Query 029280
Match_columns 196
No_of_seqs 216 out of 1414
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 16:54:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029280.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029280hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmt_A Homeobox protein BARH-l 99.8 4.2E-20 1.4E-24 132.3 5.4 68 14-82 9-76 (80)
2 2da3_A Alpha-fetoprotein enhan 99.8 6.8E-20 2.3E-24 130.5 4.0 64 18-82 13-76 (80)
3 2kt0_A Nanog, homeobox protein 99.8 1.4E-19 4.8E-24 130.3 4.7 65 17-82 17-81 (84)
4 2vi6_A Homeobox protein nanog; 99.8 1.1E-19 3.9E-24 123.9 3.4 61 21-82 2-62 (62)
5 1nk2_P Homeobox protein VND; h 99.8 4.2E-19 1.4E-23 126.2 5.6 64 20-84 7-70 (77)
6 1wh5_A ZF-HD homeobox family p 99.8 2.2E-19 7.6E-24 129.1 3.8 61 19-80 14-78 (80)
7 1fjl_A Paired protein; DNA-bin 99.8 5.9E-19 2E-23 126.4 5.7 65 18-83 14-78 (81)
8 2h1k_A IPF-1, pancreatic and d 99.8 4E-19 1.4E-23 121.7 4.5 59 22-81 3-61 (63)
9 3a01_A Homeodomain-containing 99.8 3.5E-19 1.2E-23 131.2 4.4 70 19-89 14-83 (93)
10 2cra_A Homeobox protein HOX-B1 99.8 3.4E-19 1.1E-23 124.4 3.6 61 21-82 6-66 (70)
11 2cue_A Paired box protein PAX6 99.8 9.6E-19 3.3E-23 125.2 5.9 64 21-85 6-69 (80)
12 2dmu_A Homeobox protein goosec 99.8 6.3E-19 2.2E-23 122.9 4.8 61 21-82 6-66 (70)
13 2da2_A Alpha-fetoprotein enhan 99.7 4E-19 1.4E-23 123.8 3.8 61 21-82 6-66 (70)
14 2hdd_A Protein (engrailed home 99.7 5.2E-19 1.8E-23 120.3 4.1 58 22-80 3-60 (61)
15 1puf_A HOX-1.7, homeobox prote 99.7 1.3E-18 4.6E-23 123.6 6.4 63 20-83 11-73 (77)
16 2dms_A Homeobox protein OTX2; 99.7 7.6E-19 2.6E-23 125.6 4.9 63 20-83 5-67 (80)
17 1ig7_A Homeotic protein MSX-1; 99.7 8.8E-19 3E-23 117.8 4.7 57 23-80 1-57 (58)
18 1akh_A Protein (mating-type pr 99.7 4.7E-19 1.6E-23 120.3 3.2 60 19-79 2-61 (61)
19 2dmq_A LIM/homeobox protein LH 99.7 1.1E-18 3.6E-23 124.6 5.2 62 21-83 6-67 (80)
20 2da1_A Alpha-fetoprotein enhan 99.7 5.4E-19 1.8E-23 123.2 3.5 61 21-82 6-66 (70)
21 1bw5_A ISL-1HD, insulin gene e 99.7 5.2E-19 1.8E-23 122.0 3.2 61 21-82 2-62 (66)
22 1wh7_A ZF-HD homeobox family p 99.7 5.9E-19 2E-23 127.1 3.2 61 18-80 13-78 (80)
23 2e1o_A Homeobox protein PRH; D 99.7 1.5E-18 5.1E-23 121.1 5.1 60 22-82 7-66 (70)
24 1zq3_P PRD-4, homeotic bicoid 99.7 1.5E-18 5.3E-23 120.5 4.9 60 22-82 2-61 (68)
25 2djn_A Homeobox protein DLX-5; 99.7 8.7E-19 3E-23 122.3 3.3 61 21-82 6-66 (70)
26 1ftt_A TTF-1 HD, thyroid trans 99.7 1.7E-18 5.9E-23 120.3 4.8 60 22-82 2-61 (68)
27 1yz8_P Pituitary homeobox 2; D 99.7 6.6E-19 2.3E-23 122.3 2.5 62 21-83 2-63 (68)
28 1ahd_P Antennapedia protein mu 99.7 1.3E-18 4.3E-23 121.1 3.9 60 22-82 2-61 (68)
29 2l7z_A Homeobox protein HOX-A1 99.7 2.2E-18 7.6E-23 121.4 5.2 62 20-82 5-66 (73)
30 2m0c_A Homeobox protein arista 99.7 1.5E-18 5E-23 122.1 4.2 62 20-82 7-68 (75)
31 1jgg_A Segmentation protein EV 99.7 1.9E-18 6.6E-23 117.1 4.3 58 23-81 2-59 (60)
32 3rkq_A Homeobox protein NKX-2. 99.7 2.4E-18 8.2E-23 115.1 4.1 56 23-79 3-58 (58)
33 3nar_A ZHX1, zinc fingers and 99.7 3.2E-18 1.1E-22 126.6 5.2 65 20-85 23-87 (96)
34 2r5y_A Homeotic protein sex co 99.7 2.1E-18 7.1E-23 125.5 4.0 63 19-82 25-87 (88)
35 1b8i_A Ultrabithorax, protein 99.7 2.1E-18 7.2E-23 123.9 3.9 61 21-82 19-79 (81)
36 2hi3_A Homeodomain-only protei 99.7 4.5E-18 1.5E-22 119.7 5.2 59 23-82 3-62 (73)
37 1uhs_A HOP, homeodomain only p 99.7 4.2E-18 1.4E-22 119.4 5.0 59 23-82 2-61 (72)
38 2k40_A Homeobox expressed in E 99.7 2.4E-18 8.1E-23 119.0 3.5 61 23-84 2-62 (67)
39 3a02_A Homeobox protein arista 99.7 2.6E-18 9E-23 116.4 3.5 57 25-82 2-58 (60)
40 1b72_A Protein (homeobox prote 99.7 3.7E-18 1.3E-22 126.3 4.2 64 20-84 32-95 (97)
41 3a03_A T-cell leukemia homeobo 99.7 5.1E-18 1.7E-22 113.7 4.1 54 27-81 2-55 (56)
42 2ecc_A Homeobox and leucine zi 99.7 8.3E-18 2.8E-22 120.3 4.1 58 25-83 6-63 (76)
43 1x2n_A Homeobox protein pknox1 99.7 1.2E-17 3.9E-22 117.4 4.7 62 21-83 6-70 (73)
44 2ly9_A Zinc fingers and homeob 99.7 1.1E-17 3.7E-22 117.7 4.3 60 22-82 6-65 (74)
45 2da4_A Hypothetical protein DK 99.7 5.3E-18 1.8E-22 121.2 2.3 63 20-82 6-71 (80)
46 2da5_A Zinc fingers and homeob 99.7 1.2E-17 4.3E-22 118.2 4.2 57 25-82 10-66 (75)
47 2cuf_A FLJ21616 protein; homeo 99.7 1.9E-17 6.6E-22 122.0 4.8 63 20-83 5-82 (95)
48 2dn0_A Zinc fingers and homeob 99.7 9.9E-18 3.4E-22 118.8 2.8 58 24-82 10-67 (76)
49 1puf_B PRE-B-cell leukemia tra 99.7 1.4E-17 4.8E-22 116.9 3.6 61 23-84 2-65 (73)
50 1du6_A PBX1, homeobox protein 99.7 1.3E-17 4.6E-22 114.1 2.5 58 22-80 3-63 (64)
51 1k61_A Mating-type protein alp 99.7 3.2E-17 1.1E-21 110.9 4.3 54 26-80 2-58 (60)
52 1au7_A Protein PIT-1, GHF-1; c 99.7 1.4E-17 4.7E-22 132.0 2.8 63 18-81 83-145 (146)
53 1b72_B Protein (PBX1); homeodo 99.7 4.4E-17 1.5E-21 117.9 4.8 62 23-85 2-66 (87)
54 2xsd_C POU domain, class 3, tr 99.7 2.3E-17 7.9E-22 133.1 3.0 66 18-84 95-160 (164)
55 2ecb_A Zinc fingers and homeob 99.7 5E-17 1.7E-21 119.4 4.0 55 27-82 16-70 (89)
56 2cqx_A LAG1 longevity assuranc 99.6 1.5E-17 5.1E-22 117.3 1.0 58 23-81 9-67 (72)
57 1mnm_C Protein (MAT alpha-2 tr 99.6 6.8E-17 2.3E-21 117.2 4.5 59 21-80 26-87 (87)
58 2dmp_A Zinc fingers and homeob 99.6 8.8E-17 3E-21 117.5 4.8 56 26-82 17-72 (89)
59 1le8_B Mating-type protein alp 99.6 4.5E-17 1.5E-21 117.4 3.2 61 24-85 4-67 (83)
60 2dmn_A Homeobox protein TGIF2L 99.6 1E-16 3.5E-21 115.7 5.0 62 21-82 6-69 (83)
61 1e3o_C Octamer-binding transcr 99.6 5.7E-17 1.9E-21 130.0 3.7 61 20-81 99-159 (160)
62 3d1n_I POU domain, class 6, tr 99.6 8.1E-17 2.8E-21 127.8 3.9 62 18-80 89-150 (151)
63 2da6_A Hepatocyte nuclear fact 99.6 2E-16 7E-21 118.9 5.7 64 19-83 3-87 (102)
64 1lfb_A Liver transcription fac 99.6 5.2E-17 1.8E-21 121.4 2.0 67 17-84 4-91 (99)
65 2l9r_A Homeobox protein NKX-3. 99.6 1.2E-16 4.2E-21 112.1 2.4 57 26-83 8-64 (69)
66 1wi3_A DNA-binding protein SAT 99.6 2.5E-16 8.5E-21 110.4 3.9 57 21-78 6-63 (71)
67 3nau_A Zinc fingers and homeob 99.6 3E-16 1E-20 109.3 3.9 53 29-82 11-63 (66)
68 2e19_A Transcription factor 8; 99.6 2.6E-16 9E-21 108.6 2.6 55 26-81 7-61 (64)
69 1x2m_A LAG1 longevity assuranc 99.6 1.8E-16 6.2E-21 109.9 1.5 49 31-80 9-58 (64)
70 3l1p_A POU domain, class 5, tr 99.6 3.9E-16 1.3E-20 124.7 3.1 60 21-81 95-154 (155)
71 2d5v_A Hepatocyte nuclear fact 99.6 3.6E-16 1.2E-20 125.3 2.9 64 19-83 94-157 (164)
72 3k2a_A Homeobox protein MEIS2; 99.6 1.2E-15 4.1E-20 106.0 3.0 60 27-87 3-65 (67)
73 1ic8_A Hepatocyte nuclear fact 99.4 3.4E-14 1.2E-18 117.6 1.5 62 18-80 111-193 (194)
74 2lk2_A Homeobox protein TGIF1; 99.3 7.2E-13 2.5E-17 97.2 4.2 57 27-84 10-69 (89)
75 2h8r_A Hepatocyte nuclear fact 99.3 9.6E-13 3.3E-17 110.8 3.5 61 17-78 137-218 (221)
76 2da7_A Zinc finger homeobox pr 99.3 1.3E-12 4.3E-17 91.9 2.9 46 31-77 14-59 (71)
77 1mh3_A Maltose binding-A1 home 99.2 2.4E-12 8.2E-17 113.1 1.9 54 25-79 368-421 (421)
78 2nzz_A Penetratin conjugated G 98.7 3.7E-10 1.3E-14 70.0 -2.4 23 65-87 1-23 (37)
79 2ys9_A Homeobox and leucine zi 92.5 0.043 1.5E-06 38.1 1.4 43 30-73 14-56 (70)
80 1hjb_A Ccaat/enhancer binding 91.0 0.64 2.2E-05 33.3 6.3 51 74-128 28-78 (87)
81 1gu4_A CAAT/enhancer binding p 88.4 0.94 3.2E-05 31.8 5.3 48 74-125 28-75 (78)
82 1ci6_A Transcription factor AT 87.7 2.1 7E-05 28.6 6.5 40 84-124 22-61 (63)
83 1t2k_D Cyclic-AMP-dependent tr 85.1 4.1 0.00014 26.7 6.9 38 86-124 23-60 (61)
84 2jn6_A Protein CGL2762, transp 83.1 0.5 1.7E-05 33.0 1.8 42 26-73 3-46 (97)
85 2wt7_A Proto-oncogene protein 82.9 5.3 0.00018 26.4 6.8 39 85-124 23-61 (63)
86 2elh_A CG11849-PA, LD40883P; s 77.6 1.6 5.5E-05 30.1 2.9 44 23-72 17-60 (87)
87 2dgc_A Protein (GCN4); basic d 75.9 4.3 0.00015 27.1 4.5 32 92-124 30-61 (63)
88 2glo_A Brinker CG9653-PA; prot 75.7 1.7 6E-05 27.7 2.4 45 26-72 3-47 (59)
89 1jnm_A Proto-oncogene C-JUN; B 75.7 4.4 0.00015 26.6 4.5 36 88-124 25-60 (62)
90 2oxj_A Hybrid alpha/beta pepti 75.6 5.1 0.00018 23.7 4.2 29 96-125 5-33 (34)
91 1gd2_E Transcription factor PA 72.7 12 0.0004 25.6 6.1 39 85-124 29-67 (70)
92 3m48_A General control protein 71.2 6 0.0002 23.3 3.7 29 96-125 4-32 (33)
93 3c3g_A Alpha/beta peptide with 71.0 7.5 0.00026 22.9 4.1 29 96-125 4-32 (33)
94 2yy0_A C-MYC-binding protein; 70.7 7.7 0.00026 25.0 4.6 32 92-124 19-50 (53)
95 1hlv_A CENP-B, major centromer 69.0 4.9 0.00017 29.0 3.9 49 25-77 4-52 (131)
96 3c3f_A Alpha/beta peptide with 68.9 8.8 0.0003 22.7 4.1 29 96-125 5-33 (34)
97 1tc3_C Protein (TC3 transposas 63.7 3.9 0.00013 23.6 2.0 41 27-73 4-44 (51)
98 1kd8_B GABH BLL, GCN4 acid bas 62.8 13 0.00044 22.3 4.0 30 95-125 4-33 (36)
99 2bni_A General control protein 61.4 13 0.00044 22.0 3.8 28 96-124 5-32 (34)
100 1kd8_A GABH AIV, GCN4 acid bas 58.8 17 0.00057 21.8 4.0 29 96-125 5-33 (36)
101 3hug_A RNA polymerase sigma fa 58.3 5.4 0.00018 27.3 2.2 46 28-79 37-82 (92)
102 1uo4_A General control protein 58.1 18 0.00063 21.3 4.1 29 96-125 5-33 (34)
103 1jko_C HIN recombinase, DNA-in 55.8 3.4 0.00012 24.4 0.7 41 28-74 5-45 (52)
104 1dh3_A Transcription factor CR 53.8 40 0.0014 21.6 5.7 32 92-124 22-53 (55)
105 2hy6_A General control protein 52.9 24 0.00084 20.8 4.0 28 96-124 5-32 (34)
106 2o8x_A Probable RNA polymerase 52.1 6.2 0.00021 25.0 1.6 44 28-77 15-58 (70)
107 1s7o_A Hypothetical UPF0122 pr 51.3 23 0.00078 25.6 4.8 47 28-80 22-68 (113)
108 1gd2_E Transcription factor PA 51.2 23 0.0008 24.0 4.4 38 81-119 32-69 (70)
109 1hjb_A Ccaat/enhancer binding 50.6 33 0.0011 24.3 5.3 46 78-124 36-81 (87)
110 1xsv_A Hypothetical UPF0122 pr 49.4 18 0.00062 26.0 3.9 47 28-80 25-71 (113)
111 2yy0_A C-MYC-binding protein; 48.1 23 0.00077 22.8 3.8 32 84-116 18-49 (53)
112 2x7l_M HIV REV; nuclear export 46.8 15 0.0005 27.5 3.0 39 34-87 15-53 (115)
113 2jee_A YIIU; FTSZ, septum, coi 45.1 56 0.0019 22.9 5.7 36 86-122 28-63 (81)
114 3lph_A Protein REV; helix-loop 44.6 22 0.00074 24.5 3.4 38 34-86 18-55 (72)
115 2wq1_A General control protein 44.1 41 0.0014 19.7 4.0 27 97-124 5-31 (33)
116 2wt7_B Transcription factor MA 43.8 47 0.0016 23.7 5.2 39 86-125 49-87 (90)
117 1t2k_D Cyclic-AMP-dependent tr 43.0 64 0.0022 20.7 5.7 32 91-123 21-52 (61)
118 3mzy_A RNA polymerase sigma-H 40.8 14 0.00046 26.7 2.1 41 28-75 109-149 (164)
119 2r2v_A GCN4 leucine zipper; co 40.0 51 0.0017 19.4 4.0 28 96-124 5-32 (34)
120 3c57_A Two component transcrip 39.9 15 0.00051 25.4 2.1 46 27-79 26-71 (95)
121 1tty_A Sigma-A, RNA polymerase 39.8 15 0.0005 24.9 2.0 46 28-79 18-67 (87)
122 2rn7_A IS629 ORFA; helix, all 38.8 24 0.00082 24.5 3.1 47 26-72 4-52 (108)
123 1ku3_A Sigma factor SIGA; heli 38.5 15 0.00051 23.9 1.8 41 27-73 9-53 (73)
124 1p4w_A RCSB; solution structur 37.4 26 0.0009 24.7 3.1 43 26-75 32-74 (99)
125 2p7v_B Sigma-70, RNA polymeras 36.3 12 0.0004 24.0 1.0 44 28-73 5-48 (68)
126 1fse_A GERE; helix-turn-helix 36.2 18 0.0006 23.0 1.9 45 26-77 9-53 (74)
127 1gu4_A CAAT/enhancer binding p 36.2 95 0.0032 21.3 5.7 37 89-126 33-69 (78)
128 1uii_A Geminin; human, DNA rep 36.0 99 0.0034 21.7 5.8 30 93-123 47-76 (83)
129 1je8_A Nitrate/nitrite respons 35.3 13 0.00045 25.0 1.2 46 26-78 19-64 (82)
130 3fmy_A HTH-type transcriptiona 35.2 22 0.00074 23.1 2.2 42 27-76 9-50 (73)
131 2wuj_A Septum site-determining 35.1 41 0.0014 21.6 3.5 33 89-122 24-56 (57)
132 1iuf_A Centromere ABP1 protein 34.4 36 0.0012 25.3 3.6 47 23-73 6-59 (144)
133 2k27_A Paired box protein PAX- 34.1 32 0.0011 25.5 3.3 41 27-73 24-64 (159)
134 1go4_E MAD1 (mitotic arrest de 33.0 78 0.0027 22.9 5.1 32 93-125 13-44 (100)
135 1no4_A Late, head morphogenesi 32.5 1.3E+02 0.0044 21.1 6.1 44 81-125 29-72 (97)
136 3vmx_A Voltage-gated hydrogen 31.7 99 0.0034 19.5 5.7 40 85-125 4-43 (48)
137 1u78_A TC3 transposase, transp 31.4 27 0.00092 24.8 2.4 42 27-74 5-46 (141)
138 1or7_A Sigma-24, RNA polymeras 30.9 22 0.00075 26.6 1.9 43 29-77 141-183 (194)
139 1x3u_A Transcriptional regulat 30.9 12 0.00041 24.3 0.3 45 28-79 16-60 (79)
140 1rp3_A RNA polymerase sigma fa 30.8 22 0.00074 27.4 1.9 44 28-77 187-230 (239)
141 2kvr_A Ubiquitin carboxyl-term 30.7 31 0.0011 25.9 2.7 25 51-75 70-94 (130)
142 3o9x_A Uncharacterized HTH-typ 29.7 27 0.00091 25.2 2.1 41 28-76 70-110 (133)
143 2hxi_A Putative transcriptiona 29.4 20 0.00067 28.6 1.4 54 24-79 24-78 (241)
144 1ci6_A Transcription factor AT 29.3 1.2E+02 0.0041 19.7 5.5 27 86-112 31-57 (63)
145 3ulq_B Transcriptional regulat 29.2 28 0.00096 24.0 2.1 42 24-72 25-66 (90)
146 1go4_E MAD1 (mitotic arrest de 29.2 1.1E+02 0.0039 22.1 5.4 35 84-119 11-45 (100)
147 3fiw_A Putative TETR-family tr 29.1 19 0.00065 28.0 1.3 55 23-79 19-74 (211)
148 2wt7_A Proto-oncogene protein 28.0 1.2E+02 0.0042 19.5 5.9 33 91-124 22-54 (63)
149 3w03_C DNA repair protein XRCC 27.8 76 0.0026 25.4 4.7 32 91-123 151-182 (184)
150 1nkp_B MAX protein, MYC proto- 27.7 1E+02 0.0035 20.8 4.8 33 93-126 48-80 (83)
151 2qko_A Possible transcriptiona 27.1 20 0.0007 27.0 1.1 42 35-78 35-76 (215)
152 2rnj_A Response regulator prot 27.0 15 0.00051 25.0 0.3 47 26-79 27-73 (91)
153 3v86_A De novo design helix; c 26.7 63 0.0021 17.6 2.7 22 97-119 5-26 (27)
154 1deb_A APC protein, adenomatou 26.6 87 0.003 20.1 3.8 20 94-113 5-24 (54)
155 3i5g_B Myosin regulatory light 26.5 1.3E+02 0.0045 21.8 5.6 40 26-65 7-50 (153)
156 2x48_A CAG38821; archeal virus 26.3 22 0.00075 21.5 0.9 36 31-72 18-53 (55)
157 3m9b_A Proteasome-associated A 25.9 1.1E+02 0.0037 25.7 5.4 37 83-120 59-95 (251)
158 2j5u_A MREC protein; bacterial 25.7 49 0.0017 27.4 3.3 37 90-127 24-63 (255)
159 3m91_A Proteasome-associated A 23.1 1.5E+02 0.0051 18.8 5.9 35 89-124 13-47 (51)
160 3s4r_A Vimentin; alpha-helix, 23.0 1.9E+02 0.0064 20.3 5.5 36 85-121 56-91 (93)
161 1pdn_C Protein (PRD paired); p 22.8 41 0.0014 23.1 2.0 41 27-73 16-56 (128)
162 3m9b_A Proteasome-associated A 22.7 1E+02 0.0035 25.9 4.7 41 84-125 53-93 (251)
163 3a2a_A Voltage-gated hydrogen 22.6 1.7E+02 0.0057 19.1 4.8 41 85-126 11-51 (58)
164 1jnm_A Proto-oncogene C-JUN; B 21.4 1.7E+02 0.0057 18.7 6.8 35 91-126 21-55 (62)
165 1l0o_C Sigma factor; bergerat 21.1 20 0.00069 27.5 0.0 40 28-73 198-237 (243)
166 2q0o_A Probable transcriptiona 20.9 46 0.0016 26.3 2.1 45 26-77 173-217 (236)
167 2xi8_A Putative transcription 20.3 18 0.00063 22.0 -0.3 23 53-75 17-39 (66)
No 1
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=4.2e-20 Score=132.27 Aligned_cols=68 Identities=32% Similarity=0.575 Sum_probs=61.5
Q ss_pred hhhhccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHh
Q 029280 14 EAKRKKKSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (196)
Q Consensus 14 ~~~~~~kk~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq 82 (196)
+.....++.++.|++||..|+.+||..|..+ +||+...+.+||..|||++.||+|||||||+|+|+..
T Consensus 9 ~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 9 EPGTKAKKGRRSRTVFTELQLMGLEKRFEKQ-KYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CSCCCCCCCCCSCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 3344456678889999999999999999999 9999999999999999999999999999999999854
No 2
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=6.8e-20 Score=130.55 Aligned_cols=64 Identities=25% Similarity=0.442 Sum_probs=59.4
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHh
Q 029280 18 KKKSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (196)
Q Consensus 18 ~~kk~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq 82 (196)
..++.++.|++||.+|+.+||..|..+ +||+...+.+||..|||++.||+|||||||+++|+.+
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLLD-SNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHHC-SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 344567889999999999999999999 9999999999999999999999999999999999854
No 3
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-19 Score=130.29 Aligned_cols=65 Identities=29% Similarity=0.432 Sum_probs=60.2
Q ss_pred hccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHh
Q 029280 17 RKKKSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (196)
Q Consensus 17 ~~~kk~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq 82 (196)
...++.++.|+.||..|+.+||..|..+ +||+...+..||..|||++.||+|||||||+++|+.+
T Consensus 17 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 17 KVPVKKQKTRTVFSSTQLCVLNDRFQRQ-KYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCCSCSCCCSSCCCHHHHHHHHHHHHHS-SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 3455667889999999999999999999 9999999999999999999999999999999999854
No 4
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.77 E-value=1.1e-19 Score=123.90 Aligned_cols=61 Identities=31% Similarity=0.468 Sum_probs=53.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHh
Q 029280 21 SKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (196)
Q Consensus 21 k~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq 82 (196)
+.++.|+.||..|+.+||..|..+ +||+...+.+||..+||++.||+|||||||+++|++|
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQ-KYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 346779999999999999999999 9999999999999999999999999999999999864
No 5
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.76 E-value=4.2e-19 Score=126.18 Aligned_cols=64 Identities=34% Similarity=0.478 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHhhH
Q 029280 20 KSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQIE 84 (196)
Q Consensus 20 kk~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq~~ 84 (196)
+++++.|++||..|+.+||..|..+ +||+...+.+||..|||++.||+|||||||+++|+.+..
T Consensus 7 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~ 70 (77)
T 1nk2_P 7 NKKRKRRVLFTKAQTYELERRFRQQ-RYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcc
Confidence 4456779999999999999999999 999999999999999999999999999999999986554
No 6
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.76 E-value=2.2e-19 Score=129.15 Aligned_cols=61 Identities=15% Similarity=0.305 Sum_probs=57.1
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHh
Q 029280 19 KKSKMKNKRRFSDEQIRLLESIFES----ESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (196)
Q Consensus 19 ~kk~rr~Rtr~t~eQl~~LE~~F~~----~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Kr 80 (196)
.++++|.|+.||.+|+..||..|+. + +||+...+.+||..|||+++||+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~-~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRI-QRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCC-CTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcC-CCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 3456778999999999999999999 9 99999999999999999999999999999999875
No 7
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.76 E-value=5.9e-19 Score=126.44 Aligned_cols=65 Identities=26% Similarity=0.488 Sum_probs=58.6
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHhh
Q 029280 18 KKKSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQI 83 (196)
Q Consensus 18 ~~kk~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq~ 83 (196)
.+++.++.|++||..|+.+||..|..+ +||+...+..||..|||++.||++||||||+++|+...
T Consensus 14 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 14 LKRKQRRSRTTFSASQLDELERAFERT-QYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp ---CCCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 345567889999999999999999999 99999999999999999999999999999999998543
No 8
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.76 E-value=4e-19 Score=121.66 Aligned_cols=59 Identities=27% Similarity=0.594 Sum_probs=55.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhH
Q 029280 22 KMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSK 81 (196)
Q Consensus 22 ~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krk 81 (196)
.++.|++||..|+.+||..|..+ +||+...+.+||..+||++.||+|||||||+++|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFN-KYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 46779999999999999999999 999999999999999999999999999999999984
No 9
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.76 E-value=3.5e-19 Score=131.22 Aligned_cols=70 Identities=27% Similarity=0.504 Sum_probs=60.7
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHhhHHHHHH
Q 029280 19 KKSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQIEHDYAQ 89 (196)
Q Consensus 19 ~kk~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq~~~e~~~ 89 (196)
.++.++.|++||..|+.+||..|..+ +||+...+.+||..|||++.||+|||||||+|+|+...+.....
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~~ 83 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQ-KYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAE 83 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC----
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHHH
Confidence 34556789999999999999999999 99999999999999999999999999999999999765554433
No 10
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=3.4e-19 Score=124.44 Aligned_cols=61 Identities=30% Similarity=0.504 Sum_probs=57.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHh
Q 029280 21 SKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (196)
Q Consensus 21 k~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq 82 (196)
+.+++|++||..|+.+||..|..+ +||+...+.+||..|||++.||+|||||||+++|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 6 SGRKKRIPYSKGQLRELEREYAAN-KFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCSCCCSCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 456779999999999999999999 9999999999999999999999999999999999854
No 11
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=9.6e-19 Score=125.18 Aligned_cols=64 Identities=28% Similarity=0.574 Sum_probs=58.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHhhHH
Q 029280 21 SKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQIEH 85 (196)
Q Consensus 21 k~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq~~~ 85 (196)
+.++.|++||..|+.+||..|..+ +||+...+.+||..|||++.||+|||||||+++|+.....
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFERT-HYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhh
Confidence 446779999999999999999999 9999999999999999999999999999999999865443
No 12
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=6.3e-19 Score=122.92 Aligned_cols=61 Identities=30% Similarity=0.645 Sum_probs=57.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHh
Q 029280 21 SKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (196)
Q Consensus 21 k~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq 82 (196)
+.++.|++||.+|+.+||..|..+ +||+...+.+||..|||++.||+|||||||+++|+..
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQET-KYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 346779999999999999999999 9999999999999999999999999999999999854
No 13
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.75 E-value=4e-19 Score=123.81 Aligned_cols=61 Identities=28% Similarity=0.521 Sum_probs=57.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHh
Q 029280 21 SKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (196)
Q Consensus 21 k~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq 82 (196)
+.++.|++||..|+.+||..|..+ +||+...+..||..|||++.||+|||||||+++|+..
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 6 SGRSSRTRFTDYQLRVLQDFFDAN-AYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 456789999999999999999999 9999999999999999999999999999999999854
No 14
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.75 E-value=5.2e-19 Score=120.25 Aligned_cols=58 Identities=38% Similarity=0.669 Sum_probs=53.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHh
Q 029280 22 KMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (196)
Q Consensus 22 ~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Kr 80 (196)
.+++|+.||..|+..||..|..+ +||+...+.+||..+||++.||++||||||+++|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNEN-RYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 46779999999999999999999 99999999999999999999999999999999987
No 15
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.75 E-value=1.3e-18 Score=123.56 Aligned_cols=63 Identities=33% Similarity=0.460 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHhh
Q 029280 20 KSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQI 83 (196)
Q Consensus 20 kk~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq~ 83 (196)
++.++.|++||..|+.+||..|..+ +||+...+.+||..|||++.||+|||||||+++|+...
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFN-MYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 3456789999999999999999999 99999999999999999999999999999999998543
No 16
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=7.6e-19 Score=125.60 Aligned_cols=63 Identities=25% Similarity=0.506 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHhh
Q 029280 20 KSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQI 83 (196)
Q Consensus 20 kk~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq~ 83 (196)
++.++.|++||.+|+.+||..|..+ +||+...+.+||..|||++.+|+|||||||+++|+.+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKT-RYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 3457789999999999999999999 99999999999999999999999999999999998643
No 17
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.74 E-value=8.8e-19 Score=117.76 Aligned_cols=57 Identities=33% Similarity=0.531 Sum_probs=54.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHh
Q 029280 23 MKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (196)
Q Consensus 23 rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Kr 80 (196)
+++|+.||..|+.+||..|..+ +||+...+.+||..+||++.||++||||||+++|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQK-QYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 4678999999999999999999 99999999999999999999999999999999986
No 18
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.74 E-value=4.7e-19 Score=120.25 Aligned_cols=60 Identities=37% Similarity=0.595 Sum_probs=48.5
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHH
Q 029280 19 KKSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWK 79 (196)
Q Consensus 19 ~kk~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~K 79 (196)
+++.++.|++||..|+.+||..|..+ +||+...+..||..+||++.||++||||||+++|
T Consensus 2 k~k~rr~Rt~ft~~q~~~Le~~f~~~-~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 2 KEKSPKGKSSISPQARAFLEEVFRRK-QSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ----------CCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhC-CCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 44567889999999999999999999 9999999999999999999999999999999975
No 19
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-18 Score=124.59 Aligned_cols=62 Identities=27% Similarity=0.547 Sum_probs=58.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHhh
Q 029280 21 SKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQI 83 (196)
Q Consensus 21 k~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq~ 83 (196)
+.++.|++||.+|+.+||..|..+ +||+...+..||..|||++.||+|||||||+++|++..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 6 SGKRMRTSFKHHQLRTMKSYFAIN-HNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHH
Confidence 446779999999999999999999 99999999999999999999999999999999998643
No 20
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.74 E-value=5.4e-19 Score=123.15 Aligned_cols=61 Identities=21% Similarity=0.432 Sum_probs=57.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHh
Q 029280 21 SKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (196)
Q Consensus 21 k~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq 82 (196)
+.++.|++||.+|+.+||..|..+ +||+...+.+||..|||++.||+|||||||+++|+..
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 6 SGKRPRTRITDDQLRVLRQYFDIN-NSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCSCSCCCCHHHHHHHHHHHHHC-SSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 456789999999999999999999 9999999999999999999999999999999999854
No 21
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.74 E-value=5.2e-19 Score=122.05 Aligned_cols=61 Identities=25% Similarity=0.511 Sum_probs=57.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHh
Q 029280 21 SKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (196)
Q Consensus 21 k~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq 82 (196)
+.+++|++||.+|+..||..|..+ +||+...+..||..+||++.||++||||||+++|++.
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAAN-PRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHC-SCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 356789999999999999999999 9999999999999999999999999999999999854
No 22
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.74 E-value=5.9e-19 Score=127.10 Aligned_cols=61 Identities=20% Similarity=0.310 Sum_probs=56.3
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhh-----cCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHh
Q 029280 18 KKKSKMKNKRRFSDEQIRLLESIFES-----ESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (196)
Q Consensus 18 ~~kk~rr~Rtr~t~eQl~~LE~~F~~-----~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Kr 80 (196)
..++++|.|+.||.+|+..|| .|.. + +||+...+.+||..|||+++||+|||||||+|+|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~-~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRI-QKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCC-CSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCC-CCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 344567889999999999999 7999 9 99999999999999999999999999999999875
No 23
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=1.5e-18 Score=121.11 Aligned_cols=60 Identities=38% Similarity=0.662 Sum_probs=56.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHh
Q 029280 22 KMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (196)
Q Consensus 22 ~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq 82 (196)
.+++|++||.+|+.+||..|..+ +||+...+.+||..|||++.||++||||||+++|+..
T Consensus 7 ~~r~R~~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 7 GKGGQVRFSNDQTIELEKKFETQ-KYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 35668999999999999999999 9999999999999999999999999999999999854
No 24
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.73 E-value=1.5e-18 Score=120.54 Aligned_cols=60 Identities=30% Similarity=0.492 Sum_probs=56.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHh
Q 029280 22 KMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (196)
Q Consensus 22 ~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq 82 (196)
+++.|++||..|+.+||..|..+ +||+...+..||..|||++.+|+|||||||+++|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~ 61 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQG-RYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQS 61 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHh
Confidence 46779999999999999999999 9999999999999999999999999999999999854
No 25
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=8.7e-19 Score=122.32 Aligned_cols=61 Identities=34% Similarity=0.513 Sum_probs=57.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHh
Q 029280 21 SKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (196)
Q Consensus 21 k~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq 82 (196)
+.++.|++||..|+.+||..|..+ +||+...+.+||..|||++.||++||||||+++|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 6 SGRKPRTIYSSFQLAALQRRFQKT-QYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHcCC-CCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 456779999999999999999999 9999999999999999999999999999999999853
No 26
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.73 E-value=1.7e-18 Score=120.28 Aligned_cols=60 Identities=33% Similarity=0.540 Sum_probs=57.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHh
Q 029280 22 KMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (196)
Q Consensus 22 ~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq 82 (196)
+++.|++||..|+.+||..|..+ +||+...+.+||..|||++.+|+|||||||+++|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQ-KYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCccCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 46779999999999999999999 9999999999999999999999999999999999854
No 27
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.73 E-value=6.6e-19 Score=122.29 Aligned_cols=62 Identities=24% Similarity=0.583 Sum_probs=58.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHhh
Q 029280 21 SKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQI 83 (196)
Q Consensus 21 k~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq~ 83 (196)
+.++.|++||..|+.+||..|..+ +||+...+..||..|||++.||+|||||||+++|+...
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRN-RYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTC-SSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 456789999999999999999999 99999999999999999999999999999999998653
No 28
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.73 E-value=1.3e-18 Score=121.09 Aligned_cols=60 Identities=32% Similarity=0.658 Sum_probs=56.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHh
Q 029280 22 KMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (196)
Q Consensus 22 ~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq 82 (196)
+++.|++||..|+..||..|..+ +||+...+.+||..+||++.||+|||||||+++|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFN-RYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHC-SSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHHccC-CCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 35779999999999999999999 9999999999999999999999999999999999854
No 29
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.73 E-value=2.2e-18 Score=121.38 Aligned_cols=62 Identities=26% Similarity=0.444 Sum_probs=58.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHh
Q 029280 20 KSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (196)
Q Consensus 20 kk~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq 82 (196)
.+.++.|++||..|+.+||..|..+ +||+...+.+||..+||++.||+|||||||+++|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATN-KFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHT-SCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhC-CCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 3456789999999999999999999 9999999999999999999999999999999999853
No 30
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-18 Score=122.06 Aligned_cols=62 Identities=29% Similarity=0.596 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHh
Q 029280 20 KSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (196)
Q Consensus 20 kk~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq 82 (196)
+++++.|++||..|+.+||..|..+ +||+...+.+||..|||++.||+|||||||+++|++.
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQKT-HYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 4556789999999999999999999 9999999999999999999999999999999999854
No 31
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.73 E-value=1.9e-18 Score=117.05 Aligned_cols=58 Identities=26% Similarity=0.511 Sum_probs=55.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhH
Q 029280 23 MKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSK 81 (196)
Q Consensus 23 rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krk 81 (196)
++.|+.||..|+..||..|..+ +||+...+.+||..+||++.||++||||||+++|+.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKE-NYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 4678999999999999999999 999999999999999999999999999999999973
No 32
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.72 E-value=2.4e-18 Score=115.08 Aligned_cols=56 Identities=38% Similarity=0.516 Sum_probs=53.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHH
Q 029280 23 MKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWK 79 (196)
Q Consensus 23 rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~K 79 (196)
++.|++||..|+.+||..|..+ +||+...+.+||..|||++.||++||||||+++|
T Consensus 3 rr~Rt~~t~~q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 3 RKPRVLFSQAQVYELERRFKQQ-RYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 5678999999999999999999 9999999999999999999999999999999975
No 33
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.72 E-value=3.2e-18 Score=126.58 Aligned_cols=65 Identities=23% Similarity=0.424 Sum_probs=57.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHhhHH
Q 029280 20 KSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQIEH 85 (196)
Q Consensus 20 kk~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq~~~ 85 (196)
...+++|++||..|+.+||..|..+ +||+...+.+||..|||+++||+|||||||+|+|+.++..
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk~ 87 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRT-QWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKW 87 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcccH
Confidence 3345778999999999999999999 9999999999999999999999999999999999976554
No 34
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.72 E-value=2.1e-18 Score=125.47 Aligned_cols=63 Identities=30% Similarity=0.607 Sum_probs=55.1
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHh
Q 029280 19 KKSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (196)
Q Consensus 19 ~kk~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq 82 (196)
.++.++.|++||..|+.+||..|..+ +||+...+.+||..|||+++||+|||||||+++|+.+
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFN-RYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 34456789999999999999999999 9999999999999999999999999999999999853
No 35
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.72 E-value=2.1e-18 Score=123.87 Aligned_cols=61 Identities=30% Similarity=0.553 Sum_probs=54.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHh
Q 029280 21 SKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (196)
Q Consensus 21 k~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq 82 (196)
+.++.|++||..|+.+||..|..+ +||+...+.+||..|||+++||+|||||||+|+|+..
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHTN-HYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCcccCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 446779999999999999999999 9999999999999999999999999999999999853
No 36
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=4.5e-18 Score=119.68 Aligned_cols=59 Identities=24% Similarity=0.514 Sum_probs=55.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHh
Q 029280 23 MKNKRRFSDEQIRLLESIFES-ESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (196)
Q Consensus 23 rr~Rtr~t~eQl~~LE~~F~~-~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq 82 (196)
+++|++||..|+.+||..|.. + +||+...+.+||..+||+++||+|||||||+++|+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~-~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVN-KHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTT-SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 456899999999999999995 9 9999999999999999999999999999999999854
No 37
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=4.2e-18 Score=119.45 Aligned_cols=59 Identities=24% Similarity=0.548 Sum_probs=55.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHh
Q 029280 23 MKNKRRFSDEQIRLLESIFES-ESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (196)
Q Consensus 23 rr~Rtr~t~eQl~~LE~~F~~-~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq 82 (196)
.++|++||..|+.+||..|.. + +||+...+.+||..|||+++||+|||||||+++|+..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~-~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVN-KHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccC-CCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 356899999999999999996 9 9999999999999999999999999999999999854
No 38
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.71 E-value=2.4e-18 Score=119.04 Aligned_cols=61 Identities=30% Similarity=0.506 Sum_probs=57.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHhhH
Q 029280 23 MKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQIE 84 (196)
Q Consensus 23 rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq~~ 84 (196)
+++|++||..|+.+||..|..+ +||+...+..||..+||++.||++||||||+++|+....
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVN-CYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 5679999999999999999999 999999999999999999999999999999999986543
No 39
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.71 E-value=2.6e-18 Score=116.38 Aligned_cols=57 Identities=26% Similarity=0.598 Sum_probs=50.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHh
Q 029280 25 NKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (196)
Q Consensus 25 ~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq 82 (196)
+|++||..|+.+||..|..+ +||+...+.+||..+||++.||++||||||+++|+..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRT-HYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 47999999999999999999 9999999999999999999999999999999999853
No 40
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=3.7e-18 Score=126.34 Aligned_cols=64 Identities=31% Similarity=0.497 Sum_probs=56.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHhhH
Q 029280 20 KSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQIE 84 (196)
Q Consensus 20 kk~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq~~ 84 (196)
.+.++.|++||..|+.+||..|..+ +||+...+.+||..|||+++||+|||||||+++|+...+
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFN-KYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhcc
Confidence 3456779999999999999999999 999999999999999999999999999999999986543
No 41
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.71 E-value=5.1e-18 Score=113.68 Aligned_cols=54 Identities=31% Similarity=0.590 Sum_probs=50.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhH
Q 029280 27 RRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSK 81 (196)
Q Consensus 27 tr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krk 81 (196)
+.||..|+..||..|..+ +||+...+.+||..+||+++||++||||||+|+|+.
T Consensus 2 T~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQ-KYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhc-CCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 679999999999999999 999999999999999999999999999999999974
No 42
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=8.3e-18 Score=120.30 Aligned_cols=58 Identities=22% Similarity=0.350 Sum_probs=54.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHhh
Q 029280 25 NKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQI 83 (196)
Q Consensus 25 ~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq~ 83 (196)
.|++||.+|+.+|+..|..+ +||+..++.+||..+||++.||+|||||||+++|+.+.
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~-~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQC-QWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 36789999999999999999 99999999999999999999999999999999998544
No 43
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=1.2e-17 Score=117.37 Aligned_cols=62 Identities=21% Similarity=0.228 Sum_probs=57.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHhh
Q 029280 21 SKMKNKRRFSDEQIRLLESIFES---ESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQI 83 (196)
Q Consensus 21 k~rr~Rtr~t~eQl~~LE~~F~~---~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq~ 83 (196)
+.++.|++|+..|+.+|+..|.. + +||+...+.+||..+||++.||++||||||+|+|+..+
T Consensus 6 ~~rr~R~~~~~~q~~~Le~~f~~~~~~-~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 6 SGKNKRGVLPKHATNVMRSWLFQHIGH-PYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 44667899999999999999987 7 99999999999999999999999999999999998644
No 44
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-17 Score=117.68 Aligned_cols=60 Identities=13% Similarity=0.264 Sum_probs=56.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHh
Q 029280 22 KMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (196)
Q Consensus 22 ~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq 82 (196)
.++.|+.||.+|+.+||..|..+ +||+...+.+||..+||++.||++||||||+++|+.+
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKN-QFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 35679999999999999999999 9999999999999999999999999999999999854
No 45
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=5.3e-18 Score=121.17 Aligned_cols=63 Identities=22% Similarity=0.415 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhc---CCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHh
Q 029280 20 KSKMKNKRRFSDEQIRLLESIFESE---STKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (196)
Q Consensus 20 kk~rr~Rtr~t~eQl~~LE~~F~~~---~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq 82 (196)
++.++.|+.||.+|+.+||..|..+ ++||+...+.+||..|||++.||+|||||||+|+|+..
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 3456789999999999999999876 28999999999999999999999999999999999854
No 46
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-17 Score=118.19 Aligned_cols=57 Identities=21% Similarity=0.383 Sum_probs=54.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHh
Q 029280 25 NKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (196)
Q Consensus 25 ~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq 82 (196)
+|++||.+|+.+||..|..+ +||+...+.+||..|||+++||+|||||||+++|+..
T Consensus 10 kr~~~t~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 10 KYKERAPEQLRALESSFAQN-PLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp CCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCccCCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 36789999999999999999 9999999999999999999999999999999999854
No 47
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=1.9e-17 Score=122.04 Aligned_cols=63 Identities=21% Similarity=0.347 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhC---------------CCCcceeeeccchhhHHHhHhh
Q 029280 20 KSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELG---------------LQPRQVAIWFQNKRARWKSKQI 83 (196)
Q Consensus 20 kk~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~Lg---------------L~~rQVkvWFQNRRak~Krkq~ 83 (196)
++.++.|+.|++.|+.+||..|..+ +||+...+.+||..|| |++.+|++||||||+++|+++.
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~-~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNEN-QYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 3557789999999999999999999 9999999999999999 9999999999999999998654
No 48
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=9.9e-18 Score=118.79 Aligned_cols=58 Identities=22% Similarity=0.339 Sum_probs=55.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHh
Q 029280 24 KNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (196)
Q Consensus 24 r~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq 82 (196)
+.|++||.+|+.+||..|..+ +||+...+.+||..+||+++||++||||||+++|+..
T Consensus 10 ~~R~~ft~~Ql~~Le~~F~~~-~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 10 IYKNKKSHEQLSALKGSFCRN-QFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHS-SSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCccCCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 458999999999999999999 9999999999999999999999999999999999854
No 49
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.68 E-value=1.4e-17 Score=116.91 Aligned_cols=61 Identities=28% Similarity=0.474 Sum_probs=56.8
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHhhH
Q 029280 23 MKNKRRFSDEQIRLLESIF---ESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQIE 84 (196)
Q Consensus 23 rr~Rtr~t~eQl~~LE~~F---~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq~~ 84 (196)
+++|++||..|+.+|+..| ..+ +||+...+..||..+||++.||++||||||+++|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~-~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSN-PYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccC-CCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 5678999999999999999 888 999999999999999999999999999999999985543
No 50
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=1.3e-17 Score=114.13 Aligned_cols=58 Identities=28% Similarity=0.442 Sum_probs=54.9
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHh
Q 029280 22 KMKNKRRFSDEQIRLLESIF---ESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (196)
Q Consensus 22 ~rr~Rtr~t~eQl~~LE~~F---~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Kr 80 (196)
.++.|++|+..|+.+|+..| ..+ +||+...+.+||..+||++.||++||||||+++|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~-~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSN-PYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 35678999999999999999 888 99999999999999999999999999999999986
No 51
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.67 E-value=3.2e-17 Score=110.87 Aligned_cols=54 Identities=28% Similarity=0.495 Sum_probs=52.6
Q ss_pred CCCCCHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHh
Q 029280 26 KRRFSDEQIRLLESIFES---ESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (196)
Q Consensus 26 Rtr~t~eQl~~LE~~F~~---~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Kr 80 (196)
+++||.+|+.+|+..|.. + +||+...+..||..+||++.||++||||||+++|+
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~-~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIEN-PYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred cCcCCHHHHHHHHHHHHHcCCC-CCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 689999999999999999 8 99999999999999999999999999999999986
No 52
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.67 E-value=1.4e-17 Score=131.99 Aligned_cols=63 Identities=30% Similarity=0.419 Sum_probs=55.5
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhH
Q 029280 18 KKKSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSK 81 (196)
Q Consensus 18 ~~kk~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krk 81 (196)
..++++++|++||..|+..||..|..+ +||+...+.+||..+||+++||+|||||||+|+|++
T Consensus 83 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 83 ANERKRKRRTTISIAAKDALERHFGEH-SKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCcCccHHHHHHHHHHHHHc-CCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 345567789999999999999999999 999999999999999999999999999999999975
No 53
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.66 E-value=4.4e-17 Score=117.89 Aligned_cols=62 Identities=27% Similarity=0.466 Sum_probs=56.9
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHhhHH
Q 029280 23 MKNKRRFSDEQIRLLESIF---ESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQIEH 85 (196)
Q Consensus 23 rr~Rtr~t~eQl~~LE~~F---~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq~~~ 85 (196)
|+.|++|+..|+.+|+..| ..+ +||+...+..||..+||++.||++||||||+|+|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~-~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSN-PYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTS-CCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 5678999999999999999 888 9999999999999999999999999999999999865443
No 54
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.66 E-value=2.3e-17 Score=133.12 Aligned_cols=66 Identities=24% Similarity=0.266 Sum_probs=52.4
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHhhH
Q 029280 18 KKKSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQIE 84 (196)
Q Consensus 18 ~~kk~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq~~ 84 (196)
..++++++|++||..|+.+||..|..+ +||+...+.+||..+||+++||+|||||||+|+|+....
T Consensus 95 ~~~~~rr~Rt~ft~~Ql~~LE~~F~~~-~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 95 AQGRKRKKRTSIEVGVKGALESHFLKC-PKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp -----------CCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred ccccCCCCceeccHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCC
Confidence 345667889999999999999999999 999999999999999999999999999999999986543
No 55
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=5e-17 Score=119.43 Aligned_cols=55 Identities=22% Similarity=0.411 Sum_probs=52.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHh
Q 029280 27 RRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (196)
Q Consensus 27 tr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq 82 (196)
.+||.+|+.+||..|..+ +||+...+.+||..|||+++||+|||||||+|+|++.
T Consensus 16 k~~t~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 16 KEKTAEQLRVLQASFLNS-SVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred ccCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 389999999999999999 9999999999999999999999999999999999854
No 56
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=1.5e-17 Score=117.33 Aligned_cols=58 Identities=19% Similarity=0.343 Sum_probs=54.0
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhH
Q 029280 23 MKNKRRFSDEQIRLLESIF-ESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSK 81 (196)
Q Consensus 23 rr~Rtr~t~eQl~~LE~~F-~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krk 81 (196)
.+.+++++.+|+.+||..| ..+ +||+...+.+||..|||+++||+|||||||+++|+.
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~-~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVT-KYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTC-SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcC-CCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 4557788999999999999 999 999999999999999999999999999999999964
No 57
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.65 E-value=6.8e-17 Score=117.20 Aligned_cols=59 Identities=27% Similarity=0.456 Sum_probs=55.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHh
Q 029280 21 SKMKNKRRFSDEQIRLLESIFES---ESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (196)
Q Consensus 21 k~rr~Rtr~t~eQl~~LE~~F~~---~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Kr 80 (196)
++++.|++|+.+|+.+|+..|.. + +||+...+..||..+||++.||++||||||+|+|.
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~-~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIEN-PYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSS-CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCC-CCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 34556899999999999999999 8 99999999999999999999999999999999873
No 58
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=8.8e-17 Score=117.52 Aligned_cols=56 Identities=20% Similarity=0.325 Sum_probs=52.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHh
Q 029280 26 KRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (196)
Q Consensus 26 Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq 82 (196)
+.+||.+|+.+||..|..+ +||+...+.+||..|||+++||+|||||||+|+|+..
T Consensus 17 ~k~~t~~Ql~~Le~~F~~~-~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLKS-SFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cccCCHHHHHHHHHHHccC-CCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 4459999999999999999 9999999999999999999999999999999998743
No 59
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.65 E-value=4.5e-17 Score=117.37 Aligned_cols=61 Identities=26% Similarity=0.425 Sum_probs=55.5
Q ss_pred CCCCCCCHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHhhHH
Q 029280 24 KNKRRFSDEQIRLLESIFES---ESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQIEH 85 (196)
Q Consensus 24 r~Rtr~t~eQl~~LE~~F~~---~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq~~~ 85 (196)
+.+++|+..|+.+|+..|.. + +||+...+..||..+||++.||++||||||+|+|+.....
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~-~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~~ 67 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIEN-PYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIAP 67 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSS-CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCCH
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccCH
Confidence 34667999999999999999 9 9999999999999999999999999999999999865443
No 60
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.65 E-value=1e-16 Score=115.68 Aligned_cols=62 Identities=21% Similarity=0.302 Sum_probs=56.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhc--CCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHh
Q 029280 21 SKMKNKRRFSDEQIRLLESIFESE--STKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (196)
Q Consensus 21 k~rr~Rtr~t~eQl~~LE~~F~~~--~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq 82 (196)
++++.|++|+.+|+.+|+..|..+ ++||+..++.+||..+||++.||++||||||+|+|+..
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHH
Confidence 345678999999999999999872 39999999999999999999999999999999998744
No 61
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.64 E-value=5.7e-17 Score=130.05 Aligned_cols=61 Identities=20% Similarity=0.347 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhH
Q 029280 20 KSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSK 81 (196)
Q Consensus 20 kk~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krk 81 (196)
.++++.|++||..|+.+||..|..+ +||+...+.+||..+||+++||+|||||||+|+|++
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMEN-QKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 3567789999999999999999999 999999999999999999999999999999999974
No 62
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.64 E-value=8.1e-17 Score=127.83 Aligned_cols=62 Identities=26% Similarity=0.462 Sum_probs=58.1
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHh
Q 029280 18 KKKSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (196)
Q Consensus 18 ~~kk~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Kr 80 (196)
..+++++.|++|+..|+.+||..|..+ +||+...+.+||..+||+++||+|||||||+|+|+
T Consensus 89 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 89 EPSKKRKRRTSFTPQAIEALNAYFEKN-PLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp SCCCCCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 345667889999999999999999999 99999999999999999999999999999999986
No 63
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2e-16 Score=118.87 Aligned_cols=64 Identities=16% Similarity=0.259 Sum_probs=58.8
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHh---------------------CCCCcceeeeccchhhH
Q 029280 19 KKSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATEL---------------------GLQPRQVAIWFQNKRAR 77 (196)
Q Consensus 19 ~kk~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~L---------------------gL~~rQVkvWFQNRRak 77 (196)
.++++|.|++|++.|+.+||..|..+ +||+...|++||..| +|++.+|+|||||||++
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~-~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQ-KNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 34567889999999999999999999 999999999999999 79999999999999999
Q ss_pred HHhHhh
Q 029280 78 WKSKQI 83 (196)
Q Consensus 78 ~Krkq~ 83 (196)
+|+++.
T Consensus 82 ~kr~~~ 87 (102)
T 2da6_A 82 EAFRQK 87 (102)
T ss_dssp HHHHHH
T ss_pred HHHhhH
Confidence 998643
No 64
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.63 E-value=5.2e-17 Score=121.39 Aligned_cols=67 Identities=18% Similarity=0.317 Sum_probs=54.3
Q ss_pred hccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH------------------hC---CCCcceeeeccchh
Q 029280 17 RKKKSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATE------------------LG---LQPRQVAIWFQNKR 75 (196)
Q Consensus 17 ~~~kk~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~------------------Lg---L~~rQVkvWFQNRR 75 (196)
+.+++.++.|+.|+..|+.+||..|..+ +||+...+.+||.. || |++.+|+|||||||
T Consensus 4 ~~~~k~rr~Rt~ft~~Ql~~LE~~F~~~-~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR 82 (99)
T 1lfb_A 4 DPTKKGRRNRFKWGPASQQILFQAYERQ-KNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRR 82 (99)
T ss_dssp ---------CCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCcCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHH
Confidence 3455667889999999999999999999 99999999999999 88 99999999999999
Q ss_pred hHHHhHhhH
Q 029280 76 ARWKSKQIE 84 (196)
Q Consensus 76 ak~Krkq~~ 84 (196)
+++|+++..
T Consensus 83 ~k~k~k~~~ 91 (99)
T 1lfb_A 83 KEEAFRHKL 91 (99)
T ss_dssp HTTSCCC--
T ss_pred HHHHHhchh
Confidence 999886643
No 65
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-16 Score=112.08 Aligned_cols=57 Identities=35% Similarity=0.531 Sum_probs=53.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHhh
Q 029280 26 KRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQI 83 (196)
Q Consensus 26 Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq~ 83 (196)
-..+|..|+..||..|..+ +||+...+.+||..+||+++||+|||||||+|+|+.+.
T Consensus 8 ~~~~t~~ql~~LE~~F~~~-~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 8 HSHMSHTQVIELERKFSHQ-KYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred CCcCCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 3568999999999999999 99999999999999999999999999999999998654
No 66
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.61 E-value=2.5e-16 Score=110.37 Aligned_cols=57 Identities=19% Similarity=0.297 Sum_probs=53.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHH
Q 029280 21 SKMKNKRRFSDEQIRLLESIFES-ESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARW 78 (196)
Q Consensus 21 k~rr~Rtr~t~eQl~~LE~~F~~-~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~ 78 (196)
+++|.|+.|+.+|+.+|+..|+. + +||+...+..||.+|||++++|+|||||||--.
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~~-~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDVG-LYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHHC-SCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhCCCHHHHHHhhccceeee
Confidence 45788999999999999999999 8 999999999999999999999999999999643
No 67
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.61 E-value=3e-16 Score=109.32 Aligned_cols=53 Identities=21% Similarity=0.317 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHh
Q 029280 29 FSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQ 82 (196)
Q Consensus 29 ~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq 82 (196)
-|.+|+..||..|..+ +||+..++.+||..+||+.+||++||||||+++|+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~-~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQS-QFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGG-GSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 4789999999999999 9999999999999999999999999999999999743
No 68
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.6e-16 Score=108.61 Aligned_cols=55 Identities=16% Similarity=0.237 Sum_probs=51.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhH
Q 029280 26 KRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSK 81 (196)
Q Consensus 26 Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krk 81 (196)
+..++..|+..||..|..+ +||+...+.+||..|||+++||+|||||||+|.++.
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALN-AQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISV 61 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCS
T ss_pred CCCccHHHHHHHHHHHhcC-CCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCC
Confidence 3556789999999999999 999999999999999999999999999999998763
No 69
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.59 E-value=1.8e-16 Score=109.86 Aligned_cols=49 Identities=18% Similarity=0.418 Sum_probs=45.7
Q ss_pred HHHHHHHHHHH-hhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHh
Q 029280 31 DEQIRLLESIF-ESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (196)
Q Consensus 31 ~eQl~~LE~~F-~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Kr 80 (196)
+.|+.+||..| ..+ +||+...+.+||.+|||+++||+|||||||+++|+
T Consensus 9 ~~~~~~LE~~F~~~~-~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAIT-KHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTC-SSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcC-CCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 45799999999 457 99999999999999999999999999999999986
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.58 E-value=3.9e-16 Score=124.67 Aligned_cols=60 Identities=23% Similarity=0.460 Sum_probs=56.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhH
Q 029280 21 SKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSK 81 (196)
Q Consensus 21 k~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krk 81 (196)
+++|+|++|+..|+..||..|..+ +||+...+.+||..+||+++||+|||||||+|+|+.
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~~-~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLKS-PKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTTC-SCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHHccC-CCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 456779999999999999999999 999999999999999999999999999999999973
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.58 E-value=3.6e-16 Score=125.31 Aligned_cols=64 Identities=27% Similarity=0.406 Sum_probs=54.7
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHhh
Q 029280 19 KKSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQI 83 (196)
Q Consensus 19 ~kk~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq~ 83 (196)
..+.++.|++||..|+..|+..|..+ +||+...+.+||..|||++.||+|||||||+|+|+...
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKEN-KRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence 34557789999999999999999999 99999999999999999999999999999999997543
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=1.2e-15 Score=106.00 Aligned_cols=60 Identities=23% Similarity=0.319 Sum_probs=50.6
Q ss_pred CCCCHHHHHHHHHHHh---hcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHhhHHHH
Q 029280 27 RRFSDEQIRLLESIFE---SESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQIEHDY 87 (196)
Q Consensus 27 tr~t~eQl~~LE~~F~---~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq~~~e~ 87 (196)
.+|+.+|+.+|+..|. .+ +||+...+.+||..+||++.||++||||||+|+|+......+
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~-pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~~ 65 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTH-PYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSN 65 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-----
T ss_pred CcCCHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHhc
Confidence 4799999999999999 88 999999999999999999999999999999999986665543
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.41 E-value=3.4e-14 Score=117.63 Aligned_cols=62 Identities=16% Similarity=0.287 Sum_probs=53.8
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhC---------------------CCCcceeeeccchhh
Q 029280 18 KKKSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELG---------------------LQPRQVAIWFQNKRA 76 (196)
Q Consensus 18 ~~kk~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~Lg---------------------L~~rQVkvWFQNRRa 76 (196)
..++.||.|+.|++.|+.+|+..|..+ +||+...|.+||..|+ |++.+|++||||||+
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~-~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~ 189 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQ-KNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRK 189 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHH-CCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhh
Confidence 345667889999999999999999999 9999999999999999 999999999999999
Q ss_pred HHHh
Q 029280 77 RWKS 80 (196)
Q Consensus 77 k~Kr 80 (196)
+.|.
T Consensus 190 ~~k~ 193 (194)
T 1ic8_A 190 EEAF 193 (194)
T ss_dssp HCC-
T ss_pred hhhc
Confidence 9874
No 74
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.33 E-value=7.2e-13 Score=97.25 Aligned_cols=57 Identities=19% Similarity=0.327 Sum_probs=52.4
Q ss_pred CCCCHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHhhH
Q 029280 27 RRFSDEQIRLLESIFES---ESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQIE 84 (196)
Q Consensus 27 tr~t~eQl~~LE~~F~~---~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq~~ 84 (196)
.-|+.+++.+|+..|.. + +||+..++.+||..+||++.||++||+|+|.|.++...+
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~n-pYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~ 69 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYN-AYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLR 69 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGG-GSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHH
Confidence 46899999999999988 7 999999999999999999999999999999999875443
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.29 E-value=9.6e-13 Score=110.84 Aligned_cols=61 Identities=15% Similarity=0.310 Sum_probs=53.2
Q ss_pred hccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhC---------------------CCCcceeeeccchh
Q 029280 17 RKKKSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELG---------------------LQPRQVAIWFQNKR 75 (196)
Q Consensus 17 ~~~kk~rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~Lg---------------------L~~rQVkvWFQNRR 75 (196)
..+++.||.|+.|++.|+.+|+..|..+ +||+...|++||..+| |++.+|++||||||
T Consensus 137 ~~~~k~RR~R~~ft~~ql~~Le~~F~~~-~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR 215 (221)
T 2h8r_A 137 PTNKKMRRNRFKWGPASQQILYQAYDRQ-KNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRR 215 (221)
T ss_dssp -----CCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHH
T ss_pred cccCCCCCCCcCCCHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhh
Confidence 3456678899999999999999999999 9999999999999988 88999999999999
Q ss_pred hHH
Q 029280 76 ARW 78 (196)
Q Consensus 76 ak~ 78 (196)
+..
T Consensus 216 ~~~ 218 (221)
T 2h8r_A 216 KEE 218 (221)
T ss_dssp TTC
T ss_pred hhh
Confidence 864
No 76
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.3e-12 Score=91.89 Aligned_cols=46 Identities=13% Similarity=0.453 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhH
Q 029280 31 DEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRAR 77 (196)
Q Consensus 31 ~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak 77 (196)
.+|+.+|+.+|..+ ++|+..++..||..+||+.++|+|||||||+.
T Consensus 14 k~ql~~Lk~yF~~n-~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMN-MEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 57899999999999 99999999999999999999999999999984
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.21 E-value=2.4e-12 Score=113.14 Aligned_cols=54 Identities=35% Similarity=0.596 Sum_probs=51.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHH
Q 029280 25 NKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWK 79 (196)
Q Consensus 25 ~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~K 79 (196)
-++.++..|+..|+..|..+ +||+..+|.+||.++||+++||+|||||||+|+|
T Consensus 368 ~~~~~~~~q~~~Le~~f~~~-~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 368 AAAAISPQARAFLEQVFRRK-QSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHCSSCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhcchHHHHHHHHHhcC-CCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 46789999999999999999 9999999999999999999999999999999876
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.73 E-value=3.7e-10 Score=70.02 Aligned_cols=23 Identities=43% Similarity=1.015 Sum_probs=19.5
Q ss_pred cceeeeccchhhHHHhHhhHHHH
Q 029280 65 RQVAIWFQNKRARWKSKQIEHDY 87 (196)
Q Consensus 65 rQVkvWFQNRRak~Krkq~~~e~ 87 (196)
+||+|||||||+|||+++.+...
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~ 23 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDAR 23 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTT
T ss_pred CCceeccHHHHHHHHHHhHHHHH
Confidence 69999999999999997766443
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.53 E-value=0.043 Score=38.09 Aligned_cols=43 Identities=23% Similarity=0.379 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccc
Q 029280 30 SDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQN 73 (196)
Q Consensus 30 t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQN 73 (196)
++.-...|+.+|... +.+.......|+.+..|+..||+-||-.
T Consensus 14 ~p~~~e~L~~Yy~~h-k~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 14 PPPDIQPLERYWAAH-QQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCCCHHHHHHHHHT-CCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHh-cccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 334468899999999 9999999999999999999999999953
No 80
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=91.02 E-value=0.64 Score=33.34 Aligned_cols=51 Identities=22% Similarity=0.168 Sum_probs=35.6
Q ss_pred hhhHHHhHhhHHHHHHHHHhhHHhhhhhHhHHHHHHHHhHHHHHHHHHHhcccCC
Q 029280 74 KRARWKSKQIEHDYAQLRANYDSLASGFESLIKEKESLLLEQLQMLNEQLGKSDY 128 (196)
Q Consensus 74 RRak~Krkq~~~e~~~lk~~~~~L~~~~~sl~~e~~~L~~~e~~~L~~~~~~~~~ 128 (196)
+|++.++++... .+......|..+|..|+.+...|.. |+..|+.++...+.
T Consensus 28 rrSR~krk~r~~---e~~~r~~~Le~EN~~Lr~~v~~L~~-E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 28 RKSRDKAKMRNL---ETQHKVLELTAENERLQKKVEQLSR-ELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC---
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCcH
Confidence 355666554443 3455667788888999999999999 99999998766443
No 81
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=88.36 E-value=0.94 Score=31.81 Aligned_cols=48 Identities=23% Similarity=0.223 Sum_probs=33.0
Q ss_pred hhhHHHhHhhHHHHHHHHHhhHHhhhhhHhHHHHHHHHhHHHHHHHHHHhcc
Q 029280 74 KRARWKSKQIEHDYAQLRANYDSLASGFESLIKEKESLLLEQLQMLNEQLGK 125 (196)
Q Consensus 74 RRak~Krkq~~~e~~~lk~~~~~L~~~~~sl~~e~~~L~~~e~~~L~~~~~~ 125 (196)
+|++.|+++...+ +......|..+|..|+.+...|.. |+..|+.++..
T Consensus 28 krSR~krk~r~~e---~~~r~~~L~~eN~~L~~~v~~L~~-E~~~Lr~ll~q 75 (78)
T 1gu4_A 28 RKSRDKAKMRNLE---TQHKVLELTAENERLQKKVEQLSR-ELSTLRNLFKQ 75 (78)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTTC-
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3556665544443 345567778888888888888888 88888887654
No 82
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=87.70 E-value=2.1 Score=28.57 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhHHhhhhhHhHHHHHHHHhHHHHHHHHHHhc
Q 029280 84 EHDYAQLRANYDSLASGFESLIKEKESLLLEQLQMLNEQLG 124 (196)
Q Consensus 84 ~~e~~~lk~~~~~L~~~~~sl~~e~~~L~~~e~~~L~~~~~ 124 (196)
......+......|...|..|..+...|.. |+..|+.+|.
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~-E~~~Lk~ll~ 61 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAK-EIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 344556777788888888899999999988 8999988764
No 83
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=85.10 E-value=4.1 Score=26.68 Aligned_cols=38 Identities=21% Similarity=0.057 Sum_probs=30.1
Q ss_pred HHHHHHHhhHHhhhhhHhHHHHHHHHhHHHHHHHHHHhc
Q 029280 86 DYAQLRANYDSLASGFESLIKEKESLLLEQLQMLNEQLG 124 (196)
Q Consensus 86 e~~~lk~~~~~L~~~~~sl~~e~~~L~~~e~~~L~~~~~ 124 (196)
....|....+.|...+..|..+...|.. ++..|+.+|.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~-e~~~Lk~~ll 60 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRN-EVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhc
Confidence 4456677778888888888888888888 8888888764
No 84
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=83.13 E-value=0.5 Score=33.05 Aligned_cols=42 Identities=24% Similarity=0.436 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHHHHHh-h-cCCCCCHHHHHHHHHHhCCCCcceeeeccc
Q 029280 26 KRRFSDEQIRLLESIFE-S-ESTKLEPRKKMQVATELGLQPRQVAIWFQN 73 (196)
Q Consensus 26 Rtr~t~eQl~~LE~~F~-~-~~~~p~~~~r~eLA~~LgL~~rQVkvWFQN 73 (196)
|..||+++....-..+. . . ....++|..+||++..|..|...
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g------~s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDG------ASLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGG------SCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC------ChHHHHHHHHCcCHHHHHHHHHH
Confidence 45788887765555553 2 2 23668999999999999999754
No 85
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=82.87 E-value=5.3 Score=26.38 Aligned_cols=39 Identities=26% Similarity=0.187 Sum_probs=30.0
Q ss_pred HHHHHHHHhhHHhhhhhHhHHHHHHHHhHHHHHHHHHHhc
Q 029280 85 HDYAQLRANYDSLASGFESLIKEKESLLLEQLQMLNEQLG 124 (196)
Q Consensus 85 ~e~~~lk~~~~~L~~~~~sl~~e~~~L~~~e~~~L~~~~~ 124 (196)
.....|....+.|...+..|..+...|.. ++..|..+|.
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~-e~~~Lk~~l~ 61 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLK-EKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 34456677778888888888888888888 8888888764
No 86
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=77.65 E-value=1.6 Score=30.12 Aligned_cols=44 Identities=14% Similarity=0.221 Sum_probs=31.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeecc
Q 029280 23 MKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQ 72 (196)
Q Consensus 23 rr~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQ 72 (196)
++.+..|+.++....-..+... ....++|+.+|+++..|..|..
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g------~s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG------ESKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT------CCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC------CCHHHHHHHHCcCHHHHHHHHH
Confidence 3456789998866555556433 1356889999999999988863
No 87
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=75.90 E-value=4.3 Score=27.07 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=22.0
Q ss_pred HhhHHhhhhhHhHHHHHHHHhHHHHHHHHHHhc
Q 029280 92 ANYDSLASGFESLIKEKESLLLEQLQMLNEQLG 124 (196)
Q Consensus 92 ~~~~~L~~~~~sl~~e~~~L~~~e~~~L~~~~~ 124 (196)
.....|......|..++..|.. ++..|+.+|.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~-ev~~Lr~~l~ 61 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLEN-EVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 3345566666777788888888 8888887764
No 88
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=75.73 E-value=1.7 Score=27.67 Aligned_cols=45 Identities=16% Similarity=0.279 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeecc
Q 029280 26 KRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQ 72 (196)
Q Consensus 26 Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQ 72 (196)
+..|+++....+...+... . .......++|..+||++..|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~g-~-s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-N-DCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-T-TTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC-C-CcchHHHHHHHHHCcCHHHHHHHHH
Confidence 5679998877665555443 2 2112256899999999999999974
No 89
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=75.71 E-value=4.4 Score=26.62 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=19.0
Q ss_pred HHHHHhhHHhhhhhHhHHHHHHHHhHHHHHHHHHHhc
Q 029280 88 AQLRANYDSLASGFESLIKEKESLLLEQLQMLNEQLG 124 (196)
Q Consensus 88 ~~lk~~~~~L~~~~~sl~~e~~~L~~~e~~~L~~~~~ 124 (196)
..|......|...+..|..+...|.. ++..|+.+|.
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~L~~-e~~~Lk~~l~ 60 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANMLRE-QVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 44455556666666666666666666 6665555543
No 90
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=75.62 E-value=5.1 Score=23.73 Aligned_cols=29 Identities=14% Similarity=0.248 Sum_probs=23.2
Q ss_pred HhhhhhHhHHHHHHHHhHHHHHHHHHHhcc
Q 029280 96 SLASGFESLIKEKESLLLEQLQMLNEQLGK 125 (196)
Q Consensus 96 ~L~~~~~sl~~e~~~L~~~e~~~L~~~~~~ 125 (196)
.|-...+.|..+|..|.. +|.+|+++|..
T Consensus 5 QLE~kVEeLl~~n~~Le~-eV~rLk~ll~~ 33 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEX-EVXRLKXLVXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhhhHHH-HHHHHHHHHhc
Confidence 455567788888999999 99999998853
No 91
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=72.67 E-value=12 Score=25.58 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=24.3
Q ss_pred HHHHHHHHhhHHhhhhhHhHHHHHHHHhHHHHHHHHHHhc
Q 029280 85 HDYAQLRANYDSLASGFESLIKEKESLLLEQLQMLNEQLG 124 (196)
Q Consensus 85 ~e~~~lk~~~~~L~~~~~sl~~e~~~L~~~e~~~L~~~~~ 124 (196)
.....|......|...+..+..|+..|.. ++..|...+.
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~-~i~~L~~El~ 67 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQ-KVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 34444555556666666666777777777 7777766553
No 92
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=71.19 E-value=6 Score=23.33 Aligned_cols=29 Identities=21% Similarity=0.317 Sum_probs=23.0
Q ss_pred HhhhhhHhHHHHHHHHhHHHHHHHHHHhcc
Q 029280 96 SLASGFESLIKEKESLLLEQLQMLNEQLGK 125 (196)
Q Consensus 96 ~L~~~~~sl~~e~~~L~~~e~~~L~~~~~~ 125 (196)
.|-...+.|..+|..|.. |+.+|++++..
T Consensus 4 QLE~kVEeLl~~n~~Le~-EV~RLk~Ll~~ 32 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLEN-EVARLKKLVGE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhHHHHH-HHHHHHHHhhc
Confidence 345567788888999999 99999998753
No 93
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=70.96 E-value=7.5 Score=22.85 Aligned_cols=29 Identities=7% Similarity=0.091 Sum_probs=22.5
Q ss_pred HhhhhhHhHHHHHHHHhHHHHHHHHHHhcc
Q 029280 96 SLASGFESLIKEKESLLLEQLQMLNEQLGK 125 (196)
Q Consensus 96 ~L~~~~~sl~~e~~~L~~~e~~~L~~~~~~ 125 (196)
.|-...+.|..++..|.. ||.+|+++|..
T Consensus 4 QLEdKvEeLl~~~~~Le~-EV~RLk~lL~~ 32 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXEN-XLARIKXLLXE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhhHHHH-HHHHHHHHHcc
Confidence 345566778888999999 99999998853
No 94
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=70.67 E-value=7.7 Score=25.04 Aligned_cols=32 Identities=13% Similarity=0.219 Sum_probs=21.2
Q ss_pred HhhHHhhhhhHhHHHHHHHHhHHHHHHHHHHhc
Q 029280 92 ANYDSLASGFESLIKEKESLLLEQLQMLNEQLG 124 (196)
Q Consensus 92 ~~~~~L~~~~~sl~~e~~~L~~~e~~~L~~~~~ 124 (196)
..++.|+.++..|+.....|.. +++.|+..|.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~-~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVE-ENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 4556666666666666667777 7777776665
No 95
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=69.02 E-value=4.9 Score=29.03 Aligned_cols=49 Identities=20% Similarity=0.334 Sum_probs=36.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhH
Q 029280 25 NKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRAR 77 (196)
Q Consensus 25 ~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak 77 (196)
.|.+||.++...+-..+... ..+. ..+||+.+|++...|..|..++...
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~-g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEEN-PDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHC-TTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHC-CCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 46789999987777777545 4333 2368999999999999998776553
No 96
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=68.91 E-value=8.8 Score=22.69 Aligned_cols=29 Identities=7% Similarity=0.113 Sum_probs=22.6
Q ss_pred HhhhhhHhHHHHHHHHhHHHHHHHHHHhcc
Q 029280 96 SLASGFESLIKEKESLLLEQLQMLNEQLGK 125 (196)
Q Consensus 96 ~L~~~~~sl~~e~~~L~~~e~~~L~~~~~~ 125 (196)
.|-...+.|..++..|.. ||.+|+++|..
T Consensus 5 QLEdKVEeLl~~~~~Le~-EV~RLk~ll~~ 33 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXEN-EXARIXKLLXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHC-
T ss_pred HHHHHHHHHHhhhhHHHH-HHHHHHHHHhc
Confidence 345566778888999999 99999998853
No 97
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=63.69 E-value=3.9 Score=23.63 Aligned_cols=41 Identities=7% Similarity=0.195 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccc
Q 029280 27 RRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQN 73 (196)
Q Consensus 27 tr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQN 73 (196)
..++.++...+...+... . ...++|..+|++...|..|...
T Consensus 4 ~~l~~~~~~~i~~~~~~g---~---s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLLN---V---SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCCHHHHHHHHHHHHTT---C---CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHcC---C---CHHHHHHHHCcCHHHHHHHHhh
Confidence 356777775555556444 2 3568999999999999888753
No 98
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=62.80 E-value=13 Score=22.26 Aligned_cols=30 Identities=17% Similarity=0.128 Sum_probs=23.4
Q ss_pred HHhhhhhHhHHHHHHHHhHHHHHHHHHHhcc
Q 029280 95 DSLASGFESLIKEKESLLLEQLQMLNEQLGK 125 (196)
Q Consensus 95 ~~L~~~~~sl~~e~~~L~~~e~~~L~~~~~~ 125 (196)
..|....+.|..++..|.. +|.+|+.++..
T Consensus 4 nQLE~KVEeLl~~~~~Le~-eV~RLk~ll~~ 33 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKN-KVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHH-HHHHHHHHhcc
Confidence 3455667788888889988 99999988753
No 99
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=61.39 E-value=13 Score=22.01 Aligned_cols=28 Identities=14% Similarity=0.360 Sum_probs=21.9
Q ss_pred HhhhhhHhHHHHHHHHhHHHHHHHHHHhc
Q 029280 96 SLASGFESLIKEKESLLLEQLQMLNEQLG 124 (196)
Q Consensus 96 ~L~~~~~sl~~e~~~L~~~e~~~L~~~~~ 124 (196)
.|-...+.|..++..|.. ||.+|+++|.
T Consensus 5 QLEdKvEeLl~~~~~L~~-EV~RLk~lL~ 32 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICN-ELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHC-
T ss_pred HHHHHHHHHHHccHHHHH-HHHHHHHHhc
Confidence 345566778888999999 9999999875
No 100
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=58.82 E-value=17 Score=21.77 Aligned_cols=29 Identities=17% Similarity=0.144 Sum_probs=23.0
Q ss_pred HhhhhhHhHHHHHHHHhHHHHHHHHHHhcc
Q 029280 96 SLASGFESLIKEKESLLLEQLQMLNEQLGK 125 (196)
Q Consensus 96 ~L~~~~~sl~~e~~~L~~~e~~~L~~~~~~ 125 (196)
.|-...+.|..++..|.. +|.+|+.++..
T Consensus 5 QLE~kVEeLl~~~~~Le~-EV~RL~~ll~~ 33 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLEN-EVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHH-HHHHHHHHhcc
Confidence 455667788888889998 99999988753
No 101
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=58.32 E-value=5.4 Score=27.35 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHH
Q 029280 28 RFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWK 79 (196)
Q Consensus 28 r~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~K 79 (196)
.+++.+..+|...|-.. ..-.++|..+|++...|+.....-|.+.|
T Consensus 37 ~L~~~~r~vl~l~~~~g------~s~~eIA~~lgis~~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG------WSTAQIATDLGIAEGTVKSRLHYAVRALR 82 (92)
T ss_dssp TSCHHHHHHHHHHHTSC------CCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 46777777777765544 24568999999999999876654443333
No 102
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=58.13 E-value=18 Score=21.34 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=22.3
Q ss_pred HhhhhhHhHHHHHHHHhHHHHHHHHHHhcc
Q 029280 96 SLASGFESLIKEKESLLLEQLQMLNEQLGK 125 (196)
Q Consensus 96 ~L~~~~~sl~~e~~~L~~~e~~~L~~~~~~ 125 (196)
.|-...+.|..++..|.. ||.+|+++|..
T Consensus 5 QLEdKVEeLl~~n~~Le~-EV~RLk~LL~~ 33 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIEN-ELARIKKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhHHHHH-HHHHHHHHHcc
Confidence 344566778888888888 99999988753
No 103
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=55.85 E-value=3.4 Score=24.39 Aligned_cols=41 Identities=12% Similarity=0.249 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccch
Q 029280 28 RFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNK 74 (196)
Q Consensus 28 r~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNR 74 (196)
.++.++...+...+... . ...+||..+|++...|..|+...
T Consensus 5 ~~~~~~~~~i~~l~~~g---~---s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG---H---PRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp SSCTTHHHHHHHHHHTT---C---CHHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCCHHHHHHHHHHHHcC---C---CHHHHHHHHCCCHHHHHHHHHHc
Confidence 45566655555555433 2 35689999999999999888643
No 104
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=53.75 E-value=40 Score=21.56 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=23.7
Q ss_pred HhhHHhhhhhHhHHHHHHHHhHHHHHHHHHHhc
Q 029280 92 ANYDSLASGFESLIKEKESLLLEQLQMLNEQLG 124 (196)
Q Consensus 92 ~~~~~L~~~~~sl~~e~~~L~~~e~~~L~~~~~ 124 (196)
...+.|......|..|+..|.. ++..|+..+.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~-~~~~L~~~~~ 53 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIE-ELKALKDLYS 53 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhc
Confidence 4456666677778888888888 8888876653
No 105
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=52.87 E-value=24 Score=20.78 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=22.1
Q ss_pred HhhhhhHhHHHHHHHHhHHHHHHHHHHhc
Q 029280 96 SLASGFESLIKEKESLLLEQLQMLNEQLG 124 (196)
Q Consensus 96 ~L~~~~~sl~~e~~~L~~~e~~~L~~~~~ 124 (196)
.|....+.|..+|..|.. +|.+|+.++.
T Consensus 5 QLEdkVEeLl~~~~~Le~-eV~RL~~ll~ 32 (34)
T 2hy6_A 5 QLADAVEELASANYHLAN-AVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHH-HHHHHHHHhc
Confidence 455566778888888888 9999998875
No 106
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=52.05 E-value=6.2 Score=25.03 Aligned_cols=44 Identities=11% Similarity=-0.027 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhH
Q 029280 28 RFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRAR 77 (196)
Q Consensus 28 r~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak 77 (196)
.+++.+..+|...|-.. ..-.++|..+|+++..|..+...-+.+
T Consensus 15 ~L~~~~r~il~l~~~~g------~s~~eIA~~lgis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG------LSYADAAAVCGCPVGTIRSRVARARDA 58 (70)
T ss_dssp SSCHHHHHHHHHHHTSC------CCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 57888888888876544 235689999999999988766543333
No 107
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=51.27 E-value=23 Score=25.62 Aligned_cols=47 Identities=15% Similarity=0.273 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHh
Q 029280 28 RFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (196)
Q Consensus 28 r~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Kr 80 (196)
.+++.+..++...|... ..-.++|..+|+++..|+.+...-|.+-++
T Consensus 22 ~L~~~~r~vl~l~y~~g------~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD------YSLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHTC------CCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 57888888888876655 235689999999999999888655554443
No 108
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=51.20 E-value=23 Score=24.03 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=25.8
Q ss_pred HhhHHHHHHHHHhhHHhhhhhHhHHHHHHHHhHHHHHHH
Q 029280 81 KQIEHDYAQLRANYDSLASGFESLIKEKESLLLEQLQML 119 (196)
Q Consensus 81 kq~~~e~~~lk~~~~~L~~~~~sl~~e~~~L~~~e~~~L 119 (196)
+.++.....+...+..|..++..|+.+...|.. ++..|
T Consensus 32 ~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~-El~~l 69 (70)
T 1gd2_E 32 KALETQVVTLKELHSSTTLENDQLRQKVRQLEE-ELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH-HHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHc
Confidence 345555566666677777777777777777777 66554
No 109
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=50.64 E-value=33 Score=24.27 Aligned_cols=46 Identities=24% Similarity=0.277 Sum_probs=24.2
Q ss_pred HHhHhhHHHHHHHHHhhHHhhhhhHhHHHHHHHHhHHHHHHHHHHhc
Q 029280 78 WKSKQIEHDYAQLRANYDSLASGFESLIKEKESLLLEQLQMLNEQLG 124 (196)
Q Consensus 78 ~Krkq~~~e~~~lk~~~~~L~~~~~sl~~e~~~L~~~e~~~L~~~~~ 124 (196)
.+-..+......|..++..|......|..|...|.. -+.++.+.+.
T Consensus 36 ~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~-ll~~~p~~~~ 81 (87)
T 1hjb_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN-LFKQLPEPLL 81 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCcHHHh
Confidence 344455555666666666666666666666666666 5555555443
No 110
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=49.37 E-value=18 Score=26.05 Aligned_cols=47 Identities=11% Similarity=0.116 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHh
Q 029280 28 RFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKS 80 (196)
Q Consensus 28 r~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Kr 80 (196)
.+++.+..++...|-.. ..-.++|..+|+++..|+.+...-|.+.+.
T Consensus 25 ~L~~~~r~vl~l~~~~g------~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED------YSLSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp GSCHHHHHHHHHHHTSC------CCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 47788888888776555 235689999999999998877655544443
No 111
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=48.07 E-value=23 Score=22.75 Aligned_cols=32 Identities=19% Similarity=0.405 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhHHhhhhhHhHHHHHHHHhHHHH
Q 029280 84 EHDYAQLRANYDSLASGFESLIKEKESLLLEQL 116 (196)
Q Consensus 84 ~~e~~~lk~~~~~L~~~~~sl~~e~~~L~~~e~ 116 (196)
..+...|+.++..|+..+..|..++..|.. .+
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~-~l 49 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKA-KL 49 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 356777888888888888888888777766 44
No 112
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=46.84 E-value=15 Score=27.51 Aligned_cols=39 Identities=28% Similarity=0.621 Sum_probs=25.8
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHhhHHHH
Q 029280 34 IRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQIEHDY 87 (196)
Q Consensus 34 l~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq~~~e~ 87 (196)
+.++.-.|+.+ +||.+.-- +|-+ .|||.+|+.++.+...
T Consensus 15 vRiIkiLyQSN-PyP~peGT-----------RqaR---RNRRRRWR~RQrQI~~ 53 (115)
T 2x7l_M 15 VRLIKFLYQSN-PPPNPEGT-----------RQAR---RNRRRRWRERQRQIHS 53 (115)
T ss_dssp HHHHHHHHHSS-CCCCCCCC-----------TTTH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccC-CCCCCCCc-----------hhhh---HhHHHHHHHHHHHHHH
Confidence 34556669999 99987521 1111 6999999987766543
No 113
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=45.11 E-value=56 Score=22.89 Aligned_cols=36 Identities=22% Similarity=0.328 Sum_probs=16.1
Q ss_pred HHHHHHHhhHHhhhhhHhHHHHHHHHhHHHHHHHHHH
Q 029280 86 DYAQLRANYDSLASGFESLIKEKESLLLEQLQMLNEQ 122 (196)
Q Consensus 86 e~~~lk~~~~~L~~~~~sl~~e~~~L~~~e~~~L~~~ 122 (196)
+...|+..+..|..++..+......|.. ++.+|+..
T Consensus 28 EieELKekN~~L~~e~~e~~~~~~~L~~-en~qLk~E 63 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQHQREELER-ENNHLKEQ 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHH
Confidence 3444444444444444443333333544 55555443
No 114
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=44.65 E-value=22 Score=24.49 Aligned_cols=38 Identities=29% Similarity=0.622 Sum_probs=25.4
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHHhHhhHHH
Q 029280 34 IRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQIEHD 86 (196)
Q Consensus 34 l~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~Krkq~~~e 86 (196)
+.++.-.|+.+ +||.+.--.. |. .|||.+|+.+|.+..
T Consensus 18 vRiIkiLyQSN-P~P~p~GTrq-aR-------------RNRRRRWR~RQrQI~ 55 (72)
T 3lph_A 18 VRLIKFLYQSN-PPPNPEGTRQ-AR-------------RNRRRRWRERQRQIH 55 (72)
T ss_dssp HHHHHHHHHTC-CCCCCCSCHH-HH-------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccC-CCCCCCCchH-HH-------------HHHHHHHHHHHHHHH
Confidence 45566679999 9998752211 11 589999998766554
No 115
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=44.10 E-value=41 Score=19.67 Aligned_cols=27 Identities=11% Similarity=0.024 Sum_probs=21.1
Q ss_pred hhhhhHhHHHHHHHHhHHHHHHHHHHhc
Q 029280 97 LASGFESLIKEKESLLLEQLQMLNEQLG 124 (196)
Q Consensus 97 L~~~~~sl~~e~~~L~~~e~~~L~~~~~ 124 (196)
|-...+.|..++..|.. |+.+|+.++.
T Consensus 5 LEdKVEell~~~~~le~-EV~Rl~~ll~ 31 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTN-EIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHC
T ss_pred HHHHHHHHHHhhHHHHH-HHHHHHHHhc
Confidence 44556677788888888 9999998875
No 116
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=43.79 E-value=47 Score=23.69 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=24.3
Q ss_pred HHHHHHHhhHHhhhhhHhHHHHHHHHhHHHHHHHHHHhcc
Q 029280 86 DYAQLRANYDSLASGFESLIKEKESLLLEQLQMLNEQLGK 125 (196)
Q Consensus 86 e~~~lk~~~~~L~~~~~sl~~e~~~L~~~e~~~L~~~~~~ 125 (196)
....|..+...|..+.+.|..|+..+.. +...++..++.
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~~~-e~d~~k~k~~~ 87 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRLAR-ERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3445556666666666666777776666 66666665543
No 117
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=43.04 E-value=64 Score=20.69 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=19.0
Q ss_pred HHhhHHhhhhhHhHHHHHHHHhHHHHHHHHHHh
Q 029280 91 RANYDSLASGFESLIKEKESLLLEQLQMLNEQL 123 (196)
Q Consensus 91 k~~~~~L~~~~~sl~~e~~~L~~~e~~~L~~~~ 123 (196)
+.....|......|..++..|.. ++..|+..+
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~-~i~~L~~e~ 52 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQS-EVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 44455556666666666666666 666666554
No 118
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=40.76 E-value=14 Score=26.74 Aligned_cols=41 Identities=20% Similarity=0.145 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchh
Q 029280 28 RFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKR 75 (196)
Q Consensus 28 r~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRR 75 (196)
.+++.+..+|. .|-.. ..-.++|..+|+++..|+.....-|
T Consensus 109 ~L~~~~r~v~~-~~~~g------~s~~EIA~~lgis~~tV~~~~~ra~ 149 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRG------YSYREIATILSKNLKSIDNTIQRIR 149 (164)
T ss_dssp HSCHHHHHHHH-HHTTT------CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcC------CCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46666666776 44333 2456899999999999977664333
No 119
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=40.04 E-value=51 Score=19.40 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=21.9
Q ss_pred HhhhhhHhHHHHHHHHhHHHHHHHHHHhc
Q 029280 96 SLASGFESLIKEKESLLLEQLQMLNEQLG 124 (196)
Q Consensus 96 ~L~~~~~sl~~e~~~L~~~e~~~L~~~~~ 124 (196)
.|....+.+..++..|.. |+.+|+.+|.
T Consensus 5 QledKvEel~~~~~~l~n-Ev~Rl~~lLg 32 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNAN-ELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHH-HHHHHHHHhc
Confidence 345566777888888888 9999998875
No 120
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=39.93 E-value=15 Score=25.41 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHH
Q 029280 27 RRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWK 79 (196)
Q Consensus 27 tr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~K 79 (196)
..+++.+..+|...+.-. .-.++|..+|+++..|+....+-+.+.+
T Consensus 26 ~~Lt~~e~~vl~l~~~g~-------s~~eIA~~l~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGL-------TNKQIADRMFLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp -CCCHHHHHHHHHHHTTC-------CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHcCC-------CHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 468999999998864433 3468999999999998876654444333
No 121
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=39.80 E-value=15 Score=24.92 Aligned_cols=46 Identities=7% Similarity=0.087 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHh----hcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHH
Q 029280 28 RFSDEQIRLLESIFE----SESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWK 79 (196)
Q Consensus 28 r~t~eQl~~LE~~F~----~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~K 79 (196)
.+++.+..+|...|- .. ..-.++|..+|+++..|+.+...-+.+-+
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~------~s~~EIA~~lgis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKP------KTLEEVGQYFNVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSC------CCHHHHHHHHTCCHHHHHHHHHHHHHHHB
T ss_pred hCCHHHHHHHHHHHccCCCCC------CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 478888889888875 33 24568999999999999876654333333
No 122
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=38.77 E-value=24 Score=24.50 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHHHHhhc-CCCCC-HHHHHHHHHHhCCCCcceeeecc
Q 029280 26 KRRFSDEQIRLLESIFESE-STKLE-PRKKMQVATELGLQPRQVAIWFQ 72 (196)
Q Consensus 26 Rtr~t~eQl~~LE~~F~~~-~~~p~-~~~r~eLA~~LgL~~rQVkvWFQ 72 (196)
+.+||+++....-..+... ..+++ .....++|..+||++..|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 4578998876554444322 01122 13567899999999999988864
No 123
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=38.49 E-value=15 Score=23.87 Aligned_cols=41 Identities=12% Similarity=0.160 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHHh----hcCCCCCHHHHHHHHHHhCCCCcceeeeccc
Q 029280 27 RRFSDEQIRLLESIFE----SESTKLEPRKKMQVATELGLQPRQVAIWFQN 73 (196)
Q Consensus 27 tr~t~eQl~~LE~~F~----~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQN 73 (196)
..+++.+..+|...|- .. ..-.++|..+|+++..|+.+...
T Consensus 9 ~~L~~~er~il~l~~~l~~~~~------~s~~eIA~~l~is~~tV~~~~~r 53 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDGRE------HTLEEVGAYFGVTRERIRQIENK 53 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSC------CCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhcccCCC------CCHHHHHHHHCCCHHHHHHHHHH
Confidence 3578899999998885 33 23468999999999998876543
No 124
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=37.45 E-value=26 Score=24.71 Aligned_cols=43 Identities=14% Similarity=0.150 Sum_probs=33.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchh
Q 029280 26 KRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKR 75 (196)
Q Consensus 26 Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRR 75 (196)
...+|+.+..+|...+.-. .-.++|..+|+++..|+....+=+
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~-------s~~EIA~~L~iS~~TV~~~l~ri~ 74 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF-------LVTEIAKKLNRSIKTISSQKKSAM 74 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC-------CHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC-------CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 5679999999998865433 347899999999999987665433
No 125
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=36.34 E-value=12 Score=24.01 Aligned_cols=44 Identities=7% Similarity=0.132 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccc
Q 029280 28 RFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQN 73 (196)
Q Consensus 28 r~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQN 73 (196)
.+++.+..+|...|... .+ ....-.++|..+|+++..|+.+...
T Consensus 5 ~L~~~er~il~l~~~l~-~~-~g~s~~eIA~~lgis~~tV~~~~~r 48 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGID-MN-TDYTLEEVGKQFDVTRERIRQIEAK 48 (68)
T ss_dssp CCCHHHHHHHHHHTTTT-SS-SCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHccC-CC-CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 47888999998888321 00 0123568999999999998876543
No 126
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=36.19 E-value=18 Score=23.03 Aligned_cols=45 Identities=18% Similarity=0.284 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhH
Q 029280 26 KRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRAR 77 (196)
Q Consensus 26 Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak 77 (196)
-..+++.+..+|...+ .. + .-.++|..+|+++..|..+..+-+.+
T Consensus 9 ~~~L~~~e~~il~~~~-~g--~----s~~eIA~~l~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 9 KPLLTKREREVFELLV-QD--K----TTKEIASELFISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCCHHHHHHHHHHT-TT--C----CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-cC--C----CHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4578999999998843 22 1 34689999999999888766543333
No 127
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=36.17 E-value=95 Score=21.34 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=27.3
Q ss_pred HHHHhhHHhhhhhHhHHHHHHHHhHHHHHHHHHHhccc
Q 029280 89 QLRANYDSLASGFESLIKEKESLLLEQLQMLNEQLGKS 126 (196)
Q Consensus 89 ~lk~~~~~L~~~~~sl~~e~~~L~~~e~~~L~~~~~~~ 126 (196)
.-+.....+......|..||..|.. ++..|...+..-
T Consensus 33 krk~r~~e~~~r~~~L~~eN~~L~~-~v~~L~~E~~~L 69 (78)
T 1gu4_A 33 KAKMRNLETQHKVLELTAENERLQK-KVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3345556677777888888888888 888888877653
No 128
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=36.00 E-value=99 Score=21.71 Aligned_cols=30 Identities=20% Similarity=0.096 Sum_probs=17.5
Q ss_pred hhHHhhhhhHhHHHHHHHHhHHHHHHHHHHh
Q 029280 93 NYDSLASGFESLIKEKESLLLEQLQMLNEQL 123 (196)
Q Consensus 93 ~~~~L~~~~~sl~~e~~~L~~~e~~~L~~~~ 123 (196)
++..|......+..|+..|+. ++..|+.+.
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~-en~eL~ela 76 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKK-ENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 345555555556666666666 666666554
No 129
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=35.31 E-value=13 Score=24.98 Aligned_cols=46 Identities=11% Similarity=0.181 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHH
Q 029280 26 KRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARW 78 (196)
Q Consensus 26 Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~ 78 (196)
-..+++.+..+|..++.-. .-.++|..+|++...|+....+-+.+.
T Consensus 19 ~~~Lt~~e~~vl~l~~~g~-------s~~eIA~~l~is~~tV~~~l~r~~~kL 64 (82)
T 1je8_A 19 VNQLTPRERDILKLIAQGL-------PNKMIARRLDITESTVKVHVKHMLKKM 64 (82)
T ss_dssp GGGSCHHHHHHHHHHTTTC-------CHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HccCCHHHHHHHHHHHcCC-------CHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4568999999998853322 456899999999999987665444433
No 130
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=35.19 E-value=22 Score=23.07 Aligned_cols=42 Identities=7% Similarity=0.034 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhh
Q 029280 27 RRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRA 76 (196)
Q Consensus 27 tr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRa 76 (196)
..++.+.+..+....... ..+||..+|+++..|..|-.+++.
T Consensus 9 ~~~~g~~lr~~R~~~glt--------q~elA~~~gvs~~tis~~E~G~~~ 50 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSLT--------QKEASEIFGGGVNAFSRYEKGNAX 50 (73)
T ss_dssp CCCCHHHHHHHHHHTTCC--------HHHHHHHHCSCTTHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHHHcCCC--------HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 468888888887655544 578999999999999999887653
No 131
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=35.09 E-value=41 Score=21.59 Aligned_cols=33 Identities=15% Similarity=0.345 Sum_probs=20.2
Q ss_pred HHHHhhHHhhhhhHhHHHHHHHHhHHHHHHHHHH
Q 029280 89 QLRANYDSLASGFESLIKEKESLLLEQLQMLNEQ 122 (196)
Q Consensus 89 ~lk~~~~~L~~~~~sl~~e~~~L~~~e~~~L~~~ 122 (196)
......+.+....+.+..|+..|.. ++..|+..
T Consensus 24 EVD~FLd~v~~~~~~l~~e~~~L~~-~~~~l~~~ 56 (57)
T 2wuj_A 24 EVNEFLAQVRKDYEIVLRKKTELEA-KVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhc
Confidence 3455566677777777777777777 77766654
No 132
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=34.42 E-value=36 Score=25.31 Aligned_cols=47 Identities=11% Similarity=0.266 Sum_probs=34.5
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhcCCCCCHHHHHHHHH----Hh--CCCCcceeeeccc
Q 029280 23 MKNKRRFSDEQIRLLESIF-ESESTKLEPRKKMQVAT----EL--GLQPRQVAIWFQN 73 (196)
Q Consensus 23 rr~Rtr~t~eQl~~LE~~F-~~~~~~p~~~~r~eLA~----~L--gL~~rQVkvWFQN 73 (196)
++.|.++|.+|-..+-..+ ..+ +..+.. +||. .+ +++...|..|..|
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~-~~~~q~---~la~wa~~~f~~~is~stis~ilk~ 59 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQ-NRSGQQ---DLIEWFREKFGKDISQPSVSQILSS 59 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSS-SCCCHH---HHHHHHHHHHSSCCSSSSTTHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhC-CCCCHH---HHHHHHHHHHCCCCcHHHHHHHHhh
Confidence 3568999999999999998 556 555443 4566 77 7777888877755
No 133
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=34.14 E-value=32 Score=25.51 Aligned_cols=41 Identities=7% Similarity=0.118 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccc
Q 029280 27 RRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQN 73 (196)
Q Consensus 27 tr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQN 73 (196)
..++.++...+...+... . ...++|+.+|++...|..|+..
T Consensus 24 ~~~s~e~r~~ii~l~~~G-~-----s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG-V-----RPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT-C-----CHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHcC-C-----CHHHHHHHHCcCHHHHHHHHHH
Confidence 468888777666666544 1 3457899999999999999864
No 134
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=33.04 E-value=78 Score=22.95 Aligned_cols=32 Identities=31% Similarity=0.343 Sum_probs=18.0
Q ss_pred hhHHhhhhhHhHHHHHHHHhHHHHHHHHHHhcc
Q 029280 93 NYDSLASGFESLIKEKESLLLEQLQMLNEQLGK 125 (196)
Q Consensus 93 ~~~~L~~~~~sl~~e~~~L~~~e~~~L~~~~~~ 125 (196)
.|..|....++|..|+..|.. ++..|...|..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~-~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEE-EKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 445555555555555555555 55555555554
No 135
>1no4_A Late, head morphogenesis protein; coiled-coil, viral protein; 2.20A {Bacillus phage PHI29} SCOP: h.1.24.1 PDB: 1noh_A
Probab=32.47 E-value=1.3e+02 Score=21.12 Aligned_cols=44 Identities=27% Similarity=0.501 Sum_probs=37.1
Q ss_pred HhhHHHHHHHHHhhHHhhhhhHhHHHHHHHHhHHHHHHHHHHhcc
Q 029280 81 KQIEHDYAQLRANYDSLASGFESLIKEKESLLLEQLQMLNEQLGK 125 (196)
Q Consensus 81 kq~~~e~~~lk~~~~~L~~~~~sl~~e~~~L~~~e~~~L~~~~~~ 125 (196)
.|.+.++...-.+|..|....+.|..|+.-|.. -+.+|=.++.-
T Consensus 29 qqlr~~y~s~~se~~dlt~s~ekl~ae~~dliv-snsklfrqig~ 72 (97)
T 1no4_A 29 QQLRVNYGSFVSEYNDLTKSHEKLAAEKDDLIV-SNSKLFRQIGL 72 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhccCCeee-ecHHHHHHhcc
Confidence 466788889999999999999999999999988 88888766544
No 136
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=31.74 E-value=99 Score=19.54 Aligned_cols=40 Identities=18% Similarity=0.125 Sum_probs=30.2
Q ss_pred HHHHHHHHhhHHhhhhhHhHHHHHHHHhHHHHHHHHHHhcc
Q 029280 85 HDYAQLRANYDSLASGFESLIKEKESLLLEQLQMLNEQLGK 125 (196)
Q Consensus 85 ~e~~~lk~~~~~L~~~~~sl~~e~~~L~~~e~~~L~~~~~~ 125 (196)
+....++..|+.|......|......+.. |+.+|+.+|..
T Consensus 4 q~l~kLKe~n~~L~~kv~~Le~~c~~~eQ-EieRL~~LLkq 43 (48)
T 3vmx_A 4 RQILRLKQINIQLATKIQHLEFSCSEKEQ-EIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHH-HHHHHHHHHHH
Confidence 34567788888888888888777777777 88888887653
No 137
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=31.42 E-value=27 Score=24.81 Aligned_cols=42 Identities=7% Similarity=0.172 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccch
Q 029280 27 RRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNK 74 (196)
Q Consensus 27 tr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNR 74 (196)
..++.++...+...+... . ...++|..+|++...|..|+..-
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~-----s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V-----SLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C-----CHHHHHHHHTCCHHHHHHHHHSG
T ss_pred ccCCHHHHHHHHHHHHcC-C-----CHHHHHHHHCcCHHHHHHHHHcc
Confidence 567888877777777544 2 35678999999999999998653
No 138
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=30.93 E-value=22 Score=26.63 Aligned_cols=43 Identities=7% Similarity=-0.065 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhH
Q 029280 29 FSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRAR 77 (196)
Q Consensus 29 ~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak 77 (196)
+++.+..+|...|-.. ..-.++|..+|+++..|+.+...-|.+
T Consensus 141 L~~~~r~vl~l~~~~g------~s~~EIA~~lgis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 141 LPEDLRMAITLRELDG------LSYEEIAAIMDCPVGTVRSRIFRAREA 183 (194)
T ss_dssp SCHHHHHHHHHHHTTC------CCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC------CCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4555555555544333 234689999999999988766543333
No 139
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=30.91 E-value=12 Score=24.30 Aligned_cols=45 Identities=22% Similarity=0.375 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHH
Q 029280 28 RFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWK 79 (196)
Q Consensus 28 r~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~K 79 (196)
.+++.+..+|..+|.-. .-.++|..+|+++..|+....+=+.+.+
T Consensus 16 ~L~~~e~~vl~l~~~g~-------s~~eIA~~l~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 16 TLSERERQVLSAVVAGL-------PNKSIAYDLDISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HHCHHHHHHHHHHTTTC-------CHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHcCC-------CHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 36777888887743222 3458999999999998876654444433
No 140
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=30.84 E-value=22 Score=27.43 Aligned_cols=44 Identities=18% Similarity=0.192 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhH
Q 029280 28 RFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRAR 77 (196)
Q Consensus 28 r~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak 77 (196)
.+++.+..+|...|-.. ..-.++|..+|+++..|+.....-|.+
T Consensus 187 ~L~~~~r~vl~l~~~~g------~s~~EIA~~lgis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEE------LPAKEVAKILETSVSRVSQLKAKALER 230 (239)
T ss_dssp TSCHHHHHHHHHHHTSC------CCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcC------CCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 45666666776665444 235689999999999887766543333
No 141
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=30.66 E-value=31 Score=25.87 Aligned_cols=25 Identities=16% Similarity=0.408 Sum_probs=20.3
Q ss_pred HHHHHHHHHhCCCCcceeeeccchh
Q 029280 51 RKKMQVATELGLQPRQVAIWFQNKR 75 (196)
Q Consensus 51 ~~r~eLA~~LgL~~rQVkvWFQNRR 75 (196)
.-...+|..+|+++.+++.|+-..|
T Consensus 70 ~~~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 70 EFVQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHHHhCCCcccEEEEEeecC
Confidence 3467789999999999999985443
No 142
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=29.74 E-value=27 Score=25.18 Aligned_cols=41 Identities=7% Similarity=0.035 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhh
Q 029280 28 RFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRA 76 (196)
Q Consensus 28 r~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRa 76 (196)
.++++++..|....... ..+||..+|++...|..|-.+++.
T Consensus 70 ~~~~~~l~~~R~~~gls--------q~~la~~~g~s~~~i~~~E~g~~~ 110 (133)
T 3o9x_A 70 TVAPEFIVKVRKKLSLT--------QKEASEIFGGGVNAFSRYEKGNAQ 110 (133)
T ss_dssp TCCHHHHHHHHHHTTCC--------HHHHHHHHCSCTTHHHHHHHTSSC
T ss_pred CCCHHHHHHHHHHcCCC--------HHHHHHHHCCCHHHHHHHHCCCCC
Confidence 45666666665544433 458999999999999999877653
No 143
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=29.35 E-value=20 Score=28.63 Aligned_cols=54 Identities=24% Similarity=0.314 Sum_probs=34.7
Q ss_pred CCCCCCCHHHHH-HHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHH
Q 029280 24 KNKRRFSDEQIR-LLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWK 79 (196)
Q Consensus 24 r~Rtr~t~eQl~-~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~K 79 (196)
..+...+.++|. .-...|... - +.......||+.+|++..-|-..|.||-.-..
T Consensus 24 ~~~~~~tr~~Il~aA~~l~~~~-G-~~~~s~~~IA~~aGvs~~tlY~hF~~K~~Ll~ 78 (241)
T 2hxi_A 24 AGRRRWSTEQILDAAAELLLAG-D-AETFSVRKLAASLGTDSSSLYRHFRNKTELLR 78 (241)
T ss_dssp ----CCCHHHHHHHHHHHHSSS-S-CCCCCHHHHHHHTTSCHHHHHHHTSSHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHhc-C-cccCCHHHHHHHhCcCHHHHHHHcCCHHHHHH
Confidence 344556666543 334445544 3 44455778999999999999999999766543
No 144
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=29.31 E-value=1.2e+02 Score=19.70 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=12.5
Q ss_pred HHHHHHHhhHHhhhhhHhHHHHHHHHh
Q 029280 86 DYAQLRANYDSLASGFESLIKEKESLL 112 (196)
Q Consensus 86 e~~~lk~~~~~L~~~~~sl~~e~~~L~ 112 (196)
....|...+..|......|..|+..|.
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 145
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=29.22 E-value=28 Score=23.99 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=30.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeecc
Q 029280 24 KNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQ 72 (196)
Q Consensus 24 r~Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQ 72 (196)
.....+|+.+..+|...+.-. ...++|..||++++.|+....
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~~G~-------s~~eIA~~L~iS~~TV~~~~~ 66 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVEKGF-------TNQEIADALHLSKRSIEYSLT 66 (90)
T ss_dssp ----CCCHHHHHHHHHHHTTC-------CHHHHHHHHTCCHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHcCC-------CHHHHHHHHCcCHHHHHHHHH
Confidence 345689999999998877332 467899999999998876443
No 146
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=29.18 E-value=1.1e+02 Score=22.06 Aligned_cols=35 Identities=26% Similarity=0.233 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhHHhhhhhHhHHHHHHHHhHHHHHHH
Q 029280 84 EHDYAQLRANYDSLASGFESLIKEKESLLLEQLQML 119 (196)
Q Consensus 84 ~~e~~~lk~~~~~L~~~~~sl~~e~~~L~~~e~~~L 119 (196)
..++..++..++.|..++..|..++..|.. ++.+.
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~-~Le~~ 45 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEA-QLERR 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 347788899999999999999999999998 77664
No 147
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=29.12 E-value=19 Score=27.98 Aligned_cols=55 Identities=15% Similarity=0.282 Sum_probs=34.5
Q ss_pred CCCCCCCCHHHHH-HHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHH
Q 029280 23 MKNKRRFSDEQIR-LLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWK 79 (196)
Q Consensus 23 rr~Rtr~t~eQl~-~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~K 79 (196)
++.|...+.+++. .....|... . +.......||..+|++..-|-..|.||-.-..
T Consensus 19 ~~~r~~~tr~~Il~aA~~l~~~~-G-~~~~s~~~IA~~aGvs~~tlY~~F~~K~~L~~ 74 (211)
T 3fiw_A 19 FQGMTKMNRETVITEALDLLDEV-G-LDGVSTRRLAKRLGVEQPSLYWYFRTKRDLLT 74 (211)
T ss_dssp -----CCCHHHHHHHHHHHHHHH-C-GGGCCHHHHHHHHTSCTHHHHTTCSSHHHHHH
T ss_pred cccccccCHHHHHHHHHHHHHhc-C-cccCCHHHHHHHhCCChhHHHHHcCCHHHHHH
Confidence 4445566665543 344446655 3 33345778999999999999999998765543
No 148
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=28.01 E-value=1.2e+02 Score=19.49 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=20.9
Q ss_pred HHhhHHhhhhhHhHHHHHHHHhHHHHHHHHHHhc
Q 029280 91 RANYDSLASGFESLIKEKESLLLEQLQMLNEQLG 124 (196)
Q Consensus 91 k~~~~~L~~~~~sl~~e~~~L~~~e~~~L~~~~~ 124 (196)
+.....|......|..++..|.. ++..|+..+.
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~-ei~~L~~e~~ 54 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQT-EIANLLKEKE 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 44456666666666667766666 6666666543
No 149
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=27.83 E-value=76 Score=25.42 Aligned_cols=32 Identities=22% Similarity=0.172 Sum_probs=16.2
Q ss_pred HHhhHHhhhhhHhHHHHHHHHhHHHHHHHHHHh
Q 029280 91 RANYDSLASGFESLIKEKESLLLEQLQMLNEQL 123 (196)
Q Consensus 91 k~~~~~L~~~~~sl~~e~~~L~~~e~~~L~~~~ 123 (196)
-..+..|.+.+..|.+++++|.. |..+..+.+
T Consensus 151 ld~~~~L~~~n~~LqkeNeRL~~-E~n~~l~ql 182 (184)
T 3w03_C 151 LDTIAENQAKNEHLQKENERLLR-DWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 33445555555555555555555 444444433
No 150
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=27.74 E-value=1e+02 Score=20.79 Aligned_cols=33 Identities=12% Similarity=0.080 Sum_probs=23.2
Q ss_pred hhHHhhhhhHhHHHHHHHHhHHHHHHHHHHhccc
Q 029280 93 NYDSLASGFESLIKEKESLLLEQLQMLNEQLGKS 126 (196)
Q Consensus 93 ~~~~L~~~~~sl~~e~~~L~~~e~~~L~~~~~~~ 126 (196)
.+..|......+..+...|.. ++..|+..+..-
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~-~~~~L~~~l~~L 80 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKR-QNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 345566667777777788877 788887777543
No 151
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=27.09 E-value=20 Score=26.95 Aligned_cols=42 Identities=10% Similarity=0.109 Sum_probs=30.9
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHH
Q 029280 35 RLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARW 78 (196)
Q Consensus 35 ~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~ 78 (196)
......|... .| .......||+..|++..-|-..|.|+-.-.
T Consensus 35 ~aa~~lf~~~-G~-~~~tv~~IA~~agvs~~t~Y~~F~sK~~Ll 76 (215)
T 2qko_A 35 NAAIEVLARE-GA-RGLTFRAVDVEANVPKGTASNYFPSRDDLF 76 (215)
T ss_dssp HHHHHHHHHT-CT-TTCCHHHHHHHSSSTTTCHHHHCSCHHHHH
T ss_pred HHHHHHHHHh-Ch-hhccHHHHHHHcCCCcchHHHhCCCHHHHH
Confidence 3444457665 43 445577899999999999999999976543
No 152
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=26.99 E-value=15 Score=24.99 Aligned_cols=47 Identities=11% Similarity=0.172 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhHHH
Q 029280 26 KRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWK 79 (196)
Q Consensus 26 Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak~K 79 (196)
-..+++.+..+|..++.-. .-.++|..+|+++..|+....+-+.+.+
T Consensus 27 l~~Lt~~e~~vl~l~~~g~-------s~~eIA~~l~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 27 YEMLTEREMEILLLIAKGY-------SNQEIASASHITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GGGCCSHHHHHHHHHHTTC-------CTTHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHHcCC-------CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 3468899999998854332 2347899999999999877654444443
No 153
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=26.68 E-value=63 Score=17.63 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=12.2
Q ss_pred hhhhhHhHHHHHHHHhHHHHHHH
Q 029280 97 LASGFESLIKEKESLLLEQLQML 119 (196)
Q Consensus 97 L~~~~~sl~~e~~~L~~~e~~~L 119 (196)
|+.+...|+-|...|+. ++..|
T Consensus 5 lkdevgelkgevralkd-evkdl 26 (27)
T 3v86_A 5 LKDEVGELKGEVRALKD-EVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHH
T ss_pred hhHHHHHHHhHHHHHHH-HHhcc
Confidence 44455556666666665 55443
No 154
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=26.55 E-value=87 Score=20.09 Aligned_cols=20 Identities=35% Similarity=0.428 Sum_probs=11.2
Q ss_pred hHHhhhhhHhHHHHHHHHhH
Q 029280 94 YDSLASGFESLIKEKESLLL 113 (196)
Q Consensus 94 ~~~L~~~~~sl~~e~~~L~~ 113 (196)
|+.|....+.|+.|+-.|..
T Consensus 5 YdQL~~QVe~Lk~ENshLrr 24 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQ 24 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHH
Confidence 55555555555555555555
No 155
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=26.50 E-value=1.3e+02 Score=21.83 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=32.7
Q ss_pred CCCCCHHHHHHHHHHHhhc----CCCCCHHHHHHHHHHhCCCCc
Q 029280 26 KRRFSDEQIRLLESIFESE----STKLEPRKKMQVATELGLQPR 65 (196)
Q Consensus 26 Rtr~t~eQl~~LE~~F~~~----~~~p~~~~r~eLA~~LgL~~r 65 (196)
+..+|.+|+..|...|..- .-+++..+...+.+.+|..+.
T Consensus 7 ~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 7 RVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred ccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 5679999999999999752 367888888888888887664
No 156
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=26.27 E-value=22 Score=21.51 Aligned_cols=36 Identities=19% Similarity=0.373 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeecc
Q 029280 31 DEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQ 72 (196)
Q Consensus 31 ~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQ 72 (196)
+++...+...|... . ...++|..+|+++..|..|+.
T Consensus 18 ~~~~~~i~~l~~~g-~-----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKMG-Y-----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHTT-C-----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC-C-----CHHHHHHHHCcCHHHHHHHHH
Confidence 56666555555444 1 356899999999998887763
No 157
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=25.88 E-value=1.1e+02 Score=25.73 Aligned_cols=37 Identities=16% Similarity=0.160 Sum_probs=19.2
Q ss_pred hHHHHHHHHHhhHHhhhhhHhHHHHHHHHhHHHHHHHH
Q 029280 83 IEHDYAQLRANYDSLASGFESLIKEKESLLLEQLQMLN 120 (196)
Q Consensus 83 ~~~e~~~lk~~~~~L~~~~~sl~~e~~~L~~~e~~~L~ 120 (196)
...+...+...+..|......++.|...|+. |+.+|+
T Consensus 59 L~~ql~~L~arNe~L~~~Lk~ar~El~~Lke-ElerL~ 95 (251)
T 3m9b_A 59 LEARIDSLAARNSKLMETLKEARQQLLALRE-EVDRLG 95 (251)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhc
Confidence 3444445555555555555555555555555 554444
No 158
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=25.71 E-value=49 Score=27.36 Aligned_cols=37 Identities=24% Similarity=0.247 Sum_probs=21.0
Q ss_pred HHHhhHHhhhhhHhHHH---HHHHHhHHHHHHHHHHhcccC
Q 029280 90 LRANYDSLASGFESLIK---EKESLLLEQLQMLNEQLGKSD 127 (196)
Q Consensus 90 lk~~~~~L~~~~~sl~~---e~~~L~~~e~~~L~~~~~~~~ 127 (196)
+..+++.|+.++..|+. +...|.. |+.+|+.+|.-..
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~~~~~l~~-En~rLr~lL~~~~ 63 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLESEVADLKK-ENKDLKESLDITD 63 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCcc
Confidence 34444455555444443 3445666 8888999877654
No 159
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=23.11 E-value=1.5e+02 Score=18.76 Aligned_cols=35 Identities=34% Similarity=0.359 Sum_probs=18.8
Q ss_pred HHHHhhHHhhhhhHhHHHHHHHHhHHHHHHHHHHhc
Q 029280 89 QLRANYDSLASGFESLIKEKESLLLEQLQMLNEQLG 124 (196)
Q Consensus 89 ~lk~~~~~L~~~~~sl~~e~~~L~~~e~~~L~~~~~ 124 (196)
.++.....|...|..|..-...... ++..|++.|.
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~-el~~Lkeele 47 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQ-QLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3445555555555555555555555 5555555543
No 160
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=22.97 E-value=1.9e+02 Score=20.27 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=19.5
Q ss_pred HHHHHHHHhhHHhhhhhHhHHHHHHHHhHHHHHHHHH
Q 029280 85 HDYAQLRANYDSLASGFESLIKEKESLLLEQLQMLNE 121 (196)
Q Consensus 85 ~e~~~lk~~~~~L~~~~~sl~~e~~~L~~~e~~~L~~ 121 (196)
.....|+...+.+..++..+..|...|.. ++..++.
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~-~~~~~k~ 91 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERDNLAE-DIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 33444555555555555555555555555 5555544
No 161
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=22.77 E-value=41 Score=23.10 Aligned_cols=41 Identities=7% Similarity=0.116 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccc
Q 029280 27 RRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQN 73 (196)
Q Consensus 27 tr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQN 73 (196)
..++.++...+...+... . ...++|..+|++...|..|+..
T Consensus 16 ~~~s~~~r~~i~~~~~~g---~---s~~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMAADG---I---RPCVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp SCCCHHHHHHHHHHHHTT---C---CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHcC---C---CHHHHHHHHCcCHHHHHHHHHH
Confidence 357887776666666533 1 2457899999999999999864
No 162
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=22.68 E-value=1e+02 Score=25.87 Aligned_cols=41 Identities=32% Similarity=0.359 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhHHhhhhhHhHHHHHHHHhHHHHHHHHHHhcc
Q 029280 84 EHDYAQLRANYDSLASGFESLIKEKESLLLEQLQMLNEQLGK 125 (196)
Q Consensus 84 ~~e~~~lk~~~~~L~~~~~sl~~e~~~L~~~e~~~L~~~~~~ 125 (196)
+.....+..++..|...+..|..+...+.. |+.+|++.+.+
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~-El~~LkeEler 93 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQ-QLLALREEVDR 93 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 445677899999999999999999999999 99999998754
No 163
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=22.55 E-value=1.7e+02 Score=19.08 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=28.4
Q ss_pred HHHHHHHHhhHHhhhhhHhHHHHHHHHhHHHHHHHHHHhccc
Q 029280 85 HDYAQLRANYDSLASGFESLIKEKESLLLEQLQMLNEQLGKS 126 (196)
Q Consensus 85 ~e~~~lk~~~~~L~~~~~sl~~e~~~L~~~e~~~L~~~~~~~ 126 (196)
.....|++.+..|......|+...-.-.. |+.+|+.+|...
T Consensus 11 ~q~~kLKq~n~~L~~kv~~Le~~c~e~eQ-EieRL~~LLkqH 51 (58)
T 3a2a_A 11 RQLLRLKQMNVQLAAKIQHLEFSCSEKEQ-EIERLNKLLRQH 51 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHc
Confidence 34566777777777777777766666666 777888777543
No 164
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=21.37 E-value=1.7e+02 Score=18.69 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=26.2
Q ss_pred HHhhHHhhhhhHhHHHHHHHHhHHHHHHHHHHhccc
Q 029280 91 RANYDSLASGFESLIKEKESLLLEQLQMLNEQLGKS 126 (196)
Q Consensus 91 k~~~~~L~~~~~sl~~e~~~L~~~e~~~L~~~~~~~ 126 (196)
+.....|......|..++..|.. ++..|+..+..-
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~-~v~~L~~e~~~L 55 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELAS-TANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 45667777778888888888888 888888776543
No 165
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=21.14 E-value=20 Score=27.55 Aligned_cols=40 Identities=13% Similarity=0.243 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccc
Q 029280 28 RFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQN 73 (196)
Q Consensus 28 r~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQN 73 (196)
.+++.+..+|...|-.. ..-.++|..+|+++..|+.+...
T Consensus 198 ~L~~~~r~vl~l~~~~g------~s~~EIA~~lgis~~tV~~~~~r 237 (243)
T 1l0o_C 198 ELDERERLIVYLRYYKD------QTQSEVASRLGISQVQMSRLEKK 237 (243)
T ss_dssp ----------------------------------------------
T ss_pred hCCHHHHHHHHHHHhcC------CCHHHHHHHHCcCHHHHHHHHHH
Confidence 35566666665544333 35568999999999999887754
No 166
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=20.85 E-value=46 Score=26.34 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCcceeeeccchhhH
Q 029280 26 KRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIWFQNKRAR 77 (196)
Q Consensus 26 Rtr~t~eQl~~LE~~F~~~~~~p~~~~r~eLA~~LgL~~rQVkvWFQNRRak 77 (196)
...+|+.+..+|.-.+.-. .-.++|..||++++.|+....|=+.|
T Consensus 173 ~~~Lt~~e~~vl~~~~~g~-------s~~eIa~~l~is~~tV~~~~~~~~~k 217 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASKGK-------TASVTANLTGINARTVQHYLDKARAK 217 (236)
T ss_dssp GGSCCHHHHHHHHHHHTTC-------CHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC-------CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4569999999997754332 35689999999999998766554443
No 167
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=20.35 E-value=18 Score=22.03 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCCcceeeeccchh
Q 029280 53 KMQVATELGLQPRQVAIWFQNKR 75 (196)
Q Consensus 53 r~eLA~~LgL~~rQVkvWFQNRR 75 (196)
..+||..+|+++..|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999987654
Done!