Query 029281
Match_columns 196
No_of_seqs 131 out of 872
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 16:56:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029281.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029281hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 1.2E-55 4.1E-60 355.1 12.6 158 10-173 10-169 (174)
2 1ut7_A No apical meristem prot 100.0 1.6E-55 5.5E-60 353.8 12.8 164 1-176 4-169 (171)
3 1cmb_A Met APO-repressor; DNA- 59.4 12 0.00041 26.2 4.1 38 22-63 50-87 (104)
4 1ldd_A APC2WHB, anaphase promo 33.2 20 0.00069 24.0 1.8 27 15-42 36-63 (74)
5 2c4b_A Barnase mcoeeti fusion; 26.1 70 0.0024 24.1 3.9 37 24-63 4-48 (143)
6 2xr4_A Lectin; sugar binding p 24.7 27 0.00092 25.4 1.3 14 11-24 5-18 (116)
7 4dox_A Coat protein; all helix 22.0 41 0.0014 27.3 2.0 29 8-36 147-176 (226)
8 3nr5_A MAF1, repressor of RNA 21.7 32 0.0011 26.6 1.2 12 47-58 119-130 (164)
9 3g2b_A Coenzyme PQQ synthesis 17.8 45 0.0015 23.0 1.2 13 10-22 10-22 (95)
10 1ym0_B Fibrinotic enzyme compo 15.4 75 0.0026 16.6 1.4 11 8-18 17-27 (27)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1.2e-55 Score=355.11 Aligned_cols=158 Identities=37% Similarity=0.699 Sum_probs=129.7
Q ss_pred cCccCCCCCeeeCCChHHHHHHHHHHhhcCCCCCCCcccccCCCCCCCCCCCCc--CCCCeEEEEeccccccccCCCCcc
Q 029281 10 NGGLKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGD--MKEKKRYFFSNIRNESAIDNDGKC 87 (196)
Q Consensus 10 ~~~~~LppG~rF~PTDeELv~~YL~~k~~g~~l~~~~I~~~Dvy~~~Pw~Lp~~--~~~~~~yFFs~~~~~~~~~~g~R~ 87 (196)
..++.|||||||+|||||||.|||++|+.|.++|.++|+++|||.+|||+||+. .++.+|||||+ +.+++++|.|.
T Consensus 10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~--r~~ky~~g~R~ 87 (174)
T 3ulx_A 10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTP--RDRKYPNGSRP 87 (174)
T ss_dssp CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEE--CCC-----CCS
T ss_pred ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEec--cccccCCCCCc
Confidence 456899999999999999999999999999999999999999999999999987 45689999999 77889999999
Q ss_pred ccccCCceeeecCCceeeEecCCCeEEEEEEEeeeecccCCCCCccCeEEEEEEeCCCCCCCCCCCCCCcccccccceec
Q 029281 88 KIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHETKTQWVMHQYHLVAIATNTNLTQPVSPFFFFWENLCD 167 (196)
Q Consensus 88 ~R~~g~G~Wk~~g~~~~I~~~~~g~~vG~kk~l~F~~g~~~~~~kT~W~M~EY~l~~~~~~~~~~~~~~~~~~~w~vlC~ 167 (196)
+|+|++|+||++|++++|.. +|.+||+||+|+||.++++++.+|+|+||||+|.+..........-+.....| |||
T Consensus 88 nR~t~~G~WkatG~dk~I~~--~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~w-VlC- 163 (174)
T 3ulx_A 88 NRAAGNGYWKATGADKPVAP--RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDW-VLC- 163 (174)
T ss_dssp CEEETTEEEEECSCCEEECC--SSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSE-EEE-
T ss_pred eeecCCceEccCCCCcEEee--CCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCE-EEE-
Confidence 99999999999999999985 58999999999999999999999999999999998765421111111223478 899
Q ss_pred EEEEec
Q 029281 168 HIVIKS 173 (196)
Q Consensus 168 ~v~~k~ 173 (196)
+||+|+
T Consensus 164 rvf~K~ 169 (174)
T 3ulx_A 164 RLYNKK 169 (174)
T ss_dssp EEEESC
T ss_pred EEEEcC
Confidence 777654
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=1.6e-55 Score=353.80 Aligned_cols=164 Identities=39% Similarity=0.653 Sum_probs=130.4
Q ss_pred CCccccccccCccCCCCCeeeCCChHHHHHHHHHHhhcCCCCCCCcccccCCCCCCCCCCCCc--CCCCeEEEEeccccc
Q 029281 1 MEKQNNYVVNGGLKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGD--MKEKKRYFFSNIRNE 78 (196)
Q Consensus 1 ~~~~~~~~~~~~~~LppG~rF~PTDeELv~~YL~~k~~g~~l~~~~I~~~Dvy~~~Pw~Lp~~--~~~~~~yFFs~~~~~ 78 (196)
|+.+++- ...++.|||||||+|||||||.|||++|+.|.+++.++|+++|||.+|||+||+. .++.+|||||+ +.
T Consensus 4 m~~~~~~-~~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~--r~ 80 (171)
T 1ut7_A 4 MGIQETD-PLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSP--RD 80 (171)
T ss_dssp CCCC-----CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEE--CC
T ss_pred cccccCC-cccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEec--cc
Confidence 5555443 2557899999999999999999999999999999999999999999999999987 46789999999 77
Q ss_pred cccCCCCccccccCCceeeecCCceeeEecCCCeEEEEEEEeeeecccCCCCCccCeEEEEEEeCCCCCCCCCCCCCCcc
Q 029281 79 SAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHETKTQWVMHQYHLVAIATNTNLTQPVSPF 158 (196)
Q Consensus 79 ~~~~~g~R~~R~~g~G~Wk~~g~~~~I~~~~~g~~vG~kk~l~F~~g~~~~~~kT~W~M~EY~l~~~~~~~~~~~~~~~~ 158 (196)
+++++|.|.+|+|++|+||++|++++|.. ++.+||+|++|+||.++++++.+|+|+||||+|.+....... ..
T Consensus 81 ~k~~~g~R~~R~t~~G~Wk~tG~~k~I~~--~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~-----~~ 153 (171)
T 1ut7_A 81 RKYPNGSRPNRVAGSGYWKATGTDKIIST--EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGS-----TK 153 (171)
T ss_dssp C-------CCEEETTEEEEEEEEEEEEEE--TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC------------
T ss_pred cccCCCCcccccCCCCEEeccCCCceEEe--cCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCc-----cc
Confidence 88999999999999999999999999986 569999999999999999999999999999999987632111 11
Q ss_pred cccccceecEEEEeceee
Q 029281 159 FFFWENLCDHIVIKSRLY 176 (196)
Q Consensus 159 ~~~w~vlC~~v~~k~r~~ 176 (196)
...| ||| +||+|++..
T Consensus 154 ~~~~-VlC-rv~~k~~~~ 169 (171)
T 1ut7_A 154 LDDW-VLC-RIYKKQSSA 169 (171)
T ss_dssp -CCE-EEE-EEEECC---
T ss_pred CCCE-EEE-EEEEcCCCC
Confidence 2357 899 888877654
No 3
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=59.42 E-value=12 Score=26.19 Aligned_cols=38 Identities=24% Similarity=0.397 Sum_probs=32.0
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCCcccccCCCCCCCCCCCCc
Q 029281 22 RPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGD 63 (196)
Q Consensus 22 ~PTDeELv~~YL~~k~~g~~l~~~~I~~~Dvy~~~Pw~Lp~~ 63 (196)
|-|..||++.-..--..|+|||.+ .|+-...|.++|..
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~D----~Dl~Kd~~d~iP~~ 87 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPDD----ADLRKERSDEIPEA 87 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCCG----GGGBTTSCSCSCHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCCc----hhhhhcCCccchHH
Confidence 678899998877788899999985 48888899999865
No 4
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=33.17 E-value=20 Score=24.01 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=22.3
Q ss_pred CCCCeeeCC-ChHHHHHHHHHHhhcCCCC
Q 029281 15 LPIGYRFRP-TDEELVVHYLKRKVFGLPL 42 (196)
Q Consensus 15 LppG~rF~P-TDeELv~~YL~~k~~g~~l 42 (196)
.|.|+.|.. |++||-. ||..++....+
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~kL 63 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEGRL 63 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSE
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCCeE
Confidence 367899998 9999885 99999987764
No 5
>2c4b_A Barnase mcoeeti fusion; squash inhibitor, hybrid microprotein, fusion protein, ribonuclease, endonuclease, hydrolase, nuclease; HET: 2PE MES; 1.3A {Bacillus amyloliquefaciens} SCOP: d.1.1.2 g.3.2.1 PDB: 1b3s_A 2kf3_A 2kf4_A 2kf5_A 2kf6_A 1a2p_A 1b27_A 1b2x_A 1bgs_A 1bni_A 1bnj_A 1bnr_A 1brn_L* 1brs_A 1fw7_A 1x1u_A 1x1w_A 1x1x_A 1yvs_A 3kch_A ...
Probab=26.09 E-value=70 Score=24.13 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=24.8
Q ss_pred ChHHHHHHHHHHhhcCCCCCCCcccc--cCCCCCCCCC------CCCc
Q 029281 24 TDEELVVHYLKRKVFGLPLPASIIPE--LDVFQSHPLG------LPGD 63 (196)
Q Consensus 24 TDeELv~~YL~~k~~g~~l~~~~I~~--~Dvy~~~Pw~------Lp~~ 63 (196)
|+.+-|..||.. -..||..+|.. ++--+.+|.+ +|+.
T Consensus 4 t~~~~V~~yl~~---~~~LP~~yiTK~eA~~~GW~p~kgnL~~v~pgk 48 (143)
T 2c4b_A 4 NTFDGVADYLQT---YHKLPDNYITKSEAQALGWVASKGNLADVAPGK 48 (143)
T ss_dssp CSHHHHHHHHHH---HSSCCTTEECHHHHHHTTCCGGGTCHHHHSTTC
T ss_pred cchhHHHHHHHH---hCcCCcccccHHHHHHcCCCCCcCcHhhcCCCc
Confidence 455556678877 36788887766 4556778865 5666
No 6
>2xr4_A Lectin; sugar binding protein, LUNG, pathogen; 1.90A {Burkholderia cenocepacia}
Probab=24.74 E-value=27 Score=25.42 Aligned_cols=14 Identities=36% Similarity=0.586 Sum_probs=10.9
Q ss_pred CccCCCCCeeeCCC
Q 029281 11 GGLKLPIGYRFRPT 24 (196)
Q Consensus 11 ~~~~LppG~rF~PT 24 (196)
+.+.||+..||--|
T Consensus 5 g~F~LP~ni~Fg~t 18 (116)
T 2xr4_A 5 GTFNLPPHIKFGVT 18 (116)
T ss_dssp SEEECCTTCEEEEE
T ss_pred ceeeCCCCcEEeEE
Confidence 44899999999643
No 7
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=22.04 E-value=41 Score=27.29 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=19.5
Q ss_pred cccCc-cCCCCCeeeCCChHHHHHHHHHHh
Q 029281 8 VVNGG-LKLPIGYRFRPTDEELVVHYLKRK 36 (196)
Q Consensus 8 ~~~~~-~~LppG~rF~PTDeELv~~YL~~k 36 (196)
|.++. ++-+-|..+.||++|++.|=..++
T Consensus 147 V~n~AAl~P~~GLiR~PT~~E~iA~~t~K~ 176 (226)
T 4dox_A 147 VENPAAMQPPSGLTRSPTQEERIANATNKQ 176 (226)
T ss_dssp TTCTTSCCCTTCCSSCCCHHHHHHHHTC--
T ss_pred cCCccccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 44444 444448999999999998755443
No 8
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=21.70 E-value=32 Score=26.60 Aligned_cols=12 Identities=25% Similarity=0.589 Sum_probs=10.5
Q ss_pred ccccCCCCCCCC
Q 029281 47 IPELDVFQSHPL 58 (196)
Q Consensus 47 I~~~Dvy~~~Pw 58 (196)
+.++|||.+.|.
T Consensus 119 l~dC~IYsY~Pd 130 (164)
T 3nr5_A 119 LAECDIYSYNPD 130 (164)
T ss_dssp GGGCEEEEECCC
T ss_pred ccCCeEEEEcCC
Confidence 677899999998
No 9
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=17.77 E-value=45 Score=23.03 Aligned_cols=13 Identities=23% Similarity=0.358 Sum_probs=10.9
Q ss_pred cCccCCCCCeeeC
Q 029281 10 NGGLKLPIGYRFR 22 (196)
Q Consensus 10 ~~~~~LppG~rF~ 22 (196)
+..+.|++||||+
T Consensus 10 ~~~p~l~~~~rl~ 22 (95)
T 3g2b_A 10 DSCPALRAGVRLQ 22 (95)
T ss_dssp TCCCCCCTTCEEE
T ss_pred cCCceeCCCeEEE
Confidence 5668899999996
No 10
>1ym0_B Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Probab=15.41 E-value=75 Score=16.63 Aligned_cols=11 Identities=36% Similarity=0.670 Sum_probs=7.9
Q ss_pred cccCccCCCCC
Q 029281 8 VVNGGLKLPIG 18 (196)
Q Consensus 8 ~~~~~~~LppG 18 (196)
-..+.++||||
T Consensus 17 sdagdmelppg 27 (27)
T 1ym0_B 17 SDAGDMELPPG 27 (27)
T ss_dssp TTTTCCCCCCC
T ss_pred ccccccccCCC
Confidence 34566899987
Done!