Query 029276
Match_columns 196
No_of_seqs 111 out of 239
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 16:48:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029276.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029276hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dlca3 f.1.3.1 (A:61-289) del 13.7 1.7E+02 0.012 21.9 5.9 47 134-180 7-61 (229)
2 d1u84a_ a.230.1.1 (A:) hypothe 12.0 57 0.0041 22.2 2.2 24 167-191 3-26 (81)
3 d1veha_ d.52.8.1 (A:) HIRA-int 11.2 44 0.0032 22.6 1.4 19 164-183 61-79 (92)
4 d1k8ia2 d.19.1.1 (A:11-92) Cla 9.6 39 0.0028 23.1 0.6 14 117-130 38-51 (82)
5 d1hdma2 d.19.1.1 (A:13-93) Cla 9.1 37 0.0027 23.2 0.3 14 117-130 39-52 (81)
6 d1xmea1 f.24.1.1 (A:14-562) Ba 8.7 65 0.0047 27.9 1.9 56 80-135 467-524 (549)
7 d1k8ba_ d.241.1.1 (A:) Transla 6.7 75 0.0055 19.3 1.0 15 164-178 17-31 (52)
8 d2q07a3 d.17.6.5 (A:394-459) U 6.6 76 0.0055 20.3 0.9 14 168-181 5-18 (66)
9 d1josa_ d.52.7.1 (A:) Ribosome 5.4 1.3E+02 0.0095 19.6 1.7 15 168-182 72-86 (100)
10 d1g94a2 c.1.8.1 (A:1-354) Bact 5.1 97 0.0071 23.4 0.9 10 170-179 340-349 (354)
No 1
>d1dlca3 f.1.3.1 (A:61-289) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis tenebrionis, CRYIIIA (BT13) [TaxId: 1444]}
Probab=13.73 E-value=1.7e+02 Score=21.86 Aligned_cols=47 Identities=17% Similarity=0.219 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhccCCCcchhHHHHHHHHHHHHH--------HHHHHHHHHhhhcc
Q 029276 134 SFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTL--------TMRRQIMHMIKYRY 180 (196)
Q Consensus 134 at~ia~~~Tff~~fDiPVFWPILl~YFi~Lf~l--------Tm~rqI~HMiKyrY 180 (196)
.+.++++.+......+|+-=+++-++..++=.+ .|.+|++.||..+=
T Consensus 7 ~~~~~i~~~il~~~~~P~~g~~~~~~~~i~~~lwP~~~~w~~~~~~ve~lId~~i 61 (229)
T d1dlca3 7 QKGISVVGDLLGVVGFPFGGALVSFYTNFLNTIWPSEDPWKAFMEQVEALMDQKI 61 (229)
T ss_dssp HHHHHHHHHHTTSCBSCCHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence 466777777777777887655443332222222 67889999987663
No 2
>d1u84a_ a.230.1.1 (A:) hypothetical protein YugE {Bacillus stearothermophilus [TaxId: 1422]}
Probab=11.97 E-value=57 Score=22.16 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhhcccCCCcchhhhh
Q 029276 167 TMRRQIMHMIKYRYVPFSLGKQVLL 191 (196)
Q Consensus 167 Tm~rqI~HMiKyrYvPf~~gK~~y~ 191 (196)
-|.++.-|+|| ++-||-.|...|.
T Consensus 3 ~~n~~m~~~i~-~WDPF~~G~d~Ye 26 (81)
T d1u84a_ 3 QLNRLLLEWIG-AWDPFGLGKDAYD 26 (81)
T ss_dssp HHHHHHHHHHH-HHCTTSSCGGGGH
T ss_pred HHHHHHHHHHH-ccCCcccCccchh
Confidence 37888889988 6899999999884
No 3
>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.24 E-value=44 Score=22.62 Aligned_cols=19 Identities=26% Similarity=0.679 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhhhcccCC
Q 029276 164 FTLTMRRQIMHMIKYRYVPF 183 (196)
Q Consensus 164 f~lTm~rqI~HMiKyrYvPf 183 (196)
-..|+|..|++|+|+ ++|-
T Consensus 61 s~~Tlk~~Ie~~L~~-~vpe 79 (92)
T d1veha_ 61 SIITLKSGIQNMLQF-YIPE 79 (92)
T ss_dssp HHHHTHHHHHHHHHH-HCSS
T ss_pred HHHHHHHHHHHHHHH-HCCC
Confidence 457888888888887 4463
No 4
>d1k8ia2 d.19.1.1 (A:11-92) Class II MHC alpha chain, N-terminal domain {Mouse (Mus musculus), H2-DM [TaxId: 10090]}
Probab=9.60 E-value=39 Score=23.10 Aligned_cols=14 Identities=43% Similarity=0.731 Sum_probs=11.4
Q ss_pred CcccCCchhHHHHH
Q 029276 117 PFVRRLPEFKFWYC 130 (196)
Q Consensus 117 PFiRRLPEFkFW~~ 130 (196)
--+.|||||.=|-.
T Consensus 38 ~rvPrLPefa~Wa~ 51 (82)
T d1k8ia2 38 TRVPRLPDFAEWAQ 51 (82)
T ss_dssp EEEESSTTTTHHHH
T ss_pred ccccCCCccccccc
Confidence 34779999999965
No 5
>d1hdma2 d.19.1.1 (A:13-93) Class II MHC alpha chain, N-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}
Probab=9.13 E-value=37 Score=23.17 Aligned_cols=14 Identities=50% Similarity=0.738 Sum_probs=11.1
Q ss_pred CcccCCchhHHHHH
Q 029276 117 PFVRRLPEFKFWYC 130 (196)
Q Consensus 117 PFiRRLPEFkFW~~ 130 (196)
--+.|||||+=|-.
T Consensus 39 ~rvPrLPefa~Wa~ 52 (81)
T d1hdma2 39 TRVPRLPEFADWAQ 52 (81)
T ss_dssp EEEESSGGGGGGTT
T ss_pred ccccCCCccccchh
Confidence 34779999999963
No 6
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=8.74 E-value=65 Score=27.95 Aligned_cols=56 Identities=23% Similarity=0.446 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHhhcCCCCCCCCCCCC--CCCCCCCCCCCCcccCCchhHHHHHHHHHH
Q 029276 80 GLGIYLLNLLMGFLSPQIDPEYSDGP--TLPTRGSDEFRPFVRRLPEFKFWYCVTRSF 135 (196)
Q Consensus 80 ~LgIylLnlfi~FLtPk~Dp~l~eg~--~Lp~~~~dEFrPFiRRLPEFkFW~~~trat 135 (196)
+..+++.|++....+.+..|+.++++ ......+.|=++=.+.||+.|+|.-..-+.
T Consensus 467 g~l~f~~nl~~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~w~~~~~~l 524 (549)
T d1xmea1 467 ALLLFIYGLFSVLLSRERKPELAEAPLPFAEVISGPEDRRLVLAMDRIGFWFAVAAIL 524 (549)
T ss_dssp HHHHHHHHHHHHHTCCCCCHHHHSSCCCCCCBCCCSSHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCCCCCCCCcccCCccHHHHHHHHHH
Confidence 34567888888888777665532222 111222222223345789999997654433
No 7
>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=6.70 E-value=75 Score=19.28 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhhh
Q 029276 164 FTLTMRRQIMHMIKY 178 (196)
Q Consensus 164 f~lTm~rqI~HMiKy 178 (196)
.|-.|+|.-+|+.||
T Consensus 17 I~~~L~R~p~hv~kf 31 (52)
T d1k8ba_ 17 LAKAVNRDEEFFAKY 31 (52)
T ss_dssp HHHHHHTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHH
Confidence 356789999999987
No 8
>d2q07a3 d.17.6.5 (A:394-459) Uncharacterized protein AF0587 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=6.60 E-value=76 Score=20.25 Aligned_cols=14 Identities=36% Similarity=0.771 Sum_probs=11.6
Q ss_pred HHHHHHHHhhhccc
Q 029276 168 MRRQIMHMIKYRYV 181 (196)
Q Consensus 168 m~rqI~HMiKyrYv 181 (196)
-||...||..|.+=
T Consensus 5 yrrilehmlsyqfg 18 (66)
T d2q07a3 5 YRRILEHMLSYQFG 18 (66)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhhc
Confidence 38889999999863
No 9
>d1josa_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Haemophilus influenzae [TaxId: 727]}
Probab=5.43 E-value=1.3e+02 Score=19.64 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=11.3
Q ss_pred HHHHHHHHhhhcccC
Q 029276 168 MRRQIMHMIKYRYVP 182 (196)
Q Consensus 168 m~rqI~HMiKyrYvP 182 (196)
+|+++.+.++-||+|
T Consensus 72 ir~~la~~l~~r~~P 86 (100)
T d1josa_ 72 IRSLLGKAMRLRIVP 86 (100)
T ss_dssp HHHHHHHHHCCSSCC
T ss_pred HHHHHHHhcCCccCC
Confidence 367777777888887
No 10
>d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]}
Probab=5.11 E-value=97 Score=23.39 Aligned_cols=10 Identities=20% Similarity=0.331 Sum_probs=0.0
Q ss_pred HHHHHHhhhc
Q 029276 170 RQIMHMIKYR 179 (196)
Q Consensus 170 rqI~HMiKyr 179 (196)
|||+.|||.|
T Consensus 340 ~~i~~mi~fr 349 (354)
T d1g94a2 340 SYIAGGVDFR 349 (354)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Done!