Query 029277
Match_columns 196
No_of_seqs 187 out of 1744
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 10:19:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029277.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029277hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03673 Ap6A_hydrolase Diadeno 99.9 9.4E-24 2E-28 156.1 15.1 127 39-175 1-130 (131)
2 cd04666 Nudix_Hydrolase_9 Memb 99.9 3.8E-23 8.3E-28 152.6 14.5 118 40-167 1-121 (122)
3 KOG2839 Diadenosine and diphos 99.9 5.3E-23 1.1E-27 152.4 11.6 139 32-179 1-143 (145)
4 cd03428 Ap4A_hydrolase_human_l 99.9 4.8E-22 1E-26 147.2 13.7 125 39-174 2-128 (130)
5 PRK09438 nudB dihydroneopterin 99.9 7.1E-22 1.5E-26 150.0 13.2 129 38-179 6-147 (148)
6 cd04684 Nudix_Hydrolase_25 Con 99.9 1.9E-21 4.1E-26 143.1 14.5 117 41-171 2-127 (128)
7 cd04679 Nudix_Hydrolase_20 Mem 99.9 1.5E-21 3.2E-26 143.9 13.2 113 38-163 1-117 (125)
8 cd03674 Nudix_Hydrolase_1 Memb 99.9 6E-21 1.3E-25 143.5 14.7 125 39-175 2-137 (138)
9 cd04695 Nudix_Hydrolase_36 Mem 99.9 5.5E-21 1.2E-25 142.3 14.1 124 42-176 2-129 (131)
10 cd03675 Nudix_Hydrolase_2 Cont 99.9 8.2E-21 1.8E-25 141.5 15.0 109 64-173 12-126 (134)
11 cd03430 GDPMH GDP-mannose glyc 99.9 1.3E-20 2.8E-25 142.9 14.7 118 37-167 10-139 (144)
12 PRK15434 GDP-mannose mannosyl 99.9 1.2E-20 2.5E-25 145.4 14.4 122 37-171 15-148 (159)
13 PF00293 NUDIX: NUDIX domain; 99.9 1.6E-20 3.5E-25 138.6 14.4 125 38-175 1-133 (134)
14 cd03427 MTH1 MutT homolog-1 (M 99.9 1.6E-20 3.5E-25 140.3 13.2 111 64-176 13-126 (137)
15 cd04664 Nudix_Hydrolase_7 Memb 99.9 1.5E-20 3.2E-25 139.3 12.6 120 41-171 3-128 (129)
16 cd04673 Nudix_Hydrolase_15 Mem 99.8 2.6E-20 5.6E-25 136.1 13.0 112 41-167 2-120 (122)
17 PLN02325 nudix hydrolase 99.8 2E-20 4.4E-25 141.9 12.7 122 36-172 6-135 (144)
18 cd04672 Nudix_Hydrolase_14 Mem 99.8 2.3E-20 4.9E-25 137.4 12.6 116 38-168 1-119 (123)
19 cd04680 Nudix_Hydrolase_21 Mem 99.8 1.6E-20 3.5E-25 137.0 11.7 115 41-171 2-117 (120)
20 cd03672 Dcp2p mRNA decapping e 99.8 4E-20 8.7E-25 140.4 14.0 110 40-164 2-114 (145)
21 cd04678 Nudix_Hydrolase_19 Mem 99.8 3.6E-20 7.7E-25 137.2 13.3 111 38-161 1-117 (129)
22 cd04688 Nudix_Hydrolase_29 Mem 99.8 5.3E-20 1.1E-24 135.8 13.4 112 40-165 2-122 (126)
23 cd04696 Nudix_Hydrolase_37 Mem 99.8 7.2E-20 1.6E-24 135.0 14.0 119 39-171 2-124 (125)
24 cd04687 Nudix_Hydrolase_28 Mem 99.8 5.2E-20 1.1E-24 136.3 13.2 113 39-165 1-125 (128)
25 cd04676 Nudix_Hydrolase_17 Mem 99.8 5E-20 1.1E-24 135.3 13.0 121 39-172 2-128 (129)
26 cd04689 Nudix_Hydrolase_30 Mem 99.8 7.5E-20 1.6E-24 134.8 14.0 107 39-159 1-112 (125)
27 cd04700 DR1025_like DR1025 fro 99.8 6.4E-20 1.4E-24 138.7 13.5 118 37-168 11-132 (142)
28 cd04670 Nudix_Hydrolase_12 Mem 99.8 1E-19 2.2E-24 134.5 13.5 113 39-166 2-118 (127)
29 cd04681 Nudix_Hydrolase_22 Mem 99.8 6.3E-20 1.4E-24 135.9 12.3 121 41-174 3-129 (130)
30 COG1051 ADP-ribose pyrophospha 99.8 7.2E-20 1.6E-24 139.0 12.3 113 37-163 8-124 (145)
31 cd03671 Ap4A_hydrolase_plant_l 99.8 3E-19 6.5E-24 135.6 14.8 123 38-174 2-143 (147)
32 cd04677 Nudix_Hydrolase_18 Mem 99.8 1.8E-19 3.9E-24 133.6 12.6 114 38-164 6-125 (132)
33 cd04669 Nudix_Hydrolase_11 Mem 99.8 2.1E-19 4.7E-24 132.1 12.4 106 41-165 2-118 (121)
34 PRK15472 nucleoside triphospha 99.8 3.5E-19 7.6E-24 134.1 13.8 108 64-173 16-137 (141)
35 cd04667 Nudix_Hydrolase_10 Mem 99.8 2.6E-19 5.5E-24 129.7 11.7 99 64-170 12-110 (112)
36 cd04511 Nudix_Hydrolase_4 Memb 99.8 3.3E-19 7.2E-24 132.5 12.3 113 36-167 10-126 (130)
37 cd04690 Nudix_Hydrolase_31 Mem 99.8 2.9E-19 6.4E-24 130.1 10.6 99 64-165 13-114 (118)
38 cd04671 Nudix_Hydrolase_13 Mem 99.8 3.9E-19 8.4E-24 131.3 10.5 104 41-162 2-111 (123)
39 cd04686 Nudix_Hydrolase_27 Mem 99.8 1E-18 2.2E-23 130.3 12.9 107 41-161 2-119 (131)
40 cd04683 Nudix_Hydrolase_24 Mem 99.8 6.7E-19 1.5E-23 128.6 11.6 98 64-163 12-116 (120)
41 cd04682 Nudix_Hydrolase_23 Mem 99.8 5.8E-19 1.3E-23 129.7 10.9 96 64-162 13-115 (122)
42 cd04691 Nudix_Hydrolase_32 Mem 99.8 7.5E-19 1.6E-23 128.5 11.4 94 64-163 12-110 (117)
43 cd03429 NADH_pyrophosphatase N 99.8 1.1E-18 2.4E-23 130.2 12.2 110 63-177 12-127 (131)
44 PRK10546 pyrimidine (deoxy)nuc 99.8 3.4E-18 7.5E-23 127.3 14.0 112 64-180 16-131 (135)
45 cd03424 ADPRase_NUDT5 ADP-ribo 99.8 2.3E-18 4.9E-23 128.7 12.4 112 40-166 3-120 (137)
46 PRK00714 RNA pyrophosphohydrol 99.8 4.7E-18 1E-22 130.5 14.1 128 37-178 6-151 (156)
47 cd04661 MRP_L46 Mitochondrial 99.8 2.7E-18 5.8E-23 128.2 12.1 104 61-165 11-124 (132)
48 cd04693 Nudix_Hydrolase_34 Mem 99.8 3.9E-18 8.4E-23 126.1 10.8 99 64-166 13-118 (127)
49 cd02885 IPP_Isomerase Isopente 99.8 7.2E-18 1.6E-22 130.5 12.5 125 27-165 17-152 (165)
50 cd03426 CoAse Coenzyme A pyrop 99.8 4.1E-18 8.9E-23 130.9 10.8 110 40-161 2-118 (157)
51 PRK00241 nudC NADH pyrophospha 99.8 1.6E-17 3.5E-22 137.0 14.2 98 64-166 144-243 (256)
52 cd04697 Nudix_Hydrolase_38 Mem 99.8 1E-17 2.3E-22 123.9 11.4 110 41-166 2-117 (126)
53 cd04692 Nudix_Hydrolase_33 Mem 99.8 1.7E-17 3.7E-22 125.4 12.0 116 39-163 2-129 (144)
54 cd04699 Nudix_Hydrolase_39 Mem 99.7 3.4E-17 7.3E-22 120.5 12.4 110 40-163 2-116 (129)
55 PRK05379 bifunctional nicotina 99.7 3.2E-17 7E-22 140.4 14.1 123 39-175 203-338 (340)
56 PRK10776 nucleoside triphospha 99.7 6.6E-17 1.4E-21 118.9 13.7 107 64-175 17-127 (129)
57 PRK15393 NUDIX hydrolase YfcD; 99.7 4.8E-17 1E-21 127.7 13.6 115 63-181 49-171 (180)
58 cd02883 Nudix_Hydrolase Nudix 99.7 4.8E-17 1E-21 117.4 10.7 112 41-165 2-116 (123)
59 PRK03759 isopentenyl-diphospha 99.7 7.9E-17 1.7E-21 126.8 12.4 116 37-165 32-156 (184)
60 cd04662 Nudix_Hydrolase_5 Memb 99.7 1E-16 2.3E-21 118.4 11.6 57 41-106 2-65 (126)
61 cd03425 MutT_pyrophosphohydrol 99.7 3E-16 6.5E-21 114.1 13.7 106 63-173 13-122 (124)
62 TIGR00586 mutt mutator mutT pr 99.7 3.4E-16 7.4E-21 115.2 13.6 105 64-173 17-125 (128)
63 TIGR02150 IPP_isom_1 isopenten 99.7 2E-16 4.4E-21 121.6 12.3 114 37-165 25-146 (158)
64 cd04685 Nudix_Hydrolase_26 Mem 99.7 2E-16 4.4E-21 118.4 11.9 108 41-161 2-123 (133)
65 cd04665 Nudix_Hydrolase_8 Memb 99.7 1.8E-16 3.9E-21 116.3 11.0 91 64-158 12-102 (118)
66 cd04694 Nudix_Hydrolase_35 Mem 99.7 3E-16 6.5E-21 118.9 12.2 101 64-165 14-135 (143)
67 PRK11762 nudE adenosine nucleo 99.7 4.3E-16 9.3E-21 122.8 12.9 103 64-169 60-167 (185)
68 TIGR00052 nudix-type nucleosid 99.7 4.9E-16 1.1E-20 122.5 10.9 118 39-170 44-174 (185)
69 PRK10729 nudF ADP-ribose pyrop 99.7 1.6E-15 3.6E-20 121.0 13.6 117 39-169 49-179 (202)
70 TIGR02705 nudix_YtkD nucleosid 99.7 4.7E-15 1E-19 113.6 15.1 95 64-165 36-131 (156)
71 cd03670 ADPRase_NUDT9 ADP-ribo 99.7 3.2E-15 6.9E-20 117.5 13.5 112 62-176 48-184 (186)
72 cd04663 Nudix_Hydrolase_6 Memb 99.6 1.4E-15 3.1E-20 112.5 10.2 99 62-163 13-118 (126)
73 PRK10707 putative NUDIX hydrol 99.6 3.5E-15 7.7E-20 118.0 13.0 114 37-163 28-148 (190)
74 cd03676 Nudix_hydrolase_3 Memb 99.6 7.2E-15 1.6E-19 115.2 13.2 123 37-167 30-164 (180)
75 PRK15009 GDP-mannose pyrophosp 99.6 2.2E-14 4.7E-19 113.6 13.5 117 39-170 45-175 (191)
76 PRK08999 hypothetical protein; 99.6 2.4E-14 5.2E-19 121.2 14.0 106 64-174 18-127 (312)
77 cd04674 Nudix_Hydrolase_16 Mem 99.6 2.2E-14 4.7E-19 105.2 11.0 104 38-157 3-111 (118)
78 PLN03143 nudix hydrolase; Prov 99.5 9.6E-13 2.1E-17 110.0 14.8 123 62-184 142-288 (291)
79 PLN02709 nudix hydrolase 99.5 5.2E-13 1.1E-17 107.4 11.3 117 37-161 30-155 (222)
80 COG0494 MutT NTP pyrophosphohy 99.5 1.4E-12 3E-17 96.2 12.2 102 63-165 24-138 (161)
81 COG2816 NPY1 NTP pyrophosphohy 99.4 1.2E-13 2.5E-18 113.7 5.4 95 64-163 156-252 (279)
82 PLN02552 isopentenyl-diphospha 99.4 8.6E-12 1.9E-16 102.2 14.6 132 37-185 54-230 (247)
83 PLN02791 Nudix hydrolase homol 99.3 5.7E-11 1.2E-15 110.3 14.7 115 37-163 30-160 (770)
84 COG4119 Predicted NTP pyrophos 99.3 3.4E-11 7.4E-16 87.6 10.4 127 38-179 2-152 (161)
85 KOG3084 NADH pyrophosphatase I 99.2 4.1E-12 9E-17 105.3 0.1 97 63-163 200-300 (345)
86 KOG3041 Nucleoside diphosphate 99.1 3.4E-09 7.4E-14 82.7 12.4 101 61-163 86-196 (225)
87 cd03431 DNA_Glycosylase_C DNA 99.1 7.4E-09 1.6E-13 74.6 12.9 98 64-172 15-116 (118)
88 KOG0648 Predicted NUDIX hydrol 99.0 4.5E-10 9.8E-15 93.1 4.4 113 37-162 113-232 (295)
89 KOG3069 Peroxisomal NUDIX hydr 98.9 9.9E-09 2.1E-13 82.2 9.0 114 39-161 42-163 (246)
90 PLN02839 nudix hydrolase 98.6 2.6E-07 5.7E-12 79.2 9.3 103 61-164 216-330 (372)
91 KOG4195 Transient receptor pot 98.5 1.6E-06 3.4E-11 69.0 10.2 138 37-176 110-269 (275)
92 PF14815 NUDIX_4: NUDIX domain 98.4 4.7E-06 1E-10 60.2 10.2 101 63-171 9-113 (114)
93 COG1443 Idi Isopentenyldiphosp 98.3 2.7E-06 5.8E-11 65.5 7.1 115 38-165 32-157 (185)
94 KOG2937 Decapping enzyme compl 97.7 4.7E-06 1E-10 70.0 -0.8 106 38-158 81-189 (348)
95 COG4112 Predicted phosphoester 97.7 0.00037 8E-09 53.2 8.6 97 64-161 73-187 (203)
96 PF13869 NUDIX_2: Nucleotide h 97.4 0.00091 2E-08 52.5 8.0 115 32-160 35-169 (188)
97 KOG1689 mRNA cleavage factor I 96.7 0.0017 3.7E-08 49.9 3.6 55 37-102 68-122 (221)
98 KOG4548 Mitochondrial ribosoma 96.2 0.045 9.8E-07 44.8 8.8 102 62-165 138-251 (263)
99 KOG4432 Uncharacterized NUDIX 96.1 0.018 3.9E-07 48.3 6.4 80 76-156 81-160 (405)
100 KOG0142 Isopentenyl pyrophosph 95.5 0.052 1.1E-06 43.1 6.4 79 87-165 103-187 (225)
101 PRK10880 adenine DNA glycosyla 95.3 0.25 5.4E-06 42.8 10.5 96 64-172 243-342 (350)
102 KOG4432 Uncharacterized NUDIX 94.5 0.087 1.9E-06 44.3 5.4 90 76-167 286-382 (405)
103 KOG4313 Thiamine pyrophosphoki 93.4 0.24 5.1E-06 40.7 5.8 100 63-162 148-259 (306)
104 PRK13910 DNA glycosylase MutY; 89.7 5.2 0.00011 33.8 10.3 26 149-174 256-281 (289)
105 PF14443 DBC1: DBC1 84.3 6 0.00013 29.2 6.7 45 63-107 8-60 (126)
106 PF07026 DUF1317: Protein of u 74.3 6.8 0.00015 24.8 3.7 31 66-99 14-44 (60)
107 PF03487 IL13: Interleukin-13; 65.4 5.9 0.00013 23.1 1.9 23 79-101 14-36 (43)
108 COG4111 Uncharacterized conser 45.6 1.1E+02 0.0025 25.5 6.9 94 61-159 35-133 (322)
109 TIGR01084 mutY A/G-specific ad 42.0 73 0.0016 26.7 5.6 18 64-81 240-261 (275)
110 KOG0648 Predicted NUDIX hydrol 40.7 13 0.00028 31.4 0.9 35 74-109 55-89 (295)
111 PF09505 Dimeth_Pyl: Dimethyla 34.3 23 0.0005 30.6 1.4 26 80-105 406-431 (466)
112 COG1194 MutY A/G-specific DNA 33.6 84 0.0018 27.3 4.7 22 64-85 248-273 (342)
113 KOG2937 Decapping enzyme compl 27.6 17 0.00036 31.3 -0.5 34 74-107 264-297 (348)
114 PF13014 KH_3: KH domain 26.8 61 0.0013 18.5 2.0 17 93-109 12-28 (43)
115 PHA02754 hypothetical protein; 22.4 1E+02 0.0022 19.6 2.4 29 154-182 3-31 (67)
No 1
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.92 E-value=9.4e-24 Score=156.08 Aligned_cols=127 Identities=24% Similarity=0.290 Sum_probs=100.6
Q ss_pred eEEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEee
Q 029277 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK 118 (196)
Q Consensus 39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~ 118 (196)
+.+|++|+++.+ + ++.+|||+++++.+.|.||||+++.||++++||.||++||||+.+..... ++.+.+.
T Consensus 1 ~~~a~~ii~~~~---~------~~~~vLl~~~~~~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~ 70 (131)
T cd03673 1 VLAAGGVVFRGS---D------GGIEVLLIHRPRGDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDP-LGTIRYW 70 (131)
T ss_pred CeeEEEEEEEcc---C------CCeEEEEEEcCCCCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecce-EEEEEEe
Confidence 468899999975 2 45699999998878999999999999999999999999999999988776 7766655
Q ss_pred eCCC--CceEEEEEEEEeeccccccC-CcCccceeEEEeHHHHHhhccchhHHHHHHHHH
Q 029277 119 SRAH--NTDYQGYMFPLLVQDQLAEW-PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLV 175 (196)
Q Consensus 119 ~~~~--~~~~~~~~f~~~~~~~~~~~-~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 175 (196)
.+.. ......++|.+......... ++.|+.+++|++++++.+++.++..+.++..++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 130 (131)
T cd03673 71 FSSSGKRVHKTVHWWLMRALGGEFTPQPDEEVDEVRWLPPDEARDRLSYPNDRELLRAAL 130 (131)
T ss_pred ccCCCCCcceEEEEEEEEEcCCCcccCCCCcEEEEEEcCHHHHHHHcCCHhHHHHHHHhh
Confidence 4431 23455666776655433322 456779999999999999999999999887664
No 2
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.91 E-value=3.8e-23 Score=152.62 Aligned_cols=118 Identities=40% Similarity=0.642 Sum_probs=94.5
Q ss_pred EEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeec-ceeeeeEEee
Q 029277 40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVE-CELLGEWNFK 118 (196)
Q Consensus 40 ~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~-~~~l~~~~~~ 118 (196)
++||+|+++.+ + +..++||+++.+.+.|.||||+++.|||+.+||+||++||||+.+... .. ++.+.+.
T Consensus 1 ~~~g~v~~~~~---~------~~~~vLLv~~~~~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~-l~~~~~~ 70 (122)
T cd04666 1 LQAGAIPYRET---G------GEVEVLLVTSRRTGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRP-LGRFEYR 70 (122)
T ss_pred CEEEEEEEEEc---C------CceEEEEEEecCCCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceE-EEEEEee
Confidence 36899999975 2 356899999887789999999999999999999999999999998776 66 8888766
Q ss_pred eCCC--CceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhH
Q 029277 119 SRAH--NTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWM 167 (196)
Q Consensus 119 ~~~~--~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~ 167 (196)
.+.. .....+++|.+.........++.+..+++|++++++.+++.++++
T Consensus 71 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~ea~~~~~~~~~ 121 (122)
T cd04666 71 KRSKNRPPRCEVAVFPLEVTEELDEWPEMHQRKRKWFSPEEAALLVEEPEL 121 (122)
T ss_pred ecCCCCCceEEEEEEEEEEeccccCCcccCceEEEEecHHHHHHhcCChhh
Confidence 5432 235566778777665444445556789999999999999988754
No 3
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=99.90 E-value=5.3e-23 Score=152.35 Aligned_cols=139 Identities=48% Similarity=0.825 Sum_probs=117.3
Q ss_pred cccCC-CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC-CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecc
Q 029277 32 QRYQK-GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEC 109 (196)
Q Consensus 32 ~~~~~-~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~-~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~ 109 (196)
|+|++ ++|.++|||+++.+ + ...+||||.+.+ +..|.+|+|++|++|+..+||.||..||+|+......
T Consensus 1 qry~~~G~r~vagCi~~r~~---~------~~ieVLlvsSs~~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~ 71 (145)
T KOG2839|consen 1 QRYDPAGFRLVAGCICYRSD---K------EKIEVLLVSSSKKPHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGR 71 (145)
T ss_pred CccCCCCcEEEEEeeeeeec---C------cceEEEEEecCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeec
Confidence 57885 99999999999986 1 246899999887 4789999999999999999999999999999999888
Q ss_pred eeeeeEEeeeCCCCceEEEEEEEEeeccccccCCcCc--cceeEEEeHHHHHhhccchhHHHHHHHHHHHHh
Q 029277 110 ELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKN--VRSRKWMSVAEARKVCQHWWMKEALDRLVMRLT 179 (196)
Q Consensus 110 ~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e--~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~ 179 (196)
...+.+++.+..+.+.+..+.|.+.+......+|+.+ ..+.+|+.++|+.+...+..++.++...++.+.
T Consensus 72 ~~~g~~~~~~~~~~~~~k~~~~~l~v~e~le~wp~~~~~~r~r~W~~ledA~~~~~~~~m~~al~e~~~~l~ 143 (145)
T KOG2839|consen 72 LLGGFEDFLSKKHRTKPKGVMYVLAVTEELEDWPESEHEFREREWLKLEDAIELCQHKWMKAALEEFLQFLC 143 (145)
T ss_pred cccchhhccChhhcccccceeehhhhhhhcccChhhhcccceeEEeeHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 5366665666555666777888888877777777766 799999999999999999999999888877664
No 4
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.89 E-value=4.8e-22 Score=147.23 Aligned_cols=125 Identities=25% Similarity=0.273 Sum_probs=94.9
Q ss_pred eEEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEE--
Q 029277 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN-- 116 (196)
Q Consensus 39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~-- 116 (196)
+.+||+|+|+.+ + ++.++||+++++ +.|.+|||++++|||+.+||.||++||||+.+..... ++.+.
T Consensus 2 ~~~~g~vi~~~~---~------~~~~vLl~~~~~-~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~ 70 (130)
T cd03428 2 ERSAGAIIYRRL---N------NEIEYLLLQASY-GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFI-VLGFKET 70 (130)
T ss_pred ceEEEEEEEEec---C------CCceEEEEEccC-CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhh-hccceeE
Confidence 357899999986 2 456899999887 8999999999999999999999999999999877665 43222
Q ss_pred eeeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHHHHH
Q 029277 117 FKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRL 174 (196)
Q Consensus 117 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~ 174 (196)
+...........++|.+...........+|..++.|++++++.+++.++.++++++.+
T Consensus 71 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~ 128 (130)
T cd03428 71 LNYQVRGKLKTVTYFLAELRPDVEVKLSEEHQDYRWLPYEEALKLLTYEDLKAVLDKA 128 (130)
T ss_pred EEccccCcceEEEEEEEEeCCCCccccccceeeEEeecHHHHHHHcCchhHHHHHHHh
Confidence 2222122345566777776633222233678999999999999999999888888765
No 5
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.88 E-value=7.1e-22 Score=149.98 Aligned_cols=129 Identities=23% Similarity=0.302 Sum_probs=92.9
Q ss_pred ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC-CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeeccee-ee--
Q 029277 38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECEL-LG-- 113 (196)
Q Consensus 38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~-~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~-l~-- 113 (196)
.+.+|++++++.+ ++|||+++.. .+.|.+|||++|.|||+.+||+||++||||+.+...... ++
T Consensus 6 ~~~~v~~vi~~~~------------~~vLl~~r~~~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~ 73 (148)
T PRK09438 6 RPVSVLVVIYTPD------------LGVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQ 73 (148)
T ss_pred CceEEEEEEEeCC------------CeEEEEEecCCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeecccc
Confidence 4678888888863 2699998865 378999999999999999999999999999998322210 11
Q ss_pred ---eEEe------eeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHHHHh
Q 029277 114 ---EWNF------KSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLT 179 (196)
Q Consensus 114 ---~~~~------~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~ 179 (196)
.+.+ .......+...++|.+........ ..+|+.++.|++++++.++...+.++++++.+..+++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~E~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~~ 147 (148)
T PRK09438 74 RSIEYEIFPHWRHRYAPGVTRNTEHWFCLALPHERPV-VLTEHLAYQWLDAREAAALTKSWSNAEAIEQLVIRLA 147 (148)
T ss_pred cccccccchhhhhccccccCCceeEEEEEecCCCCcc-ccCcccceeeCCHHHHHHHhcChhHHHHHHHHHHHhc
Confidence 1111 011111234556777765443222 2347899999999999999999999999998887764
No 6
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.88 E-value=1.9e-21 Score=143.15 Aligned_cols=117 Identities=22% Similarity=0.205 Sum_probs=89.0
Q ss_pred EEEEEEEEeeccCCcccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEe
Q 029277 41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF 117 (196)
Q Consensus 41 ~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~---~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~ 117 (196)
+|++|+++.+ +|||+++.+. +.|.+|||+++.||++.+||+||++||||+.+..... ++.+.+
T Consensus 2 ~~~~ii~~~~-------------~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~-~~~~~~ 67 (128)
T cd04684 2 GAYAVIPRDG-------------KLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRR-LGSASR 67 (128)
T ss_pred eeEEEEEeCC-------------EEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeeccee-eeEEEE
Confidence 4667777742 7999998874 8899999999999999999999999999999887776 776654
Q ss_pred eeCCCC----ceEEEEEEEEeeccccc--cCCcCccceeEEEeHHHHHhhccchhHHHHH
Q 029277 118 KSRAHN----TDYQGYMFPLLVQDQLA--EWPEKNVRSRKWMSVAEARKVCQHWWMKEAL 171 (196)
Q Consensus 118 ~~~~~~----~~~~~~~f~~~~~~~~~--~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l 171 (196)
...... .+...++|.+....... ..+.++..++.|++++++......+....++
T Consensus 68 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~~~~~~a~ 127 (128)
T cd04684 68 YFYSPDGDYDAHHLCVFYDARVVGGALPVQEPGEDSHGAAWLPLDEAIERLLSPLVLWAV 127 (128)
T ss_pred EEECCCCCeeccEEEEEEEEEEecCccccCCCCCCceeeEEECHHHhhccCCCHHHHHhh
Confidence 433221 24456677777665443 3345567899999999999888888666554
No 7
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.87 E-value=1.5e-21 Score=143.95 Aligned_cols=113 Identities=13% Similarity=0.117 Sum_probs=86.5
Q ss_pred ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeee
Q 029277 38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE 114 (196)
Q Consensus 38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~---~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~ 114 (196)
+|++|++++++.+ ++|||+++.+ .+.|.+|||++++||++.+||+||++||||+.+..... ++.
T Consensus 1 ~~~~~~~~i~~~~------------~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~-~~~ 67 (125)
T cd04679 1 PRVGCGAAILRDD------------GKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRL-LCV 67 (125)
T ss_pred CceEEEEEEECCC------------CEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceE-EEE
Confidence 5789999999863 2799999864 37899999999999999999999999999999887776 666
Q ss_pred EEeeeCCCCceEEEEEEEEeeccccccC-CcCccceeEEEeHHHHHhhcc
Q 029277 115 WNFKSRAHNTDYQGYMFPLLVQDQLAEW-PEKNVRSRKWMSVAEARKVCQ 163 (196)
Q Consensus 115 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~e~~~~~W~~~~el~~~~~ 163 (196)
+.+.......+...++|.+......... ..+|..+++|++++++.+.+.
T Consensus 68 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~~l~~~l~ 117 (125)
T cd04679 68 VDHIIEEPPQHWVAPVYLAENFSGEPRLMEPDKLLELGWFALDALPQPLT 117 (125)
T ss_pred EeecccCCCCeEEEEEEEEeecCCccccCCCccccEEEEeCHHHCCchhH
Confidence 5544433344556667777665433322 235779999999999987655
No 8
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.87 E-value=6e-21 Score=143.46 Aligned_cols=125 Identities=18% Similarity=0.144 Sum_probs=89.0
Q ss_pred eEEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeee-----
Q 029277 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG----- 113 (196)
Q Consensus 39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~----- 113 (196)
+..|++++++.+ .++|||+++++.+.|.+|||++++||++++||.||++||||+.+..... .+
T Consensus 2 ~~~~~~~v~~~~-----------~~~vLLv~r~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~-~~~~~~~ 69 (138)
T cd03674 2 HFTASAFVVNPD-----------RGKVLLTHHRKLGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRP-LSVLVDL 69 (138)
T ss_pred cEEEEEEEEeCC-----------CCeEEEEEEcCCCcEECCceecCCCCCHHHHHHHHHHHHHCCCccccee-ccccccc
Confidence 467888888852 2489999988888999999999999999999999999999998654433 22
Q ss_pred -eEEee-eCCC---CceEEEEEEEEeecccccc-CCcCccceeEEEeHHHHHhhccchhHHHHHHHHH
Q 029277 114 -EWNFK-SRAH---NTDYQGYMFPLLVQDQLAE-WPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLV 175 (196)
Q Consensus 114 -~~~~~-~~~~---~~~~~~~~f~~~~~~~~~~-~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 175 (196)
.+... .... ...+...+|.+........ .+.+|..+++|++++++..+...+.++.++..++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~i~~~~ 137 (138)
T cd03674 70 DVHPIDGHPKRGVPGHLHLDLRFLAVAPADDVAPPKSDESDAVRWFPLDELASLELPEDVRRLVEKAL 137 (138)
T ss_pred eeEeecCCCCCCCCCcEEEEEEEEEEccCccccCCCCCcccccEEEcHHHhhhccCCHHHHHHHHHHh
Confidence 11111 1111 1223344676665443322 2456778999999999988777788888887654
No 9
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.87 E-value=5.5e-21 Score=142.34 Aligned_cols=124 Identities=22% Similarity=0.195 Sum_probs=90.2
Q ss_pred EEEEEEEeeccCCcccccCCceEEEEEEEcC--CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeE--Ee
Q 029277 42 VGCIPYRYKCVKQSLDINEEDLEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW--NF 117 (196)
Q Consensus 42 vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~--~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~--~~ 117 (196)
+|+|++... + ++.++||++|.. .|.|.+|||++++|||+.+||+||++||||+++..... ...+ .+
T Consensus 2 ~~~v~~~~~---~------~~~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~ 71 (131)
T cd04695 2 VSGVLLRSL---D------KETKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYN-ADYLEQFY 71 (131)
T ss_pred ceEEEEEEc---C------CCCEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCcccccc-ccceeeEe
Confidence 577777765 2 345899999987 68999999999999999999999999999999764322 1111 12
Q ss_pred eeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHH
Q 029277 118 KSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVM 176 (196)
Q Consensus 118 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~ 176 (196)
.. .....+...+|.+.........+++|+.+++|++++++.++...+..+.++..+..
T Consensus 72 ~~-~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~ 129 (131)
T cd04695 72 EA-NDNRILMAPVFVGFVPPHQEVVLNHEHTEYRWCSFAEALELAPFPGQRALYDHVWR 129 (131)
T ss_pred ec-CCceEEEEEEEEEEecCCCccccCchhcccEecCHHHHHHhcCChhHHHHHHHHHh
Confidence 21 22223444566665543323334467899999999999999999999998887654
No 10
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.87 E-value=8.2e-21 Score=141.49 Aligned_cols=109 Identities=21% Similarity=0.345 Sum_probs=80.7
Q ss_pred EEEEEEEcCC--CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeecccccc
Q 029277 64 EVLVISSQKG--KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAE 141 (196)
Q Consensus 64 ~vLLv~~~~~--~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 141 (196)
++||+++.+. +.|.+|||++++||++.+||.||++||||+.+..... ++.+.+..+.....+..++|.+........
T Consensus 12 ~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 90 (134)
T cd03675 12 RFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTAL-LGIYQWTAPDSDTTYLRFAFAAELLEHLPD 90 (134)
T ss_pred EEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceE-EEEEEeecCCCCeeEEEEEEEEEECCCCCC
Confidence 7999998754 5799999999999999999999999999999887766 666665544323344556677766543322
Q ss_pred -CCcCccceeEEEeHHHHHhhc---cchhHHHHHHH
Q 029277 142 -WPEKNVRSRKWMSVAEARKVC---QHWWMKEALDR 173 (196)
Q Consensus 142 -~~~~e~~~~~W~~~~el~~~~---~~~~~~~~l~~ 173 (196)
..++++.++.|++++++..+. ..+..++.+..
T Consensus 91 ~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~~i~~ 126 (134)
T cd03675 91 QPLDSGIVRAHWLTLEEILALAARLRSPLVLRCIED 126 (134)
T ss_pred CCCCCCceeeEEEeHHHHHhhhhhhcCchHHHHHHH
Confidence 234577899999999999886 34444444443
No 11
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.86 E-value=1.3e-20 Score=142.88 Aligned_cols=118 Identities=16% Similarity=0.120 Sum_probs=86.4
Q ss_pred CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeec--cee
Q 029277 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVE--CEL 111 (196)
Q Consensus 37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~---~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~--~~~ 111 (196)
.++++|+++|++.+ ++|||++|.+ .|.|.||||+++.|||+.+||+||++||||+.+... ..
T Consensus 10 ~p~v~v~~vI~~~~------------g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~- 76 (144)
T cd03430 10 TPLVSIDLIVENED------------GQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAEL- 76 (144)
T ss_pred CCeEEEEEEEEeCC------------CeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceE-
Confidence 35788899998853 2899999864 478999999999999999999999999999998766 55
Q ss_pred eeeEEeeeCC------CCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhh-ccchhH
Q 029277 112 LGEWNFKSRA------HNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKV-CQHWWM 167 (196)
Q Consensus 112 l~~~~~~~~~------~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~-~~~~~~ 167 (196)
++.+.+.... ...++...+|.+.........+..|..+++|++++++.+. ...+..
T Consensus 77 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~ 139 (144)
T cd03430 77 LGVFEHFYDDNFFGDDFSTHYVVLGYVLKLSSNELLLPDEQHSEYQWLTSDELLADDDVHPNT 139 (144)
T ss_pred EEEEEEEeccccccCCCccEEEEEEEEEEEcCCcccCCchhccEeEEecHHHHhcCCCcCHHH
Confidence 6665433221 1224455667666654433345567899999999999875 333433
No 12
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.86 E-value=1.2e-20 Score=145.37 Aligned_cols=122 Identities=18% Similarity=0.165 Sum_probs=86.7
Q ss_pred CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHhhceeeee--ccee
Q 029277 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIV--ECEL 111 (196)
Q Consensus 37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~---~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~--~~~~ 111 (196)
.+..+|++++++.. ++|||++|... |.|.||||+++.|||+++||+||++||||+.+.. ...
T Consensus 15 ~~~~~v~~vI~~~~------------g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~- 81 (159)
T PRK15434 15 TPLISLDFIVENSR------------GEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQF- 81 (159)
T ss_pred CceEEEEEEEECCC------------CEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceE-
Confidence 45677888887642 38999998642 7899999999999999999999999999999753 233
Q ss_pred eeeEEeeeCC---C---CceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhh-ccchhHHHHH
Q 029277 112 LGEWNFKSRA---H---NTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKV-CQHWWMKEAL 171 (196)
Q Consensus 112 l~~~~~~~~~---~---~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~-~~~~~~~~~l 171 (196)
++.+.+.... . ..++..++|.+....+.....+.|+.+++|++++++... ...+.++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~g~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~ 148 (159)
T PRK15434 82 YGVWQHFYDDNFSGTDFTTHYVVLGFRLRVAEEDLLLPDEQHDDYRWLTPDALLASDNVHANSRAYF 148 (159)
T ss_pred EEEEEeecccccCCCccceEEEEEEEEEEecCCcccCChHHeeEEEEEeHHHhhhccccCHHHHHHh
Confidence 5554433221 1 224566677777665443334457899999999999876 3444444444
No 13
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.86 E-value=1.6e-20 Score=138.61 Aligned_cols=125 Identities=23% Similarity=0.280 Sum_probs=95.7
Q ss_pred ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceee
Q 029277 38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELL 112 (196)
Q Consensus 38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l 112 (196)
+|.+|++++++.+ + +|||+++.+. +.|.+|||+++.||++.+||+||+.||||+.+..... +
T Consensus 1 ~~~~v~~ii~~~~----------~--~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~-~ 67 (134)
T PF00293_consen 1 WRRAVGVIIFNED----------G--KVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLEL-L 67 (134)
T ss_dssp EEEEEEEEEEETT----------T--EEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEE-E
T ss_pred CCCEEEEEEEeCC----------c--EEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceeccccc-c
Confidence 4789999999974 2 8999999876 5799999999999999999999999999999966665 5
Q ss_pred eeEEeeeCCCCc-eEEEEEEEEeecccc--ccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHH
Q 029277 113 GEWNFKSRAHNT-DYQGYMFPLLVQDQL--AEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLV 175 (196)
Q Consensus 113 ~~~~~~~~~~~~-~~~~~~f~~~~~~~~--~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 175 (196)
+...+....... ....++|.+...... ......|..+++|++++++.++...+....+++.+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~i~~~~ 133 (134)
T PF00293_consen 68 GLFSYPSPSGDPEGEIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDELLELLLNGRIRKIIPWLY 133 (134)
T ss_dssp EEEEEEETTTESSEEEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHHHHHHHTTHHHHHHHHHH
T ss_pred eeeeecccCCCcccEEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHhhhchhCcchhhhhcccc
Confidence 655555554332 345556655554432 222334889999999999999998887777766543
No 14
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.85 E-value=1.6e-20 Score=140.31 Aligned_cols=111 Identities=22% Similarity=0.180 Sum_probs=86.4
Q ss_pred EEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeeccccc
Q 029277 64 EVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLA 140 (196)
Q Consensus 64 ~vLLv~~~~---~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 140 (196)
++||+++.+ .+.|.+|||+++.||++.+||+||++||||+.+..... ++.+.+...........++|.+.......
T Consensus 13 ~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 91 (137)
T cd03427 13 KVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKL-VGIIKFPFPGEEERYGVFVFLATEFEGEP 91 (137)
T ss_pred EEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceE-EEEEEEEcCCCCcEEEEEEEEECCccccc
Confidence 799999876 47899999999999999999999999999999988777 77776655433344556667665443322
Q ss_pred cCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHH
Q 029277 141 EWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVM 176 (196)
Q Consensus 141 ~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~ 176 (196)
. ..++..+++|++++++..+...+..+.+++.+++
T Consensus 92 ~-~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~ 126 (137)
T cd03427 92 L-KESEEGILDWFDIDDLPLLPMWPGDREWLPLMLE 126 (137)
T ss_pred C-CCCccccceEEcHhhcccccCCCCcHHHHHHHhC
Confidence 2 2445578999999999988777888888877663
No 15
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.85 E-value=1.5e-20 Score=139.34 Aligned_cols=120 Identities=21% Similarity=0.159 Sum_probs=87.4
Q ss_pred EEEEEEEEeeccCCcccccCCceEEEEEEEcC--CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEE--
Q 029277 41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN-- 116 (196)
Q Consensus 41 ~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~--~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~-- 116 (196)
++.+++++.. ++++|||+++.+ .+.|.+|||+++.||++.+||.||++||||+.+..... +..+.
T Consensus 3 ~~~v~~~~~~----------~~~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~-~~~~~~~ 71 (129)
T cd04664 3 SVLVVPYRLT----------GEGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTL-LDRGASI 71 (129)
T ss_pred EEEEEEEEeC----------CCCEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEE-Eeecccc
Confidence 4567777763 345899999887 58899999999999999999999999999999755444 43322
Q ss_pred --eeeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHH
Q 029277 117 --FKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEAL 171 (196)
Q Consensus 117 --~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l 171 (196)
+...........++|.+..........++|+.+++|++++++.+++.++.++.++
T Consensus 72 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~ 128 (129)
T cd04664 72 AFVEFTDNGRVWTEHPFAFHLPSDAVVTLDWEHDAFEWVPPEEAAALLLWESNRRAW 128 (129)
T ss_pred cccccCCCceEEEEeEEEEEcCCCCcccCCccccccEecCHHHHHHHHcChhhhhhh
Confidence 1122222334566777776544322334577899999999999999988777654
No 16
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.85 E-value=2.6e-20 Score=136.08 Aligned_cols=112 Identities=22% Similarity=0.273 Sum_probs=82.4
Q ss_pred EEEEEEEEeeccCCcccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEe
Q 029277 41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF 117 (196)
Q Consensus 41 ~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~---~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~ 117 (196)
+|++++++.+ ++||+++.+ .+.|.+|||+++.||++++||.||++||||+.+..... ++.+.+
T Consensus 2 ~v~~ii~~~~-------------~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~-~~~~~~ 67 (122)
T cd04673 2 AVGAVVFRGG-------------RVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRL-LTVVDV 67 (122)
T ss_pred cEEEEEEECC-------------EEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeecee-EEEEEE
Confidence 4667777642 799999875 36799999999999999999999999999999887776 666655
Q ss_pred eeCCC----CceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhH
Q 029277 118 KSRAH----NTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWM 167 (196)
Q Consensus 118 ~~~~~----~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~ 167 (196)
..... ......+.|.+....... .+..|+.+++|++++++.++...+.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~E~~~~~w~~~~el~~~~~~~~~ 120 (122)
T cd04673 68 IERDAAGRVEFHYVLIDFLCRYLGGEP-VAGDDALDARWVPLDELAALSLTEST 120 (122)
T ss_pred eeccCCCccceEEEEEEEEEEeCCCcc-cCCcccceeEEECHHHHhhCcCCccc
Confidence 44321 123344556665544332 34467799999999999988766543
No 17
>PLN02325 nudix hydrolase
Probab=99.85 E-value=2e-20 Score=141.86 Aligned_cols=122 Identities=17% Similarity=0.127 Sum_probs=86.7
Q ss_pred CCceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceee
Q 029277 36 KGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELL 112 (196)
Q Consensus 36 ~~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~---~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l 112 (196)
..++.+|++++++.+ +|||++|.+ .+.|.+|||+++.||++.+||+||++||||+.+..... +
T Consensus 6 ~~p~~~v~~vi~~~~-------------~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~-l 71 (144)
T PLN02325 6 PIPRVAVVVFLLKGN-------------SVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIEL-L 71 (144)
T ss_pred CCCeEEEEEEEEcCC-------------EEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEE-E
Confidence 356788888888742 799999875 36899999999999999999999999999999988777 7
Q ss_pred eeEEeeeCC--CCceEEEEEEEEeeccccc---cCCcCccceeEEEeHHHHHhhccchhHHHHHH
Q 029277 113 GEWNFKSRA--HNTDYQGYMFPLLVQDQLA---EWPEKNVRSRKWMSVAEARKVCQHWWMKEALD 172 (196)
Q Consensus 113 ~~~~~~~~~--~~~~~~~~~f~~~~~~~~~---~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~ 172 (196)
+.+.+.... ...++..++|.+...+... ....++..+++|+++++++..+..+ .+.++.
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~~~~p-~~~~~~ 135 (144)
T PLN02325 72 TVTNNVFLEEPKPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEPLFWP-LEKLVG 135 (144)
T ss_pred EEecceeecCCCCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCChhhhHH-HHHHHH
Confidence 765443322 2234555666666543321 1122345789999999998765543 334443
No 18
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.85 E-value=2.3e-20 Score=137.42 Aligned_cols=116 Identities=11% Similarity=0.097 Sum_probs=84.8
Q ss_pred ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEe
Q 029277 38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF 117 (196)
Q Consensus 38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~ 117 (196)
|++.|++++++++ ++||+++++.+.|.+|||+++.||++.+||.||++||||+.+..... ++.+..
T Consensus 1 p~~~v~~~i~~~~-------------~vLL~~~~~~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~-~~~~~~ 66 (123)
T cd04672 1 PKVDVRAAIFKDG-------------KILLVREKSDGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKL-AAVDDR 66 (123)
T ss_pred CcceEEEEEEECC-------------EEEEEEEcCCCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEE-EEEecc
Confidence 4677888888753 79999998889999999999999999999999999999999866655 555433
Q ss_pred eeCC---CCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHH
Q 029277 118 KSRA---HNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMK 168 (196)
Q Consensus 118 ~~~~---~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~ 168 (196)
.... ...+...++|.+........ +.+|..+++|++++++.++.....+.
T Consensus 67 ~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~E~~~~~W~~~~el~~l~~~~~~~ 119 (123)
T cd04672 67 NKHHPPPQPYQVYKLFFLCEILGGEFK-PNIETSEVGFFALDDLPPLSEKRNTE 119 (123)
T ss_pred ccccCCCCceEEEEEEEEEEecCCccc-CCCceeeeEEECHHHCcccccCCcch
Confidence 2211 11223445666666543222 33678999999999998876554433
No 19
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.85 E-value=1.6e-20 Score=136.95 Aligned_cols=115 Identities=20% Similarity=0.242 Sum_probs=85.6
Q ss_pred EEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeee-ecceeeeeEEeee
Q 029277 41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGI-VECELLGEWNFKS 119 (196)
Q Consensus 41 ~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~-~~~~~l~~~~~~~ 119 (196)
+|.+++++.+ +++||+++...+.|.+|||+++.||++++||+||++||||+.+. .... ++.+.+..
T Consensus 2 ~~~~~i~~~~------------~~vLL~~r~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~-~~~~~~~~ 68 (120)
T cd04680 2 GARAVVTDAD------------GRVLLVRHTYGPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAEL-LGVYYHSA 68 (120)
T ss_pred ceEEEEECCC------------CeEEEEEECCCCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccce-EEEEecCC
Confidence 4567777653 27999998877799999999999999999999999999999998 6666 66665443
Q ss_pred CCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHH
Q 029277 120 RAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEAL 171 (196)
Q Consensus 120 ~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l 171 (196)
. ......++|.+.........+++|..+++|++++++.+.+... .++.+
T Consensus 69 ~--~~~~~~~~f~~~~~~~~~~~~~~E~~~~~w~~~~~l~~~~~~~-~~~~~ 117 (120)
T cd04680 69 S--GSWDHVIVFRARADTQPVIRPSHEISEARFFPPDALPEPTTPA-TRRRI 117 (120)
T ss_pred C--CCceEEEEEEecccCCCccCCcccEEEEEEECHHHCcccCChH-HHHHh
Confidence 2 2234556777766544333455678999999999999876644 44433
No 20
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.85 E-value=4e-20 Score=140.39 Aligned_cols=110 Identities=20% Similarity=0.262 Sum_probs=75.8
Q ss_pred EEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeee
Q 029277 40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKS 119 (196)
Q Consensus 40 ~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~ 119 (196)
.++|+|+++.+ +++|||+++...+.|+||||++|.|||+.+||+||++||||+.+..... ...+. .
T Consensus 2 p~~gaii~~~~-----------~~~vLLvr~~~~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~-~~~~~--~ 67 (145)
T cd03672 2 PVYGAIILNED-----------LDKVLLVKGWKSKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYID-KDDYI--E 67 (145)
T ss_pred CeeEEEEEeCC-----------CCEEEEEEecCCCCEECCCccCCCCcCHHHHHHHHHHHhhCccceeccc-cceee--e
Confidence 36889999863 2379999987778999999999999999999999999999999765322 12221 1
Q ss_pred CCCCceEEEEEEEEe-eccccc--cCCcCccceeEEEeHHHHHhhccc
Q 029277 120 RAHNTDYQGYMFPLL-VQDQLA--EWPEKNVRSRKWMSVAEARKVCQH 164 (196)
Q Consensus 120 ~~~~~~~~~~~f~~~-~~~~~~--~~~~~e~~~~~W~~~~el~~~~~~ 164 (196)
...... ..++|.+. ...... ..+.+|+.+++|++++++.++...
T Consensus 68 ~~~~~~-~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 114 (145)
T cd03672 68 LIIRGQ-NVKLYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNK 114 (145)
T ss_pred cccCCc-EEEEEEEecCCCCcccCcCChhhhheEEEeeHHHhhhhhhh
Confidence 111122 23344333 222111 223457899999999999988644
No 21
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.84 E-value=3.6e-20 Score=137.18 Aligned_cols=111 Identities=25% Similarity=0.210 Sum_probs=84.6
Q ss_pred ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeee
Q 029277 38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE 114 (196)
Q Consensus 38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~---~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~ 114 (196)
+|.++++++++.+ +++||++|.. .+.|.+|||+++.||++.+||.||++||||+.+..... ++.
T Consensus 1 p~~~v~~ii~~~~------------~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~-~~~ 67 (129)
T cd04678 1 PRVGVGVFVLNPK------------GKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQF-LTV 67 (129)
T ss_pred CceEEEEEEECCC------------CeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEE-EEE
Confidence 5788999999863 2799998873 47899999999999999999999999999999877666 665
Q ss_pred EEeeeCCCCceEEEEEEEEeeccccccC---CcCccceeEEEeHHHHHhh
Q 029277 115 WNFKSRAHNTDYQGYMFPLLVQDQLAEW---PEKNVRSRKWMSVAEARKV 161 (196)
Q Consensus 115 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~---~~~e~~~~~W~~~~el~~~ 161 (196)
+.........++...+|.+......... ..++..+++|++++++.++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~ 117 (129)
T cd04678 68 TNDVFEEEGKHYVTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSV 117 (129)
T ss_pred EeEEeCCCCcEEEEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCc
Confidence 5443333344566667777765433222 2345688999999999876
No 22
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.84 E-value=5.3e-20 Score=135.82 Aligned_cols=112 Identities=20% Similarity=0.161 Sum_probs=84.0
Q ss_pred EEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeee
Q 029277 40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKS 119 (196)
Q Consensus 40 ~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~ 119 (196)
+.|.+|+++++ +|||+++.+.+.|.+|||+++.||++.+||.||+.||||+.+..... ++.+....
T Consensus 2 ~~v~~vi~~~~-------------~vLl~~~~~~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~ 67 (126)
T cd04688 2 VRAAAIIIHNG-------------KLLVQKNPDETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRL-LGVVENIF 67 (126)
T ss_pred eEEEEEEEECC-------------EEEEEEeCCCCeEECCCccccCCCCHHHHHHHHHHHHhCCceeccee-eEEEEEee
Confidence 35667777742 79999887778899999999999999999999999999999888776 66654322
Q ss_pred C--CCCceEEEEEEEEeeccccccC-------CcCccceeEEEeHHHHHhhccch
Q 029277 120 R--AHNTDYQGYMFPLLVQDQLAEW-------PEKNVRSRKWMSVAEARKVCQHW 165 (196)
Q Consensus 120 ~--~~~~~~~~~~f~~~~~~~~~~~-------~~~e~~~~~W~~~~el~~~~~~~ 165 (196)
. ....+...++|.+......... ++.++.++.|++++++..+...|
T Consensus 68 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~p 122 (126)
T cd04688 68 TYNGKPGHEIEFYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKEIKLYP 122 (126)
T ss_pred ccCCcccEEEEEEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHcccCccCC
Confidence 2 2223455678877776543321 34577999999999998765544
No 23
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.84 E-value=7.2e-20 Score=135.00 Aligned_cols=119 Identities=18% Similarity=0.135 Sum_probs=84.3
Q ss_pred eEEEEEEEEEeeccCCcccccCCceEEEEEEEcC-CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEe
Q 029277 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF 117 (196)
Q Consensus 39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~-~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~ 117 (196)
..+|++++++.+ +++||+++.. .+.|.+|||+++.|||+++||+||++||||+.+..... ++...+
T Consensus 2 ~~~v~~~i~~~~------------~~iLL~r~~~~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~ 68 (125)
T cd04696 2 LVTVGALIYAPD------------GRILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKF-AMVQEA 68 (125)
T ss_pred ccEEEEEEECCC------------CCEEEEEccCCCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccce-EEEEEE
Confidence 356788888753 2799998754 47899999999999999999999999999999877665 444333
Q ss_pred eeCC---CCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHH
Q 029277 118 KSRA---HNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEAL 171 (196)
Q Consensus 118 ~~~~---~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l 171 (196)
.... ...++..+.|.+..... ...+.+|..+++|++++++.++...+...+++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~ 124 (125)
T cd04696 69 IFSEEFHKPAHFVLFDFFARTDGT-EVTPNEEIVEWEWVTPEEALDYPLNSFTRLLL 124 (125)
T ss_pred eccCCCCCccEEEEEEEEEEecCC-cccCCcccceeEEECHHHHhcCCCCHHHHHHh
Confidence 2211 11233445565554432 22344578999999999999887776555443
No 24
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.84 E-value=5.2e-20 Score=136.29 Aligned_cols=113 Identities=19% Similarity=0.260 Sum_probs=83.2
Q ss_pred eEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC--CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEE
Q 029277 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG--KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN 116 (196)
Q Consensus 39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~--~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~ 116 (196)
|.+|++|+++.+ +|||+++.+. +.|.+|||+++.|||+++||+||+.||||+.+..... +..+.
T Consensus 1 r~~a~~iv~~~~-------------~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~-~~~~~ 66 (128)
T cd04687 1 RNSAKAVIIKND-------------KILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPL-LFVRE 66 (128)
T ss_pred CcEEEEEEEECC-------------EEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcE-EEEEE
Confidence 567888888743 7999998644 5699999999999999999999999999999987665 55554
Q ss_pred eeeCC------CCceEEEEEEEEeeccccc----cCCcCccceeEEEeHHHHHhhccch
Q 029277 117 FKSRA------HNTDYQGYMFPLLVQDQLA----EWPEKNVRSRKWMSVAEARKVCQHW 165 (196)
Q Consensus 117 ~~~~~------~~~~~~~~~f~~~~~~~~~----~~~~~e~~~~~W~~~~el~~~~~~~ 165 (196)
+.... ...+...++|.+....... ..++.+..+++|++++++.++..++
T Consensus 67 ~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~~~~p 125 (128)
T cd04687 67 YIGHNPTSELPGHFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDIPLYP 125 (128)
T ss_pred EeccCccccCCCceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCcccccC
Confidence 43221 1234556677777654321 1233445789999999998886655
No 25
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.84 E-value=5e-20 Score=135.31 Aligned_cols=121 Identities=20% Similarity=0.177 Sum_probs=87.6
Q ss_pred eEEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEE--
Q 029277 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN-- 116 (196)
Q Consensus 39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~-- 116 (196)
|..|++|+++.+ +++||++|...+.|.||||+++.||++++||.||++||||+.+..... ++.+.
T Consensus 2 ~~~v~~ii~~~~------------~~vLl~~r~~~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~-~~~~~~~ 68 (129)
T cd04676 2 LPGVTAVVRDDE------------GRVLLIRRSDNGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGL-VGIYTGP 68 (129)
T ss_pred cceEEEEEECCC------------CeEEEEEecCCCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEE-EEEeecc
Confidence 567788887752 379999988778999999999999999999999999999999876554 43322
Q ss_pred ---eeeCCCC-ceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHHH
Q 029277 117 ---FKSRAHN-TDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALD 172 (196)
Q Consensus 117 ---~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~ 172 (196)
+...... .....++|.+.........+..|..+++|++++++..+..++.++.+++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~ 128 (129)
T cd04676 69 VHVVTYPNGDVRQYLDITFRCRVVGGELRVGDDESLDVAWFDPDGLPPLLMHPSMRLRID 128 (129)
T ss_pred cceeecCCCCcEEEEEEEEEEEeeCCeecCCCCceeEEEEEChhhCccccCCHhHHHHhc
Confidence 1111111 1334455655554433323455778999999999999988887777664
No 26
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.84 E-value=7.5e-20 Score=134.83 Aligned_cols=107 Identities=20% Similarity=0.144 Sum_probs=79.2
Q ss_pred eEEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEee
Q 029277 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK 118 (196)
Q Consensus 39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~ 118 (196)
++.|++++++.+ ++||+++...+.|.+|||+++.||++.+||.||++||||+.+..... ++.+.+.
T Consensus 1 ~~~~~~vi~~~~-------------~vLlv~~~~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~-l~~~~~~ 66 (125)
T cd04689 1 HLRARAIVRAGN-------------KVLLARVIGQPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRF-LGAIENQ 66 (125)
T ss_pred CeEEEEEEEeCC-------------EEEEEEecCCCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEE-EEEEeee
Confidence 356788888643 79999988778999999999999999999999999999999887776 7765543
Q ss_pred eCCCC--ceEEEEEEEEeecccc---ccCCcCccceeEEEeHHHHH
Q 029277 119 SRAHN--TDYQGYMFPLLVQDQL---AEWPEKNVRSRKWMSVAEAR 159 (196)
Q Consensus 119 ~~~~~--~~~~~~~f~~~~~~~~---~~~~~~e~~~~~W~~~~el~ 159 (196)
..... .+...++|.+...... ....++++.+++|++++++.
T Consensus 67 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~ 112 (125)
T cd04689 67 WHEKGVRTHEINHIFAVESSWLASDGPPQADEDHLSFSWVPVSDLS 112 (125)
T ss_pred eccCCceEEEEEEEEEEEcccccccCCccCccceEEEEEccHHHcc
Confidence 33222 2344566766654321 12233457899999999964
No 27
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.84 E-value=6.4e-20 Score=138.67 Aligned_cols=118 Identities=18% Similarity=0.152 Sum_probs=87.8
Q ss_pred CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeee
Q 029277 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG 113 (196)
Q Consensus 37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~---~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~ 113 (196)
-+..+|++++++.+ .++||++++.. +.|+||||++++||++++||+||++||||+.+..... ++
T Consensus 11 ~~~~av~~vv~~~~------------~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~-~~ 77 (142)
T cd04700 11 VEARAAGAVILNER------------NDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKF-LG 77 (142)
T ss_pred eeeeeEEEEEEeCC------------CcEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEE-EE
Confidence 34578888998853 26999987642 6799999999999999999999999999999988776 77
Q ss_pred eEEeeeCCCCceEEEEEEEEeecccc-ccCCcCccceeEEEeHHHHHhhccchhHH
Q 029277 114 EWNFKSRAHNTDYQGYMFPLLVQDQL-AEWPEKNVRSRKWMSVAEARKVCQHWWMK 168 (196)
Q Consensus 114 ~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~~~~e~~~~~W~~~~el~~~~~~~~~~ 168 (196)
.+.+.... ......++|.+...... .....+|+.+++|++++++.+++..+.+.
T Consensus 78 ~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~g~i~ 132 (142)
T cd04700 78 TYLGRFDD-GVLVLRHVWLAEPEGQTLAPKFTDEIAEASFFSREDVAQLYAQGQLR 132 (142)
T ss_pred EEEEEcCC-CcEEEEEEEEEEecCCccccCCCCCEEEEEEECHHHhhhcccccccc
Confidence 66544432 22334567777664332 22234678999999999999998776543
No 28
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=1e-19 Score=134.47 Aligned_cols=113 Identities=22% Similarity=0.230 Sum_probs=77.5
Q ss_pred eEEEEEEEEEeeccCCcccccCCceEEEEEEEcC--CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEE
Q 029277 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN 116 (196)
Q Consensus 39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~--~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~ 116 (196)
+..|++++++.+ ++|||++++. .+.|.+|||+++.|||+++||.||++||||+.+..... ++...
T Consensus 2 ~~~~~~~v~~~~------------~~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~-~~~~~ 68 (127)
T cd04670 2 TVGVGGLVLNEK------------NEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSV-VGFRH 68 (127)
T ss_pred eeEEEEEEEcCC------------CeEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEE-EEEEe
Confidence 467888888753 2799999877 58999999999999999999999999999999876654 44333
Q ss_pred eeeCCCCceEEEEEEEEeecc--ccccCCcCccceeEEEeHHHHHhhccchh
Q 029277 117 FKSRAHNTDYQGYMFPLLVQD--QLAEWPEKNVRSRKWMSVAEARKVCQHWW 166 (196)
Q Consensus 117 ~~~~~~~~~~~~~~f~~~~~~--~~~~~~~~e~~~~~W~~~~el~~~~~~~~ 166 (196)
+.... .. ...++|.+.... .......+|..+++|++++++.+......
T Consensus 69 ~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~ 118 (127)
T cd04670 69 AHPGA-FG-KSDLYFICRLKPLSFDINFDTSEIAAAKWMPLEEYISQPITSE 118 (127)
T ss_pred cCCCC-cC-ceeEEEEEEEccCcCcCCCChhhhheeEEEcHHHHhcchhHHH
Confidence 22111 11 112234443332 11122345678899999999976644443
No 29
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=6.3e-20 Score=135.91 Aligned_cols=121 Identities=21% Similarity=0.202 Sum_probs=84.6
Q ss_pred EEEEEEEEeeccCCcccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEe
Q 029277 41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF 117 (196)
Q Consensus 41 ~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~---~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~ 117 (196)
+|++++++.+ +++||+++.+. +.|.+|||+++.|||+.+||.||++||||+.+..... ++.+..
T Consensus 3 av~~~i~~~~------------~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~-~~~~~~ 69 (130)
T cd04681 3 AVGVLILNED------------GELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSY-LFSLPN 69 (130)
T ss_pred eEEEEEEcCC------------CcEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeE-EEeecc
Confidence 5666776643 27999988643 6899999999999999999999999999999876665 555432
Q ss_pred eeCCCC--ceEEEEEEEEeeccccccCCcCccceeEEEeHHHHH-hhccchhHHHHHHHH
Q 029277 118 KSRAHN--TDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEAR-KVCQHWWMKEALDRL 174 (196)
Q Consensus 118 ~~~~~~--~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~-~~~~~~~~~~~l~~~ 174 (196)
..+... .....++|.+...........+|+.+++|++++++. ..+.++..+.+++.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~~~~~ 129 (130)
T cd04681 70 TYPYGGMEYDTLDLFFVCQVDDKPIVKAPDDVAELKWVVPQDIELENFAFPSIRQAVERW 129 (130)
T ss_pred eeeeCCceeEEEEEEEEEEeCCCCCcCChHHhheeEEecHHHCCcccCCcHHHHHHHHhh
Confidence 222111 223334566666543333334577999999999985 456667777777653
No 30
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.83 E-value=7.2e-20 Score=139.03 Aligned_cols=113 Identities=21% Similarity=0.230 Sum_probs=86.7
Q ss_pred CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeee
Q 029277 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG 113 (196)
Q Consensus 37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~---~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~ 113 (196)
.++..+++++.+.+ +|||++|... |.|.||||++|.|||+++||.||++||||+++....+ ++
T Consensus 8 ~p~~~v~~~i~~~~-------------~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~-~~ 73 (145)
T COG1051 8 TPLVAVGALIVRNG-------------RILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLEL-LA 73 (145)
T ss_pred CcceeeeEEEEeCC-------------EEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeE-EE
Confidence 56788888888863 7999999876 7899999999999999999999999999999888888 77
Q ss_pred eEEeeeCCCCceEEEEEEEEeeccc-cccCCcCccceeEEEeHHHHHhhcc
Q 029277 114 EWNFKSRAHNTDYQGYMFPLLVQDQ-LAEWPEKNVRSRKWMSVAEARKVCQ 163 (196)
Q Consensus 114 ~~~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~e~~~~~W~~~~el~~~~~ 163 (196)
+++....+...++..++|.+..... ......++...+.|++++++..+..
T Consensus 74 v~~~~~rd~r~~~v~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~l~~~~~ 124 (145)
T COG1051 74 VFDDPGRDPRGHHVSFLFFAAEPEGELLAGDGDDAAEVGWFPLDELPELPL 124 (145)
T ss_pred EecCCCCCCceeEEEEEEEEEecCCCcccCChhhHhhcceecHhHcccccc
Confidence 7776555434455555555554333 2222223668999999999987643
No 31
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.83 E-value=3e-19 Score=135.57 Aligned_cols=123 Identities=18% Similarity=0.231 Sum_probs=85.3
Q ss_pred ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeee--
Q 029277 38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE-- 114 (196)
Q Consensus 38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~-- 114 (196)
+|.+|++|+++.+ +++||+++.+. +.|.+|||++++||++.+||.||++||||+.+..... ++.
T Consensus 2 ~~~~v~~ii~~~~------------~~vLL~~r~~~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~-l~~~~ 68 (147)
T cd03671 2 YRPNVGVVLFNED------------GKVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEI-IAEIP 68 (147)
T ss_pred CCceEEEEEEeCC------------CEEEEEEEcCCCCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEE-EEEcC
Confidence 5788999999853 27999998876 5999999999999999999999999999999766554 443
Q ss_pred --EEeeeCCC---------CceEEEEEEEEeecc--cc-ccC--CcCccceeEEEeHHHHHhhccchhHHHHHHHH
Q 029277 115 --WNFKSRAH---------NTDYQGYMFPLLVQD--QL-AEW--PEKNVRSRKWMSVAEARKVCQHWWMKEALDRL 174 (196)
Q Consensus 115 --~~~~~~~~---------~~~~~~~~f~~~~~~--~~-~~~--~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~ 174 (196)
+.|..+.. ......++|.+.... .. ... +++|+.+++|++++++.+++.. ..+.++..+
T Consensus 69 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~~~-~~~~~~~~~ 143 (147)
T cd03671 69 DWLRYDLPPELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLIVP-FKRPVYEAV 143 (147)
T ss_pred CeeEeeChhhhhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhchh-hhHHHHHHH
Confidence 22332211 011233455554433 11 111 2457899999999999998753 444555443
No 32
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=1.8e-19 Score=133.60 Aligned_cols=114 Identities=21% Similarity=0.173 Sum_probs=79.2
Q ss_pred ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEE-
Q 029277 38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN- 116 (196)
Q Consensus 38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~- 116 (196)
++..|++++++.+ .++||+++.+.+.|.||||+++.||++.+||.||++||||+.+..... ++.+.
T Consensus 6 ~~~~~~~~v~~~~------------~~vLL~~r~~~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~-~~~~~~ 72 (132)
T cd04677 6 ILVGAGVILLNEQ------------GEVLLQKRSDTGDWGLPGGAMELGESLEETARRELKEETGLEVEELEL-LGVYSG 72 (132)
T ss_pred cccceEEEEEeCC------------CCEEEEEecCCCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEE-EEEecC
Confidence 3456667777653 279999988778899999999999999999999999999999887666 54432
Q ss_pred ---eeeCCCCc-eEEE-EEEEEeeccccccCCcCccceeEEEeHHHHHhhccc
Q 029277 117 ---FKSRAHNT-DYQG-YMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQH 164 (196)
Q Consensus 117 ---~~~~~~~~-~~~~-~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~ 164 (196)
+....... .... ++|...........+.+|..+++|++++++.+++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~ 125 (132)
T cd04677 73 KEFYVKPNGDDEQYIVTLYYVTKVFGGKLVPDGDETLELKFFSLDELPELINP 125 (132)
T ss_pred CceeecCCCCcEEEEEEEEEEEeccCCcccCCCCceeeEEEEChhHCccchhH
Confidence 21111111 2223 333333333322345567799999999999877654
No 33
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=2.1e-19 Score=132.10 Aligned_cols=106 Identities=24% Similarity=0.204 Sum_probs=76.6
Q ss_pred EEEEEEEEeeccCCcccccCCceEEEEEEEcCC--CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEee
Q 029277 41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG--KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK 118 (196)
Q Consensus 41 ~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~--~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~ 118 (196)
.|++|+++.+ ++|||+++.+. +.|.||||+++.|||+.+||+||++||||+.+..... ++.+.+
T Consensus 2 ~~~~ii~~~~------------~~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~-~~~~~~- 67 (121)
T cd04669 2 RASIVIINDQ------------GEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEI-FLIVNQ- 67 (121)
T ss_pred ceEEEEEeCC------------CEEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeE-EEEEee-
Confidence 4677777752 27999998654 5799999999999999999999999999999977766 665544
Q ss_pred eCCCCceEEEEEEEEeeccccccC---------CcCccceeEEEeHHHHHhhccch
Q 029277 119 SRAHNTDYQGYMFPLLVQDQLAEW---------PEKNVRSRKWMSVAEARKVCQHW 165 (196)
Q Consensus 119 ~~~~~~~~~~~~f~~~~~~~~~~~---------~~~e~~~~~W~~~~el~~~~~~~ 165 (196)
. . ...++|.+......... .+.+..++.|++++++..+...|
T Consensus 68 -~--~--~~~~~f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~~~p 118 (121)
T cd04669 68 -N--G--RTEHYFLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETIPLRP 118 (121)
T ss_pred -C--C--cEEEEEEEEEECCeecCCCchhhcccCCCCceEEEEEEHHHcccCCCCC
Confidence 1 1 12456666544321110 12335679999999999876554
No 34
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.82 E-value=3.5e-19 Score=134.12 Aligned_cols=108 Identities=16% Similarity=0.128 Sum_probs=72.5
Q ss_pred EEEEEEEcCC-----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeee-eE----E-eeeCCCCc--eEEE-E
Q 029277 64 EVLVISSQKG-----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG-EW----N-FKSRAHNT--DYQG-Y 129 (196)
Q Consensus 64 ~vLLv~~~~~-----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~-~~----~-~~~~~~~~--~~~~-~ 129 (196)
+|||++|... |.|.+|||++++|||+.+||.||++||||+.+..... .. .+ . ........ .+.. .
T Consensus 16 ~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (141)
T PRK15472 16 AYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLTEI-TPWTFRDDIRTKTYADGRKEEIYMIYL 94 (141)
T ss_pred EEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeeee-ccccccccceeEEecCCCceeEEEEEE
Confidence 7999997643 7899999999999999999999999999998754332 10 11 0 11111111 1111 2
Q ss_pred EEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHHHH
Q 029277 130 MFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDR 173 (196)
Q Consensus 130 ~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~ 173 (196)
+|.+..... ...+.+|+.+++|++++++.++...+..+.+++.
T Consensus 95 ~~~~~~~~~-~~~~~~E~~~~~w~~~~el~~l~~~~~~~~~~~~ 137 (141)
T PRK15472 95 IFDCVSANR-DVKINEEFQDYAWVKPEDLVHYDLNVATRKTLRL 137 (141)
T ss_pred EEEeecCCC-cccCChhhheEEEccHHHhccccccHHHHHHHHH
Confidence 233332222 2223467899999999999999888887777754
No 35
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=2.6e-19 Score=129.72 Aligned_cols=99 Identities=20% Similarity=0.225 Sum_probs=74.5
Q ss_pred EEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeeccccccCC
Q 029277 64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWP 143 (196)
Q Consensus 64 ~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 143 (196)
++||+++.+ +.|.+|||++++||++.+||.||++||||+.+..... ++.+. . .....++|.+.........+
T Consensus 12 ~vLlv~r~~-~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~-~~~~~--~----~~~~~~~f~~~~~~~~~~~~ 83 (112)
T cd04667 12 RVLLVRKSG-SRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLY-LFHVD--G----GSTRHHVFVASVPPSAQPKP 83 (112)
T ss_pred EEEEEEcCC-CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEE-EEEEe--C----CCEEEEEEEEEcCCcCCCCC
Confidence 799999865 8899999999999999999999999999999765554 44332 1 12334566666554333335
Q ss_pred cCccceeEEEeHHHHHhhccchhHHHH
Q 029277 144 EKNVRSRKWMSVAEARKVCQHWWMKEA 170 (196)
Q Consensus 144 ~~e~~~~~W~~~~el~~~~~~~~~~~~ 170 (196)
.+|+.+++|++++++.++...+..+.+
T Consensus 84 ~~e~~~~~W~~~~el~~~~~~~~~~~~ 110 (112)
T cd04667 84 SNEIADCRWLSLDALGDLNASAATRLI 110 (112)
T ss_pred chheeEEEEecHHHhhhcccchhhhhh
Confidence 567899999999999998877655543
No 36
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.81 E-value=3.3e-19 Score=132.54 Aligned_cols=113 Identities=19% Similarity=0.175 Sum_probs=83.4
Q ss_pred CCceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceee
Q 029277 36 KGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELL 112 (196)
Q Consensus 36 ~~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~---~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l 112 (196)
..++.+|++|+++.+ ++||+++.. .|.|.+|||+++.||++++||.||++||||+.+..... +
T Consensus 10 ~~~~~~v~~ii~~~~-------------~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~-~ 75 (130)
T cd04511 10 QNPKIIVGCVPEWEG-------------KVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGL-Y 75 (130)
T ss_pred CCCcEEEEEEEecCC-------------EEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeE-E
Confidence 356778888888743 799999853 47899999999999999999999999999999877665 6
Q ss_pred eeEEeeeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHH-hhccchhH
Q 029277 113 GEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEAR-KVCQHWWM 167 (196)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~-~~~~~~~~ 167 (196)
+.+.. + ......++|.+...... ..+..|..+.+|++++++. +.+.++..
T Consensus 76 ~~~~~--~--~~~~~~~~f~~~~~~~~-~~~~~e~~~~~~~~~~~l~~~~l~~~~~ 126 (130)
T cd04511 76 AVYSV--P--HISQVYMFYRARLLDLD-FAPGPESLEVRLFTEEEIPWDELAFPTV 126 (130)
T ss_pred EEEec--C--CceEEEEEEEEEEcCCc-ccCCcchhceEEECHHHCCchhcccccc
Confidence 55543 2 22345667777775432 2244567899999999996 33444433
No 37
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=2.9e-19 Score=130.09 Aligned_cols=99 Identities=17% Similarity=0.227 Sum_probs=74.6
Q ss_pred EEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeee--cceeeeeEEeeeCCC-CceEEEEEEEEeeccccc
Q 029277 64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIV--ECELLGEWNFKSRAH-NTDYQGYMFPLLVQDQLA 140 (196)
Q Consensus 64 ~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~--~~~~l~~~~~~~~~~-~~~~~~~~f~~~~~~~~~ 140 (196)
++||++++..+.|.+|||++++||++++||.||++||||+.+.. ... ++.+.+..... ......++|.+.... .
T Consensus 13 ~vLl~~r~~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~~--~ 89 (118)
T cd04690 13 RVLLVRKRGTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEY-LGTFRAPAANEPGVDVRATVYVAELTG--E 89 (118)
T ss_pred eEEEEEECCCCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEE-EEEEecccccCCCcEEEEEEEEEcccC--C
Confidence 89999988778999999999999999999999999999999876 555 66555432221 234456677766554 2
Q ss_pred cCCcCccceeEEEeHHHHHhhccch
Q 029277 141 EWPEKNVRSRKWMSVAEARKVCQHW 165 (196)
Q Consensus 141 ~~~~~e~~~~~W~~~~el~~~~~~~ 165 (196)
..+.+++.+++|++++++......+
T Consensus 90 ~~~~~e~~~~~W~~~~e~~~~~~~~ 114 (118)
T cd04690 90 PVPAAEIEEIRWVDYDDPADDRLAP 114 (118)
T ss_pred cCCCchhhccEEecHHHccccccCc
Confidence 3345678999999999986655444
No 38
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=3.9e-19 Score=131.32 Aligned_cols=104 Identities=21% Similarity=0.230 Sum_probs=75.9
Q ss_pred EEEEEEEEeeccCCcccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEe
Q 029277 41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF 117 (196)
Q Consensus 41 ~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~---~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~ 117 (196)
+|++++++.+ ++|||+++.+. +.|.+|||+++.||++++||+||++||||+.+..... ++....
T Consensus 2 ~~~~vv~~~~------------~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~-~~~~~~ 68 (123)
T cd04671 2 IVAAVILNNQ------------GEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTL-LSVEEQ 68 (123)
T ss_pred EEEEEEEcCC------------CEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceE-EEEEcc
Confidence 5677777743 27999997643 6899999999999999999999999999999987776 554321
Q ss_pred eeCCCCceEEEEEEEEeecccccc---CCcCccceeEEEeHHHHHhhc
Q 029277 118 KSRAHNTDYQGYMFPLLVQDQLAE---WPEKNVRSRKWMSVAEARKVC 162 (196)
Q Consensus 118 ~~~~~~~~~~~~~f~~~~~~~~~~---~~~~e~~~~~W~~~~el~~~~ 162 (196)
......++|.+...++... .++.++.+++|++++++...+
T Consensus 69 -----~~~~~~~~f~a~~~~g~~~~~~~~~~e~~~~~W~~~~el~~~~ 111 (123)
T cd04671 69 -----GGSWFRFVFTGNITGGDLKTEKEADSESLQARWYSNKDLPLPL 111 (123)
T ss_pred -----CCeEEEEEEEEEEeCCeEccCCCCCcceEEEEEECHHHCCCcc
Confidence 1234556777765543221 133466799999999995434
No 39
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=1e-18 Score=130.26 Aligned_cols=107 Identities=22% Similarity=0.308 Sum_probs=74.6
Q ss_pred EEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceee-eecceeeeeEEeee
Q 029277 41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTG-IVECELLGEWNFKS 119 (196)
Q Consensus 41 ~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~-~~~~~~l~~~~~~~ 119 (196)
+|++|+++.+ +|||+++.+.+.|.||||++++||++.+||+||++||||+.+ ..... ++.+....
T Consensus 2 ~~~~ii~~~~-------------~vLLv~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~-l~~~~~~~ 67 (131)
T cd04686 2 AVRAIILQGD-------------KILLLYTKRYGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEK-FGTYTERR 67 (131)
T ss_pred cEEEEEEECC-------------EEEEEEEcCCCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceE-EEEEEeec
Confidence 5778888853 799999887788999999999999999999999999999986 44444 56554211
Q ss_pred C--CC---CceEEEEEEEEeeccccc--cCCcCc---cceeEEEeHHHHHhh
Q 029277 120 R--AH---NTDYQGYMFPLLVQDQLA--EWPEKN---VRSRKWMSVAEARKV 161 (196)
Q Consensus 120 ~--~~---~~~~~~~~f~~~~~~~~~--~~~~~e---~~~~~W~~~~el~~~ 161 (196)
. .. ..+...++|.+....... .....+ ...+.|++++++.+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~~ 119 (131)
T cd04686 68 PWRKPDADIFHMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIEH 119 (131)
T ss_pred cccCCCCceeEEEEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHHh
Confidence 1 11 113345677777654321 111112 146899999998754
No 40
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=6.7e-19 Score=128.65 Aligned_cols=98 Identities=19% Similarity=0.168 Sum_probs=69.2
Q ss_pred EEEEEEEcC----CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeee--cceeeeeEEeeeCCCCceEEEEEEEEeecc
Q 029277 64 EVLVISSQK----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIV--ECELLGEWNFKSRAHNTDYQGYMFPLLVQD 137 (196)
Q Consensus 64 ~vLLv~~~~----~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~--~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~ 137 (196)
+|||++|.+ .+.|.+|||+++.||++.+||+||++||||+.+.. ... ++.+.+.... ......++|.+....
T Consensus 12 ~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~-~~~~~~~~~~-~~~~~~~~f~~~~~~ 89 (120)
T cd04683 12 EVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRL-AHTMHRRTED-IESRIGLFFTVRRWS 89 (120)
T ss_pred EEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEE-EEEEEecCCC-CceEEEEEEEEEeec
Confidence 799999765 36899999999999999999999999999999763 333 4444332221 233445566665433
Q ss_pred cccc-CCcCccceeEEEeHHHHHhhcc
Q 029277 138 QLAE-WPEKNVRSRKWMSVAEARKVCQ 163 (196)
Q Consensus 138 ~~~~-~~~~e~~~~~W~~~~el~~~~~ 163 (196)
.... ...+|+.+++|++++++...+.
T Consensus 90 ~~~~~~~~~e~~~~~W~~~~~l~~~~~ 116 (120)
T cd04683 90 GEPRNCEPDKCAELRWFPLDALPDDTV 116 (120)
T ss_pred CccccCCCCcEeeEEEEchHHCcchhc
Confidence 3222 2335678999999999976653
No 41
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=5.8e-19 Score=129.69 Aligned_cols=96 Identities=20% Similarity=0.072 Sum_probs=69.5
Q ss_pred EEEEEEEcCC------CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeecc
Q 029277 64 EVLVISSQKG------KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQD 137 (196)
Q Consensus 64 ~vLLv~~~~~------~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~ 137 (196)
++||++|.+. |.|.||||+++.||++++||.||++||||+.+..... .....+... ......++|.+....
T Consensus 13 ~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~-~~~~~~~~~--~~~~~~~~f~~~~~~ 89 (122)
T cd04682 13 RLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRI-PWFRVYPSA--SPPGTEHVFVVPLTA 89 (122)
T ss_pred EEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCccccccc-ceeEecccC--CCCceEEEEEEEEec
Confidence 7999998643 7899999999999999999999999999999865333 222222222 223445667666554
Q ss_pred cc-ccCCcCccceeEEEeHHHHHhhc
Q 029277 138 QL-AEWPEKNVRSRKWMSVAEARKVC 162 (196)
Q Consensus 138 ~~-~~~~~~e~~~~~W~~~~el~~~~ 162 (196)
.. .....+|+.+++|++++++.+..
T Consensus 90 ~~~~~~~~~E~~~~~W~~~~el~~~~ 115 (122)
T cd04682 90 REDAILFGDEGQALRLMTVEEFLAHE 115 (122)
T ss_pred CCCccccCchhheeecccHHHHhhcc
Confidence 32 33445677999999999997654
No 42
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=7.5e-19 Score=128.48 Aligned_cols=94 Identities=21% Similarity=0.208 Sum_probs=68.4
Q ss_pred EEEEEEEcC-----CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeeccc
Q 029277 64 EVLVISSQK-----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQ 138 (196)
Q Consensus 64 ~vLLv~~~~-----~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~ 138 (196)
+|||++|.+ .+.|.||||+++.||++++||+||++||||+.+..... ++.+.+.. . .....++|.+.....
T Consensus 12 ~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~-l~~~~~~~--~-~~~~~~~~~~~~~~~ 87 (117)
T cd04691 12 KVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTY-LCSLYHPT--S-ELQLLHYYVVTFWQG 87 (117)
T ss_pred EEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceE-EEEEeccC--C-CeEEEEEEEEEEecC
Confidence 799999853 26899999999999999999999999999999654444 44443221 1 223455666654433
Q ss_pred cccCCcCccceeEEEeHHHHHhhcc
Q 029277 139 LAEWPEKNVRSRKWMSVAEARKVCQ 163 (196)
Q Consensus 139 ~~~~~~~e~~~~~W~~~~el~~~~~ 163 (196)
.. ..+|..++.|+++++++....
T Consensus 88 ~~--~~~E~~~~~W~~~~~l~~~~~ 110 (117)
T cd04691 88 EI--PAQEAAEVHWMTANDIVLASE 110 (117)
T ss_pred CC--CcccccccEEcCHHHcchhhh
Confidence 22 236789999999999986654
No 43
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.80 E-value=1.1e-18 Score=130.16 Aligned_cols=110 Identities=17% Similarity=0.089 Sum_probs=77.2
Q ss_pred eEEEEEEEcC--CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeeccccc
Q 029277 63 LEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLA 140 (196)
Q Consensus 63 ~~vLLv~~~~--~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 140 (196)
.++||+++.+ .+.|.+|||+++.||++.+||.||++||||+.+..... ++.+.+... ....++|.+.......
T Consensus 12 ~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~-l~~~~~~~~----~~~~~~f~~~~~~~~~ 86 (131)
T cd03429 12 DRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRY-VGSQPWPFP----SSLMLGFTAEADSGEI 86 (131)
T ss_pred CEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEE-EeecCCCCC----ceEEEEEEEEEcCCcc
Confidence 4899999876 47899999999999999999999999999999877666 554333221 2344566666554322
Q ss_pred cCCcCccceeEEEeHHHHHhh----ccchhHHHHHHHHHHH
Q 029277 141 EWPEKNVRSRKWMSVAEARKV----CQHWWMKEALDRLVMR 177 (196)
Q Consensus 141 ~~~~~e~~~~~W~~~~el~~~----~~~~~~~~~l~~~~~~ 177 (196)
....+|+.+++|++++++.++ +..+........++..
T Consensus 87 ~~~~~E~~~~~w~~~~el~~~~~~~~~~~~~~~~~~~~~~~ 127 (131)
T cd03429 87 VVDDDELEDARWFSRDEVRAAGEGLPELPPPGSIARQLIEA 127 (131)
T ss_pred cCCchhhhccEeecHHHHhhcccCCccCCCcchHHHHHHHH
Confidence 223457789999999999874 3333334444444443
No 44
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.79 E-value=3.4e-18 Score=127.35 Aligned_cols=112 Identities=15% Similarity=0.064 Sum_probs=83.1
Q ss_pred EEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeecccc
Q 029277 64 EVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL 139 (196)
Q Consensus 64 ~vLLv~~~~~----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~ 139 (196)
+|||++|.++ |.|.||||+++.||++.+||+||+.||||+.+..... ++.+.+..+. .....++|.+......
T Consensus 16 ~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~ 92 (135)
T PRK10546 16 KILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEY-VASHQREVSG--RRIHLHAWHVPDFHGE 92 (135)
T ss_pred EEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCcccccee-EEEEEEecCC--cEEEEEEEEEEEecCc
Confidence 7999988653 6799999999999999999999999999999877665 6655554332 2334455555443221
Q ss_pred ccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHHHHhc
Q 029277 140 AEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTS 180 (196)
Q Consensus 140 ~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~~ 180 (196)
. ...+..+++|++++++..+...+.++.+++.+.+..+.
T Consensus 93 ~--~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~~~ 131 (135)
T PRK10546 93 L--QAHEHQALVWCTPEEALRYPLAPADIPLLEAFMALRAA 131 (135)
T ss_pred c--cccccceeEEcCHHHcccCCCCcCcHHHHHHHHHhhcc
Confidence 1 22356789999999999988888888888877766443
No 45
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.79 E-value=2.3e-18 Score=128.73 Aligned_cols=112 Identities=20% Similarity=0.101 Sum_probs=81.2
Q ss_pred EEEEEEEEEeeccCCcccccCCceEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeE
Q 029277 40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW 115 (196)
Q Consensus 40 ~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~ 115 (196)
.+|++++++.+ +++||+++.+. +.|.+|||+++.||++.+||+||++||||+.+..... ++.+
T Consensus 3 ~~v~v~~~~~~------------~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~-~~~~ 69 (137)
T cd03424 3 DAVAVLPYDDD------------GKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEK-LGSF 69 (137)
T ss_pred CEEEEEEEcCC------------CeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEE-EeeE
Confidence 46777888763 37999986542 4799999999999999999999999999999875444 5444
Q ss_pred EeeeCCCCceEEEEEEEEeecccc--ccCCcCccceeEEEeHHHHHhhccchh
Q 029277 116 NFKSRAHNTDYQGYMFPLLVQDQL--AEWPEKNVRSRKWMSVAEARKVCQHWW 166 (196)
Q Consensus 116 ~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~e~~~~~W~~~~el~~~~~~~~ 166 (196)
.+. ........++|.+...... ....+.|+.+++|++++++.+++..+.
T Consensus 70 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~ 120 (137)
T cd03424 70 YPS--PGFSDERIHLFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELLADGE 120 (137)
T ss_pred ecC--CcccCccEEEEEEEcccccccCCCCCCCeeEEEEecHHHHHHHHHcCC
Confidence 322 2222334556666655432 233456789999999999998887664
No 46
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.78 E-value=4.7e-18 Score=130.48 Aligned_cols=128 Identities=19% Similarity=0.203 Sum_probs=88.0
Q ss_pred CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeE
Q 029277 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW 115 (196)
Q Consensus 37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~ 115 (196)
.+|.++++++++.+ ++|||+++.+. +.|.+|||++++||++++||.||++||||+.+..... ++.+
T Consensus 6 ~~~~~v~~~i~~~~------------g~vLL~~r~~~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~-~~~~ 72 (156)
T PRK00714 6 GYRPNVGIILLNRQ------------GQVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEI-LAET 72 (156)
T ss_pred CCCCeEEEEEEecC------------CEEEEEEEcCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEE-EEEc
Confidence 57889999999864 27999998664 7899999999999999999999999999999765554 4432
Q ss_pred ----EeeeCCC-----C---ceEEEEEEEEeeccc--c-c--cCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHHHH
Q 029277 116 ----NFKSRAH-----N---TDYQGYMFPLLVQDQ--L-A--EWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRL 178 (196)
Q Consensus 116 ----~~~~~~~-----~---~~~~~~~f~~~~~~~--~-~--~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l 178 (196)
.|..+.. . .....++|.+..... . . ..+++|+.+++|++++++.+++. +..+.+++.+...+
T Consensus 73 ~~~~~y~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~~-~~~r~~~~~~~~~~ 151 (156)
T PRK00714 73 RDWLRYDLPKRLVRRSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQVV-PFKRDVYRRVLKEF 151 (156)
T ss_pred CCeEEecCcHHHhhccCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhch-hhhHHHHHHHHHHH
Confidence 2222210 0 011345666655321 1 1 11335789999999999998764 23356666555544
No 47
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.78 E-value=2.7e-18 Score=128.23 Aligned_cols=104 Identities=20% Similarity=0.256 Sum_probs=74.7
Q ss_pred CceEEEEEEEcCC--CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecc---eeeeeEEeeeCCC-----CceEEEEE
Q 029277 61 EDLEVLVISSQKG--KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEC---ELLGEWNFKSRAH-----NTDYQGYM 130 (196)
Q Consensus 61 ~~~~vLLv~~~~~--~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~---~~l~~~~~~~~~~-----~~~~~~~~ 130 (196)
++.++||+++..+ +.|.||||++++|||+.+||+||++||||+.+.... .+++.+.+..+.. ......++
T Consensus 11 ~~~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (132)
T cd04661 11 DDTLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVRNEGIVGAKVFF 90 (132)
T ss_pred cCcEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCcccccccCcccEEEE
Confidence 4558999998653 689999999999999999999999999999866521 1123333332211 12245678
Q ss_pred EEEeeccccccCCcCccceeEEEeHHHHHhhccch
Q 029277 131 FPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHW 165 (196)
Q Consensus 131 f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~ 165 (196)
|.+....+... ...|+.+++|++++++.+++...
T Consensus 91 f~~~~~~g~~~-~~~e~~~~~W~~~~el~~~l~~~ 124 (132)
T cd04661 91 FKARYMSGQFE-LSQNQVDFKWLAKEELQKYLNPP 124 (132)
T ss_pred EEEEEecCccc-cCCCcceeEecCHHHHHhhcCHH
Confidence 87776654332 34678999999999999987644
No 48
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=3.9e-18 Score=126.06 Aligned_cols=99 Identities=21% Similarity=0.094 Sum_probs=68.2
Q ss_pred EEEEEEEcCC-----CCEEec-CcccCCCCCHHHHHHHHHHHhhceeeeecce-eeeeEEeeeCCCCceEEEEEEEEeec
Q 029277 64 EVLVISSQKG-----KGMLFP-KGGWEIDESIQEAALRETIEEAGVTGIVECE-LLGEWNFKSRAHNTDYQGYMFPLLVQ 136 (196)
Q Consensus 64 ~vLLv~~~~~-----~~W~lP-gG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~-~l~~~~~~~~~~~~~~~~~~f~~~~~ 136 (196)
+|||++|... |.|++| ||+++.||++ +||+||++||||+.+..... .++.+.+... .....++|.+...
T Consensus 13 ~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 88 (127)
T cd04693 13 ELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAE---GFDDYYLFYADVE 88 (127)
T ss_pred eEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecC---CeEEEEEEEecCc
Confidence 7999887642 689998 8999999999 99999999999999765432 1344433221 2223334444333
Q ss_pred cccccCCcCccceeEEEeHHHHHhhccchh
Q 029277 137 DQLAEWPEKNVRSRKWMSVAEARKVCQHWW 166 (196)
Q Consensus 137 ~~~~~~~~~e~~~~~W~~~~el~~~~~~~~ 166 (196)
......+.+|+.+++|++++++.+++....
T Consensus 89 ~~~~~~~~~E~~~~~w~~~~el~~~~~~~~ 118 (127)
T cd04693 89 IGKLILQKEEVDEVKFVSKDEIDGLIGHGE 118 (127)
T ss_pred ccccccCHHHhhhEEEeCHHHHHHHHhcCC
Confidence 222233345779999999999998876553
No 49
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.77 E-value=7.2e-18 Score=130.47 Aligned_cols=125 Identities=13% Similarity=0.101 Sum_probs=85.4
Q ss_pred ccccccccCCCc-eEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-----CCEEec-CcccCCCCCHHHHHHHHHHH
Q 029277 27 TGRHLQRYQKGR-RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFP-KGGWEIDESIQEAALRETIE 99 (196)
Q Consensus 27 ~g~~~~~~~~~~-r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-----~~W~lP-gG~ve~gEs~~~Aa~REl~E 99 (196)
+.+...+..... +.++++++++.+ ++|||++|... |.|.+| ||++++||++++||+||++|
T Consensus 17 ~~r~~~~~~~~~~~~~v~v~i~~~~------------~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~E 84 (165)
T cd02885 17 AEKLEAHLKGTLLHRAFSVFLFNSK------------GRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLRE 84 (165)
T ss_pred cCHHHHhhcCCcceeEEEEEEEcCC------------CcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHH
Confidence 333333333344 777778788753 27999987642 679986 89999999999999999999
Q ss_pred hhceeeeecceee-eeEEeeeCCCC---ceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccch
Q 029277 100 EAGVTGIVECELL-GEWNFKSRAHN---TDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHW 165 (196)
Q Consensus 100 EtGl~~~~~~~~l-~~~~~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~ 165 (196)
|||+.+..... + +.+.|...... .+...++|.+...... ..+.+|+.+++|++++++.+++...
T Consensus 85 EtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~-~~~~~Ev~~~~w~~~~el~~~~~~~ 152 (165)
T cd02885 85 ELGITGDLLEL-VLPRFRYRAPDDGGLVEHEIDHVFFARADVTL-IPNPDEVSEYRWVSLEDLKELVAAA 152 (165)
T ss_pred HhCCCccchhh-ccceEEEEEEcCCCceeeEEEEEEEEEeCCCC-CCCccceeEEEEECHHHHHHHHHhC
Confidence 99999876665 3 44444332211 1234456666554332 2244677899999999999887654
No 50
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.77 E-value=4.1e-18 Score=130.86 Aligned_cols=110 Identities=17% Similarity=0.065 Sum_probs=75.4
Q ss_pred EEEEEEEEEeeccCCcccccCCceEEEEEEEcC-----CCCEEecCcccCCC-CCHHHHHHHHHHHhhceeeeecceeee
Q 029277 40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLFPKGGWEID-ESIQEAALRETIEEAGVTGIVECELLG 113 (196)
Q Consensus 40 ~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~-----~~~W~lPgG~ve~g-Es~~~Aa~REl~EEtGl~~~~~~~~l~ 113 (196)
.++..|++... + ++.+|||++|.. .|.|.+|||+++.| |++.+||+||++||||+.+..... ++
T Consensus 2 ~~av~v~l~~~---~------~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~-l~ 71 (157)
T cd03426 2 RAAVLVLLVER---E------GELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEV-LG 71 (157)
T ss_pred ceEEEEEEEeC---C------CceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEE-EE
Confidence 34555555543 1 346899999865 37899999999999 999999999999999999877655 55
Q ss_pred eEEeeeCCCCceEEEEEEEEeeccc-cccCCcCccceeEEEeHHHHHhh
Q 029277 114 EWNFKSRAHNTDYQGYMFPLLVQDQ-LAEWPEKNVRSRKWMSVAEARKV 161 (196)
Q Consensus 114 ~~~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~e~~~~~W~~~~el~~~ 161 (196)
.+....... ....+.|.+..... ......+|+.++.|++++++.+.
T Consensus 72 ~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 118 (157)
T cd03426 72 RLPPYYTRS--GFVVTPVVGLVPPPLPLVLNPDEVAEVFEVPLSFLLDP 118 (157)
T ss_pred ECCCccccC--CCEEEEEEEEECCCCCCCCCHHHhheeEEEcHHHHhCc
Confidence 443222211 12334455544432 22223347799999999999875
No 51
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.76 E-value=1.6e-17 Score=137.00 Aligned_cols=98 Identities=15% Similarity=0.135 Sum_probs=75.0
Q ss_pred EEEEEEEcC--CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeecccccc
Q 029277 64 EVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAE 141 (196)
Q Consensus 64 ~vLLv~~~~--~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 141 (196)
++||+++.+ .+.|.+|||++|+|||+++||.||++||||+++..... ++...+.++ ...++.|.+........
T Consensus 144 ~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~-~~s~~~~~p----~~lm~~f~a~~~~~~~~ 218 (256)
T PRK00241 144 EILLARHPRHRNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRY-VGSQPWPFP----HSLMLGFHADYDSGEIV 218 (256)
T ss_pred EEEEEEccCCCCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEE-EEeEeecCC----CeEEEEEEEEecCCccc
Confidence 899998754 37899999999999999999999999999999887776 665544332 23556777776543333
Q ss_pred CCcCccceeEEEeHHHHHhhccchh
Q 029277 142 WPEKNVRSRKWMSVAEARKVCQHWW 166 (196)
Q Consensus 142 ~~~~e~~~~~W~~~~el~~~~~~~~ 166 (196)
..++|+.+++|++++++..+.....
T Consensus 219 ~~~~Ei~~a~W~~~del~~lp~~~s 243 (256)
T PRK00241 219 FDPKEIADAQWFRYDELPLLPPSGT 243 (256)
T ss_pred CCcccEEEEEEECHHHCcccCCchH
Confidence 3345779999999999988765543
No 52
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=1e-17 Score=123.87 Aligned_cols=110 Identities=18% Similarity=0.180 Sum_probs=78.5
Q ss_pred EEEEEEEEeeccCCcccccCCceEEEEEEEcC-----CCCEEe-cCcccCCCCCHHHHHHHHHHHhhceeeeecceeeee
Q 029277 41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLF-PKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE 114 (196)
Q Consensus 41 ~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~-----~~~W~l-PgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~ 114 (196)
++.+++++.+ ++|||++|.. .|.|++ |||+++.||++.+||+||++||||+.+..... ++.
T Consensus 2 ~~~v~i~~~~------------~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~-~~~ 68 (126)
T cd04697 2 ATYIFVFNSE------------GKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTP-LGL 68 (126)
T ss_pred eEEEEEEcCC------------CeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEE-eeE
Confidence 4567777753 3799888753 267999 69999999999999999999999999875555 565
Q ss_pred EEeeeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchh
Q 029277 115 WNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWW 166 (196)
Q Consensus 115 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~ 166 (196)
+.+... ......++|.+..... .....+|..+++|++++++.+++....
T Consensus 69 ~~~~~~--~~~~~~~~f~~~~~~~-~~~~~~E~~~~~w~~~~el~~~~~~~~ 117 (126)
T cd04697 69 FYYDTD--GNRVWGKVFSCVYDGP-LKLQEEEVEEITWLSINEILQFKEGEN 117 (126)
T ss_pred EEecCC--CceEEEEEEEEEECCC-CCCCHhHhhheEEcCHHHHHHHhhcCc
Confidence 554322 2233345666654322 223345779999999999999876554
No 53
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=1.7e-17 Score=125.44 Aligned_cols=116 Identities=13% Similarity=0.065 Sum_probs=79.0
Q ss_pred eEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-----CCEEe-cCcccCCCCCHHHHHHHHHHHhhceeeeecce-e
Q 029277 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLF-PKGGWEIDESIQEAALRETIEEAGVTGIVECE-L 111 (196)
Q Consensus 39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-----~~W~l-PgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~-~ 111 (196)
+.++.+++++.. + ++.++||.+|... |.|.+ |||++++||++.+||+||++||||+.+..... +
T Consensus 2 h~~v~~~v~~~~---~------~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~ 72 (144)
T cd04692 2 HRTFHCWIITKD---E------GKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIP 72 (144)
T ss_pred ceEEEEEEEEcc---C------CCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEE
Confidence 457778888864 2 3468888887642 67999 59999999999999999999999998653221 1
Q ss_pred eeeEEeeeC-CC--CceEEEEEEEEeecc--ccccCCcCccceeEEEeHHHHHhhcc
Q 029277 112 LGEWNFKSR-AH--NTDYQGYMFPLLVQD--QLAEWPEKNVRSRKWMSVAEARKVCQ 163 (196)
Q Consensus 112 l~~~~~~~~-~~--~~~~~~~~f~~~~~~--~~~~~~~~e~~~~~W~~~~el~~~~~ 163 (196)
++.+.+... .. ......++|.+.... .....+++|+.+++|++++++.+++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~ 129 (144)
T cd04692 73 LGTFKIEYDHIGKLIDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAELLE 129 (144)
T ss_pred eeEEEEeccccCCCccceEEEEEEEeccCChhhcCCChhHhheEEEECHHHHHHHHH
Confidence 455544332 11 112344566655443 22223446789999999999988764
No 54
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=3.4e-17 Score=120.55 Aligned_cols=110 Identities=17% Similarity=0.112 Sum_probs=73.3
Q ss_pred EEEEEEEEEeeccCCcccccCCceEEEEEEEcC-----CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeee
Q 029277 40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE 114 (196)
Q Consensus 40 ~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~-----~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~ 114 (196)
+++++++++.+ +++||++|.+ .|.|.+|||+++.||++.+||.||++||||+.+..... ++.
T Consensus 2 ~~v~~vv~~~~------------~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~-~~~ 68 (129)
T cd04699 2 VAVAALIVKDV------------GRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLR-YPS 68 (129)
T ss_pred ceEEEEEECCC------------CcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeee-eeE
Confidence 35666666642 3799998864 35799999999999999999999999999999877665 332
Q ss_pred EEeeeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhcc
Q 029277 115 WNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQ 163 (196)
Q Consensus 115 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~ 163 (196)
..++..........++|.+..... ...+..|..+++|++++++..+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~w~~~~el~~~~~ 116 (129)
T cd04699 69 TVTHEDSGVYNVIYLVFVCEALSG-AVKLSDEHEEYAWVTLEELAILKA 116 (129)
T ss_pred EEEEcCCCEEEEEEEEEEeeecCC-cccCChhheEEEEecHHHhhhhhc
Confidence 222222111233334455433322 222344678999999999865543
No 55
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.74 E-value=3.2e-17 Score=140.45 Aligned_cols=123 Identities=17% Similarity=0.135 Sum_probs=84.8
Q ss_pred eEEEEEEEEEeeccCCcccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeE
Q 029277 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW 115 (196)
Q Consensus 39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~---~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~ 115 (196)
.+.|++|+++.+ +|||++|.. .|.|.+|||++++||++++||+||++||||+.+..... .+.+
T Consensus 203 ~vtv~avv~~~g-------------~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l-~~~~ 268 (340)
T PRK05379 203 FVTVDAVVVQSG-------------HVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVL-RGSI 268 (340)
T ss_pred ceEEEEEEEECC-------------EEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCccccccc-ceee
Confidence 467778877642 799999875 36799999999999999999999999999998765443 2221
Q ss_pred ----EeeeCC--CCceEEEEEEEEeecccc-c-cCCcCccceeEEEeHHHHHhh--ccchhHHHHHHHHH
Q 029277 116 ----NFKSRA--HNTDYQGYMFPLLVQDQL-A-EWPEKNVRSRKWMSVAEARKV--CQHWWMKEALDRLV 175 (196)
Q Consensus 116 ----~~~~~~--~~~~~~~~~f~~~~~~~~-~-~~~~~e~~~~~W~~~~el~~~--~~~~~~~~~l~~~~ 175 (196)
.+..+. .......++|.+...... . ....++..+++|++++++..+ ..+..+..+|..++
T Consensus 269 ~~~~~f~~p~r~~~~~~i~~~f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~~~~~~~~dh~~ii~~~~ 338 (340)
T PRK05379 269 RDQQVFDHPGRSLRGRTITHAFLFEFPAGELPRVKGGDDADKARWVPLAELLAMRDRMFEDHFQIITHFL 338 (340)
T ss_pred eeeEEEcCCCCCCCCcEEEEEEEEEecCCccCccCCCCceeeEEEEEHHHhhhhhhhhhhHHHHHHHHHh
Confidence 122221 123445566666554322 1 224457799999999999875 45566677776554
No 56
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.74 E-value=6.6e-17 Score=118.85 Aligned_cols=107 Identities=16% Similarity=0.160 Sum_probs=77.2
Q ss_pred EEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeecccc
Q 029277 64 EVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL 139 (196)
Q Consensus 64 ~vLLv~~~~~----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~ 139 (196)
++||.+|... |.|+||||++++||++.+||.||+.||||+.+..... ++.+.+..+. .....++|.+......
T Consensus 17 ~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~ 93 (129)
T PRK10776 17 EIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATL-FEKLEYEFPD--RHITLWFWLVESWEGE 93 (129)
T ss_pred EEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceE-EEEEEeeCCC--cEEEEEEEEEEEECCc
Confidence 7999998663 6899999999999999999999999999998766555 6655554432 2233445554433221
Q ss_pred ccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHH
Q 029277 140 AEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLV 175 (196)
Q Consensus 140 ~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 175 (196)
. ...|..+++|++++++......+.++.+++.+.
T Consensus 94 ~--~~~e~~~~~W~~~~~l~~~~~p~~~~~~~~~~~ 127 (129)
T PRK10776 94 P--WGKEGQPGRWVSQVALNADEFPPANEPIIAKLK 127 (129)
T ss_pred c--CCccCCccEEecHHHCccCCCCcccHHHHHHHH
Confidence 1 223567889999999998766677777776553
No 57
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.74 E-value=4.8e-17 Score=127.69 Aligned_cols=115 Identities=23% Similarity=0.272 Sum_probs=76.7
Q ss_pred eEEEEEEEcCC-----CCE-EecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeec
Q 029277 63 LEVLVISSQKG-----KGM-LFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQ 136 (196)
Q Consensus 63 ~~vLLv~~~~~-----~~W-~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~ 136 (196)
++|||.+|... |.| .+|||++++|||+.+||+||++||||+.+..... ++.+.+... ......++|.+...
T Consensus 49 g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~-~~~~~~~~~--~~~~~~~~f~~~~~ 125 (180)
T PRK15393 49 GKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAE-HGQFYFEDE--NCRVWGALFSCVSH 125 (180)
T ss_pred CeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCcccee-ceeEEecCC--CceEEEEEEEEEeC
Confidence 37998887643 334 5899999999999999999999999998655544 555543322 22222334544433
Q ss_pred cccccCCcCccceeEEEeHHHHHhhc--cchhHHHHHHHHHHHHhcc
Q 029277 137 DQLAEWPEKNVRSRKWMSVAEARKVC--QHWWMKEALDRLVMRLTSQ 181 (196)
Q Consensus 137 ~~~~~~~~~e~~~~~W~~~~el~~~~--~~~~~~~~l~~~~~~l~~~ 181 (196)
........|+.+++|++++++.++. ..+.....+..++.+.++.
T Consensus 126 -~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~l~~~l~~~~~~ 171 (180)
T PRK15393 126 -GPFALQEEEVSEVCWMTPEEITARCDEFTPDSLKALALWLTRNAKN 171 (180)
T ss_pred -CCCCCChHHeeEEEECCHHHHhhhhhhcCccHHHHHHHHHHhhccc
Confidence 2222234577999999999999873 3345556666666655443
No 58
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.72 E-value=4.8e-17 Score=117.38 Aligned_cols=112 Identities=23% Similarity=0.322 Sum_probs=82.0
Q ss_pred EEEEEEEEeeccCCcccccCCceEEEEEEEcC--CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEee
Q 029277 41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK 118 (196)
Q Consensus 41 ~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~--~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~ 118 (196)
++++++++.+ .++||+++.+ .+.|.+|||+++.||++.++|+||+.||+|+.+..... ++.+.+.
T Consensus 2 ~~~~i~~~~~------------~~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~-~~~~~~~ 68 (123)
T cd02883 2 AVGAVILDED------------GRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRL-LGVYEVE 68 (123)
T ss_pred ceEEEEECCC------------CCEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeE-EEEEEee
Confidence 4566776652 3799999888 58999999999999999999999999999999875444 5555554
Q ss_pred eCCCCceEEEEEEEEeecccccc-CCcCccceeEEEeHHHHHhhccch
Q 029277 119 SRAHNTDYQGYMFPLLVQDQLAE-WPEKNVRSRKWMSVAEARKVCQHW 165 (196)
Q Consensus 119 ~~~~~~~~~~~~f~~~~~~~~~~-~~~~e~~~~~W~~~~el~~~~~~~ 165 (196)
..........++|.+........ ..+.+..+.+|++++++.+.....
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~~l~~~~~~~ 116 (123)
T cd02883 69 SPDEGEHAVVFVFLARLVGGEPTLLPPDEISEVRWVTLDELPALALSP 116 (123)
T ss_pred ccCCCceEEEEEEEEEeCCCCcCCCCCCccceEEEEcHHHCccccccc
Confidence 44334456667777766543322 234566889999999998754433
No 59
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.72 E-value=7.9e-17 Score=126.84 Aligned_cols=116 Identities=16% Similarity=0.133 Sum_probs=78.8
Q ss_pred CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-----CCEEec-CcccCCCCCHHHHHHHHHHHhhceeeeecce
Q 029277 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFP-KGGWEIDESIQEAALRETIEEAGVTGIVECE 110 (196)
Q Consensus 37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-----~~W~lP-gG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~ 110 (196)
.++.++++++++.+ ++|||++|... |.|.+| ||++++||++++||+||++||||+.+.....
T Consensus 32 ~~h~av~v~i~~~~------------g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~ 99 (184)
T PRK03759 32 PLHLAFSCYLFDAD------------GRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLEL 99 (184)
T ss_pred CeeeEEEEEEEcCC------------CeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCcccccc
Confidence 45677777788753 27999987432 567765 7999999999999999999999999864332
Q ss_pred eeeeEEeeeCC--CC-ceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccch
Q 029277 111 LLGEWNFKSRA--HN-TDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHW 165 (196)
Q Consensus 111 ~l~~~~~~~~~--~~-~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~ 165 (196)
.++.+.+.... .. .....++|.+.... ......+|+.+++|++++++.+++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~vf~~~~~~-~~~~~~~Ev~~~~W~~~~el~~~i~~~ 156 (184)
T PRK03759 100 VLPDFRYRATDPNGIVENEVCPVFAARVTS-ALQPNPDEVMDYQWVDPADLLRAVDAT 156 (184)
T ss_pred ccceEEEEEecCCCceeeEEEEEEEEEECC-CCCCChhHeeeEEEECHHHHHHHHHhC
Confidence 24445443221 11 12244567666543 222233577999999999999886544
No 60
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.72 E-value=1e-16 Score=118.36 Aligned_cols=57 Identities=30% Similarity=0.399 Sum_probs=49.2
Q ss_pred EEEEEEEEeeccCCcccccCCceEEEEEEE-------cCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeee
Q 029277 41 VVGCIPYRYKCVKQSLDINEEDLEVLVISS-------QKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGI 106 (196)
Q Consensus 41 ~vgaii~~~~~~~~g~~~~~~~~~vLLv~~-------~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~ 106 (196)
++|+|+++.+ + +..+|||+++ +..+.|++|||+++.||++.+||+||++||||+.+.
T Consensus 2 ~~g~v~~~~~---~------~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~ 65 (126)
T cd04662 2 SAGILLYRFR---D------GRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD 65 (126)
T ss_pred eEEEEEEEEc---C------CcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce
Confidence 6889999875 2 4568999985 334789999999999999999999999999999876
No 61
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.71 E-value=3e-16 Score=114.06 Aligned_cols=106 Identities=17% Similarity=0.096 Sum_probs=78.7
Q ss_pred eEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeeccc
Q 029277 63 LEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQ 138 (196)
Q Consensus 63 ~~vLLv~~~~~----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~ 138 (196)
+++||++|.+. |.|.||||+++.+|++.++|.||+.||||+.+..... ++.+.+..+ ......++|.+.....
T Consensus 13 ~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~ 89 (124)
T cd03425 13 GRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGEL-LATVEHDYP--DKRVTLHVFLVELWSG 89 (124)
T ss_pred CEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccce-EEEEEeeCC--CCeEEEEEEEEeeeCC
Confidence 37999988643 6899999999999999999999999999999877665 666655443 2334455666654432
Q ss_pred cccCCcCccceeEEEeHHHHHhhccchhHHHHHHH
Q 029277 139 LAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDR 173 (196)
Q Consensus 139 ~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~ 173 (196)
.. ...+...+.|++++++..+...+.++.+++.
T Consensus 90 ~~--~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~ 122 (124)
T cd03425 90 EP--QLLEHQELRWVPPEELDDLDFPPADVPIVAA 122 (124)
T ss_pred Cc--ccccCceEEEeeHHHcccCCCCcccHHHHHh
Confidence 21 2345688999999999988777766666653
No 62
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.71 E-value=3.4e-16 Score=115.20 Aligned_cols=105 Identities=15% Similarity=0.015 Sum_probs=75.6
Q ss_pred EEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeecccc
Q 029277 64 EVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL 139 (196)
Q Consensus 64 ~vLLv~~~~~----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~ 139 (196)
++||.+|.+. |.|+||||+++.||++.+|+.||+.||||+.+..... ++.+.+.++ ......++|.+......
T Consensus 17 ~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~-~~~~~h~~~--~~~~~~~~~~~~~~~~~ 93 (128)
T TIGR00586 17 EIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEF-EKLEYEFYP--RHITLWFWLLERWEGGP 93 (128)
T ss_pred EEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeE-EEEEEEECC--CcEEEEEEEEEEEcCCC
Confidence 7998888654 6899999999999999999999999999999877655 555554433 22334455555544322
Q ss_pred ccCCcCccceeEEEeHHHHHhhccchhHHHHHHH
Q 029277 140 AEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDR 173 (196)
Q Consensus 140 ~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~ 173 (196)
. ...+..++.|++++++.++.....++.+++.
T Consensus 94 ~--~~~~~~~~~W~~~~~l~~~~~p~~~~~~~~~ 125 (128)
T TIGR00586 94 P--GKEGQPEEWWVLVGLLADDFFPAANPVIIKL 125 (128)
T ss_pred c--CcccccccEEeCHHHCCccCCCCCCHHHHHH
Confidence 1 1234567899999999988766666666654
No 63
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.71 E-value=2e-16 Score=121.63 Aligned_cols=114 Identities=14% Similarity=0.081 Sum_probs=78.9
Q ss_pred CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-----CCEEec-CcccCCCCCHHHHHHHHHHHhhceeeeecce
Q 029277 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFP-KGGWEIDESIQEAALRETIEEAGVTGIVECE 110 (196)
Q Consensus 37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-----~~W~lP-gG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~ 110 (196)
.++.++++++++.+ ++|||.+|... |.|++| ||+++.|| .+||+||++||||+.+.....
T Consensus 25 ~~h~~v~v~v~~~~------------g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l 90 (158)
T TIGR02150 25 PLHRAFSVFLFNEE------------GQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPL 90 (158)
T ss_pred CeEEEEEEEEEcCC------------CeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccce
Confidence 45667777777753 37999887653 789997 79999999 499999999999999766531
Q ss_pred -eeeeEEeeeCCC-CceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccch
Q 029277 111 -LLGEWNFKSRAH-NTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHW 165 (196)
Q Consensus 111 -~l~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~ 165 (196)
.++.+.+..... ......++|.+.... ......+|+.++.|++++++.+++..+
T Consensus 91 ~~~~~~~~~~~~~~g~~~~~~~f~~~~~~-~~~~~~~Ev~~~~W~~~~el~~~~~~~ 146 (158)
T TIGR02150 91 TVLPRFSYRARDAWGEHELCPVFFARAPV-PLNPNPEEVAEYRWVSLEELKEILKAP 146 (158)
T ss_pred EEcceEEEEEecCCCcEEEEEEEEEecCC-cccCChhHeeeEEEeCHHHHHHHHhcC
Confidence 134334433221 223445666665543 222234588999999999999887655
No 64
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=2e-16 Score=118.40 Aligned_cols=108 Identities=20% Similarity=0.238 Sum_probs=75.5
Q ss_pred EEEEEEEEeeccCCcccccCCceEEEEEEEcCC-----CCEEecCcccCCCCCHHHHHHHHHHHhhceee-eecceeeee
Q 029277 41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFPKGGWEIDESIQEAALRETIEEAGVTG-IVECELLGE 114 (196)
Q Consensus 41 ~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~-~~~~~~l~~ 114 (196)
++++++++.+ ++|||+++.+. +.|.+|||+++.||++.+||.||++||||+.+ ..... +..
T Consensus 2 ~~~~~i~~~~------------g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~-~~~ 68 (133)
T cd04685 2 AARVVLLDPD------------DRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPP-VWR 68 (133)
T ss_pred eEEEEEEcCC------------CeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccce-EEE
Confidence 5778888764 27999987642 57999999999999999999999999999998 55444 433
Q ss_pred EE--eeeCCCCceEEEEEEEEeeccccc---cCCc---CccceeEEEeHHHHHhh
Q 029277 115 WN--FKSRAHNTDYQGYMFPLLVQDQLA---EWPE---KNVRSRKWMSVAEARKV 161 (196)
Q Consensus 115 ~~--~~~~~~~~~~~~~~f~~~~~~~~~---~~~~---~e~~~~~W~~~~el~~~ 161 (196)
.. +...........++|.+....... .... .+...++|++++++...
T Consensus 69 ~~~~f~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 69 RDAAFTFLGVDGRQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred EEEEEEecCccceeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence 22 333333334456677777654211 1111 23468999999999876
No 65
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.70 E-value=1.8e-16 Score=116.35 Aligned_cols=91 Identities=20% Similarity=0.257 Sum_probs=71.4
Q ss_pred EEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeeccccccCC
Q 029277 64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWP 143 (196)
Q Consensus 64 ~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 143 (196)
++||++++ .+.|.+|||+++.||++++||.||++||||+.+..... ++.+..... .......+|.+.........+
T Consensus 12 ~vLl~~~~-~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~-l~~~~~~~~--~~~~~~~~y~a~~~~~~~~~~ 87 (118)
T cd04665 12 GLLLVRHK-DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTL-VGYYQVDLF--ESGFETLVYPAVSAQLEEKAS 87 (118)
T ss_pred EEEEEEeC-CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEE-EEEEEecCC--CCcEEEEEEEEEEEecccccc
Confidence 79999886 46799999999999999999999999999999977766 777654332 233455677777665544456
Q ss_pred cCccceeEEEeHHHH
Q 029277 144 EKNVRSRKWMSVAEA 158 (196)
Q Consensus 144 ~~e~~~~~W~~~~el 158 (196)
..|+....|++.+..
T Consensus 88 ~~E~~~~~~~~~~~~ 102 (118)
T cd04665 88 YLETDGPVLFKNEPE 102 (118)
T ss_pred cccccCcEEeccCCc
Confidence 778899999997754
No 66
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=3e-16 Score=118.87 Aligned_cols=101 Identities=21% Similarity=0.205 Sum_probs=67.9
Q ss_pred EEEEEEEcC-----CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeec----ceeeeeEEeeeCC----C--CceEEE
Q 029277 64 EVLVISSQK-----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVE----CELLGEWNFKSRA----H--NTDYQG 128 (196)
Q Consensus 64 ~vLLv~~~~-----~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~----~~~l~~~~~~~~~----~--~~~~~~ 128 (196)
++||++|.. +|.|.+|||++++||++.+||+||+.||+|+.+... .. ++.+.+..+. . ...+..
T Consensus 14 ~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~ 92 (143)
T cd04694 14 KLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQV-LGLWESVYPPLLSRGLPKRHHIV 92 (143)
T ss_pred EEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeE-EeeeccccccccCCCcccceeEE
Confidence 799999864 267999999999999999999999999999997653 33 5554433221 1 112222
Q ss_pred EEEEEeeccc-----cc-cCCcCccceeEEEeHHHHHhhccch
Q 029277 129 YMFPLLVQDQ-----LA-EWPEKNVRSRKWMSVAEARKVCQHW 165 (196)
Q Consensus 129 ~~f~~~~~~~-----~~-~~~~~e~~~~~W~~~~el~~~~~~~ 165 (196)
.+|.+..... .. ....+|+.+++|++++++.+++...
T Consensus 93 ~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~~~~~ 135 (143)
T cd04694 93 VYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAVVSAE 135 (143)
T ss_pred EEEEEEeccccccccccccCChhhccceEeeCHHHHHHHHHhh
Confidence 2332222211 11 1223578999999999999887543
No 67
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.69 E-value=4.3e-16 Score=122.75 Aligned_cols=103 Identities=20% Similarity=0.060 Sum_probs=74.0
Q ss_pred EEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeecccc
Q 029277 64 EVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL 139 (196)
Q Consensus 64 ~vLLv~~~~~----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~ 139 (196)
++||+++.+. ..|+||||.+|+||++++||+||++||||+.+..... ++.+.... .......++|.+......
T Consensus 60 ~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~-l~~~~~~~--~~~~~~~~~f~a~~~~~~ 136 (185)
T PRK11762 60 TLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTF-LKELSLAP--SYFSSKMNIVLAEDLYPE 136 (185)
T ss_pred EEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEE-EEEEecCC--CccCcEEEEEEEEccccc
Confidence 7999998653 4599999999999999999999999999999988777 76654322 122234455555432221
Q ss_pred -ccCCcCccceeEEEeHHHHHhhccchhHHH
Q 029277 140 -AEWPEKNVRSRKWMSVAEARKVCQHWWMKE 169 (196)
Q Consensus 140 -~~~~~~e~~~~~W~~~~el~~~~~~~~~~~ 169 (196)
....+.|..+..|++++++.+++..+.+.+
T Consensus 137 ~~~~~e~E~i~~~~~~~~e~~~~~~~g~i~d 167 (185)
T PRK11762 137 RLEGDEPEPLEVVRWPLADLDELLARPDFSE 167 (185)
T ss_pred cCCCCCCceeEEEEEcHHHHHHHHHcCCCCc
Confidence 122234567899999999999987765543
No 68
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.67 E-value=4.9e-16 Score=122.48 Aligned_cols=118 Identities=19% Similarity=0.086 Sum_probs=83.3
Q ss_pred eEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC---------CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecc
Q 029277 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---------KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEC 109 (196)
Q Consensus 39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~---------~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~ 109 (196)
+.+|++|+++.+ +++|||+++.+. ..|+||+|++|.||++++||+||++||||+.+....
T Consensus 44 ~~~v~vl~~~~~-----------~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~ 112 (185)
T TIGR00052 44 GNAAAVLLYDPK-----------KDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLR 112 (185)
T ss_pred CCeEEEEEEECC-----------CCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceE
Confidence 346666767542 347999986542 358999999999999999999999999999997766
Q ss_pred eeeeeEEeeeCCCCceEEEEEEEEeecccc----ccCCcCccceeEEEeHHHHHhhccchhHHHH
Q 029277 110 ELLGEWNFKSRAHNTDYQGYMFPLLVQDQL----AEWPEKNVRSRKWMSVAEARKVCQHWWMKEA 170 (196)
Q Consensus 110 ~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~----~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~ 170 (196)
. ++.+. ..........++|.+...... ....++|..+..|++++++.+++..+.+.+.
T Consensus 113 ~-~~~~~--~~~g~~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G~i~d~ 174 (185)
T TIGR00052 113 K-LLSFY--SSPGGVTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEGKIDNG 174 (185)
T ss_pred E-EEEEE--cCCCCCcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHcCCCCCH
Confidence 5 55432 222333456677877754321 1112345678999999999999877755443
No 69
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.67 E-value=1.6e-15 Score=121.04 Aligned_cols=117 Identities=18% Similarity=0.092 Sum_probs=82.0
Q ss_pred eEEEEEEEEEeeccCCcccccCCceEEEEEEEcCCC---------CEEecCcccCCCCCHHHHHHHHHHHhhceeeeecc
Q 029277 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGK---------GMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEC 109 (196)
Q Consensus 39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~---------~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~ 109 (196)
..+|++|++..+ +++|||+++.+.+ .|++|+|.+|+||++++||+||+.||||+.+....
T Consensus 49 ~~~V~il~~~~~-----------~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~ 117 (202)
T PRK10729 49 GHAAVLLPFDPV-----------RDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTK 117 (202)
T ss_pred CCeEEEEEEECC-----------CCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEE
Confidence 346667777642 2379999876542 38999999999999999999999999999987766
Q ss_pred eeeeeEEeeeCCCCceEEEEEEEEeecc----cc-ccCCcCccceeEEEeHHHHHhhccchhHHH
Q 029277 110 ELLGEWNFKSRAHNTDYQGYMFPLLVQD----QL-AEWPEKNVRSRKWMSVAEARKVCQHWWMKE 169 (196)
Q Consensus 110 ~~l~~~~~~~~~~~~~~~~~~f~~~~~~----~~-~~~~~~e~~~~~W~~~~el~~~~~~~~~~~ 169 (196)
. ++.+. ...+......++|.+.... .. ....+.|..++.|++++++.+++..+.+.+
T Consensus 118 ~-l~~~~--~spg~~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~G~i~d 179 (202)
T PRK10729 118 P-VLSYL--ASPGGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGKIDN 179 (202)
T ss_pred E-EEEEE--cCCCcCceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHcCCCCc
Confidence 5 54432 2223334556777776422 11 112235567899999999999977665443
No 70
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.66 E-value=4.7e-15 Score=113.56 Aligned_cols=95 Identities=22% Similarity=0.303 Sum_probs=72.4
Q ss_pred EEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeeccccccCC
Q 029277 64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWP 143 (196)
Q Consensus 64 ~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 143 (196)
++||+++.+ ..|++|||++|+||++++||+||++||||+.+..... ++.+.... .......++|.+...... +
T Consensus 36 ~~LL~~~~~-~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~-lg~~~~~~--~~~~~~~~vf~A~~~~~~---~ 108 (156)
T TIGR02705 36 QWLLTEHKR-RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHY-IGQYEVEG--ESTDFVKDVYFAEVSALE---S 108 (156)
T ss_pred EEEEEEEcC-CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEE-EEEEEecC--CCcEEEEEEEEEEEeccc---c
Confidence 699998765 4599999999999999999999999999999988887 88765433 224455667777766332 2
Q ss_pred cCccceeE-EEeHHHHHhhccch
Q 029277 144 EKNVRSRK-WMSVAEARKVCQHW 165 (196)
Q Consensus 144 ~~e~~~~~-W~~~~el~~~~~~~ 165 (196)
.++..+.. +++++++.+++..+
T Consensus 109 ~~e~~E~~~~~~~~~~~~~~~~g 131 (156)
T TIGR02705 109 KDDYLETKGPVLLQEIPDIIKAD 131 (156)
T ss_pred CCCceeeEeEEEHHHHHHHHhcC
Confidence 24556666 79999998776444
No 71
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.65 E-value=3.2e-15 Score=117.54 Aligned_cols=112 Identities=14% Similarity=0.067 Sum_probs=72.4
Q ss_pred ceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecc----------------eeeeeEEeeeCCCC--
Q 029277 62 DLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEC----------------ELLGEWNFKSRAHN-- 123 (196)
Q Consensus 62 ~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~----------------~~l~~~~~~~~~~~-- 123 (196)
..++|++++...+.|.||||++++||++.+||.||+.||||+.+.... . +.+|.....+..
T Consensus 48 ~l~vLl~~r~~~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l~~~~~~~~~l~~l~~~~~~~~-~~vy~~~~~dpr~t 126 (186)
T cd03670 48 ILQFVAIKRPDSGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKSDEEKEEIKKLVELFSKDG-VEVYKGYVDDPRNT 126 (186)
T ss_pred eeEEEEEEeCCCCcCcCCeeeccCCCCHHHHHHHHHHHHHcccccccchhhhhhcchhhhhcccc-cEEEeccccCCCCC
Confidence 578999999888999999999999999999999999999976532210 1 223322222211
Q ss_pred --ceEEEEEEEEeecc-----ccccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHH
Q 029277 124 --TDYQGYMFPLLVQD-----QLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVM 176 (196)
Q Consensus 124 --~~~~~~~f~~~~~~-----~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~ 176 (196)
....+..|.+.... .......++..+++|+++++++.+.. .+.++|+.+.+
T Consensus 127 d~~w~~Tva~~f~~~~~~~~~~~~~~a~dda~~a~W~~v~~l~~L~~--dH~~Il~~a~~ 184 (186)
T cd03670 127 DNAWMETVAVNFHDEDGNDVENLPLEAGDDAGSVRWQDIDSKLPLYA--NHSQFLKKVAE 184 (186)
T ss_pred CcceEEEEEEEEEecCcccccccccCCCCchheeEEEEccccccccc--CHHHHHHHHHH
Confidence 12233333333221 11122335679999999999886543 45677776554
No 72
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.65 E-value=1.4e-15 Score=112.52 Aligned_cols=99 Identities=22% Similarity=0.206 Sum_probs=59.9
Q ss_pred ceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeecc----
Q 029277 62 DLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQD---- 137 (196)
Q Consensus 62 ~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~---- 137 (196)
..++|+.+... +.|.||||++++||++.+||.||++||||+.+.......+.+..... ...+..+++.+....
T Consensus 13 ~~~ll~~r~~~-~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~ 89 (126)
T cd04663 13 VLELLVFEHPL-AGFQIVKGTVEPGETPEAAALRELQEESGLPSFLSDYILHVWERRFY--QKRHFWHLTLCEVDQDLPD 89 (126)
T ss_pred eEEEEEEEcCC-CcEECCCccCCCCCCHHHHHHHHHHHHHCCeeeeeeecceeeeCCEe--eccEEEEEEEEEecCCCcc
Confidence 35777776655 56999999999999999999999999999997433221232221110 111223333333321
Q ss_pred c---cccCCcCccceeEEEeHHHHHhhcc
Q 029277 138 Q---LAEWPEKNVRSRKWMSVAEARKVCQ 163 (196)
Q Consensus 138 ~---~~~~~~~e~~~~~W~~~~el~~~~~ 163 (196)
. .....+.+..++.|++++++.....
T Consensus 90 ~~~~~~~~~E~~~i~~~Wv~l~~~~~~~~ 118 (126)
T cd04663 90 SWVHFVQDDGGHEFRFFWVDLASCLDEFL 118 (126)
T ss_pred cccCcccCCCCceEEEEEEccccccccce
Confidence 1 1111233335666999999865533
No 73
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.64 E-value=3.5e-15 Score=118.05 Aligned_cols=114 Identities=22% Similarity=0.206 Sum_probs=77.2
Q ss_pred CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC-----CCCEEecCcccCCC-CCHHHHHHHHHHHhhceeeeecce
Q 029277 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLFPKGGWEID-ESIQEAALRETIEEAGVTGIVECE 110 (196)
Q Consensus 37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~-----~~~W~lPgG~ve~g-Es~~~Aa~REl~EEtGl~~~~~~~ 110 (196)
..+.+|++|++..+ ++.++||++|.. .|.|+||||++|++ |++++||+||++||||+.......
T Consensus 28 ~~~~aavvl~l~~~----------~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~ 97 (190)
T PRK10707 28 NQRQAAVLIPIVRR----------PQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEV 97 (190)
T ss_pred cCCCeEEEEEEEEC----------CCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEE
Confidence 45567777777643 234788888543 27799999999985 789999999999999999887777
Q ss_pred eeeeEEeeeCCCCceEEEEEEEEeeccccccCC-cCccceeEEEeHHHHHhhcc
Q 029277 111 LLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWP-EKNVRSRKWMSVAEARKVCQ 163 (196)
Q Consensus 111 ~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-~~e~~~~~W~~~~el~~~~~ 163 (196)
++.+....... + .....|.+.........+ .+|..++.|++++++.++..
T Consensus 98 -lg~l~~~~~~~-~-~~~~~~v~~~~~~~~~~~d~~Ev~~v~~vpl~e~~~~~~ 148 (190)
T PRK10707 98 -IGVLPPVDSST-G-YQVTPVVGIIPPDLPYRANEDEVAAVFEMPLAEALHLGR 148 (190)
T ss_pred -EEEeeeeeccC-C-cEEEEEEEEECCCCCCCCChhhhheEEEEeHHHHhCccc
Confidence 77655322222 2 222333333332222223 35778999999999987753
No 74
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.63 E-value=7.2e-15 Score=115.15 Aligned_cols=123 Identities=15% Similarity=0.114 Sum_probs=80.7
Q ss_pred CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-----CCE-EecCcccCCCCCHHHHHHHHHHHhhceeeeecce
Q 029277 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGM-LFPKGGWEIDESIQEAALRETIEEAGVTGIVECE 110 (196)
Q Consensus 37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-----~~W-~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~ 110 (196)
-++.++...+|..+.. +..++++.+|... |.| .+|+|+++.||++.+||+||++||||+.+.....
T Consensus 30 ~~h~~v~~~~~~~~~~--------~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~ 101 (180)
T cd03676 30 LVTYGVHLNGYVRDED--------GGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQ 101 (180)
T ss_pred ceEEEEEEEEEEEcCC--------CCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhh
Confidence 3445555555655311 1357887776543 789 5899999999999999999999999999765321
Q ss_pred --eeeeEEeeeC-CCC--ceEEEEEEEEeecccc-ccCCcCccceeEEEeHHHHHhhccchhH
Q 029277 111 --LLGEWNFKSR-AHN--TDYQGYMFPLLVQDQL-AEWPEKNVRSRKWMSVAEARKVCQHWWM 167 (196)
Q Consensus 111 --~l~~~~~~~~-~~~--~~~~~~~f~~~~~~~~-~~~~~~e~~~~~W~~~~el~~~~~~~~~ 167 (196)
+++.+.+... ... .....++|.+...... ....++|+.++.|++++|+.+++....+
T Consensus 102 l~~~g~~~~~~~~~~~~~~~e~~~~f~~~~~~~~~~~~~~~Ev~~~~~~~~~el~~~l~~g~~ 164 (180)
T cd03676 102 LKPVGVVSYLREGEAGGLQPEVEYVYDLELPPDFIPAPQDGEVESFRLLTIDEVLRALKEGEF 164 (180)
T ss_pred ceeccEEEEEEEcCCCcEeeeEEEEEEEEcCCCCeeCCCCCcEeEEEEECHHHHHHHHHcCCC
Confidence 1444443332 111 2344566766553322 2234467899999999999998766544
No 75
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.60 E-value=2.2e-14 Score=113.62 Aligned_cols=117 Identities=15% Similarity=0.017 Sum_probs=81.2
Q ss_pred eEEEEEEEEEeeccCCcccccCCceEEEEEEEcCCC----------CEEecCcccCCCCCHHHHHHHHHHHhhceeeeec
Q 029277 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGK----------GMLFPKGGWEIDESIQEAALRETIEEAGVTGIVE 108 (196)
Q Consensus 39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~----------~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~ 108 (196)
+.+|++|+++.+ +++++|+++.+.+ .|++|+|.+|.| ++++||+||+.||||+.+...
T Consensus 45 ~~~v~Vl~~~~~-----------~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~ 112 (191)
T PRK15009 45 GNGATILLYNAK-----------KKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEV 112 (191)
T ss_pred CCEEEEEEEECC-----------CCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceE
Confidence 446777777642 3379999976653 289999999966 699999999999999998776
Q ss_pred ceeeeeEEeeeCCCCceEEEEEEEEeeccc--cc--cCCcCccceeEEEeHHHHHhhccchhHHHH
Q 029277 109 CELLGEWNFKSRAHNTDYQGYMFPLLVQDQ--LA--EWPEKNVRSRKWMSVAEARKVCQHWWMKEA 170 (196)
Q Consensus 109 ~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~--~~--~~~~~e~~~~~W~~~~el~~~~~~~~~~~~ 170 (196)
.. ++.+ +..+ +......++|.+..... .. ...++|..++.|++++++.+++..+.+.+.
T Consensus 113 ~~-l~~~-~~sp-G~s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~G~i~da 175 (191)
T PRK15009 113 RK-LFEL-YMSP-GGVTELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTGEIRDG 175 (191)
T ss_pred EE-eeEE-EcCC-cccCcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHcCCCCcH
Confidence 66 5543 2222 23344566777765321 11 112456689999999999999876655433
No 76
>PRK08999 hypothetical protein; Provisional
Probab=99.60 E-value=2.4e-14 Score=121.15 Aligned_cols=106 Identities=16% Similarity=0.077 Sum_probs=77.8
Q ss_pred EEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeecccc
Q 029277 64 EVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL 139 (196)
Q Consensus 64 ~vLLv~~~~~----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~ 139 (196)
++||.+|..+ |.|+||||+++.||++.+||.||++||||+.+..... +..+.+.++. .....++|.+......
T Consensus 18 ~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~-l~~~~h~~~~--~~~~i~~y~~~~~~~~ 94 (312)
T PRK08999 18 RILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARP-LITVRHDYPD--KRVRLDVRRVTAWQGE 94 (312)
T ss_pred eEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceeccee-EEEEEEEcCC--CeEEEEEEEEEEecCc
Confidence 7999988653 6899999999999999999999999999999876655 5555554432 2334456655433221
Q ss_pred ccCCcCccceeEEEeHHHHHhhccchhHHHHHHHH
Q 029277 140 AEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRL 174 (196)
Q Consensus 140 ~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~ 174 (196)
....+..+++|++++++.++...+.++.+++.+
T Consensus 95 --~~~~e~~~~~Wv~~~el~~~~~~~~~~~i~~~l 127 (312)
T PRK08999 95 --PHGREGQPLAWVAPDELAVYPFPPANQPIVRAL 127 (312)
T ss_pred --ccCccCCccEEecHHHcccCCCCcchHHHHHHh
Confidence 123456788999999999887777777776655
No 77
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.58 E-value=2.2e-14 Score=105.24 Aligned_cols=104 Identities=19% Similarity=0.142 Sum_probs=63.4
Q ss_pred ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeee
Q 029277 38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE 114 (196)
Q Consensus 38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~---~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~ 114 (196)
+..++++|+...+ .+||+++.. .+.|.||||+++.||++.+||.||+.||||+.+.... +..
T Consensus 3 p~~~av~vl~~~~-------------~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~~~--l~~ 67 (118)
T cd04674 3 PLPVVVALLPVDD-------------GLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVDPAD--IRL 67 (118)
T ss_pred CcEEEEEEEEECC-------------CEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcccccE--EEE
Confidence 4556666655532 367777653 2789999999999999999999999999999976432 222
Q ss_pred EEeeeCCCCceEEEEEEEEeecccc--ccCCcCccceeEEEeHHH
Q 029277 115 WNFKSRAHNTDYQGYMFPLLVQDQL--AEWPEKNVRSRKWMSVAE 157 (196)
Q Consensus 115 ~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~e~~~~~W~~~~e 157 (196)
+..... ......++.|........ ...+..|..++.|+....
T Consensus 68 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~ 111 (118)
T cd04674 68 FDVRSA-PDGTLLVFGLLPERRAADLPPFEPTDETTERAVVTAPS 111 (118)
T ss_pred EEEEec-CCCeEEEEEEEeccccccCCCCCCCcceeeEEEccCCc
Confidence 222111 223334444444433322 123345556666665443
No 78
>PLN03143 nudix hydrolase; Provisional
Probab=99.49 E-value=9.6e-13 Score=109.99 Aligned_cols=123 Identities=13% Similarity=0.042 Sum_probs=72.3
Q ss_pred ceEEEEEEEcCC--C--CEEecCcccCC-CCCHHHHHHHHHHHhhceeeeecce-eeee-------EEeeeCCCCceEEE
Q 029277 62 DLEVLVISSQKG--K--GMLFPKGGWEI-DESIQEAALRETIEEAGVTGIVECE-LLGE-------WNFKSRAHNTDYQG 128 (196)
Q Consensus 62 ~~~vLLv~~~~~--~--~W~lPgG~ve~-gEs~~~Aa~REl~EEtGl~~~~~~~-~l~~-------~~~~~~~~~~~~~~ 128 (196)
+.+++|+++.+. + .|+||+|.+|. +|++.+||+||++||||+.+..... .+.. ..+....+......
T Consensus 142 e~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~~v~pspG~~dE~i 221 (291)
T PLN03143 142 ETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGCRMFPSPGGCDEEI 221 (291)
T ss_pred CEEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccccCcCceEEecCCccCCeE
Confidence 445889987663 2 58999999998 5899999999999999998643221 0210 01111112222233
Q ss_pred EEEEEeec--cc--------cccC-CcCccceeEEEeHHHHHhhccchhHHHHHHHHHHHHhccccC
Q 029277 129 YMFPLLVQ--DQ--------LAEW-PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLH 184 (196)
Q Consensus 129 ~~f~~~~~--~~--------~~~~-~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~~~~~~ 184 (196)
++|.+... .. .... .+.|..++.|++++++..+..+.....++..+......|-++
T Consensus 222 ~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~aD~ktl~al~l~~~~k~~g~~~ 288 (291)
T PLN03143 222 SLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMTADAKVLMAIALYEMAKREGLLP 288 (291)
T ss_pred EEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHHHhHHHHHHHHHHHHHHhcCCCC
Confidence 45543322 10 0111 234568899999999999886554443443333333444443
No 79
>PLN02709 nudix hydrolase
Probab=99.47 E-value=5.2e-13 Score=107.42 Aligned_cols=117 Identities=12% Similarity=0.030 Sum_probs=76.2
Q ss_pred CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-----CCEEecCcccCCC-CCHHHHHHHHHHHhhceeeeecce
Q 029277 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFPKGGWEID-ESIQEAALRETIEEAGVTGIVECE 110 (196)
Q Consensus 37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-----~~W~lPgG~ve~g-Es~~~Aa~REl~EEtGl~~~~~~~ 110 (196)
.+|.+|..|++.....++. ++.++||++|... |.|.||||++|++ +++.+||+||+.||+|+.......
T Consensus 30 ~~r~AAVLv~l~~~~~~~~-----~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~v 104 (222)
T PLN02709 30 PAKSSAVLVCLYQEQREDK-----NELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTI 104 (222)
T ss_pred CCCccEEEEEEeeccCCCC-----CceEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEE
Confidence 3455665555554210000 3458999998653 8899999999996 579999999999999999876666
Q ss_pred eeeeEEeeeCCCCceEEEEEEEEeecc--cccc-CCcCccceeEEEeHHHHHhh
Q 029277 111 LLGEWNFKSRAHNTDYQGYMFPLLVQD--QLAE-WPEKNVRSRKWMSVAEARKV 161 (196)
Q Consensus 111 ~l~~~~~~~~~~~~~~~~~~f~~~~~~--~~~~-~~~~e~~~~~W~~~~el~~~ 161 (196)
++........ .+ ..+.-|.+.+.. .... ...+|+.++.|++++.+.+.
T Consensus 105 -lg~L~~~~t~-sg-~~V~P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~ll~~ 155 (222)
T PLN02709 105 -ISVLEPFVNK-KG-MSVAPVIGFLHDKKAFKPLPNPAEVEEIFDVPLEMFLKD 155 (222)
T ss_pred -eeecCCeECC-CC-CEEEEEEEEecCCCCccccCChhhhheeEEecHHHHhCC
Confidence 6665433222 12 234455544432 1121 23358899999999998643
No 80
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.46 E-value=1.4e-12 Score=96.23 Aligned_cols=102 Identities=24% Similarity=0.204 Sum_probs=66.0
Q ss_pred eEEEEEEEcCCC-CEEecCcccCCCCCHHH-HHHHHHHHhhceeeee--cceeeeeEEeeeCCCC---ceEEEEEEEEee
Q 029277 63 LEVLVISSQKGK-GMLFPKGGWEIDESIQE-AALRETIEEAGVTGIV--ECELLGEWNFKSRAHN---TDYQGYMFPLLV 135 (196)
Q Consensus 63 ~~vLLv~~~~~~-~W~lPgG~ve~gEs~~~-Aa~REl~EEtGl~~~~--~~~~l~~~~~~~~~~~---~~~~~~~f~~~~ 135 (196)
.++|+.+++..+ .|.+|||+++.||++.+ ||+||++||||+.+.. ... ++.+........ .......+....
T Consensus 24 ~~vl~~~~~~~~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (161)
T COG0494 24 GEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLEL-LGEFPPSPGDGSSVGGREHRVFFVAEV 102 (161)
T ss_pred CEEeEEEccccCCceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeeccee-eeeccCcccCcccccceEEEEEEeeec
Confidence 479999888876 99999999999999888 9999999999999884 333 444432222211 112222222221
Q ss_pred cc--cccc-CC---cCccceeEEEeHHHHHhhccch
Q 029277 136 QD--QLAE-WP---EKNVRSRKWMSVAEARKVCQHW 165 (196)
Q Consensus 136 ~~--~~~~-~~---~~e~~~~~W~~~~el~~~~~~~ 165 (196)
.. .... .. ..+...+.|++++++.......
T Consensus 103 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 138 (161)
T COG0494 103 DDSLAVAIEGLSAPSEELEDLEWVPLDELAALVLAE 138 (161)
T ss_pred cccccccccccCCCcchhhceeeeeHHHcccccccc
Confidence 11 1111 11 2467899999999998775544
No 81
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.44 E-value=1.2e-13 Score=113.74 Aligned_cols=95 Identities=18% Similarity=0.128 Sum_probs=75.2
Q ss_pred EEEEEEEcCC--CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeecccccc
Q 029277 64 EVLVISSQKG--KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAE 141 (196)
Q Consensus 64 ~vLLv~~~~~--~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 141 (196)
++||.++.+. |.+.+-.|.||+|||+++|+.||++||+|+++...++ ++...|.++. ..+.-|.+...++...
T Consensus 156 ~ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY-~~SQPWPfP~----SLMigf~aey~sgeI~ 230 (279)
T COG2816 156 EILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRY-VGSQPWPFPH----SLMLGFMAEYDSGEIT 230 (279)
T ss_pred ceeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeE-EeccCCCCch----hhhhhheeeecccccc
Confidence 5888876553 8899999999999999999999999999999999887 6665555543 4566666776665544
Q ss_pred CCcCccceeEEEeHHHHHhhcc
Q 029277 142 WPEKNVRSRKWMSVAEARKVCQ 163 (196)
Q Consensus 142 ~~~~e~~~~~W~~~~el~~~~~ 163 (196)
....|..+.+||+.+|+..++.
T Consensus 231 ~d~~Eleda~WFs~~evl~~L~ 252 (279)
T COG2816 231 PDEGELEDARWFSRDEVLPALP 252 (279)
T ss_pred CCcchhhhccccCHhHHhhhcC
Confidence 4456889999999999665554
No 82
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.41 E-value=8.6e-12 Score=102.19 Aligned_cols=132 Identities=15% Similarity=0.179 Sum_probs=78.7
Q ss_pred CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-----CCEEe-----cCcccCCCC-------------CHHHHH
Q 029277 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLF-----PKGGWEIDE-------------SIQEAA 93 (196)
Q Consensus 37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-----~~W~l-----PgG~ve~gE-------------s~~~Aa 93 (196)
.++.++.+++++.+ +++||.+|... |.|.. |+++.++|| +..+||
T Consensus 54 l~Hra~~v~i~n~~------------g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA 121 (247)
T PLN02552 54 LLHRAFSVFLFNSK------------YELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAA 121 (247)
T ss_pred ceEEEEEEEEEcCC------------CeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHH
Confidence 56677888888753 27888888654 58955 444444432 168999
Q ss_pred HHHHHHhhceeeee-----cceeeeeEEeeeCCC------C---ceEEEEEEEEe-eccccccCCcCccceeEEEeHHHH
Q 029277 94 LRETIEEAGVTGIV-----ECELLGEWNFKSRAH------N---TDYQGYMFPLL-VQDQLAEWPEKNVRSRKWMSVAEA 158 (196)
Q Consensus 94 ~REl~EEtGl~~~~-----~~~~l~~~~~~~~~~------~---~~~~~~~f~~~-~~~~~~~~~~~e~~~~~W~~~~el 158 (196)
+||+.||+|+.+.. ... ++.+.|..... . .....++|... ..........+|+.+++|++++++
T Consensus 122 ~REL~EElGI~~~~~~~~~l~~-~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~~~~~l~lq~eEV~~~~wvs~~el 200 (247)
T PLN02552 122 QRKLLHELGIPAEDVPVDQFTF-LTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVRDVKVNPNPDEVADVKYVNREEL 200 (247)
T ss_pred HhHHHHHhCCCcccccccccee-eeEEEEecccccccccCCCccceEEEEEEEEEecCCCcccCCHHHhheEEEEeHHHH
Confidence 99999999999543 223 45444444322 1 12222333222 222223334468899999999999
Q ss_pred Hhhcc-------chhHHHHHHHHHHHHhccccCC
Q 029277 159 RKVCQ-------HWWMKEALDRLVMRLTSQQLHG 185 (196)
Q Consensus 159 ~~~~~-------~~~~~~~l~~~~~~l~~~~~~~ 185 (196)
.+++. .|.++.++ ..+...+++.
T Consensus 201 ~~~~~~~~~~~~tpw~~~~~----~~~l~~w~~~ 230 (247)
T PLN02552 201 KEMMRKESGLKLSPWFRLIV----DNFLMKWWDD 230 (247)
T ss_pred HHHHhhcCCcccCHHHHHHH----HHHHHHHHhh
Confidence 98853 34444444 4444555544
No 83
>PLN02791 Nudix hydrolase homolog
Probab=99.30 E-value=5.7e-11 Score=110.29 Aligned_cols=115 Identities=17% Similarity=0.084 Sum_probs=76.5
Q ss_pred CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-----CCEEe-cCcccCCCCCHHHHHHHHHHHhhceeeeec--
Q 029277 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLF-PKGGWEIDESIQEAALRETIEEAGVTGIVE-- 108 (196)
Q Consensus 37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-----~~W~l-PgG~ve~gEs~~~Aa~REl~EEtGl~~~~~-- 108 (196)
.++.++.+.+|+.+ .+++||.+|... |.|.+ ||||++.||++.+||+||+.||+|+.+...
T Consensus 30 l~HrAvhVwIfn~~-----------~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l 98 (770)
T PLN02791 30 DYHRAVHVWIYSES-----------TQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAF 98 (770)
T ss_pred CceEEEEEEEEECC-----------CCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhhe
Confidence 45667777778752 237888877552 78999 799999999999999999999999986432
Q ss_pred ceeeeeEEeeeC--CC--CceEEEEEEEEeeccc----cccCCcCccceeEEEeHHHHHhhcc
Q 029277 109 CELLGEWNFKSR--AH--NTDYQGYMFPLLVQDQ----LAEWPEKNVRSRKWMSVAEARKVCQ 163 (196)
Q Consensus 109 ~~~l~~~~~~~~--~~--~~~~~~~~f~~~~~~~----~~~~~~~e~~~~~W~~~~el~~~~~ 163 (196)
.. ++.+.+... .. ..+...++|.+..... .-..+.+|+.+++|++++|+.+++.
T Consensus 99 ~~-l~~~~~~~~~~~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~~l~ 160 (770)
T PLN02791 99 EL-LFVFLQECVINDGKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKSALA 160 (770)
T ss_pred ee-eeeEEEEeeccCCCcceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHHHHh
Confidence 22 444332211 11 1223444555432211 1122356889999999999987754
No 84
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=99.30 E-value=3.4e-11 Score=87.59 Aligned_cols=127 Identities=25% Similarity=0.295 Sum_probs=84.5
Q ss_pred ceEEEEEEEEEeeccCCcccccCCceEEEEEEEc-------CCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecce
Q 029277 38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQ-------KGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECE 110 (196)
Q Consensus 38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~-------~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~ 110 (196)
++..+|+++++.. + +...|||++.. +.|.|++|+|-...||++..||+||..||+|+-+.-...
T Consensus 2 pK~SAGvLlYR~~---a------G~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~~ 72 (161)
T COG4119 2 PKLSAGVLLYRAR---A------GVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPRI 72 (161)
T ss_pred CcccceeEEEEec---C------CCEEEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeecCchh
Confidence 4578999999986 4 45679999843 337899999999999999999999999999999854333
Q ss_pred eeeeEEeeeCCCCceEEEEEEEEeeccc---------cccCCc--------CccceeEEEeHHHHHhhccchhHHHHHHH
Q 029277 111 LLGEWNFKSRAHNTDYQGYMFPLLVQDQ---------LAEWPE--------KNVRSRKWMSVAEARKVCQHWWMKEALDR 173 (196)
Q Consensus 111 ~l~~~~~~~~~~~~~~~~~~f~~~~~~~---------~~~~~~--------~e~~~~~W~~~~el~~~~~~~~~~~~l~~ 173 (196)
+++.+. .+. -..+..|..+.... ...||. .|.....||++.++..-+.. ..+.+|..
T Consensus 73 ~lG~~k--Q~G---GKvVta~~veae~Dva~~rSntFe~eWPprSG~M~~FPEVDRagWF~l~eAr~Kil~-gQRpfldr 146 (161)
T COG4119 73 DLGSLK--QSG---GKVVTAFGVEAELDVADARSNTFELEWPPRSGKMRKFPEVDRAGWFPLAEARTKILK-GQRPFLDR 146 (161)
T ss_pred hhhhhc--cCC---CcEEEEEeeeeeeehhhhhcceeeeecCCCCCccccCcccccccceecHHHHhHHhh-ccchHHHH
Confidence 244322 111 12223332221100 011111 35688999999999877653 45677777
Q ss_pred HHHHHh
Q 029277 174 LVMRLT 179 (196)
Q Consensus 174 ~~~~l~ 179 (196)
+..+..
T Consensus 147 L~a~~~ 152 (161)
T COG4119 147 LMAHAV 152 (161)
T ss_pred HHHHhc
Confidence 766643
No 85
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.17 E-value=4.1e-12 Score=105.30 Aligned_cols=97 Identities=19% Similarity=0.108 Sum_probs=62.2
Q ss_pred eEEEEEEEcCC--CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEee-c-cc
Q 029277 63 LEVLVISSQKG--KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLV-Q-DQ 138 (196)
Q Consensus 63 ~~vLLv~~~~~--~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~-~-~~ 138 (196)
.+.||.++.+. |.|..++|.+|+|||+++||+||++||||++++.... ...-.++.. .. ..+..+.+.. . ..
T Consensus 200 ~~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~-~asQPWP~~--p~-SLMIgc~ala~~~~~ 275 (345)
T KOG3084|consen 200 KHALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISY-VASQPWPLM--PQ-SLMIGCLALAKLNGK 275 (345)
T ss_pred CEeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEee-eecCCCCCC--ch-HHHHHHHHHHhhCCc
Confidence 36666665443 7899999999999999999999999999999988654 322222210 11 1111111111 1 11
Q ss_pred cccCCcCccceeEEEeHHHHHhhcc
Q 029277 139 LAEWPEKNVRSRKWMSVAEARKVCQ 163 (196)
Q Consensus 139 ~~~~~~~e~~~~~W~~~~el~~~~~ 163 (196)
.....+.|..+.+||+-+|+.+.+.
T Consensus 276 I~vd~dlEleDaqwF~r~ev~~aL~ 300 (345)
T KOG3084|consen 276 ISVDKDLELEDAQWFDREEVKSALT 300 (345)
T ss_pred cccCcchhhhhcccccHHHHHHHHH
Confidence 2222334678999999999876543
No 86
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=99.07 E-value=3.4e-09 Score=82.71 Aligned_cols=101 Identities=14% Similarity=0.104 Sum_probs=65.4
Q ss_pred CceEEEEEEEcCC--CC--EEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCc-eEEEEEEEEee
Q 029277 61 EDLEVLVISSQKG--KG--MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNT-DYQGYMFPLLV 135 (196)
Q Consensus 61 ~~~~vLLv~~~~~--~~--W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~-~~~~~~f~~~~ 135 (196)
++..++|+++-+. |. -+||+|-++.||+++.||+|||+||||+...+...... .|..+...+ ......+.++.
T Consensus 86 G~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gkv~~~s~~--~f~DPGltn~~~~iv~v~idg 163 (225)
T KOG3041|consen 86 GKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKGKVDMVSPT--VFLDPGLTNCNLCIVVVDIDG 163 (225)
T ss_pred CcEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCccceeeecccc--EEcCCCCCCCceEEEEEEecC
Confidence 5668999987665 54 57899999999999999999999999999655433111 233332222 22233444433
Q ss_pred cccccc-----CCcCccceeEEEeHHHHHhhcc
Q 029277 136 QDQLAE-----WPEKNVRSRKWMSVAEARKVCQ 163 (196)
Q Consensus 136 ~~~~~~-----~~~~e~~~~~W~~~~el~~~~~ 163 (196)
...... ..+.|..++.-++..++.+.+.
T Consensus 164 ~~pEnqrp~q~ledgEfIev~~i~~~~L~~~~~ 196 (225)
T KOG3041|consen 164 DVPENQRPVQQLEDGEFIEVFLIPLSELWRELA 196 (225)
T ss_pred CCccccCccccCCCCceEEEEEeeHHHHHHHHH
Confidence 322221 1235668888999988876543
No 87
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=99.05 E-value=7.4e-09 Score=74.57 Aligned_cols=98 Identities=16% Similarity=0.175 Sum_probs=66.8
Q ss_pred EEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeecccc
Q 029277 64 EVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL 139 (196)
Q Consensus 64 ~vLLv~~~~~----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~ 139 (196)
++||.+|..+ |.|+||+|.++.+|+..++..|++.||.++ .... ++.+.+.++. ......+|.+......
T Consensus 15 ~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~H~fth--~~~~~~~~~~~~~~~~ 88 (118)
T cd03431 15 RVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRL---SLEP-LGTVKHTFTH--FRLTLHVYLARLEGDL 88 (118)
T ss_pred eEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCc---cccc-ceeEEEecCC--eEEEEEEEEEEEeCCC
Confidence 7988888654 689999999999999999999999998765 2122 3444444432 2234456665544321
Q ss_pred ccCCcCccceeEEEeHHHHHhhccchhHHHHHH
Q 029277 140 AEWPEKNVRSRKWMSVAEARKVCQHWWMKEALD 172 (196)
Q Consensus 140 ~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~ 172 (196)
.+..+..|++++++..+.....++.+++
T Consensus 89 -----~~~~~~~W~~~eel~~~~~p~~~~kil~ 116 (118)
T cd03431 89 -----LAPDEGRWVPLEELDEYALPTVMRKILE 116 (118)
T ss_pred -----cCccccEEccHHHHhhCCCCHHHHHHHH
Confidence 2345779999999998866665555553
No 88
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=98.98 E-value=4.5e-10 Score=93.09 Aligned_cols=113 Identities=23% Similarity=0.259 Sum_probs=75.5
Q ss_pred CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeeccee
Q 029277 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECEL 111 (196)
Q Consensus 37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~ 111 (196)
..+..+|+.+++.+ .+||+++-... |.|.+|+|.|+++|++.++|+||++||||++......
T Consensus 113 sh~vgvg~~V~n~~------------~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~eV- 179 (295)
T KOG0648|consen 113 SHRVGVGAFVLNKK------------KEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFVEV- 179 (295)
T ss_pred hhheeeeeeEecCC------------ceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhhhhH-
Confidence 55677888888864 37999875432 7899999999999999999999999999997665554
Q ss_pred eeeEEeeeCCCCceEEEEEEEEeecc--ccccCCcCccceeEEEeHHHHHhhc
Q 029277 112 LGEWNFKSRAHNTDYQGYMFPLLVQD--QLAEWPEKNVRSRKWMSVAEARKVC 162 (196)
Q Consensus 112 l~~~~~~~~~~~~~~~~~~f~~~~~~--~~~~~~~~e~~~~~W~~~~el~~~~ 162 (196)
+..-.-+.......+...||.+.... .....++.|+..++|+++++.....
T Consensus 180 la~r~~H~~~~~~~ksd~f~~c~L~p~s~~i~~~~~ei~~~~Wmp~~e~v~qp 232 (295)
T KOG0648|consen 180 LAFRRAHNATFGLIKSDMFFTCELRPRSLDITKCKREIEAAAWMPIEEYVSQP 232 (295)
T ss_pred HHHHhhhcchhhcccccceeEEEeeccccccchhHHHHHHHhcccHHHhhccc
Confidence 32111111110101223455555443 2233345677777999999887664
No 89
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=98.89 E-value=9.9e-09 Score=82.24 Aligned_cols=114 Identities=23% Similarity=0.194 Sum_probs=70.8
Q ss_pred eEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-----CCEEecCcccCC-CCCHHHHHHHHHHHhhceeeeecceee
Q 029277 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFPKGGWEI-DESIQEAALRETIEEAGVTGIVECELL 112 (196)
Q Consensus 39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-----~~W~lPgG~ve~-gEs~~~Aa~REl~EEtGl~~~~~~~~l 112 (196)
|-++..|++... ++ ++.+|||.+|.+. |.-.||||+.|+ +++-..+|.||.+||.|+..+.... +
T Consensus 42 ~~~aVlI~L~~~--~~------~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~-~ 112 (246)
T KOG3069|consen 42 RKAAVLIPLVQV--GS------GELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDV-L 112 (246)
T ss_pred CCccEEEEEEEc--CC------CceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhh-h
Confidence 445555555543 11 4578999887654 788999999998 4677889999999999999765544 4
Q ss_pred eeEEee-eCCCCceEEEEEEEEeecc-ccccCCcCccceeEEEeHHHHHhh
Q 029277 113 GEWNFK-SRAHNTDYQGYMFPLLVQD-QLAEWPEKNVRSRKWMSVAEARKV 161 (196)
Q Consensus 113 ~~~~~~-~~~~~~~~~~~~f~~~~~~-~~~~~~~~e~~~~~W~~~~el~~~ 161 (196)
+...-- .+......-+..|.....- .......+|..++.|+|++++..-
T Consensus 113 g~l~~~~~r~~~~v~p~v~~l~~~~~l~~~~ln~gEv~~~F~VPL~~ll~~ 163 (246)
T KOG3069|consen 113 GALPPFVLRSGWSVFPVVGFLSDKKILPSLRLNSGEVESAFWVPLTDLLLP 163 (246)
T ss_pred hhccceeeccCcccceeEEEEecccccccccCCchheeeeeeeeHHHHhhh
Confidence 432211 1111111112223222211 122334568899999999998654
No 90
>PLN02839 nudix hydrolase
Probab=98.60 E-value=2.6e-07 Score=79.16 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=71.2
Q ss_pred CceEEEEEEEcCC-----CCEE-ecCcccCCCCCHHHHHHHHHHHhhceeee---ecceeeeeEEeeeCCCCc--eEEEE
Q 029277 61 EDLEVLVISSQKG-----KGML-FPKGGWEIDESIQEAALRETIEEAGVTGI---VECELLGEWNFKSRAHNT--DYQGY 129 (196)
Q Consensus 61 ~~~~vLLv~~~~~-----~~W~-lPgG~ve~gEs~~~Aa~REl~EEtGl~~~---~~~~~l~~~~~~~~~~~~--~~~~~ 129 (196)
++.++.+-+|... |+|. +.+|++..||++.++++||+.||.|+... .... .|.+.|....... ....+
T Consensus 216 g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~-~G~VsY~~~~~~g~~~evly 294 (372)
T PLN02839 216 GQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIA-VGAVSYMDIDQYCFKRDVLF 294 (372)
T ss_pred CCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceE-eEEEEEEEEcCCccccCEEE
Confidence 3456555554432 6776 47999999999999999999999999843 2223 6777766443333 33344
Q ss_pred EEEEeecccc-ccCCcCccceeEEEeHHHHHhhccc
Q 029277 130 MFPLLVQDQL-AEWPEKNVRSRKWMSVAEARKVCQH 164 (196)
Q Consensus 130 ~f~~~~~~~~-~~~~~~e~~~~~W~~~~el~~~~~~ 164 (196)
+|....+... +...++|+.++.+++++|+.+.+..
T Consensus 295 ~YDLeLP~df~P~~qDGEVe~F~Lm~v~EV~~~l~~ 330 (372)
T PLN02839 295 CYDLELPQDFVPKNQDGEVESFKLIPVAQVANVIRK 330 (372)
T ss_pred EeeeecCCccccCCCccceeEEEEecHHHHHHHHHc
Confidence 5666655443 3445678899999999999877654
No 91
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=98.49 E-value=1.6e-06 Score=69.04 Aligned_cols=138 Identities=13% Similarity=0.062 Sum_probs=79.1
Q ss_pred CceEEEEEEEEEeeccCCc-ccccCCc--eEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeec-----
Q 029277 37 GRRQVVGCIPYRYKCVKQS-LDINEED--LEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVE----- 108 (196)
Q Consensus 37 ~~r~~vgaii~~~~~~~~g-~~~~~~~--~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~----- 108 (196)
++..++.-|+-+.+.+.+| ++...++ .+++.|++...+.|.+|||.+|+||.+-.+++||+.||.=-.....
T Consensus 110 GPNHaadPiVtRwkrd~~gai~~~sgk~ile~vavkr~d~~~WAiPGGmvdpGE~vs~tLkRef~eEa~ns~~k~~e~~l 189 (275)
T KOG4195|consen 110 GPNHAADPIVTRWKRDEDGAICRKSGKKILEFVAVKRPDNGEWAIPGGMVDPGEKVSATLKREFGEEAMNSLQKSNEEML 189 (275)
T ss_pred CCccccCcceeeeeecCCCCeeecccceeeEEEEEecCCCCcccCCCCcCCchhhhhHHHHHHHHHHHHHHHhhhhHHHH
Confidence 6667777777766533222 1111122 5788899999999999999999999999999999999963222111
Q ss_pred -ce----eeeeEEeeeCCCC--c--eEEEEEEEEeeccc-----cccCCcCccceeEEEeHHHHHhhccchhHHHHHHHH
Q 029277 109 -CE----LLGEWNFKSRAHN--T--DYQGYMFPLLVQDQ-----LAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRL 174 (196)
Q Consensus 109 -~~----~l~~~~~~~~~~~--~--~~~~~~f~~~~~~~-----~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~ 174 (196)
.+ -+..|.-...+.+ . ...+..+...-..+ ......++...++|++++.-..+ +.++.++|+.+
T Consensus 190 ~~~~~~~g~evYkGYvDDpRNTDNaWmET~avn~hde~g~~~~nl~L~AgDda~~vrW~dVn~~l~L--yAshs~fi~lv 267 (275)
T KOG4195|consen 190 HKLLSQCGMEVYKGYVDDPRNTDNAWMETVAVNFHDEDGNNMDNLNLEAGDDAKKVRWVDVNSNLPL--YASHSQFIQLV 267 (275)
T ss_pred HHHHHhCCeEEeeeecCCCCcccccceeEEEEeeeccccchhccccccccCcccceeEEEecCCccc--hhhHHHHHHHH
Confidence 01 0112221111111 1 11122233222221 12223455689999999985544 44556666655
Q ss_pred HH
Q 029277 175 VM 176 (196)
Q Consensus 175 ~~ 176 (196)
..
T Consensus 268 ae 269 (275)
T KOG4195|consen 268 AE 269 (275)
T ss_pred HH
Confidence 43
No 92
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=98.40 E-value=4.7e-06 Score=60.19 Aligned_cols=101 Identities=16% Similarity=0.081 Sum_probs=59.4
Q ss_pred eEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeeccc
Q 029277 63 LEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQ 138 (196)
Q Consensus 63 ~~vLLv~~~~~----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~ 138 (196)
+++||.+|..+ |.|+||.--.+ ++...+.+.+.+.+..|+.+..... ++.+.+.++. ......+|.+.+...
T Consensus 9 ~~~Ll~kRp~~gll~GLwefP~~e~~-~~~~~~~l~~~~~~~~~~~~~~~~~-~~~v~H~fSH--~~~~~~~~~~~~~~~ 84 (114)
T PF14815_consen 9 GRVLLEKRPEKGLLAGLWEFPLIESD-EEDDEEELEEWLEEQLGLSIRSVEP-LGTVKHVFSH--RRWTIHVYEVEVSAD 84 (114)
T ss_dssp SEEEEEE--SSSTTTT-EE--EEE-S-SS-CHHHHHHHTCCSSS-EEEE-S--SEEEEEE-SS--EEEEEEEEEEEEE-S
T ss_pred CEEEEEECCCCChhhcCcccCEeCcc-CCCCHHHHHHHHHHHcCCChhhhee-cCcEEEEccc--eEEEEEEEEEEecCC
Confidence 47999998875 68999997776 3444666677777889998877766 7877776653 344556777766643
Q ss_pred cccCCcCccceeEEEeHHHHHhhccchhHHHHH
Q 029277 139 LAEWPEKNVRSRKWMSVAEARKVCQHWWMKEAL 171 (196)
Q Consensus 139 ~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l 171 (196)
... ...+..|++++++.++.....++.++
T Consensus 85 ~~~----~~~~~~W~~~~~l~~~~~p~~~~kil 113 (114)
T PF14815_consen 85 PPA----EPEEGQWVSLEELDQYPLPTPMRKIL 113 (114)
T ss_dssp S--------TTEEEEEGGGGGGS---HHHHHHH
T ss_pred CCC----CCCCcEEEEHHHHhhCCCCHHHHHHh
Confidence 222 34689999999999876665555544
No 93
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=98.29 E-value=2.7e-06 Score=65.53 Aligned_cols=115 Identities=12% Similarity=0.126 Sum_probs=77.8
Q ss_pred ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-----CCEEe-cCcccCCCCCHHHHHHHHHHHhhceeeee--cc
Q 029277 38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLF-PKGGWEIDESIQEAALRETIEEAGVTGIV--EC 109 (196)
Q Consensus 38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-----~~W~l-PgG~ve~gEs~~~Aa~REl~EEtGl~~~~--~~ 109 (196)
.+.+..+.+|+.+ | ++||.+|... +.|.= .-||--+||+...|++|-+.+|+||+... ..
T Consensus 32 LHrAFS~~lFne~----g--------~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~ 99 (185)
T COG1443 32 LHRAFSSFLFNER----G--------QLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKL 99 (185)
T ss_pred HHhhhheeEECCC----C--------ceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCcc
Confidence 3568889999975 2 5766665432 45642 45776799999999999999999999762 22
Q ss_pred eeeeeEEeeeCCCCc---eEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccch
Q 029277 110 ELLGEWNFKSRAHNT---DYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHW 165 (196)
Q Consensus 110 ~~l~~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~ 165 (196)
.++..+.|...+.++ ..+-.+|.+...... ....+|+.+++|++++++.++...+
T Consensus 100 ~il~rf~YrA~~~~~~~E~Eic~V~~~~~~~~~-~~npdEV~~~~wv~~e~l~~~~~~~ 157 (185)
T COG1443 100 EILPRFRYRAADPDGIVENEICPVLAARLDSAL-DPNPDEVMDYRWVSPEDLKEMVDAT 157 (185)
T ss_pred ccccceEEeccCCCCcceeeeeeEEEEeecCCC-CCChHHhhheeccCHHHHHHhhcCC
Confidence 225556676654333 333445555555422 2234688999999999999886554
No 94
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=97.74 E-value=4.7e-06 Score=70.01 Aligned_cols=106 Identities=20% Similarity=0.219 Sum_probs=70.3
Q ss_pred ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEe
Q 029277 38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF 117 (196)
Q Consensus 38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~ 117 (196)
+-++-|+++++.. .-++||++......|.+|.|++..+|+-..||.||+.||||.++..... .+.+
T Consensus 81 ~iPv~ga~ild~~-----------~sr~llv~g~qa~sw~fprgK~~kdesd~~caiReV~eetgfD~skql~---~~e~ 146 (348)
T KOG2937|consen 81 RIPVRGAIILDEK-----------RSRCLLVKGWQASSWSFPRGKISKDESDSDCAIREVTEETGFDYSKQLQ---DNEG 146 (348)
T ss_pred CCCCchHhhhhhh-----------hhhhheeeceecccccccCccccccchhhhcchhcccchhhcCHHHHhc---cccC
Confidence 3456788999875 3378999877766799999999999999999999999999999765322 1111
Q ss_pred eeCCCCceEEEEEEEEee-c--cccccCCcCccceeEEEeHHHH
Q 029277 118 KSRAHNTDYQGYMFPLLV-Q--DQLAEWPEKNVRSRKWMSVAEA 158 (196)
Q Consensus 118 ~~~~~~~~~~~~~f~~~~-~--~~~~~~~~~e~~~~~W~~~~el 158 (196)
....-.+ .....|.... . ......-..|++.+.|+.++++
T Consensus 147 Ie~nI~d-q~~~~fIi~gvs~d~~f~~~v~~eis~ihW~~l~~l 189 (348)
T KOG2937|consen 147 IETNIRD-QLVRLFIINGVSEDTNFNPRVRKEISKIHWHYLDHL 189 (348)
T ss_pred cccchhh-ceeeeeeeccceeeeecchhhhccccceeeeehhhh
Confidence 1111111 2233343321 1 1112223357889999999998
No 95
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=97.67 E-value=0.00037 Score=53.21 Aligned_cols=97 Identities=25% Similarity=0.170 Sum_probs=62.6
Q ss_pred EEEEEEEcCC-------CCEEe-cCcccCCCC---CHHHH----HHHHHHHhhceee---eecceeeeeEEeeeCCCCce
Q 029277 64 EVLVISSQKG-------KGMLF-PKGGWEIDE---SIQEA----ALRETIEEAGVTG---IVECELLGEWNFKSRAHNTD 125 (196)
Q Consensus 64 ~vLLv~~~~~-------~~W~l-PgG~ve~gE---s~~~A----a~REl~EEtGl~~---~~~~~~l~~~~~~~~~~~~~ 125 (196)
+||+-.|-.+ +.+++ -|||+..++ |..+. +.||+.||.++.- ..... +|.+......-+..
T Consensus 73 evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~-lGlINdd~neVgkV 151 (203)
T COG4112 73 EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEF-LGLINDDTNEVGKV 151 (203)
T ss_pred EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhhee-eeeecCCCcccceE
Confidence 7988887554 45777 689998754 44443 7799999999993 33444 55443222112224
Q ss_pred EEEEEEEEeeccccccCCcCccceeEEEeHHHHHhh
Q 029277 126 YQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKV 161 (196)
Q Consensus 126 ~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~ 161 (196)
++...|....+...-...+.+..+++|+.+.++.+.
T Consensus 152 HiG~lf~~~~k~ndvevKEkd~~~~kwik~~ele~~ 187 (203)
T COG4112 152 HIGALFLGRGKFNDVEVKEKDLFEWKWIKLEELEKF 187 (203)
T ss_pred EEEEEEEeeccccceeeeecceeeeeeeeHHHHHHH
Confidence 556677777665322334556799999999999874
No 96
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=97.42 E-value=0.00091 Score=52.55 Aligned_cols=115 Identities=18% Similarity=0.167 Sum_probs=62.6
Q ss_pred cccCC-CceE-EEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhcee-----
Q 029277 32 QRYQK-GRRQ-VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVT----- 104 (196)
Q Consensus 32 ~~~~~-~~r~-~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~----- 104 (196)
..|.. +.|. +.|+|+++.. +...|||++... ..|.||||.+.+||+..++.+|.+.+-.|..
T Consensus 35 ~~y~~~GmRrsVe~Vllvh~h----------~~PHvLLLq~~~-~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~~~~~~ 103 (188)
T PF13869_consen 35 ENYEKEGMRRSVEGVLLVHEH----------GHPHVLLLQIGN-TFFKLPGGRLRPGEDEIEGLKRKLTEKLSPEDGVDP 103 (188)
T ss_dssp HHHHHHSSEEEEEEEEEEEET----------TEEEEEEEEETT-TEEE-SEEE--TT--HHHHHHHHHHHHHB-SSSS--
T ss_pred HHHHHhCCceEEEEEEEEecC----------CCcEEEEEeccC-ccccCCccEeCCCCChhHHHHHHHHHHcCCCcCCCC
Confidence 34443 4454 4555555553 567899999654 5899999999999999999999999998875
Q ss_pred -eeecceeeeeEEe--------eeCC-C--CceEEEEEEEEeeccccc-cCCcCccceeEEEeHHHHHh
Q 029277 105 -GIVECELLGEWNF--------KSRA-H--NTDYQGYMFPLLVQDQLA-EWPEKNVRSRKWMSVAEARK 160 (196)
Q Consensus 105 -~~~~~~~l~~~~~--------~~~~-~--~~~~~~~~f~~~~~~~~~-~~~~~e~~~~~W~~~~el~~ 160 (196)
..+... ++.|-- .+-. + .......+|.+....... ..| ....+.=+|+=|+-+
T Consensus 104 ~w~vge~-l~~WwRp~Fe~~~YPYlP~HitkPKE~~klylV~Lpe~~~F~VP--kn~kL~AvPLFeLyd 169 (188)
T PF13869_consen 104 DWEVGEC-LGTWWRPNFEPFMYPYLPPHITKPKECIKLYLVQLPEKCLFAVP--KNMKLVAVPLFELYD 169 (188)
T ss_dssp --EEEEE-EEEEEESSSSS--BSS--TT-SS-SEEEEEEEEE--SSEEEEEE--TTSEEEEEEHHHHTT
T ss_pred CcEecCE-EEEEeCCCCCCCCCCCCCcccCChhheeEEEEEecCCCceEecC--CCCeEEeecHhhhhc
Confidence 233444 555421 1100 0 113345566666554321 112 234566667766643
No 97
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=96.73 E-value=0.0017 Score=49.95 Aligned_cols=55 Identities=22% Similarity=0.202 Sum_probs=45.4
Q ss_pred CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhc
Q 029277 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAG 102 (196)
Q Consensus 37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtG 102 (196)
..|.+-|+++++.. +-..|||++-.. -.+.+|||.+++||+-.+.+.|-+.|-.|
T Consensus 68 mRrsvegvlivheH----------~lPHvLLLQig~-tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lg 122 (221)
T KOG1689|consen 68 MRRSVEGVLIVHEH----------NLPHVLLLQIGN-TFFKLPGGRLRPGEDEADGLKRLLTESLG 122 (221)
T ss_pred hhheeeeeEEEeec----------CCCeEEEEeeCC-EEEecCCCccCCCcchhHHHHHHHHHHhc
Confidence 34566777788775 445799998654 47899999999999999999999999999
No 98
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=96.17 E-value=0.045 Score=44.77 Aligned_cols=102 Identities=13% Similarity=0.172 Sum_probs=64.4
Q ss_pred ceEEEEEEEcCC--CCEEecCccc-CCCCCHHHHHHHHHHHhhceeeee---cceeeeeEEeeeCCCC-----ceEEEEE
Q 029277 62 DLEVLVISSQKG--KGMLFPKGGW-EIDESIQEAALRETIEEAGVTGIV---ECELLGEWNFKSRAHN-----TDYQGYM 130 (196)
Q Consensus 62 ~~~vLLv~~~~~--~~W~lPgG~v-e~gEs~~~Aa~REl~EEtGl~~~~---~~~~l~~~~~~~~~~~-----~~~~~~~ 130 (196)
+.-+|||++.-+ +.|.||.+.. +.++++..+|.|++.+-.|=.... ...+++.+.+..+-.. ....+++
T Consensus 138 r~LyLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~e~~~~sk~ff 217 (263)
T KOG4548|consen 138 RKLYLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMTTEEPVSSKVFF 217 (263)
T ss_pred ceEEEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcchhhhheeccCccccccccCcccccccccccceeEE
Confidence 346888885422 6799999999 899999999999999998866432 3333553333222111 1233455
Q ss_pred EEEeeccc-cccCCcCccceeEEEeHHHHHhhccch
Q 029277 131 FPLLVQDQ-LAEWPEKNVRSRKWMSVAEARKVCQHW 165 (196)
Q Consensus 131 f~~~~~~~-~~~~~~~e~~~~~W~~~~el~~~~~~~ 165 (196)
|.+..-.. ..... ...++.|++-+++.+.+...
T Consensus 218 ~k~~lv~~~~~kn~--n~edfvWvTkdel~e~l~~~ 251 (263)
T KOG4548|consen 218 FKASLVANSNQKNQ--NKEDFVWVTKDELGEKLPKF 251 (263)
T ss_pred eeeeeccccchhcc--cccceEEechHHHhhhcchH
Confidence 54443322 21211 23469999999999887654
No 99
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=96.13 E-value=0.018 Score=48.29 Aligned_cols=80 Identities=16% Similarity=0.115 Sum_probs=55.9
Q ss_pred EEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeH
Q 029277 76 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV 155 (196)
Q Consensus 76 W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~ 155 (196)
.+|-+|-++..-|+.+-|..|+.||.|+++....+ +.+++|....+......+.|.+++.+...-.....+.+-...++
T Consensus 81 ielc~g~idke~s~~eia~eev~eecgy~v~~d~l-~hv~~~~~g~~~s~sa~~l~y~ei~es~kis~gggv~~~~~~~~ 159 (405)
T KOG4432|consen 81 IELCAGLIDKELSPREIASEEVAEECGYRVDPDDL-IHVITFVVGAHQSGSAQHLYYAEIDESMKISEGGGVITKVYYPV 159 (405)
T ss_pred eeeeccccccccCHHHHhHHHHHHHhCCcCChhHc-eEEEEEEeccccCccchheeeeecchhhccccCCceeeEEEEee
Confidence 45679999999999999999999999999988887 77777776544444455677777665433222233444444444
Q ss_pred H
Q 029277 156 A 156 (196)
Q Consensus 156 ~ 156 (196)
+
T Consensus 160 ~ 160 (405)
T KOG4432|consen 160 N 160 (405)
T ss_pred h
Confidence 3
No 100
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.50 E-value=0.052 Score=43.05 Aligned_cols=79 Identities=15% Similarity=0.194 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHhhceeeeecc----eeeeeEEeeeCCCCc-eEEEEEEEEeeccccccCC-cCccceeEEEeHHHHHh
Q 029277 87 ESIQEAALRETIEEAGVTGIVEC----ELLGEWNFKSRAHNT-DYQGYMFPLLVQDQLAEWP-EKNVRSRKWMSVAEARK 160 (196)
Q Consensus 87 Es~~~Aa~REl~EEtGl~~~~~~----~~l~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~-~~e~~~~~W~~~~el~~ 160 (196)
.....||+|-|.=|.||...... .+++.+.|..+..+. -.+..-|..-........| .+|+.+++|++.+|+.+
T Consensus 103 lGVr~AAqRkL~~ELGIp~e~v~pee~~~ltrihYkA~sdg~wGEhEiDYiL~~~~~~~~nPnpnEv~e~ryvs~eelke 182 (225)
T KOG0142|consen 103 LGVRRAAQRKLKAELGIPLEEVPPEEFNFLTRIHYKAPSDGIWGEHEIDYILFLVKDVTLNPNPNEVSEIRYVSREELKE 182 (225)
T ss_pred HHHHHHHHHHHHHhhCCCccccCHHHcccceeeeeecCCCCCcccceeeEEEEEeccCCCCCChhhhhHhheecHHHHHH
Confidence 46889999999999999965433 226666666554322 1122233222222222223 35889999999999999
Q ss_pred hccch
Q 029277 161 VCQHW 165 (196)
Q Consensus 161 ~~~~~ 165 (196)
++..+
T Consensus 183 l~~~~ 187 (225)
T KOG0142|consen 183 LVAKA 187 (225)
T ss_pred HHhcc
Confidence 87554
No 101
>PRK10880 adenine DNA glycosylase; Provisional
Probab=95.28 E-value=0.25 Score=42.80 Aligned_cols=96 Identities=16% Similarity=0.099 Sum_probs=48.8
Q ss_pred EEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeecccc
Q 029277 64 EVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL 139 (196)
Q Consensus 64 ~vLLv~~~~~----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~ 139 (196)
++||.+|..+ |.|+||.. +.. + ..++..|+.|+....... ++.+.+.++. .......|.+......
T Consensus 243 ~~~l~~r~~~gl~~gl~~fP~~--~~~----~-~~~~~~~~~~~~~~~~~~-~~~~~H~fTH--~~~~~~~~~~~~~~~~ 312 (350)
T PRK10880 243 EVWLEQRPPSGLWGGLFCFPQF--ADE----E-ELRQWLAQRGIAADNLTQ-LTAFRHTFSH--FHLDIVPMWLPVSSFT 312 (350)
T ss_pred EEEEEECCccChhhccccCCCC--cch----h-hHHHHHHhcCCchhhhcc-cCceEEEEee--EEEEEEEEEEEccccc
Confidence 6888887654 67999963 211 1 245566778875322222 3333333321 1111223333322111
Q ss_pred ccCCcCccceeEEEeHHHHHhhccchhHHHHHH
Q 029277 140 AEWPEKNVRSRKWMSVAEARKVCQHWWMKEALD 172 (196)
Q Consensus 140 ~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~ 172 (196)
...+ .....|++++++..+....-++.+++
T Consensus 313 ~~~~---~~~~~w~~~~~~~~~~~p~~~~k~l~ 342 (350)
T PRK10880 313 GCMD---EGNGLWYNLAQPPSVGLAAPVERLLQ 342 (350)
T ss_pred cccC---CcCCeEechHHhcccCCcHHHHHHHH
Confidence 1111 12346999999998766665555553
No 102
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=94.51 E-value=0.087 Score=44.27 Aligned_cols=90 Identities=21% Similarity=0.148 Sum_probs=57.4
Q ss_pred EEecCcccCCCCCHHHHHHHHHHHhhceeeeeccee-eeeEEeeeCCCCceEEEEEEEEeeccc------cccCCcCccc
Q 029277 76 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECEL-LGEWNFKSRAHNTDYQGYMFPLLVQDQ------LAEWPEKNVR 148 (196)
Q Consensus 76 W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~-l~~~~~~~~~~~~~~~~~~f~~~~~~~------~~~~~~~e~~ 148 (196)
.+|..|.|+..-|..+-|.||..||.|+++....+. ...+. +.-...+... .+|.+++.+. .....++|..
T Consensus 286 lELcag~Vd~p~s~~e~a~~e~veecGYdlp~~~~k~va~y~-sGVG~SG~~Q-Tmfy~eVTdA~rsgpGgg~~ee~E~I 363 (405)
T KOG4432|consen 286 LELCAGRVDDPFSDPEKAARESVEECGYDLPEDSFKLVAKYI-SGVGQSGDTQ-TMFYVEVTDARRSGPGGGEKEEDEDI 363 (405)
T ss_pred eeeecccCCCCcccHHHHHHHHHHHhCCCCCHHHHhhhheee-cccCCcCCee-EEEEEEeehhhccCCCCCccccccee
Confidence 567789999888999999999999999997554321 22221 1111122223 3444554431 1222345778
Q ss_pred eeEEEeHHHHHhhccchhH
Q 029277 149 SRKWMSVAEARKVCQHWWM 167 (196)
Q Consensus 149 ~~~W~~~~el~~~~~~~~~ 167 (196)
+..-+++++++.+...+++
T Consensus 364 Evv~lsle~a~~~~~q~~I 382 (405)
T KOG4432|consen 364 EVVRLSLEDAPSLYRQHNI 382 (405)
T ss_pred eEEEechhhhhHHHhccCC
Confidence 9999999999988765544
No 103
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=93.37 E-value=0.24 Score=40.68 Aligned_cols=100 Identities=16% Similarity=0.190 Sum_probs=65.2
Q ss_pred eEEEEEEEcCC-----CCEE-ecCcccCCCCCHHHHHHHHHHHhhceeeeecc--eeeeeEEeee-CCC--CceEEEEEE
Q 029277 63 LEVLVISSQKG-----KGML-FPKGGWEIDESIQEAALRETIEEAGVTGIVEC--ELLGEWNFKS-RAH--NTDYQGYMF 131 (196)
Q Consensus 63 ~~vLLv~~~~~-----~~W~-lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~--~~l~~~~~~~-~~~--~~~~~~~~f 131 (196)
.++.+-+|.+. ++|. ..+|++-.|-.+.++|+.|..||+.+...... ...|.++|.. ... -.....++|
T Consensus 148 l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~esr~~~~pe~qYVf 227 (306)
T KOG4313|consen 148 LCIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKFESRQGLFPETQYVF 227 (306)
T ss_pred eEEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeEEEeeehhhccCccceEEE
Confidence 45555555442 3443 47999999999999999999999999963322 1145566552 221 123455677
Q ss_pred EEeecccc-ccCCcCccceeEEEeHHHHHhhc
Q 029277 132 PLLVQDQL-AEWPEKNVRSRKWMSVAEARKVC 162 (196)
Q Consensus 132 ~~~~~~~~-~~~~~~e~~~~~W~~~~el~~~~ 162 (196)
....+... +...+.|...+.-+++.+..+.+
T Consensus 228 DL~l~~d~iP~~nDGEV~~F~Lltl~~~v~~l 259 (306)
T KOG4313|consen 228 DLELPLDFIPQNNDGEVQAFELLTLKDCVERL 259 (306)
T ss_pred eccCchhhcCCCCCCceeeEeeecHHHHHHHH
Confidence 76666543 44456778888889888876554
No 104
>PRK13910 DNA glycosylase MutY; Provisional
Probab=89.68 E-value=5.2 Score=33.80 Aligned_cols=26 Identities=12% Similarity=0.088 Sum_probs=18.9
Q ss_pred eeEEEeHHHHHhhccchhHHHHHHHH
Q 029277 149 SRKWMSVAEARKVCQHWWMKEALDRL 174 (196)
Q Consensus 149 ~~~W~~~~el~~~~~~~~~~~~l~~~ 174 (196)
...|++++++.++....-++.+++.+
T Consensus 256 ~~~w~~~~~~~~~~~p~~~~k~~~~l 281 (289)
T PRK13910 256 PIRFYSLKDLETLPISSMTLKILNFL 281 (289)
T ss_pred cceEecHHHhhhcCCcHHHHHHHHHH
Confidence 44899999999887766556665443
No 105
>PF14443 DBC1: DBC1
Probab=84.27 E-value=6 Score=29.17 Aligned_cols=45 Identities=18% Similarity=0.063 Sum_probs=30.5
Q ss_pred eEEEEEEEcCC-----CCEEec--CcccCC-CCCHHHHHHHHHHHhhceeeee
Q 029277 63 LEVLVISSQKG-----KGMLFP--KGGWEI-DESIQEAALRETIEEAGVTGIV 107 (196)
Q Consensus 63 ~~vLLv~~~~~-----~~W~lP--gG~ve~-gEs~~~Aa~REl~EEtGl~~~~ 107 (196)
.++|+.++.+. |.|+-- ||-.+. ...+..+|+|-+++-||++.+.
T Consensus 8 lkFlv~~k~ke~~aiGG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS~ 60 (126)
T PF14443_consen 8 LKFLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLSN 60 (126)
T ss_pred eeeEEeecCceEEecCCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchhh
Confidence 45666655442 556543 444444 3577899999999999999754
No 106
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=74.30 E-value=6.8 Score=24.84 Aligned_cols=31 Identities=26% Similarity=0.172 Sum_probs=18.6
Q ss_pred EEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHH
Q 029277 66 LVISSQKGKGMLFPKGGWEIDESIQEAALRETIE 99 (196)
Q Consensus 66 LLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~E 99 (196)
-++.+.....|.+|||.+-.+- -.|+|..+|
T Consensus 14 tl~ys~~~~GWl~Pgg~vi~NP---lkAqR~AE~ 44 (60)
T PF07026_consen 14 TLPYSHFKNGWLMPGGKVITNP---LKAQRLAEE 44 (60)
T ss_pred EEEEEeccceeecCCCeeEcCH---HHHHHHHHH
Confidence 3333333456999999998653 345554443
No 107
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=65.41 E-value=5.9 Score=23.08 Aligned_cols=23 Identities=30% Similarity=0.164 Sum_probs=11.9
Q ss_pred cCcccCCCCCHHHHHHHHHHHhh
Q 029277 79 PKGGWEIDESIQEAALRETIEEA 101 (196)
Q Consensus 79 PgG~ve~gEs~~~Aa~REl~EEt 101 (196)
-||-..+|--+...+.||+.||.
T Consensus 14 lggLasPgPvp~~~alkELIeEL 36 (43)
T PF03487_consen 14 LGGLASPGPVPSSTALKELIEEL 36 (43)
T ss_dssp ---------S-HHHHHHHHHHHH
T ss_pred hcccCCCCCCCchHHHHHHHHHH
Confidence 36666778888889999999995
No 108
>COG4111 Uncharacterized conserved protein [General function prediction only]
Probab=45.59 E-value=1.1e+02 Score=25.51 Aligned_cols=94 Identities=13% Similarity=0.075 Sum_probs=51.8
Q ss_pred CceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHH-HHHhhceeeeecceeeeeEEeeeCC--CCceEEEEEEEEeecc
Q 029277 61 EDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRE-TIEEAGVTGIVECELLGEWNFKSRA--HNTDYQGYMFPLLVQD 137 (196)
Q Consensus 61 ~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~RE-l~EEtGl~~~~~~~~l~~~~~~~~~--~~~~~~~~~f~~~~~~ 137 (196)
+..+||-|.... .||.|-.++.-...++-+|. +.+.|+......++ +.+|.-.... ........-|......
T Consensus 35 ~~p~VLtV~q~~----aLP~GPfep~hrslq~glr~wV~~qT~~plGYiEQ-LYTF~Dr~R~~~~g~rvisv~YLgLtr~ 109 (322)
T COG4111 35 GGPRVLTVRQGA----ALPSGPFEPAHRSLQAGLRAWVEKQTSQPLGYIEQ-LYTFADRDRRNEGGMRVISVSYLGLTRE 109 (322)
T ss_pred CCceEEEecccc----cCCCCCCchHHHHHHHHHHHHHHHHhcCccchHHh-hhhhccccccCcCCceEEEEEEeeecch
Confidence 456888887543 49999999976555555555 55568888777766 5444322221 1223344455554433
Q ss_pred ccccCCcC--ccceeEEEeHHHHH
Q 029277 138 QLAEWPEK--NVRSRKWMSVAEAR 159 (196)
Q Consensus 138 ~~~~~~~~--e~~~~~W~~~~el~ 159 (196)
.......+ -..-+.+||+++..
T Consensus 110 ~~~~~~~~a~W~~wy~yfPWED~R 133 (322)
T COG4111 110 AADSIHAGAHWADWYGYFPWEDHR 133 (322)
T ss_pred hcccCCccccccchhccCCHhhhc
Confidence 22211110 12345567888764
No 109
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=42.04 E-value=73 Score=26.65 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=14.2
Q ss_pred EEEEEEEcCC----CCEEecCc
Q 029277 64 EVLVISSQKG----KGMLFPKG 81 (196)
Q Consensus 64 ~vLLv~~~~~----~~W~lPgG 81 (196)
++||.++..+ |.|+||+.
T Consensus 240 ~~~~~~r~~~~~~~gl~~~p~~ 261 (275)
T TIGR01084 240 EVLLEQRPEKGLWGGLYCFPQF 261 (275)
T ss_pred eEEEEeCCCCchhhccccCCCC
Confidence 7888888664 67999973
No 110
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=40.69 E-value=13 Score=31.43 Aligned_cols=35 Identities=17% Similarity=-0.045 Sum_probs=31.1
Q ss_pred CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecc
Q 029277 74 KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEC 109 (196)
Q Consensus 74 ~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~ 109 (196)
..|.+ .|+.+.++++.+++.|++.|++|+......
T Consensus 55 ~~W~~-~Gr~~iwl~l~~~~~~lV~~a~~~gf~~hH 89 (295)
T KOG0648|consen 55 QKWYL-QGRKGIWLKLPEELARLVEEAAKYGFDYHH 89 (295)
T ss_pred HHHHH-ccCcccceechHHHHhHHHHHHhcCcEEec
Confidence 36999 999999999999999999999999876543
No 111
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=34.33 E-value=23 Score=30.55 Aligned_cols=26 Identities=31% Similarity=0.188 Sum_probs=21.4
Q ss_pred CcccCCCCCHHHHHHHHHHHhhceee
Q 029277 80 KGGWEIDESIQEAALRETIEEAGVTG 105 (196)
Q Consensus 80 gG~ve~gEs~~~Aa~REl~EEtGl~~ 105 (196)
+=+|+..+-..+.+.||++||+++-+
T Consensus 406 KL~V~~~dLsDe~~MrelReeL~IG~ 431 (466)
T PF09505_consen 406 KLGVEPMDLSDEYVMRELREELNIGV 431 (466)
T ss_pred hhCCChhhcccHHHHHHHHHhcCcce
Confidence 34567778888999999999999874
No 112
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=33.64 E-value=84 Score=27.28 Aligned_cols=22 Identities=27% Similarity=0.148 Sum_probs=16.3
Q ss_pred EEEEEEEcCC----CCEEecCcccCC
Q 029277 64 EVLVISSQKG----KGMLFPKGGWEI 85 (196)
Q Consensus 64 ~vLLv~~~~~----~~W~lPgG~ve~ 85 (196)
+++|.++... |.|+||....+.
T Consensus 248 ~~~l~kr~~~gl~~gl~~fP~~e~~~ 273 (342)
T COG1194 248 EVLLEKRPEKGLLGGLWCFPQFEDEA 273 (342)
T ss_pred chhhhhCcccCceecccccccccccc
Confidence 6888887665 679999876544
No 113
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=27.57 E-value=17 Score=31.28 Aligned_cols=34 Identities=32% Similarity=0.416 Sum_probs=30.9
Q ss_pred CCEEecCcccCCCCCHHHHHHHHHHHhhceeeee
Q 029277 74 KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIV 107 (196)
Q Consensus 74 ~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~ 107 (196)
..|.||.|++..||-+..++.|+-.||+|.....
T Consensus 264 e~~~~~~~k~sr~e~~r~~si~s~~~e~~f~~~s 297 (348)
T KOG2937|consen 264 ENWTFPKGKISRGEKPRDASIRSTFEEPGFPFGS 297 (348)
T ss_pred ccccCcccccccCCccccchhhhcCCCcCCcccc
Confidence 4699999999999999999999999999988544
No 114
>PF13014 KH_3: KH domain
Probab=26.80 E-value=61 Score=18.52 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.6
Q ss_pred HHHHHHHhhceeeeecc
Q 029277 93 ALRETIEEAGVTGIVEC 109 (196)
Q Consensus 93 a~REl~EEtGl~~~~~~ 109 (196)
-+|++.+|||..+.+..
T Consensus 12 ~I~~I~~~tg~~I~i~~ 28 (43)
T PF13014_consen 12 TIKEIREETGAKIQIPP 28 (43)
T ss_pred HHHHHHHHhCcEEEECC
Confidence 37999999999988765
No 115
>PHA02754 hypothetical protein; Provisional
Probab=22.37 E-value=1e+02 Score=19.63 Aligned_cols=29 Identities=24% Similarity=0.118 Sum_probs=24.8
Q ss_pred eHHHHHhhccchhHHHHHHHHHHHHhccc
Q 029277 154 SVAEARKVCQHWWMKEALDRLVMRLTSQQ 182 (196)
Q Consensus 154 ~~~el~~~~~~~~~~~~l~~~~~~l~~~~ 182 (196)
.-+|+++.+....++++++++.+.|...+
T Consensus 3 kAeEi~k~i~eK~Fke~MRelkD~LSe~G 31 (67)
T PHA02754 3 KAEEIPKAIMEKDFKEAMRELKDILSEAG 31 (67)
T ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHhhCc
Confidence 45788999999999999999999987765
Done!