BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029284
         (196 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ZUE|A Chain A, Rabbit Hemorrhagic Disease Virus (Rhdv)capsid Protein
 pdb|3ZUE|B Chain B, Rabbit Hemorrhagic Disease Virus (Rhdv)capsid Protein
 pdb|3ZUE|C Chain C, Rabbit Hemorrhagic Disease Virus (Rhdv)capsid Protein
          Length = 579

 Score = 27.3 bits (59), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 13  ALHLIAFVFA-VGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVN 71
           A +++ F +A  G+      ++V PD + +M++  ++       G   FG +  S +   
Sbjct: 309 ATNVLQFWYANAGSAVDNPISQVAPDGFPDMSFVPFNGPGIPAAGWVGFGAIWNSNSGAP 368

Query: 72  GVTRCLCFGKGLVTG 86
            VT    +  G  TG
Sbjct: 369 NVTTVQAYELGFATG 383


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.135    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,114,883
Number of Sequences: 62578
Number of extensions: 168323
Number of successful extensions: 472
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 472
Number of HSP's gapped (non-prelim): 1
length of query: 196
length of database: 14,973,337
effective HSP length: 94
effective length of query: 102
effective length of database: 9,091,005
effective search space: 927282510
effective search space used: 927282510
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)