BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029285
(196 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RMU|A Chain A, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|B Chain B, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|C Chain C, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|D Chain D, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
Length = 134
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 14/121 (11%)
Query: 76 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRG---AWLWVG---AEMIHLMEL 129
++HV I +LE++ FY+NILG +++EA P LP G ++ +G E++H + L
Sbjct: 6 LNHVAIAVPDLEKAAAFYKNILGAQVSEAVP---LPEHGVSVVFVNLGNTKMELLHPLGL 62
Query: 130 PNPDPLSGRPEHGGRDRHTCIAIRDVSKLKMILDKAGI-----SYTLSKSGRPAIFTRDP 184
+P + G H CI + +++ M L K I + G+P IF
Sbjct: 63 DSPIAGFLQKNKAGGMHHICIEVDNINAAVMDLKKKKIRSLSEEVKIGAHGKPVIFLHPK 122
Query: 185 D 185
D
Sbjct: 123 D 123
>pdb|3HUH|A Chain A, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|B Chain B, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|C Chain C, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|D Chain D, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
Length = 152
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 32/140 (22%)
Query: 67 DKIDYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHL 126
D+ID+ V++V ++ ++ FY+ +LG + + K L GA+ I+L
Sbjct: 22 DRIDHLVLTV-------SDISTTIRFYEEVLGFSAVTFKQNRK------ALIFGAQKINL 68
Query: 127 ----MELPNPDPLSGRPEHGGRDR--HTCIAIRDVSKLKMILDKAGISYT---LSKSGRP 177
ME +P + RP G D T I DV + IL +AGIS + ++G
Sbjct: 69 HQQEMEF---EPKASRPTPGSADLCFITSTPINDV--VSEIL-QAGISIVEGPVERTGAT 122
Query: 178 ----AIFTRDPDANALEFTQ 193
+I+ RDPD N +E +Q
Sbjct: 123 GEIMSIYIRDPDGNLIEISQ 142
>pdb|3HNQ|A Chain A, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|B Chain B, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|C Chain C, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|D Chain D, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
Length = 144
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 26/137 (18%)
Query: 67 DKIDYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHL 126
D+ID+ V++V ++ ++ FY+ +LG + + K L GA+ I+L
Sbjct: 22 DRIDHLVLTV-------SDISTTIRFYEEVLGFSAVTFKQNRK------ALIFGAQKINL 68
Query: 127 MELPNP-DPLSGRPEHGGRDR--HTCIAIRDVSKLKMILDKAGISYT---LSKSGRP--- 177
+ +P + RP G D T I DV + IL +AGIS + ++G
Sbjct: 69 HQQEXEFEPKASRPTPGSADLCFITSTPINDV--VSEIL-QAGISIVEGPVERTGATGEI 125
Query: 178 -AIFTRDPDANALEFTQ 193
+I+ RDPD N +E +Q
Sbjct: 126 XSIYIRDPDGNLIEISQ 142
>pdb|3L7T|A Chain A, Crystal Structure Of Smu.1112c
pdb|3L7T|B Chain B, Crystal Structure Of Smu.1112c
pdb|3L7T|C Chain C, Crystal Structure Of Smu.1112c
pdb|3L7T|D Chain D, Crystal Structure Of Smu.1112c
Length = 134
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 13/131 (9%)
Query: 75 SVHHVGILCENLERSLEFYQNILGLEI--NEARP--HD-KLPYRGAWLWV---GAEMIHL 126
+VHHV ++ + ++S EFY N LG E+ RP HD KL + + + G ++
Sbjct: 5 AVHHVALIVSDYDKSYEFYVNQLGFEVIRENHRPKRHDYKLDLKCGDIELEIFGNKLTDS 64
Query: 127 MELPNPDPLSGRPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSK----SGRPAIFTR 182
P+ +S E G RH + DV + L GI + +G+ F
Sbjct: 65 NYCAPPERISWPREACGL-RHLAFYVEDVEASRQELIALGIRVEEVRYDDYTGKKMAFFF 123
Query: 183 DPDANALEFTQ 193
DPD LE +
Sbjct: 124 DPDGLPLELHE 134
>pdb|4HC5|A Chain A, Crystal Structure Of Member Of GlyoxalaseBLEOMYCIN
RESISTANCE ProteinDIOXYGENASE SUPERFAMILY FROM
SPHAEROBACTER THERMOPHILUS DSM 20745
pdb|4HC5|B Chain B, Crystal Structure Of Member Of GlyoxalaseBLEOMYCIN
RESISTANCE ProteinDIOXYGENASE SUPERFAMILY FROM
SPHAEROBACTER THERMOPHILUS DSM 20745
pdb|4HC5|C Chain C, Crystal Structure Of Member Of GlyoxalaseBLEOMYCIN
RESISTANCE ProteinDIOXYGENASE SUPERFAMILY FROM
SPHAEROBACTER THERMOPHILUS DSM 20745
pdb|4HC5|D Chain D, Crystal Structure Of Member Of GlyoxalaseBLEOMYCIN
RESISTANCE ProteinDIOXYGENASE SUPERFAMILY FROM
SPHAEROBACTER THERMOPHILUS DSM 20745
Length = 133
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 17/126 (13%)
Query: 73 VVSVHHVGILCENLERSLEFYQNILGLEI---NEARPHDKLPYRGAWLWVGAEMIHLMEL 129
+ VH I+ + E++L+FY N LG E N+ P+ + + GA+ + L
Sbjct: 11 IAYVHSATIIVSDQEKALDFYVNTLGFEKVFDNQLDPNXRFV---TVVPPGAQTQVALGL 67
Query: 130 PNPDPLSGRPEHGGRDRHTCIAI--RDVSKLKMILDKAGISYTLSKSGRP----AIFTRD 183
P+ +P GG +T I++ RD+ + L + G+++T P A + D
Sbjct: 68 PSWYEDGRKP--GG---YTGISLITRDIDEAYKTLTERGVTFTKPPEXXPWGQRATWFSD 122
Query: 184 PDANAL 189
PD N
Sbjct: 123 PDGNQF 128
>pdb|2QH0|A Chain A, Crystal Structure Of A Glyoxalase From Clostridium
Acetobutylicum
Length = 138
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 74 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPD 133
+ VHH+G +N++ +L+ ++ + +E +E D++ R ++ + +EL PD
Sbjct: 3 LKVHHIGYAVKNIDSALKKFKRLGYVEESEV-VRDEV--RKVYIQFVINGGYRVELVAPD 59
Query: 134 ----PLSGRPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSKSGR--PAI------FT 181
P++ + G H C + D+ K I + + I YTL K PAI F
Sbjct: 60 GEDSPINKTIKKGSTPYHICYEVEDIQ--KSIEEMSQIGYTLFKKAEIAPAIDNRKVAFL 117
Query: 182 RDPDANALEFTQVDG 196
D +E + +G
Sbjct: 118 FSTDIGLIELLEKEG 132
>pdb|3GHJ|A Chain A, Crystal Structure From The Mobile Metagenome Of Halifax
Harbour Sewage Outfall: Integron Cassette Protein
Hfx_cass4
Length = 141
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 28/128 (21%)
Query: 76 VHHVGILCENLERSLEFYQNILGLE---INEARPHDKLPYRGAWLWVG--AEMIHLMELP 130
+ V + +NLE+S +FY ILG E ++ AR R +LWV A + L E
Sbjct: 29 LFEVAVKVKNLEKSSQFYTEILGFEAGLLDSAR-------RWNFLWVSGRAGXVVLQE-- 79
Query: 131 NPDPLSGRPEHGGRDRHTCIAIR--DVSKLKMILDKAGISY--TLSKSGRPAI--FTRDP 184
+ + +H + ++ LK L+ G+S +++ A+ + DP
Sbjct: 80 --------EKENWQQQHFSFRVEKSEIEPLKKALESKGVSVHGPVNQEWXQAVSLYFADP 131
Query: 185 DANALEFT 192
+ +ALEFT
Sbjct: 132 NGHALEFT 139
>pdb|3HDP|A Chain A, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase-I From
Clostridium Acetobutylicum
Length = 133
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 11/115 (9%)
Query: 74 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPD 133
+ VHH+G +N++ +L+ ++ + +E +E D++ R ++ + +EL PD
Sbjct: 6 LKVHHIGYAVKNIDSALKKFKRLGYVEESEV-VRDEV--RKVYIQFVINGGYRVELVAPD 62
Query: 134 ----PLSGRPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSKSGR--PAIFTR 182
P++ + G H C + D+ K I + + I YTL K PAI R
Sbjct: 63 GEDSPINKTIKKGSTPYHICYEVEDIQ--KSIEEMSQIGYTLFKKAEIAPAIDNR 115
>pdb|2C21|A Chain A, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|B Chain B, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|C Chain C, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|D Chain D, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|E Chain E, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|F Chain F, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
Length = 144
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 6/117 (5%)
Query: 78 HVGILCENLERSLEFYQNILGLEINEA--RPHDKLPYRGAWLWVGAEMIH-LMELPNPDP 134
H I +L+RS++FY LG+++ P DK Y +L G EM ++EL
Sbjct: 11 HTMIRVGDLDRSIKFYTERLGMKVLRKWDVPEDK--YTLVFLGYGPEMSSTVLELTYNYG 68
Query: 135 LSGRPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEF 191
++ +H H I + DV +L + K + F DPD +E
Sbjct: 69 VTSY-KHDEAYGHIAIGVEDVKELVADMRKHDVPIDYEDESGFMAFVVDPDGYYIEL 124
>pdb|3R4Q|A Chain A, Crystal Structure Of Lactoylglutathione Lyase From
Agrobacterium Tumefaciens
pdb|3R4Q|B Chain B, Crystal Structure Of Lactoylglutathione Lyase From
Agrobacterium Tumefaciens
pdb|3R4Q|C Chain C, Crystal Structure Of Lactoylglutathione Lyase From
Agrobacterium Tumefaciens
pdb|3R4Q|D Chain D, Crystal Structure Of Lactoylglutathione Lyase From
Agrobacterium Tumefaciens
pdb|3R4Q|E Chain E, Crystal Structure Of Lactoylglutathione Lyase From
Agrobacterium Tumefaciens
Length = 160
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 15/126 (11%)
Query: 75 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLM---ELPN 131
++ + ++L+ + FY+++ GLE+ KLP + + G +M+ L E
Sbjct: 8 AIMETALYADDLDAAEAFYRDVFGLEMVL-----KLPGQLVFFKCGRQMLLLFDPQESSR 62
Query: 132 PDPLSGRPEHGGRDR-HTCIAIRD---VSKLKMILDKAGIS---YTLSKSGRPAIFTRDP 184
D + P HG + H C D V + K + I Y +G +++ RDP
Sbjct: 63 ADANNPIPRHGAVGQGHFCFYADDKAEVDEWKTRFEALEIPVEHYHRWPNGSYSVYIRDP 122
Query: 185 DANALE 190
N++E
Sbjct: 123 AGNSVE 128
>pdb|2P25|A Chain A, The Crystal Structure Of The Glyoxalase Family Protein
From Enterococcus Faecalis
Length = 126
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 19/127 (14%)
Query: 75 SVHHVGILCENLERSLEFYQNILGLEI--NEARPHD---KLPYRGAWLWVGAEMIHLMEL 129
+HHV I N + + FY LG E+ RP KL L +G++ +E+
Sbjct: 5 EIHHVAINASNYQATKNFYVEKLGFEVLRENHRPEKNDIKLD-----LKLGSQE---LEI 56
Query: 130 PNPDPLSGRPEHGGR--DRHTCIAIRDVSKLKMILDKAGISYTLSK----SGRPAIFTRD 183
D RP + RH + + ++ L++ GI + +G+ F D
Sbjct: 57 FISDQFPARPSYPEALGLRHLAFKVEHIEEVIAFLNEQGIETEPLRVDDFTGKKXTFFFD 116
Query: 184 PDANALE 190
PD LE
Sbjct: 117 PDGLPLE 123
>pdb|3ZW5|A Chain A, Crystal Structure Of The Human Glyoxalase
Domain-Containing Protein 5
pdb|3ZW5|B Chain B, Crystal Structure Of The Human Glyoxalase
Domain-Containing Protein 5
Length = 147
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 19/125 (15%)
Query: 78 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNP-DPLS 136
H+ + ++++ + FY ILG+E+ + K L G + +L E+ +P +
Sbjct: 30 HIVMTVKSIKDTTMFYSKILGMEVMTFKEDRK------ALCFGDQKFNLHEVGKEFEPKA 83
Query: 137 GRPEHGGRDRHTCIAIRDVSKLKMI---------LDKAGISYTLSKSGRPAIFTRDPDAN 187
P G D C+ I +V +MI +++ + T +K +I+ RDPD N
Sbjct: 84 AHPVPGSLD--ICL-ITEVPLEEMIQHLKACDVPIEEGPVPRTGAKGPIMSIYFRDPDRN 140
Query: 188 ALEFT 192
+E +
Sbjct: 141 LIEVS 145
>pdb|4IR0|A Chain A, Crystal Structure Of Metallothiol Transferase Fosb 2 From
Bacillus Anthracis Str. Ames
pdb|4IR0|B Chain B, Crystal Structure Of Metallothiol Transferase Fosb 2 From
Bacillus Anthracis Str. Ames
Length = 148
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 76 VHHVGILCENLERSLEFYQNILGLE-INEARPHDKLPYRGAWLWVGAE 122
++H+ NLE+S+EFYQ IL + + + R G W+ + E
Sbjct: 6 INHICFSVSNLEKSIEFYQKILQAKLLVKGRKLAYFDLNGLWIALNVE 53
>pdb|1CM5|A Chain A, Crystal Structure Of C418a,C419a Mutant Of Pfl From E.Coli
pdb|1CM5|B Chain B, Crystal Structure Of C418a,C419a Mutant Of Pfl From E.Coli
Length = 759
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 130 PNPDPLSGRPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLS 172
P +P+ GR + G ++ V+KL K GISYT S
Sbjct: 631 PGANPMHGRDQKGA-----VASLTSVAKLPFAYAKDGISYTFS 668
>pdb|2PFL|A Chain A, Crystal Structure Of Pfl From E.Coli
pdb|2PFL|B Chain B, Crystal Structure Of Pfl From E.Coli
pdb|3PFL|A Chain A, Crystal Structure Of Pfl From E.coli In Complex With
Substrate Analogue Oxamate
pdb|3PFL|B Chain B, Crystal Structure Of Pfl From E.coli In Complex With
Substrate Analogue Oxamate
pdb|1H16|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
And Coa
pdb|1H17|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Coa And
The Substrate Analog Oxamate
pdb|1H18|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
pdb|1H18|B Chain B, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
pdb|1MZO|A Chain A, Crystal Structure Of Pyruvate Formate-Lyase With Pyruvate
pdb|1MZO|B Chain B, Crystal Structure Of Pyruvate Formate-Lyase With Pyruvate
Length = 759
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 130 PNPDPLSGRPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLS 172
P +P+ GR + G ++ V+KL K GISYT S
Sbjct: 631 PGANPMHGRDQKGA-----VASLTSVAKLPFAYAKDGISYTFS 668
>pdb|1ZSW|A Chain A, Crystal Structure Of Bacillus Cereus Metallo Protein
From Glyoxalase Family
Length = 338
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 71 YGVVSVHHVGILCENLERSLEFYQNILGL 99
Y + HH+ ++ +N + FY+N+LGL
Sbjct: 26 YEIKGHHHISMVTKNANENNHFYKNVLGL 54
>pdb|1F9Z|A Chain A, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1F9Z|B Chain B, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1FA5|A Chain A, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA5|B Chain B, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|A Chain A, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|B Chain B, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|A Chain A, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|B Chain B, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA8|A Chain A, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
pdb|1FA8|B Chain B, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
Length = 135
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 5/121 (4%)
Query: 78 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSG 137
H + +L+RS++FY +LG+++ + + Y A++ G E + +
Sbjct: 5 HTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVD 64
Query: 138 RPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLS----KSGRPAI-FTRDPDANALEFT 192
+ E G H +++ + ++ + + G + T K G I F DPD +E
Sbjct: 65 KYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELI 124
Query: 193 Q 193
+
Sbjct: 125 E 125
>pdb|3HPV|A Chain A, Crystal Structure Analysis Of The 2,3-dioxygenase Lapb
From Pseudomonas Sp. Kl28
pdb|3HPV|B Chain B, Crystal Structure Analysis Of The 2,3-dioxygenase Lapb
From Pseudomonas Sp. Kl28
pdb|3HPV|C Chain C, Crystal Structure Analysis Of The 2,3-dioxygenase Lapb
From Pseudomonas Sp. Kl28
pdb|3HPV|D Chain D, Crystal Structure Analysis Of The 2,3-dioxygenase Lapb
From Pseudomonas Sp. Kl28
pdb|3HPY|A Chain A, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In The Complex With 4-Methylcatechol
pdb|3HPY|B Chain B, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In The Complex With 4-Methylcatechol
pdb|3HPY|C Chain C, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In The Complex With 4-Methylcatechol
pdb|3HPY|D Chain D, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In The Complex With 4-Methylcatechol
pdb|3HQ0|A Chain A, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In Complex With A Product
pdb|3HQ0|B Chain B, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In Complex With A Product
pdb|3HQ0|C Chain C, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In Complex With A Product
pdb|3HQ0|D Chain D, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In Complex With A Product
Length = 309
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 72 GVVSVHHVGILCENLERSLEFYQNILGL 99
GV+ H + NLE + FY+N+LGL
Sbjct: 5 GVLRPGHAQVRVLNLEEGIHFYRNVLGL 32
>pdb|1F1R|A Chain A, Crystal Structure Of Homoprotocatechuate 2,3-Dioxygenase
From Arthrobacter Globiformis (Native, Non-Cryo)
pdb|1F1R|B Chain B, Crystal Structure Of Homoprotocatechuate 2,3-Dioxygenase
From Arthrobacter Globiformis (Native, Non-Cryo)
pdb|1F1U|A Chain A, Crystal Structure Of Homoprotocatechuate 2,3-dioxygenase
From Arthrobacter Globiformis (native, Low Temperature)
pdb|1F1U|B Chain B, Crystal Structure Of Homoprotocatechuate 2,3-dioxygenase
From Arthrobacter Globiformis (native, Low Temperature)
pdb|1F1V|A Chain A, Anaerobic Substrate Complex Of Homoprotocatechuate
2,3-Dioxygenase From Arthrobacter Globiformis. (Complex
With 3,4- Dihydroxyphenylacetate)
pdb|1F1V|B Chain B, Anaerobic Substrate Complex Of Homoprotocatechuate
2,3-Dioxygenase From Arthrobacter Globiformis. (Complex
With 3,4- Dihydroxyphenylacetate)
Length = 323
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 73 VVSVHHVGILCENLERSLEFYQNILGLEINE 103
+V ++ I+ +L +S EFY ++LGL + E
Sbjct: 15 IVRCAYMEIVVTDLAKSREFYVDVLGLHVTE 45
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,718,342
Number of Sequences: 62578
Number of extensions: 229909
Number of successful extensions: 539
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 521
Number of HSP's gapped (non-prelim): 20
length of query: 196
length of database: 14,973,337
effective HSP length: 94
effective length of query: 102
effective length of database: 9,091,005
effective search space: 927282510
effective search space used: 927282510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)