhH---HHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhh
Q 029276 144 FS-AFDVPVFWP---ILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQVLL 191 (196)
Q Consensus 144 f~-~fDiPVFWP---ILl~YFi~Lf~lTm~rqI~HMiKyrYvPf~~gK~~y~ 191 (196)
+. .+++|.+-. +|+ -+..-.=|+++--.||+.++|-.|-- |.|++
T Consensus 384 l~~~~~~~~~~gGTslLI--~VgV~ldt~~qi~s~l~~~~Y~g~~~-~~~~~ 432 (435)
T 3j01_A 384 MRDAMKVPFYFGGTSLLI--VVVVIMDFMAQVQTLMMSSQYESALK-KANLK 432 (435)
T ss_dssp TTSCCSSSSSSCCHHHHH--THHHHHHHHHHHHHHTSCCCCCCSCS-CCCCC
T ss_pred HHHhhccCeecccHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHh-hcccC
Confidence 44 356664311 111 12222235555556889999998842 44443
No 6
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=17.17 E-value=61 Score=29.52 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=20.8
Q ss_pred cEEEeehhHHHHHHHHHHhhcCCCCCCCC
Q 029276 73 GFYIITYGLGIYLLNLLMGFLSPQIDPEY 101 (196)
Q Consensus 73 g~YiVtY~LgIylLnlfi~FLtPk~Dp~l 101 (196)
-.|.+.|++.|....-|-.+++ +||+.
T Consensus 309 ~~y~~~y~~lii~Fs~fy~~i~--~np~d 335 (429)
T 3dl8_G 309 IFYNFLYVTFIVFFTYFYTAVL--INPVE 335 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCT--THHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHc--cCHHH
Confidence 3577788888888888888876 88875
No 7
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=13.80 E-value=1.3e+02 Score=18.59 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 029276 154 PILLFYWLMLFTLTMRRQI 172 (196)
Q Consensus 154 PILl~YFi~Lf~lTm~rqI 172 (196)
-||++|=|+++.+-.|..+
T Consensus 10 giL~iYgii~T~Ly~R~K~ 28 (33)
T 2hac_A 10 GILFIYGVILTALFLRVKF 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3799999999999988654
No 8
>1u84_A Hypothetical protein; structural genomics, protein structure initiative, MCSG, PSI center for structural genomics; 1.60A {Geobacillus stearothermophilus} SCOP: a.230.1.1 PDB: 3r2x_C*
Probab=11.93 E-value=1.2e+02 Score=22.24 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=19.9
Q ss_pred HHHHHHHHhhhcccCCCcchhhhh
Q 029276 168 MRRQIMHMIKYRYVPFSLGKQVLL 191 (196)
Q Consensus 168 m~rqI~HMiKyrYvPf~~gK~~y~ 191 (196)
|.+++.|+|+ .+-||..|+.-|.
T Consensus 9 ~~~~~~~iI~-~WDPf~~g~D~Y~ 31 (90)
T 1u84_A 9 LNRLLLEWIG-AWDPFGLGKDAYD 31 (90)
T ss_dssp HHHHHHHHHH-HHCTTSSCGGGGH
T ss_pred HHHHHHHHHH-cCCCCcCCCccch
Confidence 7789999998 4899999998885
No 9
>1v74_A Colicin D; colicin D - IMMD complex, cytotoxicity, transfer RNAse, protein-protein inhibition; HET: 1PE; 2.00A {Escherichia coli} SCOP: d.243.1.1 PDB: 1tfo_A 1tfk_A*
Probab=11.90 E-value=95 Score=23.77 Aligned_cols=12 Identities=25% Similarity=0.135 Sum_probs=10.6
Q ss_pred HHHHHHHhhhcc
Q 029276 169 RRQIMHMIKYRY 180 (196)
Q Consensus 169 ~rqI~HMiKyrY 180 (196)
++|.+||-||..
T Consensus 12 ~~qLqkkfkHa~ 23 (107)
T 1v74_A 12 RKQLDKKYKHAG 23 (107)
T ss_dssp HHHHHHHGGGGG
T ss_pred HHHHHhHhcccc
Confidence 799999999765
No 10
>3fcn_A AN alpha-helical protein of unknown function (PFA; DUF29 family protein, structural genomics; HET: MSE; 1.45A {Rhodospirillum rubrum atcc 11170}
Probab=8.63 E-value=1.2e+02 Score=24.39 Aligned_cols=15 Identities=20% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhcccC
Q 029276 168 MRRQIMHMIKYRYVP 182 (196)
Q Consensus 168 m~rqI~HMiKyrYvP 182 (196)
+++.|.|++|++|.|
T Consensus 62 L~~Ll~HLLKwqyqp 76 (164)
T 3fcn_A 62 VRQICVRVIMAMSAP 76 (164)
T ss_dssp HHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhh
Done!