Query 029284
Match_columns 196
No_of_seqs 106 out of 223
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 17:01:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029284.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029284hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2p7tc1 f.14.1.1 (C:86-119) Po 28.8 34 0.0025 18.4 3.4 21 7-27 6-26 (34)
2 d2pila_ d.24.1.1 (A:) Pilin Gc 9.8 83 0.0061 20.3 2.6 17 7-23 6-22 (158)
3 d2q7ra1 f.56.1.1 (A:1-139) Ara 9.2 37 0.0027 23.9 0.4 47 5-51 9-58 (139)
4 d2axtm1 f.23.35.1 (M:1-36) Pho 6.9 2.1E+02 0.015 15.5 4.0 22 143-164 8-29 (36)
5 d2i5nl1 f.26.1.1 (L:1-273) L ( 6.3 2.3E+02 0.017 22.0 4.0 58 132-190 20-83 (273)
6 d1m0ga_ g.46.1.1 (A:) Metallot 4.7 1.6E+02 0.012 15.0 1.3 11 73-83 14-24 (30)
7 d1x63a1 g.39.1.3 (A:8-44) Four 4.6 1.1E+02 0.0077 16.8 0.6 15 73-87 8-22 (37)
8 d2j8cl1 f.26.1.1 (L:1-281) L ( 4.6 4.2E+02 0.03 20.5 4.5 58 132-190 20-83 (281)
9 d1ppjd2 f.23.11.1 (D:196-241) 4.3 2.9E+02 0.021 15.5 2.5 16 147-162 12-27 (46)
10 d2uuia1 f.56.1.1 (A:2-147) Leu 3.9 3.8E+02 0.028 18.2 3.5 33 19-51 21-53 (146)
No 1
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=28.85 E-value=34 Score=18.36 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 029284 7 IVAVVTALHLIAFVFAVGAER 27 (196)
Q Consensus 7 v~~vv~~LgliAfiLgi~AE~ 27 (196)
+.+++.+-|+.||.|-++|-.
T Consensus 6 vavvvmvagits~glv~aa~a 26 (34)
T d2p7tc1 6 VAVVVMVAGITSFGLVTAALA 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeccchhhhHHHHHH
Confidence 567788889999999888754
No 2
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=9.83 E-value=83 Score=20.29 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029284 7 IVAVVTALHLIAFVFAV 23 (196)
Q Consensus 7 v~~vv~~LgliAfiLgi 23 (196)
+.+++.++|++|.+.--
T Consensus 6 LlVViaIIgILaaia~P 22 (158)
T d2pila_ 6 LMIVIAIVGILAAVALP 22 (158)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45667777777776543
No 3
>d2q7ra1 f.56.1.1 (A:1-139) Arachidonate 5-lipoxygenase-activating protein, FLAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.18 E-value=37 Score=23.87 Aligned_cols=47 Identities=21% Similarity=0.313 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHH---HHHHHHHhhhccceeeeccCCCCcceeecCCCh
Q 029284 5 VSIVAVVTALHLIA---FVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDA 51 (196)
Q Consensus 5 ~~v~~vv~~LgliA---fiLgi~AE~~r~~~~~v~~~~~~~~~C~Yps~~ 51 (196)
++...++.++.++- +.+-++.+++|.|.+.-....++..+|.++...
T Consensus 9 ~vl~~~vt~l~~~~~~~ls~~Vg~aR~k~~v~~p~~~g~~~f~ra~RaH~ 58 (139)
T d2q7ra1 9 VVLLAIVTLISVVQNGFFAHKVEHESRTQNGRSFQRTGTLAFERVYTANQ 58 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCSCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHh
Confidence 34444444444443 444566777777654322122455677766544
No 4
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.92 E-value=2.1e+02 Score=15.47 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=18.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 029284 143 FAAGAALTLLSLAGSILYYWAH 164 (196)
Q Consensus 143 F~~aa~l~l~t~~~~i~yYv~~ 164 (196)
|.+.+.|.++-+.|-++.|+=.
T Consensus 8 ~iAt~LFilvPt~FLliLyvqT 29 (36)
T d2axtm1 8 LIATALFVLVPSVFLIILYVQT 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhheee
Confidence 6778889999999999999743
No 5
>d2i5nl1 f.26.1.1 (L:1-273) L (light) subunit {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=6.30 E-value=2.3e+02 Score=21.99 Aligned_cols=58 Identities=16% Similarity=0.023 Sum_probs=27.0
Q ss_pred ccccccccc---cchhhhHHHHHHHHHHHHHHHHHHhhccCCCC---CCCCCCccccccccCCCC
Q 029284 132 DLSCATLRK---GVFAAGAALTLLSLAGSILYYWAHTRADTGGW---EKHRNEGLGMAMQQQQPG 190 (196)
Q Consensus 132 ~~~C~~~k~---GvF~~aa~l~l~t~~~~i~yYv~~~~a~~~~~---~~~~~~~i~M~~~~~~~~ 190 (196)
+..|..+.+ |.|+..++++.+....-+.+=+...-..+..| +|++ ...|++-+|+++|
T Consensus 20 ~lfd~wvGPiYlG~fGv~s~~f~~~~~~ii~~~~~~~~~wn~~~lsl~PP~-~~yGL~~~PL~eG 83 (273)
T d2i5nl1 20 DLFDFWVGPYFVGFFGVSAIFFIFLGVSLIGYAASQGPTWDPFAISINPPD-LKYGLGAAPLLEG 83 (273)
T ss_dssp GGSCCEETTEECHHHHHHHHHHHHHHHHHHHHHHHTSSCCCTTTCCBCCCC-GGGTTSCCCGGGT
T ss_pred cccccccCCeeeehHHHHHHHHHHHHHHHHHHHHhccCccCceEEEccCCc-hhhCcCCCCcccC
Confidence 344655543 66666665555544433333332222222222 2222 3456665676665
No 6
>d1m0ga_ g.46.1.1 (A:) Metallothionein {Black rockcod (Notothenia coriiceps) [TaxId: 8208]}
Probab=4.70 E-value=1.6e+02 Score=15.01 Aligned_cols=11 Identities=36% Similarity=0.887 Sum_probs=6.4
Q ss_pred HhccccccCCC
Q 029284 73 VTRCLCFGKGL 83 (196)
Q Consensus 73 a~~C~cc~~~~ 83 (196)
+.||.|.++.-
T Consensus 14 asgcvckgktc 24 (30)
T d1m0ga_ 14 ASGCVCKGKTC 24 (30)
T ss_dssp HTSCGGGTSSS
T ss_pred ccCceecCCcc
Confidence 45666666553
No 7
>d1x63a1 g.39.1.3 (A:8-44) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.61 E-value=1.1e+02 Score=16.81 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=11.3
Q ss_pred HhccccccCCCCCCC
Q 029284 73 VTRCLCFGKGLVTGT 87 (196)
Q Consensus 73 a~~C~cc~~~~~~~~ 87 (196)
++.|-.|.+++.|+.
T Consensus 8 a~~C~~C~k~I~~G~ 22 (37)
T d1x63a1 8 SPKCKGCFKAIVAGD 22 (37)
T ss_dssp SCBCSSSCCBCCSSS
T ss_pred CcccccCCCccCCCC
Confidence 467888888887763
No 8
>d2j8cl1 f.26.1.1 (L:1-281) L (light) subunit {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.59 E-value=4.2e+02 Score=20.49 Aligned_cols=58 Identities=10% Similarity=-0.089 Sum_probs=26.5
Q ss_pred ccccccccc---cchhhhHHHHHHHHHHHHHHHHHHhhccCCCC---CCCCCCccccccccCCCC
Q 029284 132 DLSCATLRK---GVFAAGAALTLLSLAGSILYYWAHTRADTGGW---EKHRNEGLGMAMQQQQPG 190 (196)
Q Consensus 132 ~~~C~~~k~---GvF~~aa~l~l~t~~~~i~yYv~~~~a~~~~~---~~~~~~~i~M~~~~~~~~ 190 (196)
+..|..+.+ |.|+..++++.+...+-+.+=+.+.-..+..+ +|++ ...|++-+|+++|
T Consensus 20 ~lfd~wvGPiYlG~~Gv~s~~~~~~~~~ii~~~~~~~~~wn~~~lsl~PP~-~~yGL~~~PL~eG 83 (281)
T d2j8cl1 20 NLFDFWVGPFYVGFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVYPPA-LEYGLGGAPLAKG 83 (281)
T ss_dssp TTTCCEETTEECHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTTCEECCCC-GGGTTSCCCGGGT
T ss_pred cccccccCCEEeehHHHHHHHHHHHHHHHHHHHHHhcCCcChhheeecCCC-hhhCCCCCCcccC
Confidence 445655554 55555555544444443333333322222222 2322 3456665676665
No 9
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.30 E-value=2.9e+02 Score=15.47 Aligned_cols=16 Identities=19% Similarity=0.326 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 029284 147 AALTLLSLAGSILYYW 162 (196)
Q Consensus 147 a~l~l~t~~~~i~yYv 162 (196)
-++.+++.+..+.||.
T Consensus 12 Kv~~~l~~l~~l~yy~ 27 (46)
T d1ppjd2 12 KMLLMMGLLLPLVYAM 27 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455556666666664
No 10
>d2uuia1 f.56.1.1 (A:2-147) Leukotriene C4 synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.93 E-value=3.8e+02 Score=18.17 Aligned_cols=33 Identities=18% Similarity=0.065 Sum_probs=19.5
Q ss_pred HHHHHHHhhhccceeeeccCCCCcceeecCCCh
Q 029284 19 FVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDA 51 (196)
Q Consensus 19 fiLgi~AE~~r~~~~~v~~~~~~~~~C~Yps~~ 51 (196)
+.+-++.+.+|.|.+.-.+..++..+|..+...
T Consensus 21 ~s~~V~~~R~k~kv~~p~~~g~~~fera~RaH~ 53 (146)
T d2uuia1 21 FSLQVISARRAFRVSPPLTTGPPEFERVYRAQV 53 (146)
T ss_dssp HHHHHHHHHHHTTCCSSCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHh
Confidence 444577778777764322333456677776554
Done!