Query 029281
Match_columns 196
No_of_seqs 131 out of 872
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 16:56:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029281.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029281hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ut7a_ b.143.1.1 (A:) No apic 100.0 4.9E-53 3.6E-57 336.2 12.8 160 1-172 4-165 (166)
2 d1cmca_ a.43.1.5 (A:) Met repr 64.8 4 0.00029 26.9 4.1 38 22-63 50-87 (104)
3 d1ldda_ a.4.5.34 (A:) Anaphase 21.6 21 0.0015 22.4 1.8 27 15-42 36-63 (74)
4 d1o5ka_ c.1.10.1 (A:) Dihydrod 19.6 18 0.0013 27.4 1.4 29 13-43 101-129 (295)
5 d1f74a_ c.1.10.1 (A:) N-acetyl 16.4 35 0.0026 25.7 2.5 21 13-34 104-124 (293)
6 d1q1va_ a.159.4.1 (A:) DEK C-t 16.2 44 0.0032 20.3 2.4 21 22-43 11-31 (70)
7 d2co8a1 g.39.1.3 (A:44-76) Ned 15.5 26 0.0019 18.3 1.0 11 15-25 10-20 (33)
8 d2a6na1 c.1.10.1 (A:1-292) Dih 13.1 35 0.0026 25.7 1.6 29 13-43 101-129 (292)
9 d1xkya1 c.1.10.1 (A:1-292) Dih 12.8 34 0.0025 25.7 1.4 20 13-33 103-122 (292)
10 d2ho2a1 b.72.1.1 (A:253-285) A 12.3 36 0.0026 17.8 0.9 7 14-20 2-8 (33)
No 1
>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=100.00 E-value=4.9e-53 Score=336.16 Aligned_cols=160 Identities=41% Similarity=0.687 Sum_probs=127.6
Q ss_pred CCccccccccCccCCCCCeeeCCChHHHHHHHHHHhhcCCCCCCCcccccCCCCCCCCCCCCc--CCCCeEEEEeccccc
Q 029281 1 MEKQNNYVVNGGLKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGD--MKEKKRYFFSNIRNE 78 (196)
Q Consensus 1 ~~~~~~~~~~~~~~LppG~rF~PTDeELv~~YL~~k~~g~~l~~~~I~~~Dvy~~~Pw~Lp~~--~~~~~~yFFs~~~~~ 78 (196)
|+.+ +--...+++|||||||+|||+|||.|||++|+.|.|++.++|+++|||++|||+||+. .++++||||++ +.
T Consensus 4 ~~~~-~~~~~~~l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~Dvy~~~Pw~Lp~~~~~~~~~wyFft~--~~ 80 (166)
T d1ut7a_ 4 MGIQ-ETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSP--RD 80 (166)
T ss_dssp CCCC-----CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEE--CC
T ss_pred cccc-ccCccccccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceeccCCcCChhhccchhccCcceEEEEee--ec
Confidence 5555 3355667899999999999999999999999999999999999999999999999976 45688999999 66
Q ss_pred cccCCCCccccccCCceeeecCCceeeEecCCCeEEEEEEEeeeecccCCCCCccCeEEEEEEeCCCCCCCCCCCCCCcc
Q 029281 79 SAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHETKTQWVMHQYHLVAIATNTNLTQPVSPF 158 (196)
Q Consensus 79 ~~~~~g~R~~R~~g~G~Wk~~g~~~~I~~~~~g~~vG~kk~l~F~~g~~~~~~kT~W~M~EY~l~~~~~~~~~~~~~~~~ 158 (196)
+++++|.|.+|++++|+||++|+++.|.+ +|.+||+|++|+||+++++++.+|+|+||||+|.+.........
T Consensus 81 ~k~~~g~r~~R~~g~G~Wk~~g~~~~i~~--~g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~~~~~~----- 153 (166)
T d1ut7a_ 81 RKYPNGSRPNRVAGSGYWKATGTDKIIST--EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTK----- 153 (166)
T ss_dssp C-------CCEEETTEEEEEEEEEEEEEE--TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC------------
T ss_pred cccCCCCccccccCCCEecccCCCceEec--CCcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCcccccCccc-----
Confidence 78889999999999999999999988875 78999999999999999999999999999999988765432221
Q ss_pred cccccceecEEEEe
Q 029281 159 FFFWENLCDHIVIK 172 (196)
Q Consensus 159 ~~~w~vlC~~v~~k 172 (196)
...| ||| +|++|
T Consensus 154 ~~~~-VLC-rI~~K 165 (166)
T d1ut7a_ 154 LDDW-VLC-RIYKK 165 (166)
T ss_dssp -CCE-EEE-EEEEC
T ss_pred cCCE-EEE-EEEec
Confidence 1246 899 77764
No 2
>d1cmca_ a.43.1.5 (A:) Met repressor, MetJ (MetR) {Escherichia coli [TaxId: 562]}
Probab=64.76 E-value=4 Score=26.89 Aligned_cols=38 Identities=24% Similarity=0.397 Sum_probs=32.3
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCCcccccCCCCCCCCCCCCc
Q 029281 22 RPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGD 63 (196)
Q Consensus 22 ~PTDeELv~~YL~~k~~g~~l~~~~I~~~Dvy~~~Pw~Lp~~ 63 (196)
|-|..||++.-..--..|+|||.+ .|+-...|.+||..
T Consensus 50 HATNSELLCEAFLHAfTGQPLP~D----~Dl~Kd~~~~iP~~ 87 (104)
T d1cmca_ 50 HATNSELLCEAFLHAFTGQPLPDD----ADLRKERSDEIPEA 87 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCCG----GGGBTTSCSCSCHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCCc----hhhhhcCcccccHH
Confidence 678899998877888899999985 48888999999865
No 3
>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.63 E-value=21 Score=22.37 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=21.6
Q ss_pred CCCCeee-CCChHHHHHHHHHHhhcCCCC
Q 029281 15 LPIGYRF-RPTDEELVVHYLKRKVFGLPL 42 (196)
Q Consensus 15 LppG~rF-~PTDeELv~~YL~~k~~g~~l 42 (196)
.|.|+.| .+|.+||-. ||..++....|
T Consensus 36 v~~~~~~~~~t~~eL~~-FL~~~V~e~kL 63 (74)
T d1ldda_ 36 VPKDWGYNRITLQQLEG-YLNTLADEGRL 63 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSE
T ss_pred cCCCCCCCCcCHHHHHH-HHHHHHhcCce
Confidence 4668888 579999985 99999987764
No 4
>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=19.56 E-value=18 Score=27.39 Aligned_cols=29 Identities=34% Similarity=0.346 Sum_probs=18.3
Q ss_pred cCCCCCeeeCCChHHHHHHHHHHhhcCCCCC
Q 029281 13 LKLPIGYRFRPTDEELVVHYLKRKVFGLPLP 43 (196)
Q Consensus 13 ~~LppG~rF~PTDeELv~~YL~~k~~g~~l~ 43 (196)
+-+|| +.|.||++||+.|| +.-+...++|
T Consensus 101 ~v~pP-~y~~~s~~~i~~~~-~~ia~a~~~p 129 (295)
T d1o5ka_ 101 LVVTP-YYNKPTQEGLYQHY-KYISERTDLG 129 (295)
T ss_dssp EEECC-CSSCCCHHHHHHHH-HHHHTTCSSC
T ss_pred EEeCC-CCCCCCHHHHHHHH-HHHHhccCCC
Confidence 34566 66789999999865 4434333333
No 5
>d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]}
Probab=16.43 E-value=35 Score=25.68 Aligned_cols=21 Identities=14% Similarity=0.070 Sum_probs=15.8
Q ss_pred cCCCCCeeeCCChHHHHHHHHH
Q 029281 13 LKLPIGYRFRPTDEELVVHYLK 34 (196)
Q Consensus 13 ~~LppG~rF~PTDeELv~~YL~ 34 (196)
+-+||-+ |.||++|++.||..
T Consensus 104 ~~~pP~~-~~~s~~~~~~~~~~ 124 (293)
T d1f74a_ 104 SAVTPFY-YKFSFPEIKHYYDT 124 (293)
T ss_dssp ECCCCCS-SCCCHHHHHHHHHH
T ss_pred eccCccc-cccchHHHHHHHhc
Confidence 4456654 89999999988854
No 6
>d1q1va_ a.159.4.1 (A:) DEK C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.16 E-value=44 Score=20.35 Aligned_cols=21 Identities=38% Similarity=0.438 Sum_probs=16.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCC
Q 029281 22 RPTDEELVVHYLKRKVFGLPLP 43 (196)
Q Consensus 22 ~PTDeELv~~YL~~k~~g~~l~ 43 (196)
-|||+||.. .|+.-+.+.+|-
T Consensus 11 ~ptd~ei~~-~i~~IL~~aDL~ 31 (70)
T d1q1va_ 11 PPTDEELKE-TIKKLLASANLE 31 (70)
T ss_dssp CCCHHHHHH-HHHHHHTTSCGG
T ss_pred CCCHHHHHH-HHHHHHHhCCHH
Confidence 589999996 688877777653
No 7
>d2co8a1 g.39.1.3 (A:44-76) Nedd9 interacting protein with calponin homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.53 E-value=26 Score=18.28 Aligned_cols=11 Identities=45% Similarity=0.800 Sum_probs=8.7
Q ss_pred CCCCeeeCCCh
Q 029281 15 LPIGYRFRPTD 25 (196)
Q Consensus 15 LppG~rF~PTD 25 (196)
-|-||+++|-|
T Consensus 10 ~pG~Y~qhp~d 20 (33)
T d2co8a1 10 WPGGYEQHPGD 20 (33)
T ss_dssp CTTSEECCTTT
T ss_pred ccCcccCCCCC
Confidence 46789999876
No 8
>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]}
Probab=13.14 E-value=35 Score=25.68 Aligned_cols=29 Identities=34% Similarity=0.449 Sum_probs=18.1
Q ss_pred cCCCCCeeeCCChHHHHHHHHHHhhcCCCCC
Q 029281 13 LKLPIGYRFRPTDEELVVHYLKRKVFGLPLP 43 (196)
Q Consensus 13 ~~LppG~rF~PTDeELv~~YL~~k~~g~~l~ 43 (196)
+-+||-| |.|||+||+.|| +.-+...++|
T Consensus 101 ~~~pP~~-~~~~~~~i~~~f-~~v~~~~~~p 129 (292)
T d2a6na1 101 LTVTPYY-NRPSQEGLYQHF-KAIAEHTDLP 129 (292)
T ss_dssp EEECCCS-SCCCHHHHHHHH-HHHHHTCSSC
T ss_pred eccCCCC-CCCCHHHHHHHH-HHHhhccCCc
Confidence 4456644 789999999765 4444444433
No 9
>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]}
Probab=12.82 E-value=34 Score=25.69 Aligned_cols=20 Identities=20% Similarity=0.464 Sum_probs=14.9
Q ss_pred cCCCCCeeeCCChHHHHHHHH
Q 029281 13 LKLPIGYRFRPTDEELVVHYL 33 (196)
Q Consensus 13 ~~LppG~rF~PTDeELv~~YL 33 (196)
+-+|| +.|.||+++|+.||-
T Consensus 103 lv~pP-~~~~~s~~~i~~~~~ 122 (292)
T d1xkya1 103 MLVAP-YYNKPSQEGMYQHFK 122 (292)
T ss_dssp EEECC-CSSCCCHHHHHHHHH
T ss_pred EECCC-CCCCCCHHHHHHHHH
Confidence 44556 668899999998664
No 10
>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.31 E-value=36 Score=17.81 Aligned_cols=7 Identities=43% Similarity=0.966 Sum_probs=0.0
Q ss_pred CCCCCee
Q 029281 14 KLPIGYR 20 (196)
Q Consensus 14 ~LppG~r 20 (196)
.||||.+
T Consensus 2 dLPpGW~ 8 (33)
T d2ho2a1 2 DLPAGWM 8 (33)
T ss_dssp CSCTTEE
T ss_pred CCCCcce
Done!