Query 029284
Match_columns 196
No_of_seqs 106 out of 223
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 17:00:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029284.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029284hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b23_C Variegin; hydrolase-hyd 14.7 50 0.0017 19.2 0.7 11 185-195 12-22 (32)
2 3vw7_A Proteinase-activated re 10.3 7.1E+02 0.024 20.5 9.5 47 68-114 111-158 (484)
3 2z73_A Rhodopsin; visual pigme 8.6 8.2E+02 0.028 20.1 8.1 39 68-106 126-165 (448)
4 2wjn_L Reaction center protein 7.8 5E+02 0.017 22.0 4.8 50 141-191 33-85 (274)
5 2nr1_A NR1 M2, M2; receptor, s 7.6 2.2E+02 0.0075 15.8 1.7 14 106-119 10-23 (27)
6 2jp3_A FXYD domain-containing 7.1 2.7E+02 0.0093 18.7 2.3 40 41-82 8-47 (67)
7 4ea3_A Fusion protein of nocic 7.0 9.8E+02 0.034 19.6 8.9 39 69-107 216-255 (434)
8 3tlw_A GLR4197 protein, GLIC; 6.9 9.3E+02 0.032 19.6 6.2 19 6-24 229-247 (321)
9 3pbl_A D(3) dopamine receptor, 6.9 9.8E+02 0.034 19.6 7.7 45 69-113 131-179 (481)
10 2lk9_A Bone marrow stromal ant 6.2 4.2E+02 0.015 15.4 2.5 22 4-25 10-31 (35)
No 1
>3b23_C Variegin; hydrolase-hydrolase inhibitor complex; 2.40A {Amblyomma variegatum}
Probab=14.73 E-value=50 Score=19.15 Aligned_cols=11 Identities=36% Similarity=0.616 Sum_probs=8.9
Q ss_pred ccCCCCCCccc
Q 029284 185 QQQQPGNDFEK 195 (196)
Q Consensus 185 ~~~~~~~~~~~ 195 (196)
++.-+|+|||.
T Consensus 12 ~~~~p~gDFE~ 22 (32)
T 3b23_C 12 HKTAPPFDFEA 22 (32)
T ss_pred cccCCCCChhh
Confidence 66778999985
No 2
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=10.30 E-value=7.1e+02 Score=20.53 Aligned_cols=47 Identities=17% Similarity=0.166 Sum_probs=26.6
Q ss_pred HHHHHHhccccccCCCCCCC-CchHHHHHHHHHHHHHHHHHHHHHHHH
Q 029284 68 AVVNGVTRCLCFGKGLVTGT-SSTTWAVFFFIVSWVSFLGAEACLLAG 114 (196)
Q Consensus 68 ii~~~a~~C~cc~~~~~~~~-~~r~~ai~~~i~SWi~f~iA~~lLl~G 114 (196)
++++..-+|..-.+|.+... .++..+....++.|+..++..+..+.+
T Consensus 111 l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~ 158 (484)
T 3vw7_A 111 MTVISIDRFLAVVYPMQSLSWRTLGRASFTCLAIWALAIAGVVPLLLK 158 (484)
T ss_dssp HHHHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHheEEEcccccccccchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445566666667754332 355567777788999877544444433
No 3
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=8.60 E-value=8.2e+02 Score=20.09 Aligned_cols=39 Identities=15% Similarity=0.265 Sum_probs=24.0
Q ss_pred HHHHHHhccccccCCCCCC-CCchHHHHHHHHHHHHHHHH
Q 029284 68 AVVNGVTRCLCFGKGLVTG-TSSTTWAVFFFIVSWVSFLG 106 (196)
Q Consensus 68 ii~~~a~~C~cc~~~~~~~-~~~r~~ai~~~i~SWi~f~i 106 (196)
+++...-+|..-.++.+.. -.++..+....++.|+..++
T Consensus 126 l~~isidRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~~ 165 (448)
T 2z73_A 126 MAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVL 165 (448)
T ss_dssp HHHHHHHHHHHTTSCTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccccceechhHHHHHHHHHHHHHHH
Confidence 3445556776666765432 13455677778888987654
No 4
>2wjn_L Reaction center protein L chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 2wjm_L* 2x5u_L* 2x5v_L* 4ac5_L* 3t6e_L* 1r2c_L* 1prc_L* 1vrn_L* 2jbl_L* 2prc_L* 3d38_L* 3g7f_L* 3prc_L* 2i5n_L* 3t6d_L* 5prc_L* 6prc_L* 7prc_L* 1dxr_L*
Probab=7.79 E-value=5e+02 Score=21.99 Aligned_cols=50 Identities=14% Similarity=0.048 Sum_probs=25.7
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhccCCCC---CCCCCCccccccccCCCCC
Q 029284 141 GVFAAGAALTLLSLAGSILYYWAHTRADTGGW---EKHRNEGLGMAMQQQQPGN 191 (196)
Q Consensus 141 GvF~~aa~l~l~t~~~~i~yYv~~~~a~~~~~---~~~~~~~i~M~~~~~~~~~ 191 (196)
|.|+..++++.+...+-+.+-+.+.-.-+..| ++++ ..+|.+-||+++|-
T Consensus 33 G~fGv~s~~~~~~a~~ii~~~~~a~~~wN~~~~ai~Pp~-~~yGL~~~Pl~~GG 85 (274)
T 2wjn_L 33 GFFGVSAIFFIFLGVSLIGYAASQGPTWDPFAISINPPD-LKYGLGAAPLLEGG 85 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSCCCTTTCCBCCCC-GGGTTSCCCTTTTH
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHhcCCCCceeEeecCCC-HHHccCCCchhcCC
Confidence 66666665555554444444433332222222 3323 45677778888774
No 5
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=7.62 E-value=2.2e+02 Score=15.81 Aligned_cols=14 Identities=14% Similarity=0.078 Sum_probs=10.6
Q ss_pred HHHHHHHHHhhhcc
Q 029284 106 GAEACLLAGSARNA 119 (196)
Q Consensus 106 iA~~lLl~Ga~~n~ 119 (196)
++...|.||...|+
T Consensus 10 ~aa~wF~WGvllns 23 (27)
T 2nr1_A 10 SSAMWFSWGVLLNS 23 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhHHHhhHhheec
Confidence 46778888888776
No 6
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=7.13 E-value=2.7e+02 Score=18.69 Aligned_cols=40 Identities=10% Similarity=0.059 Sum_probs=19.5
Q ss_pred CcceeecCCChhhHHHHHHHHHHHHHHHHHHHHhccccccCC
Q 029284 41 EMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKG 82 (196)
Q Consensus 41 ~~~~C~Yps~~A~~lGi~A~~~Ll~aqii~~~a~~C~cc~~~ 82 (196)
+..+.-|.+=.--+|-+++.+| +.-+++....+|-|+.+.
T Consensus 8 dpF~YDY~tLRigGLifA~vLf--i~GI~iilS~kcrCk~~q 47 (67)
T 2jp3_A 8 SPFYYDWESLQLGGLIFGGLLC--IAGIALALSGKCKCRRNH 47 (67)
T ss_dssp SGGGGGGHHHHHHHHHHHHHHH--HHHHHHHHTTHHHHHHTC
T ss_pred CCcccchHHheecchhhHHHHH--HHHHHHHHcCcccccCCC
Confidence 3344445443334444444333 334455556678777543
No 7
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=7.00 E-value=9.8e+02 Score=19.63 Aligned_cols=39 Identities=10% Similarity=0.050 Sum_probs=19.6
Q ss_pred HHHHHhccccccCCCCCCC-CchHHHHHHHHHHHHHHHHH
Q 029284 69 VVNGVTRCLCFGKGLVTGT-SSTTWAVFFFIVSWVSFLGA 107 (196)
Q Consensus 69 i~~~a~~C~cc~~~~~~~~-~~r~~ai~~~i~SWi~f~iA 107 (196)
+++..-+|..-++|.+... .++..+....+++|+..++-
T Consensus 216 ~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~ 255 (434)
T 4ea3_A 216 TAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVV 255 (434)
T ss_dssp HHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhEEEcccccccccchhhhHHhhhhhhhHHHHH
Confidence 3344556655566654321 34445566677888776543
No 8
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=6.95 E-value=9.3e+02 Score=19.56 Aligned_cols=19 Identities=32% Similarity=0.312 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 029284 6 SIVAVVTALHLIAFVFAVG 24 (196)
Q Consensus 6 ~v~~vv~~LgliAfiLgi~ 24 (196)
+...++.+|.++.|.+.+.
T Consensus 229 v~l~it~lL~~t~~~~~~~ 247 (321)
T 3tlw_A 229 VTLVVSTLIAHIAFNILVE 247 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred EEEEhhHHHHHHHHHHHHH
Confidence 3345666677777766653
No 9
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=6.94 E-value=9.8e+02 Score=19.57 Aligned_cols=45 Identities=18% Similarity=0.202 Sum_probs=26.0
Q ss_pred HHHHHhccccccCCCCC----CCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 029284 69 VVNGVTRCLCFGKGLVT----GTSSTTWAVFFFIVSWVSFLGAEACLLA 113 (196)
Q Consensus 69 i~~~a~~C~cc~~~~~~----~~~~r~~ai~~~i~SWi~f~iA~~lLl~ 113 (196)
+++..-+|..-.+|... .-.++..+....++.|+..++..+..+.
T Consensus 131 ~~is~dRy~aI~~P~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~ 179 (481)
T 3pbl_A 131 CAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLF 179 (481)
T ss_dssp HHHHHHHHHHHHSHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445566555566432 2234456677778889887755555444
No 10
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=6.17 E-value=4.2e+02 Score=15.45 Aligned_cols=22 Identities=9% Similarity=0.371 Sum_probs=11.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 029284 4 SVSIVAVVTALHLIAFVFAVGA 25 (196)
Q Consensus 4 s~~v~~vv~~LgliAfiLgi~A 25 (196)
++++.+++..||+.=-++.+-|
T Consensus 10 Gvl~LLviV~LgV~LI~f~~kA 31 (35)
T 2lk9_A 10 GILVLLIIVILGVPLIIFTIKK 31 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHC---
T ss_pred cHHHHHHHHHhcchheEEeeec
Confidence 4555566666776665555444
Done!