Query 029284
Match_columns 196
No_of_seqs 106 out of 223
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 10:26:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029284.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029284hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06749 DUF1218: Protein of u 100.0 5E-30 1.1E-34 192.6 8.4 96 58-156 1-97 (97)
2 cd07912 Tweety_N N-terminal do 91.2 1.1 2.4E-05 41.9 8.3 32 52-83 38-70 (418)
3 PF05478 Prominin: Prominin; 87.2 2.8 6.2E-05 42.0 8.4 72 45-118 407-491 (806)
4 PF07344 Amastin: Amastin surf 85.7 7.3 0.00016 31.2 8.6 89 6-111 67-155 (155)
5 PTZ00201 amastin surface glyco 83.8 5.8 0.00013 33.4 7.4 96 44-160 66-166 (192)
6 KOG4016 Synaptic vesicle prote 82.4 32 0.00069 29.8 15.4 114 40-169 54-172 (233)
7 PF04906 Tweety: Tweety; Inte 80.1 4.2 9.2E-05 37.7 5.8 31 55-85 22-52 (406)
8 PF09788 Tmemb_55A: Transmembr 78.7 5 0.00011 35.3 5.5 46 73-119 177-223 (256)
9 KOG4433 Tweety transmembrane/c 77.1 2.8 6E-05 40.0 3.7 51 55-105 46-99 (526)
10 PF05360 YiaAB: yiaA/B two hel 75.8 5.3 0.00012 26.7 3.8 44 97-155 2-45 (53)
11 PF05478 Prominin: Prominin; 69.4 21 0.00046 35.9 8.0 24 90-113 140-163 (806)
12 PF06800 Sugar_transport: Suga 65.3 50 0.0011 29.3 8.7 124 50-183 42-176 (269)
13 PF07344 Amastin: Amastin surf 61.1 83 0.0018 25.0 9.3 92 44-159 54-150 (155)
14 PF01284 MARVEL: Membrane-asso 60.4 69 0.0015 23.9 14.7 64 93-161 79-142 (144)
15 PF14798 Ca_hom_mod: Calcium h 57.4 66 0.0014 28.1 8.0 64 48-123 13-76 (251)
16 PF13903 Claudin_2: PMP-22/EMP 55.0 94 0.002 23.8 10.0 28 91-118 102-129 (172)
17 PF13828 DUF4190: Domain of un 52.6 53 0.0012 22.6 5.3 56 52-108 5-60 (62)
18 PTZ00201 amastin surface glyco 47.6 40 0.00087 28.4 4.9 96 6-119 79-178 (192)
19 PF11169 DUF2956: Protein of u 43.4 23 0.00051 27.0 2.6 21 88-108 81-101 (103)
20 PF00822 PMP22_Claudin: PMP-22 41.5 72 0.0016 24.6 5.3 58 52-123 73-130 (166)
21 KOG1292 Xanthine/uracil transp 41.4 50 0.0011 31.8 5.0 65 93-168 209-297 (510)
22 PRK11383 hypothetical protein; 38.5 98 0.0021 25.1 5.5 23 94-116 10-32 (145)
23 COG4858 Uncharacterized membra 38.2 1.9E+02 0.0041 24.8 7.4 59 52-110 122-184 (226)
24 PF04103 CD20: CD20-like famil 33.9 6.4 0.00014 30.1 -1.9 90 9-123 4-93 (150)
25 PRK11383 hypothetical protein; 31.9 1.3E+02 0.0028 24.4 5.2 47 94-155 73-119 (145)
26 PF10267 Tmemb_cc2: Predicted 29.5 1.1E+02 0.0024 28.6 5.2 47 53-100 338-384 (395)
27 PF13903 Claudin_2: PMP-22/EMP 27.0 2.8E+02 0.0061 21.0 9.8 92 5-112 72-171 (172)
28 COG4682 Predicted membrane pro 24.8 1.2E+02 0.0025 24.1 3.7 31 90-121 6-36 (128)
29 PF12273 RCR: Chitin synthesis 22.5 66 0.0014 24.8 2.1 8 181-188 74-81 (130)
30 PF14494 DUF4436: Domain of un 21.8 3.6E+02 0.0079 23.6 6.7 83 4-116 170-252 (256)
31 PF04834 Adeno_E3_14_5: Early 21.1 1.1E+02 0.0024 23.2 2.9 34 133-166 11-49 (97)
No 1
>PF06749 DUF1218: Protein of unknown function (DUF1218); InterPro: IPR009606 This family contains hypothetical plant proteins of unknown function. Family members contain a number of conserved cysteine residues.
Probab=99.96 E-value=5e-30 Score=192.59 Aligned_cols=96 Identities=45% Similarity=0.688 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCCCC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceecCCCccccc
Q 029284 58 SAFGLLLISQAVVNGVTRCLCFGKGLVT-GTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCA 136 (196)
Q Consensus 58 ~A~~~Ll~aqii~~~a~~C~cc~~~~~~-~~~~r~~ai~~~i~SWi~f~iA~~lLl~Ga~~n~~~~~~~~~~~~~~~~C~ 136 (196)
+|++||+++|+++|+++||.||+|+.+| +.++|+++++|+++||++|+||+++|++|+++|++|+|++.++ +++|+
T Consensus 1 ~A~~~L~~aqvi~~~~~gC~cc~~~~~~~~~~~r~~a~~~~v~SWi~f~ia~~~ll~ga~~n~~~~~~~~~~---~~~C~ 77 (97)
T PF06749_consen 1 AAAVFLLAAQVIANVAGGCLCCGKRVSPKSSRNRTLAVVFFVLSWIVFIIAEALLLAGASMNARHTKGNGWF---NPSCY 77 (97)
T ss_pred CHHHHHHHHHHHHHHHhcceEeCCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcccccccccccc---CCccc
Confidence 4899999999999999999999888766 4589999999999999999999999999999999999988664 78999
Q ss_pred cccccchhhhHHHHHHHHHH
Q 029284 137 TLRKGVFAAGAALTLLSLAG 156 (196)
Q Consensus 137 ~~k~GvF~~aa~l~l~t~~~ 156 (196)
++|+|+|++||+|+|+|++|
T Consensus 78 ~~k~GvF~~~a~l~l~t~~f 97 (97)
T PF06749_consen 78 TVKKGVFAGGAVLSLVTALF 97 (97)
T ss_pred ccCCceeeHhHHHHHHHHhC
Confidence 99999999999999999875
No 2
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=91.20 E-value=1.1 Score=41.92 Aligned_cols=32 Identities=13% Similarity=0.032 Sum_probs=19.1
Q ss_pred hhHH-HHHHHHHHHHHHHHHHHHhccccccCCC
Q 029284 52 STVY-GLSAFGLLLISQAVVNGVTRCLCFGKGL 83 (196)
Q Consensus 52 A~~l-Gi~A~~~Ll~aqii~~~a~~C~cc~~~~ 83 (196)
|+++ |..|++.+++.-++..+...|.||||+.
T Consensus 38 Sv~~~a~iaavwlil~ll~ll~~~~~~CCcr~~ 70 (418)
T cd07912 38 SLLILASIPAACLILSLLFLLVYLITRCCDRKP 70 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 5544 5566666666666666666666666553
No 3
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=87.19 E-value=2.8 Score=42.04 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=43.3
Q ss_pred eecCCChh-hHHHHHHHHHHHHHHHHHHHHhcccccc-CC-CCCCC-------CchH---HHHHHHHHHHHHHHHHHHHH
Q 029284 45 CVYSTDAS-TVYGLSAFGLLLISQAVVNGVTRCLCFG-KG-LVTGT-------SSTT---WAVFFFIVSWVSFLGAEACL 111 (196)
Q Consensus 45 C~Yps~~A-~~lGi~A~~~Ll~aqii~~~a~~C~cc~-~~-~~~~~-------~~r~---~ai~~~i~SWi~f~iA~~lL 111 (196)
-+|.++.- .+++++..++|++.-.+.-...| ||| ++ ..|+. +.+. -..+.|+++|+..+++.+.|
T Consensus 407 ~~y~~yR~~~~lil~~~llLIv~~~~lGLl~G--~~G~~~~~~p~~r~c~~~tGg~~Lm~gv~~~Flf~~~l~l~~~~~F 484 (806)
T PF05478_consen 407 EKYDSYRWIVGLILCCVLLLIVLCLLLGLLCG--CCGYRRRADPTDRGCSSNTGGNFLMAGVGLSFLFSWFLMLLVLFYF 484 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccCCCCCCCcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34544443 35566666666654444334444 455 22 22321 2222 25667899999999999999
Q ss_pred HHHhhhc
Q 029284 112 LAGSARN 118 (196)
Q Consensus 112 l~Ga~~n 118 (196)
+.|....
T Consensus 485 l~G~~~~ 491 (806)
T PF05478_consen 485 LVGGNTY 491 (806)
T ss_pred HHHhhhh
Confidence 9999864
No 4
>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long).In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.
Probab=85.71 E-value=7.3 Score=31.20 Aligned_cols=89 Identities=17% Similarity=0.044 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccceeeeccCCCCcceeecCCChhhHHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Q 029284 6 SIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVT 85 (196)
Q Consensus 6 ~v~~vv~~LgliAfiLgi~AE~~r~~~~~v~~~~~~~~~C~Yps~~A~~lGi~A~~~Ll~aqii~~~a~~C~cc~~~~~~ 85 (196)
...++.++++..|+++|+..=...+ ..+-+...|.+.+++++++.=++....=.=..|. +.++
T Consensus 67 afaIisi~~~~~a~v~g~~~l~~~~----------------~~r~v~l~L~~~~~~~~~v~wa~~v~~Y~~~~C~-~~~~ 129 (155)
T PF07344_consen 67 AFAIISIFVYGAAFVLGVLLLCCCS----------------CLRWVCLVLNIVGIVTLLVVWALMVVVYYGGFCG-ALKS 129 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc-CccC
Confidence 5677888999999999998644432 2233567788888888877766555443333343 3222
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHH
Q 029284 86 GTSSTTWAVFFFIVSWVSFLGAEACL 111 (196)
Q Consensus 86 ~~~~r~~ai~~~i~SWi~f~iA~~lL 111 (196)
..-+=..+-.+++++|+..+++.+.|
T Consensus 130 ~~~~yg~GF~L~v~aw~l~~i~ii~L 155 (155)
T PF07344_consen 130 RGYKYGAGFALFVAAWCLDIINIIFL 155 (155)
T ss_pred CCcccCccHHHHHHHHHHHHHHHHhC
Confidence 21133458889999999999887654
No 5
>PTZ00201 amastin surface glycoprotein; Provisional
Probab=83.79 E-value=5.8 Score=33.43 Aligned_cols=96 Identities=14% Similarity=0.086 Sum_probs=54.8
Q ss_pred eeecCCCh---hhHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 029284 44 YCVYSTDA---STVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAY 120 (196)
Q Consensus 44 ~C~Yps~~---A~~lGi~A~~~Ll~aqii~~~a~~C~cc~~~~~~~~~~r~~ai~~~i~SWi~f~iA~~lLl~Ga~~n~~ 120 (196)
+|...++. |-++.+.|+++..+|-+++-....|+. ..|++...+.+++ ++..+..|+.+.-.+
T Consensus 66 ~C~~rr~~Fr~aqAfaIISI~v~~aA~vlg~~~l~cc~---------~lr~vcl~Lnivg-----~vt~~VvWa~mv~~Y 131 (192)
T PTZ00201 66 NCPARILQFRVAQALAVISILVYGAAFVLGLVLLYGCT---------IHRWVCLALNIVG-----AVTLGVVWAAMVVTY 131 (192)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---------hHHHHHHHHHHHH-----HHHHheeeeeEEEEE
Confidence 35544433 667888999888888888777665421 2455555555544 233455667665544
Q ss_pred ccccceecCCCccccccccc-c-chhhhHHHHHHHHHHHHHH
Q 029284 121 HTKYRKIFGGGDLSCATLRK-G-VFAAGAALTLLSLAGSILY 160 (196)
Q Consensus 121 ~~~~~~~~~~~~~~C~~~k~-G-vF~~aa~l~l~t~~~~i~y 160 (196)
+++ ..+.|+..|+ + -|+.|=.|-+++-.+.++-
T Consensus 132 ~~~-------~~~~C~~~~~~~~~yGaGF~Llv~AW~L~iin 166 (192)
T PTZ00201 132 YKD-------DGPLCPRVRDMGYRFGTGFALLVVAWILDILN 166 (192)
T ss_pred EcC-------CCccccccccCCCCccCcHHHHHHHHHHHHHH
Confidence 432 2346887776 4 3555544444444444433
No 6
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.42 E-value=32 Score=29.76 Aligned_cols=114 Identities=16% Similarity=0.176 Sum_probs=59.7
Q ss_pred CCcceeecCCCh-hhHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCC--Cch-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 029284 40 DEMTYCVYSTDA-STVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGT--SST-TWAVFFFIVSWVSFLGAEACLLAGS 115 (196)
Q Consensus 40 ~~~~~C~Yps~~-A~~lGi~A~~~Ll~aqii~~~a~~C~cc~~~~~~~~--~~r-~~ai~~~i~SWi~f~iA~~lLl~Ga 115 (196)
.....|.|.+|+ |-.+|++.-++..++-+.-.+.--..- +..+. ++| .++-+-+-..|...-.---|+||-
T Consensus 54 ~~~~~Ciynrn~~ACsyg~avG~~Afla~~~flvlD~~f~----qISsv~~RkraVl~Dl~~SalwtflwfvGFc~l~n- 128 (233)
T KOG4016|consen 54 SGEEFCIYNRNSNACSYGVAVGVLAFLACLAFLVLDVYFP----QISSVKDRKRAVLADLGVSALWAFLWFVGFCFLAN- 128 (233)
T ss_pred CCceEEEECCCCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 356789999988 446666666666666555555433211 11222 333 345555555564433333455543
Q ss_pred hhcccccccceecCCCccccccccccchhhhHHHHHHHHHHHHHHHH-HHhhccC
Q 029284 116 ARNAYHTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLAGSILYYW-AHTRADT 169 (196)
Q Consensus 116 ~~n~~~~~~~~~~~~~~~~C~~~k~GvF~~aa~l~l~t~~~~i~yYv-~~~~a~~ 169 (196)
-+.....|. -.++.|==-+|-.++|++.+.|...=+ ..++=|+
T Consensus 129 qwqvs~p~~-----------~~~~a~saraaIafsffSilsW~~~A~lA~qR~~~ 172 (233)
T KOG4016|consen 129 QWQVSKPKE-----------NPLGAGSARAAIAFSFFSILSWGGQAVLAFQRYRI 172 (233)
T ss_pred HhhccCCCC-----------CCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111111121 244555445666788999988876544 4444443
No 7
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=80.13 E-value=4.2 Score=37.72 Aligned_cols=31 Identities=16% Similarity=0.071 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCCCC
Q 029284 55 YGLSAFGLLLISQAVVNGVTRCLCFGKGLVT 85 (196)
Q Consensus 55 lGi~A~~~Ll~aqii~~~a~~C~cc~~~~~~ 85 (196)
+|..+++.|.+.-+...+-.-|.||+|+.++
T Consensus 22 la~v~~~~l~l~Ll~ll~yl~~~CC~r~~~~ 52 (406)
T PF04906_consen 22 LASVAAACLALSLLFLLIYLICRCCCRRPRE 52 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Confidence 4566666777777766676777777766543
No 8
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=78.73 E-value=5 Score=35.29 Aligned_cols=46 Identities=26% Similarity=0.358 Sum_probs=31.3
Q ss_pred HhccccccCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 029284 73 VTRCLCFGKGLVTG-TSSTTWAVFFFIVSWVSFLGAEACLLAGSARNA 119 (196)
Q Consensus 73 a~~C~cc~~~~~~~-~~~r~~ai~~~i~SWi~f~iA~~lLl~Ga~~n~ 119 (196)
..+|+.|.|--.-+ .-.|..+++|+++. +.|++..+-+.+|+...+
T Consensus 177 lARCPHCrKvSSVG~~faRkR~i~f~llg-llfliiaigltvGT~~~A 223 (256)
T PF09788_consen 177 LARCPHCRKVSSVGPRFARKRAIIFFLLG-LLFLIIAIGLTVGTWTYA 223 (256)
T ss_pred cccCCCCceeccccchHhhhHHHHHHHHH-HHHHHHHHHHhhhhHHHH
Confidence 47899987653333 14678889999998 555556666777776544
No 9
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=77.13 E-value=2.8 Score=40.03 Aligned_cols=51 Identities=14% Similarity=0.041 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCCCC---CCCchHHHHHHHHHHHHHHH
Q 029284 55 YGLSAFGLLLISQAVVNGVTRCLCFGKGLVT---GTSSTTWAVFFFIVSWVSFL 105 (196)
Q Consensus 55 lGi~A~~~Ll~aqii~~~a~~C~cc~~~~~~---~~~~r~~ai~~~i~SWi~f~ 105 (196)
+|..++.+|.+.-+...+..-|.||+|+..+ ..+.|-++..++|++=+++.
T Consensus 46 la~l~aa~l~l~Ll~ll~yli~~cC~Rr~~~~~~~~~~~c~s~~l~I~tl~cca 99 (526)
T KOG4433|consen 46 LAALAAACLGLSLLFLLFYLICRCCCRRETTGRKRRRVRCLSWSLIIATLMCCA 99 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCCcceeeehHHHHHHHHHH
Confidence 3777788888888877777788888877522 22334344445555544443
No 10
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=75.80 E-value=5.3 Score=26.66 Aligned_cols=44 Identities=32% Similarity=0.307 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccceecCCCccccccccccchhhhHHHHHHHHH
Q 029284 97 FIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLA 155 (196)
Q Consensus 97 ~i~SWi~f~iA~~lLl~Ga~~n~~~~~~~~~~~~~~~~C~~~k~GvF~~aa~l~l~t~~ 155 (196)
...+|+.|+++..+++.|-- |.+..- --||.+..+-.+++.++.
T Consensus 2 ~~~~~~~f~i~~~~~~iGl~-~~~~~l--------------~~KGy~~~~~l~~l~s~~ 45 (53)
T PF05360_consen 2 VGQSWISFGISIVLMLIGLW-NAPLDL--------------SEKGYYAMGLLFLLFSAF 45 (53)
T ss_pred hhHHHHHHHHHHHHHHHHHH-hCCCCH--------------HHHHHHHHHHHHHHHHHH
Confidence 46799999999999999986 554432 257888888777776643
No 11
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=69.36 E-value=21 Score=35.95 Aligned_cols=24 Identities=8% Similarity=0.407 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 029284 90 TTWAVFFFIVSWVSFLGAEACLLA 113 (196)
Q Consensus 90 r~~ai~~~i~SWi~f~iA~~lLl~ 113 (196)
+.+++++++++.+..+-.+..|++
T Consensus 140 ~~l~~~L~~~~~~il~g~i~aF~~ 163 (806)
T PF05478_consen 140 GCLGILLLLLTLIILFGVICAFVA 163 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777775554433333433
No 12
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=65.29 E-value=50 Score=29.26 Aligned_cols=124 Identities=19% Similarity=0.238 Sum_probs=75.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCc-----hHHHHHHH-----HHHHHHHHHHHHHHHHHhhhcc
Q 029284 50 DASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSS-----TTWAVFFF-----IVSWVSFLGAEACLLAGSARNA 119 (196)
Q Consensus 50 ~~A~~lGi~A~~~Ll~aqii~~~a~~C~cc~~~~~~~~~~-----r~~ai~~~-----i~SWi~f~iA~~lLl~Ga~~n~ 119 (196)
..++..++.+-++-.++|+.--.+-....-.+..|-|++- ..+++++| ...|+.-.+|.++++.|+...+
T Consensus 42 ~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts 121 (269)
T PF06800_consen 42 GTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS 121 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence 3578889999999999999777776666666666555322 22222221 1257888889999999999999
Q ss_pred cccccceecCCCccccccccccchhhhHHHHHHHHHHHHHHHHHHhh-ccCCCCCCCCCCccccc
Q 029284 120 YHTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLAGSILYYWAHTR-ADTGGWEKHRNEGLGMA 183 (196)
Q Consensus 120 ~~~~~~~~~~~~~~~C~~~k~GvF~~aa~l~l~t~~~~i~yYv~~~~-a~~~~~~~~~~~~i~M~ 183 (196)
.+.++... ..+=...|+|+. +-+++++.-.. |...-+ .+.++|+---|++|||-
T Consensus 122 ~~~~~~~~----~~~~~~~~kgi~-----~Ll~stigy~~-Y~~~~~~~~~~~~~~~lPqaiGm~ 176 (269)
T PF06800_consen 122 YQDKKSDK----SSSKSNMKKGIL-----ALLISTIGYWI-YSVIPKAFHVSGWSAFLPQAIGML 176 (269)
T ss_pred cccccccc----cccccchhhHHH-----HHHHHHHHHHH-HHHHHHhcCCChhHhHHHHHHHHH
Confidence 88875421 011123344443 34445444444 444444 34455554444678775
No 13
>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long).In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.
Probab=61.07 E-value=83 Score=25.05 Aligned_cols=92 Identities=15% Similarity=0.165 Sum_probs=55.8
Q ss_pred eeecCCCh---hhHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 029284 44 YCVYSTDA---STVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAY 120 (196)
Q Consensus 44 ~C~Yps~~---A~~lGi~A~~~Ll~aqii~~~a~~C~cc~~~~~~~~~~r~~ai~~~i~SWi~f~iA~~lLl~Ga~~n~~ 120 (196)
.|...++. +-++.+.+.++..++-+++-....|. + ..|.....+.++++++.. ..|+.+..-+
T Consensus 54 ~C~~~~~~f~aa~afaIisi~~~~~a~v~g~~~l~~~--------~-~~r~v~l~L~~~~~~~~~-----v~wa~~v~~Y 119 (155)
T PF07344_consen 54 NCPQRRSRFRAAQAFAIISIFVYGAAFVLGVLLLCCC--------S-CLRWVCLVLNIVGIVTLL-----VVWALMVVVY 119 (155)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------h-hHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 67655544 67888889888888888887766542 1 466777777777766654 4455555544
Q ss_pred ccccceecCCCcccccccccc--chhhhHHHHHHHHHHHHH
Q 029284 121 HTKYRKIFGGGDLSCATLRKG--VFAAGAALTLLSLAGSIL 159 (196)
Q Consensus 121 ~~~~~~~~~~~~~~C~~~k~G--vF~~aa~l~l~t~~~~i~ 159 (196)
+. +.|...+++ -|+.|=.|.+++=++.++
T Consensus 120 ~~----------~~C~~~~~~~~~yg~GF~L~v~aw~l~~i 150 (155)
T PF07344_consen 120 YG----------GFCGALKSRGYKYGAGFALFVAAWCLDII 150 (155)
T ss_pred cc----------CCCcCccCCCcccCccHHHHHHHHHHHHH
Confidence 42 267655443 355555555555444433
No 14
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain. The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].
Probab=60.39 E-value=69 Score=23.93 Aligned_cols=64 Identities=22% Similarity=0.133 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccccceecCCCccccccccccchhhhHHHHHHHHHHHHHHH
Q 029284 93 AVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLAGSILYY 161 (196)
Q Consensus 93 ai~~~i~SWi~f~iA~~lLl~Ga~~n~~~~~~~~~~~~~~~~C~~~k~GvF~~aa~l~l~t~~~~i~yY 161 (196)
-...-.+-++.++++.+.+.......+-. ++ ++++......+.+...++++|++++.++.++.-
T Consensus 79 ~~~~~~v~~il~l~a~~~~a~~~~~~~~~--~~---~~~~~~~~~~~~~~~~Aa~~f~~~~~~l~~~s~ 142 (144)
T PF01284_consen 79 EFIFDAVFAILWLAAFIALAAYLSDHSCS--NT---GNDYSYSGCSRCGAWKAAAAFGFLNWLLFIVSA 142 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccc--cC---CCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555444431111 00 112223344455667799999999988887654
No 15
>PF14798 Ca_hom_mod: Calcium homeostasis modulator
Probab=57.39 E-value=66 Score=28.13 Aligned_cols=64 Identities=22% Similarity=0.185 Sum_probs=48.5
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 029284 48 STDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTK 123 (196)
Q Consensus 48 ps~~A~~lGi~A~~~Ll~aqii~~~a~~C~cc~~~~~~~~~~r~~ai~~~i~SWi~f~iA~~lLl~Ga~~n~~~~~ 123 (196)
.++.+++.|+.+++-+.--|+.-++.=.|||- |+ .|-.-+..++ ++-|.++|+.|-..|++-.+
T Consensus 13 ~~~~~~~ngi~~llt~g~e~lfs~~~F~CPC~-----~~-~N~~YGl~fL------lvPAl~LfllG~~ln~~~W~ 76 (251)
T PF14798_consen 13 SHSESLGNGICALLTAGGEQLFSSFVFSCPCS-----PG-WNFLYGLVFL------LVPALVLFLLGYLLNRRTWR 76 (251)
T ss_pred hcchhHHHHHHHHHHHHHHhhhheeeeecCCC-----Cc-ccchhHhHHH------HHHHHHHHHHHHHHhcccch
Confidence 35678899999999999999999999999974 22 3444445444 44589999999999986544
No 16
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=55.04 E-value=94 Score=23.78 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 029284 91 TWAVFFFIVSWVSFLGAEACLLAGSARN 118 (196)
Q Consensus 91 ~~ai~~~i~SWi~f~iA~~lLl~Ga~~n 118 (196)
..+.++++++.++.+++.+.+..--..|
T Consensus 102 ~~~~~~~~~ag~~~l~~l~~~~~~~~~~ 129 (172)
T PF13903_consen 102 LFAGILFILAGLCILIALIVFVVSVNYE 129 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788899898888877776655544
No 17
>PF13828 DUF4190: Domain of unknown function (DUF4190)
Probab=52.57 E-value=53 Score=22.59 Aligned_cols=56 Identities=14% Similarity=0.132 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 029284 52 STVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAE 108 (196)
Q Consensus 52 A~~lGi~A~~~Ll~aqii~~~a~~C~cc~~~~~~~~~~r~~ai~~~i~SWi~f~iA~ 108 (196)
++.+|+.+.+++.+.- +.-+..|...-.+-++..++.|.+|+.=.+++|+..+++.
T Consensus 5 slvlgi~~~~~~~~~~-i~aiilG~ial~~i~r~~~~G~g~A~aGivlG~i~~~~~v 60 (62)
T PF13828_consen 5 SLVLGILGLFLCGLLG-IVAIILGHIALRQIRRSGQRGRGMAIAGIVLGYIGIVLAV 60 (62)
T ss_pred HHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHH
Confidence 5566777666632222 2222333333333233335788999999999998877654
No 18
>PTZ00201 amastin surface glycoprotein; Provisional
Probab=47.58 E-value=40 Score=28.40 Aligned_cols=96 Identities=14% Similarity=0.030 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccceeeeccCCCCcceeecCCChhhHHHHHHHHHHHHHHHHHHHHhcc----ccccC
Q 029284 6 SIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRC----LCFGK 81 (196)
Q Consensus 6 ~v~~vv~~LgliAfiLgi~AE~~r~~~~~v~~~~~~~~~C~Yps~~A~~lGi~A~~~Ll~aqii~~~a~~C----~cc~~ 81 (196)
...++.++++.+|++||+..=.. |...+=-...|.+.+++.+.+.=+. ++.+-. ..|.+
T Consensus 79 AfaIISI~v~~aA~vlg~~~l~c----------------c~~lr~vcl~Lnivg~vt~~VvWa~-mv~~Y~~~~~~~C~~ 141 (192)
T PTZ00201 79 ALAVISILVYGAAFVLGLVLLYG----------------CTIHRWVCLALNIVGAVTLGVVWAA-MVVTYYKDDGPLCPR 141 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc----------------cchHHHHHHHHHHHHHHHHheeeee-EEEEEEcCCCccccc
Confidence 46678888999999999865332 2111122334455554444443331 111111 01211
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 029284 82 GLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNA 119 (196)
Q Consensus 82 ~~~~~~~~r~~ai~~~i~SWi~f~iA~~lLl~Ga~~n~ 119 (196)
.+...-+=.-+-.+++++|+..+|..+.++..-..+.
T Consensus 142 -~~~~~~~yGaGF~Llv~AW~L~iinii~lllp~~~~~ 178 (192)
T PTZ00201 142 -VRDMGYRFGTGFALLVVAWILDILNIIFLLLPCTVPA 178 (192)
T ss_pred -cccCCCCccCcHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 1110012234688999999999999999998764433
No 19
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=43.40 E-value=23 Score=27.03 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=15.2
Q ss_pred CchHHHHHHHHHHHHHHHHHH
Q 029284 88 SSTTWAVFFFIVSWVSFLGAE 108 (196)
Q Consensus 88 ~~r~~ai~~~i~SWi~f~iA~ 108 (196)
....+.-.++++||+-|++-+
T Consensus 81 ~~~~LPW~LL~lSW~gF~~Y~ 101 (103)
T PF11169_consen 81 RSSWLPWGLLVLSWIGFIAYI 101 (103)
T ss_pred cccchhHHHHHHHHHHHHHHH
Confidence 344455669999999998544
No 20
>PF00822 PMP22_Claudin: PMP-22/EMP/MP20/Claudin family; InterPro: IPR004031 Several vertebrate small integral membrane glycoproteins are evolutionary related [, , ], including eye lens specific membrane protein 20 (MP20 or MP19); epithelial membrane protein-1 (EMP-1), which is also known as tumor-associated membrane protein (TMP) or as squamous cell-specific protein Cl-20; epithelial membrane protein-2 (EMP-2), which is also known as XMP; epithelial membrane protein-3 (EMP-3), also known as YMP; and peripheral myelin protein 22 (PMP-22), which is expressed in many tissues but mainly by Schwann cells as a component of myelin of the peripheral nervous system (PNS). PMP-22 probably plays a role both in myelinization and in cell proliferation. Mutations affecting PMP-22 are associated with hereditary motor and sensory neuropathies such as Charcot-Marie-Tooth disease type 1A (CMT-1A) in human or the trembler phenotype in mice. The proteins of this family are about 160 to 173 amino acid residues in size, and contain four transmembrane segments. PMP-22, EMP-1, -2 and -3 are highly similar, while MP20 is more distantly related. This family also includes the claudins, which are components of tight junctions.; GO: 0016020 membrane
Probab=41.45 E-value=72 Score=24.63 Aligned_cols=58 Identities=14% Similarity=0.074 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 029284 52 STVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTK 123 (196)
Q Consensus 52 A~~lGi~A~~~Ll~aqii~~~a~~C~cc~~~~~~~~~~r~~ai~~~i~SWi~f~iA~~lLl~Ga~~n~~~~~ 123 (196)
+-++-+.+.++..++-++......|. .+...+. . +.+.+++|.++.+.+.+.-..+..
T Consensus 73 ~r~l~i~s~il~~l~~~l~~~g~~~~--~~~~~~~----~--------ag~l~~~agl~~l~~~~~y~~~~~ 130 (166)
T PF00822_consen 73 ARALMILSIILGFLGLILALFGLCCT--KRGPRPK----V--------AGILFILAGLCLLIAVSWYTAVIV 130 (166)
T ss_pred HHHHhHHHHHHHHHHHHHHHhccccc--ccCCCCC----c--------ceeeeHHHhhhhheeEEEEeccCc
Confidence 33556677777777766544433332 2111111 1 446677788888888876555544
No 21
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=41.45 E-value=50 Score=31.83 Aligned_cols=65 Identities=25% Similarity=0.331 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccccceecCCCccccccccccchh-------------------hhHH-----
Q 029284 93 AVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFA-------------------AGAA----- 148 (196)
Q Consensus 93 ai~~~i~SWi~f~iA~~lLl~Ga~~n~~~~~~~~~~~~~~~~C~~~k~GvF~-------------------~aa~----- 148 (196)
-++...+.|+. ++++-+.|+-.++.++.+ .+|++.|.+++. ++-+
T Consensus 209 vll~i~ivW~~---~~iLT~tgay~~~~~~t~--------~~~RTD~~~vi~~apWi~vPyP~QwG~P~f~~~~~f~m~a 277 (510)
T KOG1292|consen 209 VLLAIAIVWLY---CFILTITGAYPYKPTTTQ--------SSCRTDRNGVISSAPWIRVPYPFQWGPPTFSAGLVFAMMA 277 (510)
T ss_pred HHHHHHHHHHH---HHHHHhccccCCCccccC--------CcccccHhhhhccCCceeecCCCccCCCcccHHHHHHHHH
Confidence 45566777876 668888888777655442 256665555443 2333
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 029284 149 LTLLSLAGSILYYWAHTRAD 168 (196)
Q Consensus 149 l~l~t~~~~i~yYv~~~~a~ 168 (196)
-++++++-++..|...++--
T Consensus 278 a~~va~iES~G~y~a~ar~~ 297 (510)
T KOG1292|consen 278 ASLVAMIESTGDYIACARLS 297 (510)
T ss_pred HHHHHHHHhcchHHHHHHHh
Confidence 35667777888888887743
No 22
>PRK11383 hypothetical protein; Provisional
Probab=38.49 E-value=98 Score=25.07 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 029284 94 VFFFIVSWVSFLGAEACLLAGSA 116 (196)
Q Consensus 94 i~~~i~SWi~f~iA~~lLl~Ga~ 116 (196)
-.|..+||+.++++..+++.|--
T Consensus 10 ~af~~~sw~al~~g~~~y~iGLw 32 (145)
T PRK11383 10 PAFSIVSWIALVGGIVTYLLGLW 32 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34778999999999999999865
No 23
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=38.17 E-value=1.9e+02 Score=24.81 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcc-cccc---CCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 029284 52 STVYGLSAFGLLLISQAVVNGVTRC-LCFG---KGLVTGTSSTTWAVFFFIVSWVSFLGAEAC 110 (196)
Q Consensus 52 A~~lGi~A~~~Ll~aqii~~~a~~C-~cc~---~~~~~~~~~r~~ai~~~i~SWi~f~iA~~l 110 (196)
|+.+|+...++..+.--.+|..... .+.- ++.+|+.-+-..+....++.|+...++-++
T Consensus 122 A~~~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~lv~~~sm~lWi~v~i~t~~ 184 (226)
T COG4858 122 AQVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWKYLLVAVLSMLLWIAVMIATVF 184 (226)
T ss_pred CcchhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5667777766666655556655433 2221 222333222235777888899887766443
No 24
>PF04103 CD20: CD20-like family; InterPro: IPR007237 This family includes the CD20 protein and the beta subunit of the high affinity receptor for IgE Fc. The high affinity receptor for IgE is a tetrameric structure consisting of a single IgE-binding alpha subunit, a single beta subunit, and two disulphide-linked gamma subunits. The alpha subunit of Fc epsilon RI and most Fc receptors are homologous members of the Ig superfamily. By contrast, the beta and gamma subunits from Fc epsilon RI are not homologous to the Ig superfamily. Both molecules have four putative transmembrane segments and a probably topology where both amino- and carboxy termini protrude into the cytoplasm []. This family also includes LR8 like proteins from humans, mice and rats. The function of the human LR8 protein is unknown although it is known to be strongly expressed in the lung fibroblasts []. This family also includes sarcospan is a transmembrane component of dystrophin-associated glycoprotein. Loss of the sarcoglycan complex and sarcospan alone is sufficient to cause muscular dystrophy. The role of the sarcoglycan complex and sarcospan is thought to be to strengthen the dystrophin axis connecting the basement membrane with the cytoskeleton []. ; GO: 0016021 integral to membrane; PDB: 2OSL_Q 3BKY_P 3PP4_P.
Probab=33.90 E-value=6.4 Score=30.11 Aligned_cols=90 Identities=16% Similarity=0.017 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccceeeeccCCCCcceeecCCChhhHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCC
Q 029284 9 AVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTS 88 (196)
Q Consensus 9 ~vv~~LgliAfiLgi~AE~~r~~~~~v~~~~~~~~~C~Yps~~A~~lGi~A~~~Ll~aqii~~~a~~C~cc~~~~~~~~~ 88 (196)
++=+++|+++.+||+.+...+.. . ..-.+.++-+.++.+++=+++..+ .++|+..
T Consensus 4 ~~qI~lGi~~i~lGi~~~~~~~~--~---------------~~~~~~piW~G~~fiisG~l~i~s--------~k~~~~~ 58 (150)
T PF04103_consen 4 VIQILLGILSIVLGIIALSLSSS--V---------------LVYIGYPIWGGIFFIISGILGIAS--------EKKPTKC 58 (150)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH--H---------------HHHhcccHHHHHHHHhhHHHHHHH--------hcCCccc
Confidence 34568899999999888765553 0 111223333333333333333222 2233311
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 029284 89 STTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTK 123 (196)
Q Consensus 89 ~r~~ai~~~i~SWi~f~iA~~lLl~Ga~~n~~~~~ 123 (196)
.-.....+.++|=+..+.+.++...+...+.++..
T Consensus 59 lv~~~l~lsi~s~~~a~~~i~l~~~~l~~~~~~~~ 93 (150)
T PF04103_consen 59 LVIASLVLSIVSALLALAGIILSSISLAQQHYYYC 93 (150)
T ss_dssp -----------------------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 22345556677766666666666666665554443
No 25
>PRK11383 hypothetical protein; Provisional
Probab=31.87 E-value=1.3e+02 Score=24.43 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccceecCCCccccccccccchhhhHHHHHHHHH
Q 029284 94 VFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLA 155 (196)
Q Consensus 94 i~~~i~SWi~f~iA~~lLl~Ga~~n~~~~~~~~~~~~~~~~C~~~k~GvF~~aa~l~l~t~~ 155 (196)
-.+.-+||...+++..+|+.|-- |+.-. .--+|++..+=+++|+..+
T Consensus 73 ~~f~~~cw~a~l~~i~LL~iGLw-NA~l~--------------lsEKGfY~~af~lsLFgai 119 (145)
T PRK11383 73 SIYYMTCLTVFIISVALLMVGLW-NATLL--------------LSEKGFYGLAFFLSLFGAV 119 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cCCcc--------------hhhhhHHHHHHHHHHHHHH
Confidence 46778999999999999999974 66322 3367888887777777654
No 26
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=29.50 E-value=1.1e+02 Score=28.62 Aligned_cols=47 Identities=13% Similarity=0.017 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCchHHHHHHHHHH
Q 029284 53 TVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVS 100 (196)
Q Consensus 53 ~~lGi~A~~~Ll~aqii~~~a~~C~cc~~~~~~~~~~r~~ai~~~i~S 100 (196)
..++-.-=++|.+.+++..++..++.|..|+-.+ +.|++.++++++.
T Consensus 338 ~~l~k~inllL~l~~vlLv~vSt~~~~~~Pl~~t-R~r~~~t~~~v~l 384 (395)
T PF10267_consen 338 ALLGKLINLLLTLLTVLLVFVSTVANCPLPLTRT-RLRTLTTLLLVGL 384 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHhhc-cHHHHHHHHHHHH
Confidence 3444454556666677777666676777776555 6777776655544
No 27
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=27.02 E-value=2.8e+02 Score=21.02 Aligned_cols=92 Identities=21% Similarity=0.166 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccceeeeccCCCCcceeecCCChhhHHHHHHHHHHHHHHHHHHHHhccccccC---
Q 029284 5 VSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGK--- 81 (196)
Q Consensus 5 ~~v~~vv~~LgliAfiLgi~AE~~r~~~~~v~~~~~~~~~C~Yps~~A~~lGi~A~~~Ll~aqii~~~a~~C~cc~~--- 81 (196)
..+.++..++.++++++++.+..+|+. + +.. ++..+-+.|.++.+++-++-....- .--.+
T Consensus 72 ~~~~~l~~~~~~~a~~~~~~~~~~~~~-~-----------~~~---~~~~~~~~ag~~~l~~l~~~~~~~~-~~~~~~~~ 135 (172)
T PF13903_consen 72 IAFLILGLLLLLFAFVFALIGFCKRSY-T-----------LYL---FAGILFILAGLCILIALIVFVVSVN-YEIEINFP 135 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc-c-----------hhH---HHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhh
Confidence 345666778888899999888777663 1 111 1334555666665555443222211 11100
Q ss_pred CCC---CCC--CchHHHHHHHHHHHHHHHHHHHHHH
Q 029284 82 GLV---TGT--SSTTWAVFFFIVSWVSFLGAEACLL 112 (196)
Q Consensus 82 ~~~---~~~--~~r~~ai~~~i~SWi~f~iA~~lLl 112 (196)
+.. +.. .+--++..+...+.+..++|.++++
T Consensus 136 ~~~~~~~~~~~~~~gwSf~la~~a~~~~l~a~~l~l 171 (172)
T PF13903_consen 136 QWPPDPPSPFSYSYGWSFWLAWVAFILLLLAGILFL 171 (172)
T ss_pred cccccCccCeeEEECHHHHHHHHHHHHHHHHHHHHh
Confidence 111 111 1234777777778777777777765
No 28
>COG4682 Predicted membrane protein [Function unknown]
Probab=24.83 E-value=1.2e+02 Score=24.10 Aligned_cols=31 Identities=26% Similarity=0.374 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 029284 90 TTWAVFFFIVSWVSFLGAEACLLAGSARNAYH 121 (196)
Q Consensus 90 r~~ai~~~i~SWi~f~iA~~lLl~Ga~~n~~~ 121 (196)
+..+..+-+++|..+++++..++.|-- |+-+
T Consensus 6 ~~~s~af~~va~~~lv~G~vvyLiGLW-na~~ 36 (128)
T COG4682 6 EIVSKAFTIVAWLALVVGAVVYLVGLW-NACM 36 (128)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhc-ccch
Confidence 344566778999999999999999964 5433
No 29
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=22.52 E-value=66 Score=24.76 Aligned_cols=8 Identities=25% Similarity=0.110 Sum_probs=3.8
Q ss_pred ccccccCC
Q 029284 181 GMAMQQQQ 188 (196)
Q Consensus 181 ~M~~~~~~ 188 (196)
.|+.|..+
T Consensus 74 ~~g~Yd~~ 81 (130)
T PF12273_consen 74 DPGYYDQQ 81 (130)
T ss_pred CCCCCCCC
Confidence 45545444
No 30
>PF14494 DUF4436: Domain of unknown function (DUF4436)
Probab=21.79 E-value=3.6e+02 Score=23.61 Aligned_cols=83 Identities=24% Similarity=0.253 Sum_probs=46.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhccceeeeccCCCCcceeecCCChhhHHHHHHHHHHHHHHHHHHHHhccccccCCC
Q 029284 4 SVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGL 83 (196)
Q Consensus 4 s~~v~~vv~~LgliAfiLgi~AE~~r~~~~~v~~~~~~~~~C~Yps~~A~~lGi~A~~~Ll~aqii~~~a~~C~cc~~~~ 83 (196)
+++++++...|-++++..++..=.+|. +..+ -.++..|+++..+-++ |..
T Consensus 170 ~~~i~~vm~~L~~~al~~ai~~~~~rr--~~~~----------------~~l~w~aA~LFAlp~l------------RN~ 219 (256)
T PF14494_consen 170 ALFICLVMWALATLALFVAIQVLRRRR--KFEP----------------PMLTWMAAMLFALPPL------------RNI 219 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcc--cccc----------------chHHHHHHHHHhhhhH------------hcc
Confidence 346666667777777776665544443 2222 1377788877777776 332
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029284 84 VTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSA 116 (196)
Q Consensus 84 ~~~~~~r~~ai~~~i~SWi~f~iA~~lLl~Ga~ 116 (196)
-|++..--.-+=++++-|..-+++.+|.+.-..
T Consensus 220 lPGaPP~G~~iD~~~vlW~~i~l~~~m~~~v~~ 252 (256)
T PF14494_consen 220 LPGAPPIGSWIDFAGVLWVLIALVASMVLYVVA 252 (256)
T ss_pred CCCCCCCcceEeeeehHHHHHHHHHHHHHHHHH
Confidence 333211112222445668877777777766544
No 31
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=21.13 E-value=1.1e+02 Score=23.19 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=27.4
Q ss_pred ccccccccc-----chhhhHHHHHHHHHHHHHHHHHHhh
Q 029284 133 LSCATLRKG-----VFAAGAALTLLSLAGSILYYWAHTR 166 (196)
Q Consensus 133 ~~C~~~k~G-----vF~~aa~l~l~t~~~~i~yYv~~~~ 166 (196)
.+||..|.- +.+++.++.+.++++++.-|-.+.-
T Consensus 11 l~CY~~~~d~~~~Wl~~i~~~~v~~~t~~~l~iYp~f~~ 49 (97)
T PF04834_consen 11 LDCYDKKSDMPNYWLYAIGIVLVFCSTFFSLAIYPCFDF 49 (97)
T ss_pred hhhcccCCCCCHHHHHHHHHHHHHHHHHHHHhhhheeec
Confidence 589886554 5899999999999999988876643
Done!