BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029283
(196 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AP8|A Chain A, Crystal Structure Of Human Molybdopterin Synthase
Catalytic Subunit (Mocs2b)
pdb|4AP8|B Chain B, Crystal Structure Of Human Molybdopterin Synthase
Catalytic Subunit (Mocs2b)
pdb|4AP8|C Chain C, Crystal Structure Of Human Molybdopterin Synthase
Catalytic Subunit (Mocs2b)
pdb|4AP8|D Chain D, Crystal Structure Of Human Molybdopterin Synthase
Catalytic Subunit (Mocs2b)
Length = 135
Score = 123 bits (308), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 59/108 (54%), Positives = 75/108 (69%)
Query: 27 VSAPQAGAIATFSGTTRDTFDGKIVVELRYESYVSMAIRCIKSICSLARSSWNLHSIAVA 86
V +P GAI+ F GTTR+ F+GK V+ L YE+Y+ MA ++ ICS R W + IAV
Sbjct: 26 VISPLCGAISLFVGTTRNNFEGKKVISLEYEAYLPMAENEVRKICSDIRQKWPVKHIAVF 85
Query: 87 HRLGPVPVGETSVFIAVSAVHRADALDACKFLIDELKASVPIWKKEVY 134
HRLG VPV E S+ IAVS+ HRA +L+A + ID LKA VPIWKKE+Y
Sbjct: 86 HRLGLVPVSEASIIIAVSSAHRAASLEAVSYAIDTLKAKVPIWKKEIY 133
>pdb|2WP4|A Chain A, Crystal Structure Of Rv3119 From Mycobacterium
Tuberculosis
pdb|2WP4|B Chain B, Crystal Structure Of Rv3119 From Mycobacterium
Tuberculosis
Length = 147
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 67/126 (53%)
Query: 15 NNPVDMTKYMTYVSAPQAGAIATFSGTTRDTFDGKIVVELRYESYVSMAIRCIKSICSLA 74
+ P+ + + + VS P+ G I F G RD G V L YE+Y M IR + SI
Sbjct: 17 DQPLSVDEVLAAVSGPEQGGIVIFVGNVRDHNAGHDVTRLFYEAYPPMVIRTLMSIIGRC 76
Query: 75 RSSWNLHSIAVAHRLGPVPVGETSVFIAVSAVHRADALDACKFLIDELKASVPIWKKEVY 134
+AVAHR G + +G+ +V I SA HRA+A DA + I+ LK VPIWKKE
Sbjct: 77 EDKAEGVRVAVAHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQEVPIWKKEFS 136
Query: 135 SNGEVW 140
S G W
Sbjct: 137 STGAEW 142
>pdb|2QIE|A Chain A, Staphylococcus Aureus Molybdopterin Synthase In Complex
With Precursor Z
pdb|2QIE|H Chain H, Staphylococcus Aureus Molybdopterin Synthase In Complex
With Precursor Z
pdb|2QIE|K Chain K, Staphylococcus Aureus Molybdopterin Synthase In Complex
With Precursor Z
pdb|2QIE|E Chain E, Staphylococcus Aureus Molybdopterin Synthase In Complex
With Precursor Z
Length = 148
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 67/126 (53%)
Query: 16 NPVDMTKYMTYVSAPQAGAIATFSGTTRDTFDGKIVVELRYESYVSMAIRCIKSICSLAR 75
P+ +Y + GA+ F+G R+ G L YE+Y+ MA + + I
Sbjct: 9 EPIQTEQYREFTINEYQGAVVVFTGHVREWTKGVKTEYLEYEAYIPMAEKKLAQIGDEIN 68
Query: 76 SSWNLHSIAVAHRLGPVPVGETSVFIAVSAVHRADALDACKFLIDELKASVPIWKKEVYS 135
W ++ HR+GP+ + + +V IAVS+ HR DA A ++ I+ +K VPIWKKE++
Sbjct: 69 EKWPGTITSIVHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPIWKKEIWE 128
Query: 136 NGEVWK 141
+G W+
Sbjct: 129 DGSKWQ 134
>pdb|2Q5W|E Chain E, The X-Ray Crystal Structure Of Molybdopterin Synthase From
Staphylococcus Aureus
Length = 149
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 67/125 (53%)
Query: 17 PVDMTKYMTYVSAPQAGAIATFSGTTRDTFDGKIVVELRYESYVSMAIRCIKSICSLARS 76
P+ +Y + GA+ F+G R+ G L YE+Y+ MA + + I
Sbjct: 11 PIQTEQYREFTINEYQGAVVVFTGHVREWTKGVKTEYLEYEAYIPMAEKKLAQIGDEINE 70
Query: 77 SWNLHSIAVAHRLGPVPVGETSVFIAVSAVHRADALDACKFLIDELKASVPIWKKEVYSN 136
W ++ HR+GP+ + + +V IAVS+ HR DA A ++ I+ +K VPIWKKE++ +
Sbjct: 71 KWPGTITSIVHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPIWKKEIWED 130
Query: 137 GEVWK 141
G W+
Sbjct: 131 GSKWQ 135
>pdb|1FM0|E Chain E, Molybdopterin Synthase (MoadMOAE)
pdb|1FMA|E Chain E, Molybdopterin Synthase (MoadMOAE)
pdb|1NVI|E Chain E, Orthorhombic Crystal Form Of Molybdopterin Synthase
Length = 150
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 61/113 (53%)
Query: 33 GAIATFSGTTRDTFDGKIVVELRYESYVSMAIRCIKSICSLARSSWNLHSIAVAHRLGPV 92
GA+ TF+G R+ G V L E Y M + + I AR+ W L + V HR+G +
Sbjct: 29 GAVVTFTGKVRNHNLGDSVNALTLEHYPGMTEKALAEIVDEARNRWPLGRVTVIHRIGEL 88
Query: 93 PVGETSVFIAVSAVHRADALDACKFLIDELKASVPIWKKEVYSNGEVWKENSE 145
G+ VF+ V++ HR+ A +A +F++D LK P WK+E G+ W E E
Sbjct: 89 WPGDEIVFVGVTSAHRSSAFEAGQFIMDYLKTRAPFWKREATPEGDRWVEARE 141
>pdb|3BII|E Chain E, Crystal Structure Of Activated Mpt Synthase
Length = 149
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 61/113 (53%)
Query: 33 GAIATFSGTTRDTFDGKIVVELRYESYVSMAIRCIKSICSLARSSWNLHSIAVAHRLGPV 92
GA+ TF+G R+ G V L E Y M + + I AR+ W L + V HR+G +
Sbjct: 28 GAVVTFTGKVRNHNLGDSVNALTLEHYPGMTEKALAEIVDEARNRWPLGRVTVIHRIGEL 87
Query: 93 PVGETSVFIAVSAVHRADALDACKFLIDELKASVPIWKKEVYSNGEVWKENSE 145
G+ VF+ V++ HR+ A +A +F++D LK P WK+E G+ W E E
Sbjct: 88 WPGDEIVFVGVTSAHRSSAFEAGQFIMDYLKTRAPFWKREATPEGDRWVEARE 140
>pdb|1NVJ|A Chain A, Deletion Mutant (Delta 141) Of Molybdopterin Synthase
pdb|1NVJ|B Chain B, Deletion Mutant (Delta 141) Of Molybdopterin Synthase
pdb|1NVJ|C Chain C, Deletion Mutant (Delta 141) Of Molybdopterin Synthase
pdb|1NVJ|D Chain D, Deletion Mutant (Delta 141) Of Molybdopterin Synthase
pdb|1NVJ|E Chain E, Deletion Mutant (Delta 141) Of Molybdopterin Synthase
pdb|1NVJ|F Chain F, Deletion Mutant (Delta 141) Of Molybdopterin Synthase
Length = 140
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 60/110 (54%)
Query: 33 GAIATFSGTTRDTFDGKIVVELRYESYVSMAIRCIKSICSLARSSWNLHSIAVAHRLGPV 92
GA+ TF+G R+ G V L E Y M + + I AR+ W L + V HR+G +
Sbjct: 29 GAVVTFTGKVRNHNLGDSVNALTLEHYPGMTEKALAEIVDEARNRWPLGRVTVIHRIGEL 88
Query: 93 PVGETSVFIAVSAVHRADALDACKFLIDELKASVPIWKKEVYSNGEVWKE 142
G+ VF+ V++ HR+ A +A +F++D LK P WK+E G+ W E
Sbjct: 89 WPGDEIVFVGVTSAHRSSAFEAGQFIMDYLKTRAPFWKREATPEGDRWVE 138
>pdb|2OMD|A Chain A, Crystal Structure Of Molybdopterin Converting Factor
Subunit 2 (Aq_2181) From Aquifex Aeolicus Vf5
pdb|2OMD|B Chain B, Crystal Structure Of Molybdopterin Converting Factor
Subunit 2 (Aq_2181) From Aquifex Aeolicus Vf5
Length = 154
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 33 GAIATFSGTTRDT-FDGKIVVELRYESYVSMAIRCIKSICSLARSSWNLHSIAVAHRLGP 91
GA F G R+ DG + L YE+Y MAI+ ++ I + + + + HRLG
Sbjct: 32 GAQVLFLGIPRNAPEDGGNIEALEYEAYPEMAIKEMEKIRQETIEKFGVKEVFIHHRLGL 91
Query: 92 VPVGETSVFIAVSAVHRADALDACKFLIDELKASVPIWKKEVYSNG 137
V +GE S + HR + AC++ +DE K VPIWKKE++ G
Sbjct: 92 VKIGEPSFLVLAVGGHREETFKACRYAVDETKKRVPIWKKEIFKEG 137
>pdb|3RPF|A Chain A, Protein-Protein Complex Of Subunit 1 And 2 Of
Molybdopterin-Converting Factor From Helicobacter Pylori
26695
pdb|3RPF|B Chain B, Protein-Protein Complex Of Subunit 1 And 2 Of
Molybdopterin-Converting Factor From Helicobacter Pylori
26695
Length = 148
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 83 IAVAHRLGPVPVGETSVFIAVSAVHRADALDACKFLIDELKASVPIWKKEVYSNGEVW-K 141
+ AH LG V +G++S +R +AL+ + I++ K + PIWK ++ N ++ K
Sbjct: 76 LKXAHSLGDVLIGQSSFLCVSXGKNRKNALELYENFIEDFKHNAPIWKYDLIHNKRIYAK 135
Query: 142 ENSE 145
E S
Sbjct: 136 ERSH 139
>pdb|1Y79|1 Chain 1, Crystal Structure Of The E.Coli Dipeptidyl
Carboxypeptidase Dcp In Complex With A Peptidic
Inhibitor
Length = 680
Score = 33.5 bits (75), Expect = 0.076, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 97 TSVFIAVSAVHRADALDACKFLIDELKASVPIWKKEVYSNGEVWKENSEFMERRLDLGKK 156
TSVF A++A H D L + L ++ A + ++Y NGE++ +RR L
Sbjct: 72 TSVFFAMTAAHTNDEL---QRLDEQFSAELAELANDIYLNGELFARVDAVWQRRESL--- 125
Query: 157 DGICCGSGREVPVKSHARKTCCGAKVKVDDEG 188
G+ S R V V H R GAK+ D+
Sbjct: 126 -GLDSESIRLVEV-IHQRFVLAGAKLAQADKA 155
>pdb|4EGE|A Chain A, Crystal Structure Of Dipeptidase Pepe From Mycobacterium
Ulcerans
Length = 378
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 8/106 (7%)
Query: 43 RDTFDGKIVVELRYESYVSMAIRCIKSICSLARSSWNLHSIAVAHRLGPVPVGETSVFIA 102
RD DG +L V++A+ + ++ S LH + +A LG +PV T V
Sbjct: 92 RDWVDGDDPYQL-----VAVALGGAPAATAVTDSMPALHLLPLADALGVLPVLATDVLRQ 146
Query: 103 VSAVHRA---DALDACKFLIDELKASVPIWKKEVYSNGEVWKENSE 145
+ V A DAL ID + A VP + + +V + +E
Sbjct: 147 LRMVKEAAEVDALAKAGAAIDRVHARVPAFLVPGRTEAQVAADIAE 192
>pdb|3H41|A Chain A, Crystal Structure Of A NlpcP60 FAMILY PROTEIN (BCE_2878)
FROM Bacillus Cereus Atcc 10987 At 1.79 A Resolution
Length = 311
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 96 ETSVFIAVSAVHRADALDACKFLIDELKASVPI----WKKEVYSNGEVWKENSEFMERRL 151
++ FI VSA A D+ + ID A+ P+ W K + ++W N+ +E +
Sbjct: 6 DSKAFIDVSAATLWTAPDSLR-PIDVPSATNPVDLWKWTKSXTLDEKLWLTNANKLETQA 64
Query: 152 DLGKKDGICCGSGREVPVKSHARKT 176
LG++ + G V V H + T
Sbjct: 65 LLGQEVTVVDKKGDWVKVLVHGQPT 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,901,728
Number of Sequences: 62578
Number of extensions: 230449
Number of successful extensions: 467
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 457
Number of HSP's gapped (non-prelim): 12
length of query: 196
length of database: 14,973,337
effective HSP length: 94
effective length of query: 102
effective length of database: 9,091,005
effective search space: 927282510
effective search space used: 927282510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)