BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029277
(196 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FVV|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1
pdb|2Q9P|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1,
Mg-F Complex
Length = 194
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 69/131 (52%), Gaps = 18/131 (13%)
Query: 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGM-LFPKGGWEIDESIQEAALR 95
G ++ C+ +R +E + EVL++SS + + P GG E +E AA+R
Sbjct: 38 GYKKRAACLCFR----------SESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVR 87
Query: 96 ETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEK-NV-RSRKWM 153
E EEAGV G + L+G + + R H T Y++ L+V + L +W + N+ R R+W
Sbjct: 88 EVCEEAGVKGTL-GRLVGIFENQERKHRT----YVYVLIVTEVLEDWEDSVNIGRKREWF 142
Query: 154 SVAEARKVCQH 164
+ +A KV Q+
Sbjct: 143 KIEDAIKVLQY 153
>pdb|2DUK|A Chain A, Crystal Structure Of Ms0616
pdb|2DUK|B Chain B, Crystal Structure Of Ms0616
Length = 138
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 70/132 (53%), Gaps = 18/132 (13%)
Query: 35 QKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGM-LFPKGGWEIDESIQEAA 93
++G ++ C+ +R +E++ EVL++SS + + P GG E +E AA
Sbjct: 6 REGFKKRAACLCFR----------SEQEDEVLLVSSSRYPDQWIVPGGGMEPEEEPGGAA 55
Query: 94 LRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEK-NV-RSRK 151
+RE EEAGV G + LLG + + R H T Y++ L V + L +W + N+ R R+
Sbjct: 56 VREVYEEAGVKGKL-GRLLGIFENQDRKHRT----YVYVLTVTEILEDWEDSVNIGRKRE 110
Query: 152 WMSVAEARKVCQ 163
W V +A KV Q
Sbjct: 111 WFKVEDAIKVLQ 122
>pdb|3MCF|A Chain A, Crystal Structure Of Human Diphosphoinositol Polyphosphate
Phosphohydrolase 3-Alpha
pdb|3MCF|B Chain B, Crystal Structure Of Human Diphosphoinositol Polyphosphate
Phosphohydrolase 3-Alpha
Length = 136
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 8/106 (7%)
Query: 61 EDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSR 120
ED +LV SS+ + P GG E +E AA+RE EEAGV G + LLG + +
Sbjct: 15 EDEVLLVSSSRYPDRWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKL-GRLLGVFE---Q 70
Query: 121 AHNTDYQGYMFPLLVQDQLAEWPEKNV---RSRKWMSVAEARKVCQ 163
+ +++ Y++ L V + L +W E +V R R+W V +A KV Q
Sbjct: 71 NQDPEHRTYVYVLTVTELLEDW-EDSVSIGRKREWFKVEDAIKVLQ 115
>pdb|3I7U|A Chain A, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|B Chain B, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|C Chain C, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|D Chain D, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7V|A Chain A, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
pdb|3I7V|B Chain B, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
Length = 134
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 62 DLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF-KSR 120
D EVL+I + FPKG E E +E A+RE EE GV G + + +GE ++ +
Sbjct: 14 DGEVLLIKTP-SNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEI-LDYIGEIHYWYTL 71
Query: 121 AHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDR 173
++ + L+ + P V+ K+ + EA+K+ ++ KE ++
Sbjct: 72 KGERIFKTVKYYLMKYKEGEPRPSWEVKDAKFFPIKEAKKLLKYKGDKEIFEK 124
>pdb|2AZW|A Chain A, Crystal Structure Of The Mutt/nudix Family Protein From
Enterococcus Faecalis
Length = 148
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 12/140 (8%)
Query: 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRE 96
G+R+ RY + +++ + +V+ P G E E+ +EA RE
Sbjct: 7 GKREETLTYQTRYAAY---IIVSKPENNTMVLVQAPNGAYFLPGGEIEGTETKEEAIHRE 63
Query: 97 TIEEAGVTGIVECELLGEWN--FKSRAHNTDY--QGYMFPLLVQDQLAEWPEKNVRSRKW 152
+EE G++ + C LGE + F S T Y GY + QL+E P + + W
Sbjct: 64 VLEELGISVEIGC-YLGEADEYFYSNHRQTAYYNPGYFYVANTWRQLSE-PLERTNTLHW 121
Query: 153 MSVAEARKVCQ---HWWMKE 169
++ EA ++ + H W E
Sbjct: 122 VAPEEAVRLLKRGSHRWAVE 141
>pdb|1VC8|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VC8|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VCD|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
pdb|1VCD|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
Length = 126
Score = 33.9 bits (76), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 11/102 (10%)
Query: 64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHN 123
EVL++ + G +FPKG E ES++EAA+RE EE GV V L + +R N
Sbjct: 15 EVLLLRDRMGF-WVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPL-----YPTRYVN 68
Query: 124 T---DYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVC 162
+ + + F L++ + A E+ + W S EAR +
Sbjct: 69 PKGVEREVHWF--LMRGEGAPRLEEGMTGAGWFSPEEARALL 108
>pdb|2QJT|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2QJT|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2R5W|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
pdb|2R5W|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
Length = 352
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 18/107 (16%)
Query: 70 SQKGKGM-LFPKGGWEIDESIQEAALRETIEEAGVTGIVE-------CELLGEWNFKS-R 120
+ GK + P G E DE+I +A +RE EE + E CE + ++ +S R
Sbjct: 228 AHPGKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQLAIAKRCEKVFDYPDRSVR 287
Query: 121 AHNTDYQGYMFPLLVQDQLAEWPEKN----VRSRKWMSV-AEARKVC 162
+ G L V DQ PE N + KW+S+ + + +C
Sbjct: 288 GRTISHVG----LFVFDQWPSLPEINAADDAKDVKWISLGSNIKNIC 330
>pdb|3U53|A Chain A, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|B Chain B, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|C Chain C, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|D Chain D, Crystal Structure Of Human Ap4a Hydrolase
Length = 155
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 63/145 (43%), Gaps = 26/145 (17%)
Query: 40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-KGMLFPKGGWEIDESIQEAALRETI 98
+ G I +R +C+ +D N +E L++ + G PKG E E E ALRET
Sbjct: 4 RACGLIIFR-RCLIPKVDNNA--IEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRETQ 60
Query: 99 EEAGVTG----IVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSR---- 150
EEAG+ I+E FK +Y P V LAE + +V R
Sbjct: 61 EEAGIEAGQLTIIE-------GFKR---ELNYVARNKPKTVIYWLAEVKDYDVEIRLSHE 110
Query: 151 ----KWMSVAEARKVCQHWWMKEAL 171
+W+ + EA ++ Q MK AL
Sbjct: 111 HQAYRWLGLEEACQLAQFKEMKAAL 135
>pdb|3FJY|A Chain A, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
pdb|3FJY|B Chain B, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
Length = 364
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 71/162 (43%), Gaps = 35/162 (21%)
Query: 61 EDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVT---GIVECEL---LGE 114
+ +EV ++ K +PKG E +E+ + AA+RE EE G G CE+ L E
Sbjct: 36 DSIEVCIVHRPKYDDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPYLCEVEYPLSE 95
Query: 115 WNFKSR-AHN--TDYQGYMF----PLLVQD-----------QLAEWPEKNVRSRKWMSVA 156
K+R +H+ D + ++ P+ D A+ E N W+SV
Sbjct: 96 EGKKTRHSHDCTADTKHTLYWXAQPISADDAEHLLDAFGPVHRADVGEIN--DIVWVSVR 153
Query: 157 EARKVCQHWWMKEALDRLVMRL-----TSQQL----HGKEDS 189
EARK+ H K+ L V R+ T+Q L H K +S
Sbjct: 154 EARKILSHSTDKDTLAVFVDRVQEGAATAQNLLIVRHAKAES 195
>pdb|1VC9|A Chain A, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
pdb|1VC9|B Chain B, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
Length = 126
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 11/102 (10%)
Query: 64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHN 123
EVL++ + G +FPKG E ES++EAA+RE E+ GV V L + +R N
Sbjct: 15 EVLLLRDRMGF-WVFPKGHPEPGESLEEAAVREVWEQTGVRAEVLLPL-----YPTRYVN 68
Query: 124 T---DYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVC 162
+ + + F L++ + A E+ + W S EAR +
Sbjct: 69 PKGVEREVHWF--LMRGEGAPRLEEGMTGAGWFSPEEARALL 108
>pdb|2B06|A Chain A, Crystal Structure Of The MuttNUDIX FAMILY PROTEIN FROM
STREPTOCOCCUS Pneumoniae
Length = 155
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 51 CVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECE 110
C+ + L+ ++ + + G FP G E DE+ E+ +RE EE G+T I +
Sbjct: 13 CLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLT-IQNPQ 71
Query: 111 LLG 113
L+G
Sbjct: 72 LVG 74
>pdb|3R03|A Chain A, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
pdb|3R03|B Chain B, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
Length = 144
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 60 EEDLEVLVISSQKGKGML----FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW 115
+ D VL+ GK + FP G E E+ + A +RE EE GV C L
Sbjct: 17 DPDGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASC--LAPL 74
Query: 116 NFKSRAHNT 124
F S +++T
Sbjct: 75 AFASHSYDT 83
>pdb|3EXQ|A Chain A, Crystal Structure Of A Nudix Family Hydrolase From
Lactobacillus Brevis
Length = 161
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 75 GMLFPKGGWEIDESIQEAALRETIEEAG--VTGIVECELLGEWNFKSRAH 122
G FP G E+ E AA+RE EE G ++G+ C EW R H
Sbjct: 38 GHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTFCGTC-EWFDDDRQH 86
>pdb|1XSA|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant)
pdb|1XSB|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant) In Complex With Atp. No Atp
Restraints Included
pdb|1XSC|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (e63a Mutant) In Complex With Atp
Length = 153
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 26/145 (17%)
Query: 40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-KGMLFPKGGWEIDESIQEAALRETI 98
+ G I +R +C+ +D N +E L++ + G PKG E E E ALR T
Sbjct: 9 RACGLIIFR-RCLIPKVDNNA--IEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQ 65
Query: 99 EEAGVTG----IVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSR---- 150
EEAG+ I+E FK +Y P V LAE + +V R
Sbjct: 66 EEAGIEAGQLTIIE-------GFKR---ELNYVARNKPKTVIYWLAEVKDYDVEIRLSHE 115
Query: 151 ----KWMSVAEARKVCQHWWMKEAL 171
+W+ + EA ++ Q MK AL
Sbjct: 116 HQAYRWLGLEEACQLAQFKEMKAAL 140
>pdb|2B0V|A Chain A, Nudix Hydrolase From Nitrosomonas Europaea
Length = 153
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 58 INEEDLEVLVISSQKGKGMLF--PKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW 115
I ++D +LV +G + P G E ESI +A RE +EE G + + E L G +
Sbjct: 15 IEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEV-LTGIY 73
Query: 116 NFKSRAHNTDYQGYMFPLLVQDQLAEW-PEKNVRS----RKWMSVAEAR 159
++ ++ T Y + F Q+ + P++ + + W S+ E R
Sbjct: 74 HWTCASNGTTYLRFTF----SGQVVSFDPDRKLDTGIVRAAWFSIDEIR 118
>pdb|2QKM|B Chain B, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|D Chain D, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|F Chain F, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|H Chain H, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
Length = 266
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 65 VLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGV 103
VLV + G FPKG + DES + A+RE EE G
Sbjct: 112 VLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGF 150
>pdb|2A6T|A Chain A, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
pdb|2A6T|B Chain B, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
Length = 271
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 65 VLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGV 103
VLV + G FPKG + DES + A+RE EE G
Sbjct: 117 VLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGF 155
>pdb|3GRN|A Chain A, Crystal Structure Of Mutt Protein From Methanosarcina
Mazei Go1
pdb|3GRN|B Chain B, Crystal Structure Of Mutt Protein From Methanosarcina
Mazei Go1
Length = 153
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 79 PKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK 118
P G DES++E RE EE G+T +V ++ G+ NF+
Sbjct: 41 PGGKVNPDESLKEGVAREVWEETGIT-MVPGDIAGQVNFE 79
>pdb|2ZON|G Chain G, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
Length = 87
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEA 101
+ L+ + KGKG + P+GG DE+ AA+ ++ A
Sbjct: 49 DALLATVLKGKGAMPPRGGTAADEATLRAAVAYMMDAA 86
>pdb|3H95|A Chain A, Crystal Structure Of The Nudix Domain Of Nudt6
Length = 199
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 58 INEEDLEVLVISSQ-KGKGM-LFPKGGWEIDESIQEAALRETIEEAGV 103
+E ++LV+ + K K M FP G E +E I + A+RE EE G+
Sbjct: 34 FDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGI 81
>pdb|3DKU|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|I Chain I, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|J Chain J, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|K Chain K, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|L Chain L, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
Length = 153
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 79 PKGGWEIDESIQEAALRETIEEAGVTG 105
P G E DE++ EAA RE EE G++
Sbjct: 34 PAGHLEADETLVEAAARELWEETGISA 60
>pdb|3CNG|A Chain A, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|B Chain B, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|C Chain C, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|D Chain D, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
Length = 189
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 19/76 (25%)
Query: 30 HLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLV----ISSQKGKGMLFPKGGWEI 85
H YQ + +VGCIP E + +VL+ I+ +GK L P G E
Sbjct: 32 HTIHYQNPK-VIVGCIP-------------EWENKVLLCKRAIAPYRGKWTL-PAGFXEN 76
Query: 86 DESIQEAALRETIEEA 101
+E++ + A RET+EEA
Sbjct: 77 NETLVQGAARETLEEA 92
>pdb|1DT4|A Chain A, Crystal Structure Of Nova-1 Kh3 K-Homology Rna-Binding
Domain
Length = 73
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 10 IVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGC 44
+V + PEN+VG ++ + G+ L YQ ++ GC
Sbjct: 4 VVEIAVPENLVGAILGKGGKTLVEYQ----ELTGC 34
>pdb|2KDV|A Chain A, Solution Structure Of Rna Pyrophosphohydrolase Rpph From
Escherichia Coli
Length = 164
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 78 FPKGGWEIDESIQEAALRETIEEAGVT 104
FP+GG ES ++A RE EE G++
Sbjct: 35 FPQGGINPGESAEQAMYRELFEEVGLS 61
>pdb|3O8S|A Chain A, Crystal Structure Of An Adp-Ribose Pyrophosphatase
(Ssu98_1448) From Streptococcus Suis 89-1591 At 2.27 A
Resolution
Length = 206
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 58 INEEDLEVLVISSQKGKGMLFPKGGW-EIDESIQEAALRETIEEAGV 103
I +ED +LV Q+ G+ GGW ++D+S+++ ++E EEAG+
Sbjct: 77 IFQEDKILLV---QENDGLWSLPGGWCDVDQSVKDNVVKEVKEEAGL 120
>pdb|1F3Y|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius L.
pdb|1JKN|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius
Complexed With Atp
Length = 165
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 15/75 (20%)
Query: 79 PKGGWEIDESIQEAALRETIEEAGVTG---IVECELLGEWNFKSRAH-------NTDYQG 128
P+GG + E + AA+RE EE GVT I E ++F + +D++G
Sbjct: 43 PQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFPPKVREKLNIQWGSDWKG 102
Query: 129 -----YMFPLLVQDQ 138
++F QDQ
Sbjct: 103 QAQKWFLFKFTGQDQ 117
>pdb|3BM4|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
pdb|3BM4|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
Length = 210
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 78 FPKGGWEIDESIQEAALRETIEEAGVTG-IVEC 109
FP G + E+ + AALRE EE G G I EC
Sbjct: 94 FPAGLIDDGETPEAAALRELEEETGYKGDIAEC 126
>pdb|2DSC|A Chain A, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSC|B Chain B, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSD|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
pdb|2DSD|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
Length = 212
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 78 FPKGGWEIDESIQEAALRETIEEAGVTG-IVEC 109
FP G + E+ + AALRE EE G G I EC
Sbjct: 96 FPAGLIDDGETPEAAALRELEEETGYKGDIAEC 128
>pdb|3AC9|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3AC9|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3L85|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
pdb|3L85|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
Length = 195
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 73 GKGMLFPKGGWEIDESIQEAALRETIEEAGVTG-IVEC 109
G + FP G + E+ + AALRE EE G G I EC
Sbjct: 76 GYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAEC 113
>pdb|2DSB|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|C Chain C, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|D Chain D, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
Length = 227
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 78 FPKGGWEIDESIQEAALRETIEEAGVTG-IVEC 109
FP G + E+ + AALRE EE G G I EC
Sbjct: 94 FPAGLIDDGETPEAAALRELEEETGYKGDIAEC 126
>pdb|3ACA|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
pdb|3ACA|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
Length = 196
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 78 FPKGGWEIDESIQEAALRETIEEAGVTG-IVEC 109
FP G + E+ + AALRE EE G G I EC
Sbjct: 82 FPAGLIDDGETPEAAALRELEEETGYKGDIAEC 114
>pdb|3F6A|A Chain A, Crystal Structure Of A Hydrolase, Nudix Family From
Clostridium Perfringens
pdb|3F6A|B Chain B, Crystal Structure Of A Hydrolase, Nudix Family From
Clostridium Perfringens
Length = 159
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVT 104
+VL+ +K K L G E++E +EA +RE EEAG+
Sbjct: 18 KVLLHLHKKAKKXLPLGGHIEVNELPEEACIREAKEEAGLN 58
>pdb|1DTJ|A Chain A, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
Domain
pdb|1DTJ|B Chain B, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
Domain
pdb|1DTJ|C Chain C, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
Domain
pdb|1DTJ|D Chain D, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
Domain
Length = 76
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 10 IVSLVTPENVVGNLVSRTGRHLQRYQK 36
+V + PEN+VG ++ + G+ L YQ+
Sbjct: 4 LVEMAVPENLVGAILGKGGKTLVEYQE 30
>pdb|3HHJ|A Chain A, Crystal Structure Of Mutator Mutt From Bartonella Henselae
pdb|3HHJ|B Chain B, Crystal Structure Of Mutator Mutt From Bartonella Henselae
Length = 158
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 60 EEDLEVLVISSQKGKGML----FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW 115
++D VL+ +GK + FP G E E+ + + +RE EE GV V+ + L
Sbjct: 38 DQDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVH--VQADNLFPL 95
Query: 116 NFKSRAHNT 124
F S + T
Sbjct: 96 TFASHGYET 104
>pdb|1EC6|A Chain A, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
Domain Bound To 20-Mer Rna Hairpin
pdb|1EC6|B Chain B, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
Domain Bound To 20-Mer Rna Hairpin
Length = 87
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 10 IVSLVTPENVVGNLVSRTGRHLQRYQ 35
+V + PEN+VG ++ + G+ L YQ
Sbjct: 4 LVEIAVPENLVGAILGKGGKTLVEYQ 29
>pdb|3SON|A Chain A, Crystal Structure Of A Hypothetical Nudix Hydrolase
(Lmof2365_2679) From Listeria Monocytogenes (Atcc 19115)
At 1.70 A Resolution
pdb|3SON|B Chain B, Crystal Structure Of A Hypothetical Nudix Hydrolase
(Lmof2365_2679) From Listeria Monocytogenes (Atcc 19115)
At 1.70 A Resolution
Length = 149
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 78 FPKGGWEIDESIQEAALRETIEEAGV 103
F GG E +E+I E A RE+IEE +
Sbjct: 35 FVAGGGEDEEAISETAKRESIEELNL 60
>pdb|3RBG|A Chain A, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
pdb|3RBG|B Chain B, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
pdb|3RBG|C Chain C, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
pdb|3RBG|D Chain D, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
Length = 124
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 22/31 (70%)
Query: 49 YKCVKQSLDINEEDLEVLVISSQKGKGMLFP 79
YKC+ S ++ ++++V+V+++ KG+ +P
Sbjct: 81 YKCLHYSDSVSTKEVKVIVLATMKGEFCRYP 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,545,488
Number of Sequences: 62578
Number of extensions: 210388
Number of successful extensions: 529
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 497
Number of HSP's gapped (non-prelim): 53
length of query: 196
length of database: 14,973,337
effective HSP length: 94
effective length of query: 102
effective length of database: 9,091,005
effective search space: 927282510
effective search space used: 927282510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)