BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029282
(196 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 83/149 (55%), Gaps = 9/149 (6%)
Query: 40 LDLVVVNPMLVIGTLLQPTVNASIIHILKYLTGSVKTYANSVQG-YVDVRDVALAHILVY 98
+D + + P LV+G + ++ S+I L +TG+ Y+ QG +V + D+ AHI ++
Sbjct: 183 IDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIYLF 242
Query: 99 ETPSASGRYICADSDSIIHRGEVVEILAKFFPEYPIPTKCK--DEKSPRAKPYKYSNHKI 156
E P A GRYIC+ D II ++ ++L + +PEY IPT+ K DE K +S+ K+
Sbjct: 243 ENPKAEGRYICSSHDCIIL--DLAKMLREKYPEYNIPTEFKGVDE---NLKSVCFSSKKL 297
Query: 157 KDLGLKFT-PVRQCLYDSVKSLQEKGHLP 184
DLG +F + +V + + KG LP
Sbjct: 298 TDLGFEFKYSLEDMFTGAVDTCRAKGLLP 326
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 80/154 (51%), Gaps = 15/154 (9%)
Query: 40 LDLVVVNPMLVIGTLLQPTVNASIIHILKYLTGSVKTYANSVQGY---------VDVRDV 90
+DL+ V P L+ G+ L V +SI + +TG+ + N ++G V DV
Sbjct: 188 IDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGN-EFLINGMKGMQMLSGSVSIAHVEDV 246
Query: 91 ALAHILVYETPSASGRYICADSDSIIHRGEVVEILAKFFPEYPIPTKCKDEKSPRAKPYK 150
AHI V E SASGRYIC +++ + E+ + L+K +P+Y +PT D P++K
Sbjct: 247 CRAHIFVAEKESASGRYICCAANTSVP--ELAKFLSKRYPQYKVPTDFGD-FPPKSKLII 303
Query: 151 YSNHKIKDLGLKFTPVRQCLYD-SVKSLQEKGHL 183
S +K+ G F + +YD SV+ + KG L
Sbjct: 304 SSEKLVKE-GFSFKYGIEEIYDESVEYFKAKGLL 336
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 4/177 (2%)
Query: 9 NLYKEIAALNW-YCYXXXXXXXXXXXXXXXRGLDLVVVNPMLVIGTLLQPTVNASIIHIL 67
+L + + W Y G+D+V + ++G + P + SI L
Sbjct: 148 DLLRSVKPFGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKAL 207
Query: 68 KYLTGSVKTYANSVQGYVDVRDVALAHILVYETPSASGRYICADSDSIIHRGEVVEILAK 127
+ G + + V V DVA AHI + E GRY C S I+ E+ ++L+
Sbjct: 208 VLVLGKKEQIGVTRFHMVHVDDVARAHIYLLENSVPGGRYNC--SPFIVPIEEMSQLLSA 265
Query: 128 FFPEYPIPTKCKDEKSPRAKPYKYSNHKIKDLGLKFT-PVRQCLYDSVKSLQEKGHL 183
+PEY I T + ++ A+ + K+ D G F + D+++ +EKG+L
Sbjct: 266 KYPEYQILTVDELKEIKGARLPDLNTKKLVDAGFDFKYTIEDMFDDAIQCCKEKGYL 322
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,391,672
Number of Sequences: 62578
Number of extensions: 207304
Number of successful extensions: 509
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 501
Number of HSP's gapped (non-prelim): 7
length of query: 196
length of database: 14,973,337
effective HSP length: 94
effective length of query: 102
effective length of database: 9,091,005
effective search space: 927282510
effective search space used: 927282510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)