Query 029285
Match_columns 196
No_of_seqs 143 out of 1612
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 10:27:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029285.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029285hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02367 lactoylglutathione ly 99.9 4.5E-20 9.7E-25 147.3 18.5 122 74-195 74-223 (233)
2 cd08353 Glo_EDI_BRP_like_7 Thi 99.9 3.8E-20 8.1E-25 137.5 15.9 121 73-194 1-141 (142)
3 PRK11478 putative lyase; Provi 99.9 4.9E-20 1.1E-24 134.4 16.2 122 71-193 2-128 (129)
4 PLN03042 Lactoylglutathione ly 99.8 2.2E-19 4.7E-24 139.9 17.8 123 73-195 25-175 (185)
5 cd07241 Glo_EDI_BRP_like_3 Thi 99.8 1.7E-19 3.7E-24 130.2 14.3 117 75-192 1-125 (125)
6 TIGR03645 glyox_marine lactoyl 99.8 2.5E-19 5.4E-24 136.9 15.6 122 74-195 3-152 (162)
7 cd08352 Glo_EDI_BRP_like_1 Thi 99.8 3.4E-19 7.3E-24 128.3 15.5 119 74-193 2-125 (125)
8 cd08342 HPPD_N_like N-terminal 99.8 3.1E-19 6.8E-24 132.2 14.2 118 76-195 1-124 (136)
9 cd07243 2_3_CTD_C C-terminal d 99.8 1.1E-18 2.4E-23 130.7 15.3 114 71-193 2-124 (143)
10 cd07233 Glyoxalase_I Glyoxalas 99.8 1.6E-18 3.5E-23 124.7 15.2 114 76-192 1-121 (121)
11 cd07253 Glo_EDI_BRP_like_2 Thi 99.8 1.8E-18 3.9E-23 124.5 15.1 117 73-194 1-125 (125)
12 TIGR03081 metmalonyl_epim meth 99.8 4.6E-19 9.9E-24 128.7 12.0 119 75-193 1-128 (128)
13 cd07245 Glo_EDI_BRP_like_9 Thi 99.8 9.3E-19 2E-23 123.4 13.1 110 76-191 1-114 (114)
14 TIGR00068 glyox_I lactoylgluta 99.8 1.2E-18 2.7E-23 131.1 14.4 120 72-195 14-142 (150)
15 cd08364 FosX FosX, a fosfomyci 99.8 3.4E-18 7.5E-23 125.9 14.7 114 73-194 2-122 (131)
16 PRK04101 fosfomycin resistance 99.8 5.3E-18 1.2E-22 126.1 15.2 112 73-194 2-119 (139)
17 PRK10291 glyoxalase I; Provisi 99.8 2.3E-18 4.9E-23 126.2 13.0 112 80-195 1-121 (129)
18 PLN02300 lactoylglutathione ly 99.8 4.1E-18 8.9E-23 141.3 15.4 123 69-195 18-149 (286)
19 cd08347 PcpA_C_like C-terminal 99.8 7.6E-18 1.7E-22 128.1 14.7 113 75-195 1-121 (157)
20 cd08363 FosB FosB, a fosfomyci 99.8 4.7E-18 1E-22 125.3 12.8 110 76-195 1-116 (131)
21 cd08355 Glo_EDI_BRP_like_14 Th 99.8 3.3E-17 7.2E-22 118.5 16.5 116 79-194 3-122 (122)
22 cd09014 BphC-JF8_C_like C-term 99.8 1.6E-17 3.4E-22 127.5 15.4 118 71-194 2-127 (166)
23 cd07242 Glo_EDI_BRP_like_6 Thi 99.8 2.4E-17 5.2E-22 120.0 15.2 114 75-194 1-128 (128)
24 cd07257 THT_oxygenase_C The C- 99.8 4.8E-18 1E-22 128.6 11.8 113 75-193 1-124 (153)
25 cd07263 Glo_EDI_BRP_like_16 Th 99.8 2.6E-17 5.7E-22 117.3 14.8 113 78-193 1-119 (119)
26 cd07247 SgaA_N_like N-terminal 99.8 3.4E-17 7.3E-22 116.9 15.3 109 76-193 1-114 (114)
27 cd07265 2_3_CTD_N N-terminal d 99.8 2.4E-17 5.2E-22 119.3 14.5 108 73-194 2-119 (122)
28 cd07255 Glo_EDI_BRP_like_12 Th 99.8 4.6E-17 1E-21 117.9 16.0 112 74-194 1-119 (125)
29 cd07252 BphC1-RGP6_N_like N-te 99.8 2.6E-17 5.7E-22 119.1 14.5 106 75-194 2-117 (120)
30 cd08346 PcpA_N_like N-terminal 99.8 1.7E-17 3.7E-22 119.6 13.4 116 75-192 1-126 (126)
31 cd09011 Glo_EDI_BRP_like_23 Th 99.8 2.5E-17 5.5E-22 119.0 14.0 114 74-194 1-119 (120)
32 cd08361 PpCmtC_N N-terminal do 99.8 3.7E-17 8E-22 119.2 15.0 108 72-195 3-120 (124)
33 PF00903 Glyoxalase: Glyoxalas 99.8 2.1E-18 4.5E-23 124.3 8.1 117 75-191 1-128 (128)
34 cd09013 BphC-JF8_N_like N-term 99.8 3.3E-17 7.2E-22 118.5 14.4 111 71-195 2-119 (121)
35 cd07267 THT_Oxygenase_N N-term 99.8 4.4E-17 9.5E-22 116.8 14.7 106 73-193 1-109 (113)
36 cd07264 Glo_EDI_BRP_like_15 Th 99.8 4.8E-17 1E-21 117.7 14.6 115 76-194 1-125 (125)
37 cd07249 MMCE Methylmalonyl-CoA 99.8 2.8E-17 6.2E-22 119.0 12.9 118 76-193 1-128 (128)
38 cd08360 MhqB_like_C C-terminal 99.8 6.1E-17 1.3E-21 119.5 14.8 106 74-193 2-119 (134)
39 cd07246 Glo_EDI_BRP_like_8 Thi 99.8 1.4E-16 3E-21 114.5 16.3 113 79-193 5-121 (122)
40 cd08351 ChaP_like ChaP, an enz 99.7 6.8E-17 1.5E-21 117.4 14.5 106 74-195 3-122 (123)
41 cd08348 BphC2-C3-RGP6_C_like T 99.7 1.2E-16 2.6E-21 117.4 15.9 113 75-195 1-121 (134)
42 cd07244 FosA FosA, a Fosfomyci 99.7 4.4E-17 9.6E-22 118.0 13.3 106 75-193 1-109 (121)
43 cd08358 Glo_EDI_BRP_like_21 Th 99.7 7.7E-17 1.7E-21 118.4 14.3 110 75-193 2-126 (127)
44 cd07256 HPCD_C_class_II C-term 99.7 8.8E-17 1.9E-21 122.6 15.1 112 74-194 2-123 (161)
45 cd07237 BphC1-RGP6_C_like C-te 99.7 6.7E-17 1.5E-21 122.4 14.1 112 73-194 7-131 (154)
46 cd08362 BphC5-RrK37_N_like N-t 99.7 8.3E-17 1.8E-21 115.7 13.8 108 73-194 1-117 (120)
47 cd07240 ED_TypeI_classII_N N-t 99.7 1.3E-16 2.7E-21 114.0 14.2 106 74-194 1-114 (117)
48 cd08345 Fosfomycin_RP Fosfomyc 99.7 9.4E-17 2E-21 114.3 12.5 105 78-194 1-111 (113)
49 cd08359 Glo_EDI_BRP_like_22 Th 99.7 2.6E-16 5.7E-21 113.0 14.6 109 78-193 4-119 (119)
50 cd07239 BphC5-RK37_C_like C-te 99.7 2.5E-16 5.3E-21 118.1 14.1 105 74-194 3-117 (144)
51 cd07235 MRD Mitomycin C resist 99.7 2.9E-16 6.4E-21 113.4 13.6 112 76-192 1-121 (122)
52 cd08354 Glo_EDI_BRP_like_13 Th 99.7 4E-16 8.6E-21 112.2 14.1 113 76-193 1-121 (122)
53 cd08343 ED_TypeI_classII_C C-t 99.7 5.6E-16 1.2E-20 113.8 15.0 107 77-194 1-117 (131)
54 cd08349 BLMA_like Bleomycin bi 99.7 7.8E-16 1.7E-20 109.0 14.6 105 80-193 3-112 (112)
55 cd09012 Glo_EDI_BRP_like_24 Th 99.7 3.8E-16 8.3E-21 113.4 13.0 113 76-193 1-123 (124)
56 cd08350 BLMT_like BLMT, a bleo 99.7 5.5E-16 1.2E-20 112.0 13.7 104 78-194 5-119 (120)
57 cd06587 Glo_EDI_BRP_like This 99.7 6.2E-16 1.3E-20 107.7 13.2 108 78-191 1-112 (112)
58 PRK06724 hypothetical protein; 99.7 5.6E-16 1.2E-20 114.0 13.5 107 73-195 5-124 (128)
59 cd08357 Glo_EDI_BRP_like_18 Th 99.7 7.9E-16 1.7E-20 111.1 13.6 111 78-194 2-125 (125)
60 cd07266 HPCD_N_class_II N-term 99.7 7.7E-16 1.7E-20 111.0 13.3 107 73-194 2-118 (121)
61 cd08356 Glo_EDI_BRP_like_17 Th 99.7 9.3E-16 2E-20 110.1 12.6 100 79-193 5-113 (113)
62 cd07254 Glo_EDI_BRP_like_20 Th 99.7 2.6E-15 5.6E-20 108.2 14.9 107 77-195 3-118 (120)
63 cd07258 PpCmtC_C C-terminal do 99.7 1.1E-15 2.4E-20 114.3 12.9 104 77-193 1-113 (141)
64 TIGR03211 catechol_2_3 catecho 99.7 1.3E-15 2.9E-20 126.9 14.6 114 69-192 139-263 (303)
65 cd07262 Glo_EDI_BRP_like_19 Th 99.7 2.7E-15 5.9E-20 108.4 13.6 107 76-192 1-122 (123)
66 PF12681 Glyoxalase_2: Glyoxal 99.7 4.1E-15 8.9E-20 104.8 13.8 100 81-192 1-108 (108)
67 cd07238 Glo_EDI_BRP_like_5 Thi 99.7 4.7E-15 1E-19 105.6 14.1 102 78-194 3-111 (112)
68 cd07261 Glo_EDI_BRP_like_11 Th 99.7 4.8E-15 1E-19 105.8 13.8 106 79-193 2-114 (114)
69 TIGR02295 HpaD 3,4-dihydroxyph 99.7 3.6E-15 7.8E-20 123.7 14.7 115 69-194 130-256 (294)
70 cd08344 MhqB_like_N N-terminal 99.7 5E-15 1.1E-19 105.8 13.3 100 75-193 2-108 (112)
71 cd07251 Glo_EDI_BRP_like_10 Th 99.6 5.4E-15 1.2E-19 106.0 13.0 110 79-193 2-120 (121)
72 TIGR03213 23dbph12diox 2,3-dih 99.6 4.7E-15 1E-19 122.8 14.0 107 73-193 1-117 (286)
73 TIGR03213 23dbph12diox 2,3-dih 99.6 9.7E-15 2.1E-19 120.9 15.1 112 73-193 140-262 (286)
74 TIGR03211 catechol_2_3 catecho 99.6 1.5E-14 3.4E-19 120.5 13.4 105 73-194 2-118 (303)
75 KOG2944 Glyoxalase [Carbohydra 99.6 2.3E-14 5E-19 106.4 11.8 120 74-194 41-168 (170)
76 TIGR02295 HpaD 3,4-dihydroxyph 99.6 5.2E-14 1.1E-18 116.7 14.9 107 73-194 2-115 (294)
77 PF13669 Glyoxalase_4: Glyoxal 99.6 1.2E-14 2.7E-19 103.6 9.5 94 77-172 1-96 (109)
78 PLN02300 lactoylglutathione ly 99.6 5.4E-14 1.2E-18 116.7 14.1 119 73-195 152-279 (286)
79 COG3565 Predicted dioxygenase 99.5 1E-12 2.2E-17 92.6 11.0 111 76-194 5-129 (138)
80 COG3324 Predicted enzyme relat 99.4 7.7E-12 1.7E-16 91.1 13.1 113 74-195 8-126 (127)
81 COG2514 Predicted ring-cleavag 99.4 5E-12 1.1E-16 101.9 13.2 112 74-194 9-126 (265)
82 COG3607 Predicted lactoylgluta 99.4 3.1E-12 6.8E-17 91.5 10.3 118 75-196 3-129 (133)
83 cd07250 HPPD_C_like C-terminal 99.3 8.1E-12 1.8E-16 97.9 9.4 99 74-172 2-111 (191)
84 cd06588 PhnB_like Escherichia 99.3 3.1E-10 6.8E-15 83.1 14.4 108 79-192 3-128 (128)
85 KOG2943 Predicted glyoxalase [ 99.3 2.8E-11 6.1E-16 95.7 8.5 116 74-193 16-142 (299)
86 TIGR01263 4HPPD 4-hydroxypheny 99.2 2.1E-10 4.5E-15 98.0 12.7 105 69-173 152-267 (353)
87 COG0346 GloA Lactoylglutathion 99.2 5.9E-11 1.3E-15 84.7 7.0 120 74-193 1-138 (138)
88 COG2764 PhnB Uncharacterized p 99.2 2.6E-09 5.5E-14 79.0 14.7 113 80-195 5-132 (136)
89 TIGR01263 4HPPD 4-hydroxypheny 99.1 2.1E-09 4.6E-14 91.8 14.4 97 75-172 2-100 (353)
90 PLN02875 4-hydroxyphenylpyruva 98.9 9.9E-09 2.1E-13 88.5 10.5 101 71-171 176-293 (398)
91 PRK01037 trmD tRNA (guanine-N( 98.8 3.8E-08 8.2E-13 82.7 10.0 103 75-194 247-354 (357)
92 PF13468 Glyoxalase_3: Glyoxal 98.7 4.9E-08 1.1E-12 75.3 7.2 93 76-168 1-101 (175)
93 KOG2943 Predicted glyoxalase [ 98.7 1.2E-07 2.6E-12 75.4 8.5 110 75-194 149-270 (299)
94 COG2514 Predicted ring-cleavag 98.6 4.5E-07 9.7E-12 73.4 9.7 97 73-192 166-264 (265)
95 PF14506 CppA_N: CppA N-termin 98.5 4.6E-06 1E-10 59.7 12.9 110 77-195 2-115 (125)
96 PRK10148 hypothetical protein; 98.5 1.2E-05 2.7E-10 60.4 15.2 108 80-194 6-141 (147)
97 PF14696 Glyoxalase_5: Hydroxy 98.4 1.8E-06 3.9E-11 64.2 7.3 121 68-193 2-125 (139)
98 PLN02875 4-hydroxyphenylpyruva 98.2 3.6E-05 7.7E-10 66.7 13.3 118 76-193 1-150 (398)
99 COG3185 4-hydroxyphenylpyruvat 98.0 1.7E-05 3.6E-10 66.6 7.0 103 70-172 162-273 (363)
100 KOG0638 4-hydroxyphenylpyruvat 98.0 2.2E-05 4.8E-10 65.0 7.5 103 71-173 13-120 (381)
101 PF06983 3-dmu-9_3-mt: 3-demet 97.4 0.0047 1E-07 44.5 11.4 96 84-192 11-116 (116)
102 COG3185 4-hydroxyphenylpyruvat 97.3 0.0038 8.3E-08 52.7 11.0 117 65-186 12-142 (363)
103 PF15067 FAM124: FAM124 family 97.1 0.0038 8.3E-08 49.9 8.5 103 75-191 128-235 (236)
104 KOG0638 4-hydroxyphenylpyruvat 96.3 0.0031 6.6E-08 52.6 2.8 124 71-194 174-337 (381)
105 PF13669 Glyoxalase_4: Glyoxal 95.9 0.044 9.4E-07 38.4 6.8 50 146-195 1-56 (109)
106 PF14507 CppA_C: CppA C-termin 95.2 0.061 1.3E-06 37.7 5.4 91 75-189 5-98 (101)
107 KOG2944 Glyoxalase [Carbohydra 94.2 0.23 5E-06 37.5 6.6 53 74-128 114-167 (170)
108 cd08353 Glo_EDI_BRP_like_7 Thi 93.7 0.28 6.2E-06 35.5 6.4 54 74-128 86-140 (142)
109 PLN02367 lactoylglutathione ly 92.3 0.86 1.9E-05 36.9 7.6 56 74-131 168-224 (233)
110 cd07249 MMCE Methylmalonyl-CoA 92.1 0.79 1.7E-05 32.0 6.7 53 74-127 71-127 (128)
111 cd08342 HPPD_N_like N-terminal 91.2 1.4 3.1E-05 31.8 7.3 58 74-132 68-126 (136)
112 PRK11478 putative lyase; Provi 90.8 1.7 3.8E-05 30.6 7.4 54 74-128 74-128 (129)
113 cd08347 PcpA_C_like C-terminal 90.5 1.6 3.4E-05 32.8 7.1 51 144-194 1-53 (157)
114 cd08352 Glo_EDI_BRP_like_1 Thi 90.0 2.8 6.2E-05 28.9 7.8 50 144-193 3-57 (125)
115 PF13670 PepSY_2: Peptidase pr 89.8 1.4 3.1E-05 29.3 5.8 40 154-193 30-72 (83)
116 PLN03042 Lactoylglutathione ly 88.7 2.9 6.2E-05 32.5 7.6 56 74-131 120-176 (185)
117 cd07242 Glo_EDI_BRP_like_6 Thi 88.7 2.5 5.5E-05 29.6 6.8 50 144-194 1-54 (128)
118 cd07268 Glo_EDI_BRP_like_4 Thi 88.6 8.5 0.00018 28.9 10.6 73 76-153 2-81 (149)
119 PF06185 YecM: YecM protein; 88.5 5.1 0.00011 31.2 8.6 77 74-153 33-114 (185)
120 TIGR03645 glyox_marine lactoyl 87.7 3.6 7.7E-05 30.9 7.4 52 144-195 4-78 (162)
121 cd06587 Glo_EDI_BRP_like This 87.3 3 6.5E-05 27.5 6.3 48 147-195 1-51 (112)
122 PRK10291 glyoxalase I; Provisi 87.3 4.1 8.9E-05 28.9 7.3 57 74-131 64-122 (129)
123 TIGR03081 metmalonyl_epim meth 86.9 2.7 5.9E-05 29.3 6.1 53 74-127 71-127 (128)
124 cd08346 PcpA_N_like N-terminal 86.6 4.4 9.5E-05 28.0 7.0 51 144-194 1-60 (126)
125 cd07245 Glo_EDI_BRP_like_9 Thi 86.0 3.2 6.8E-05 27.8 5.9 50 145-194 1-52 (114)
126 PRK11700 hypothetical protein; 86.0 9.8 0.00021 29.7 8.9 76 73-153 37-119 (187)
127 cd07233 Glyoxalase_I Glyoxalas 85.5 4.8 0.0001 27.7 6.7 50 145-194 1-58 (121)
128 cd07235 MRD Mitomycin C resist 85.4 3.6 7.8E-05 28.6 6.1 46 146-191 2-47 (122)
129 cd08348 BphC2-C3-RGP6_C_like T 84.9 7.5 0.00016 27.5 7.7 50 145-194 2-54 (134)
130 cd07241 Glo_EDI_BRP_like_3 Thi 84.5 7.3 0.00016 26.8 7.3 50 145-194 2-56 (125)
131 PF12681 Glyoxalase_2: Glyoxal 83.0 5.5 0.00012 26.8 6.0 54 73-127 54-108 (108)
132 cd07263 Glo_EDI_BRP_like_16 Th 82.7 5.7 0.00012 26.9 6.1 31 74-105 66-96 (119)
133 cd07255 Glo_EDI_BRP_like_12 Th 82.5 9.1 0.0002 26.5 7.2 48 144-193 2-51 (125)
134 cd07252 BphC1-RGP6_N_like N-te 81.0 9.7 0.00021 26.5 6.8 48 144-192 2-51 (120)
135 TIGR00068 glyox_I lactoylgluta 79.5 8.9 0.00019 28.0 6.4 57 74-131 85-143 (150)
136 cd08359 Glo_EDI_BRP_like_22 Th 79.5 11 0.00023 26.0 6.6 49 78-127 69-118 (119)
137 cd07238 Glo_EDI_BRP_like_5 Thi 77.2 19 0.0004 24.5 7.2 52 76-128 58-110 (112)
138 cd07253 Glo_EDI_BRP_like_2 Thi 77.0 12 0.00026 25.6 6.3 30 144-173 3-33 (125)
139 cd07262 Glo_EDI_BRP_like_19 Th 76.6 13 0.00029 25.7 6.4 47 146-193 2-53 (123)
140 cd08344 MhqB_like_N N-terminal 75.5 17 0.00038 24.8 6.7 29 144-172 2-30 (112)
141 PF00903 Glyoxalase: Glyoxalas 74.3 18 0.00039 24.7 6.6 29 144-172 1-30 (128)
142 cd08360 MhqB_like_C C-terminal 73.4 26 0.00057 24.9 7.4 49 144-193 3-55 (134)
143 cd07247 SgaA_N_like N-terminal 72.7 27 0.00058 23.6 7.3 52 75-127 61-113 (114)
144 cd07240 ED_TypeI_classII_N N-t 72.4 22 0.00047 24.1 6.6 39 144-184 2-41 (117)
145 cd07246 Glo_EDI_BRP_like_8 Thi 72.4 24 0.00052 24.0 6.8 52 75-127 68-120 (122)
146 cd07267 THT_Oxygenase_N N-term 69.5 32 0.00069 23.5 6.9 53 74-128 56-109 (113)
147 cd07264 Glo_EDI_BRP_like_15 Th 69.1 32 0.00068 23.6 6.9 26 77-103 73-98 (125)
148 COG3865 Uncharacterized protei 68.3 48 0.001 24.8 12.3 101 81-192 11-122 (151)
149 cd07265 2_3_CTD_N N-terminal d 67.4 35 0.00075 23.5 6.8 30 144-173 4-34 (122)
150 PRK04101 fosfomycin resistance 67.0 31 0.00068 24.7 6.7 56 74-130 62-120 (139)
151 cd09011 Glo_EDI_BRP_like_23 Th 66.8 35 0.00076 23.5 6.7 53 75-128 64-118 (120)
152 cd07237 BphC1-RGP6_C_like C-te 66.8 37 0.0008 25.0 7.1 51 143-193 8-67 (154)
153 cd07257 THT_oxygenase_C The C- 65.3 45 0.00098 24.5 7.4 56 74-129 66-125 (153)
154 cd08345 Fosfomycin_RP Fosfomyc 64.5 23 0.0005 23.9 5.3 53 75-128 55-110 (113)
155 cd09012 Glo_EDI_BRP_like_24 Th 64.3 33 0.00072 23.8 6.2 26 146-171 2-27 (124)
156 cd08364 FosX FosX, a fosfomyci 64.2 39 0.00084 24.0 6.6 28 75-103 66-95 (131)
157 cd08363 FosB FosB, a fosfomyci 63.3 38 0.00083 24.0 6.5 27 145-171 1-28 (131)
158 cd08349 BLMA_like Bleomycin bi 62.3 39 0.00085 22.5 6.2 26 74-100 57-82 (112)
159 cd04882 ACT_Bt0572_2 C-termina 61.7 25 0.00053 21.3 4.6 26 144-169 39-64 (65)
160 cd07239 BphC5-RK37_C_like C-te 61.2 44 0.00095 24.3 6.6 27 144-170 4-31 (144)
161 cd09013 BphC-JF8_N_like N-term 60.3 36 0.00077 23.5 5.8 52 75-128 62-117 (121)
162 cd07266 HPCD_N_class_II N-term 60.0 48 0.001 22.6 6.4 29 144-172 4-33 (121)
163 cd08351 ChaP_like ChaP, an enz 59.8 53 0.0012 22.7 6.6 48 144-193 4-52 (123)
164 PRK06724 hypothetical protein; 59.7 57 0.0012 23.3 6.8 54 75-129 63-123 (128)
165 cd04883 ACT_AcuB C-terminal AC 59.2 28 0.0006 21.7 4.6 28 145-172 42-71 (72)
166 cd08354 Glo_EDI_BRP_like_13 Th 58.5 31 0.00068 23.5 5.2 54 73-128 65-121 (122)
167 cd08361 PpCmtC_N N-terminal do 57.4 57 0.0012 22.7 6.5 47 144-192 6-54 (124)
168 cd08362 BphC5-RrK37_N_like N-t 56.9 50 0.0011 22.4 6.0 29 144-172 3-32 (120)
169 cd07250 HPPD_C_like C-terminal 56.4 18 0.00038 28.0 3.9 29 74-103 82-110 (191)
170 cd08343 ED_TypeI_classII_C C-t 55.9 57 0.0012 22.9 6.3 48 146-193 1-53 (131)
171 PF13468 Glyoxalase_3: Glyoxal 55.6 86 0.0019 23.5 8.4 91 73-164 75-173 (175)
172 cd07251 Glo_EDI_BRP_like_10 Th 54.6 54 0.0012 22.1 5.9 44 148-193 2-46 (121)
173 cd07243 2_3_CTD_C C-terminal d 54.4 66 0.0014 23.3 6.5 55 74-128 66-124 (143)
174 cd07258 PpCmtC_C C-terminal do 53.3 81 0.0018 22.9 6.8 56 74-129 55-114 (141)
175 cd04895 ACT_ACR_1 ACT domain-c 52.7 37 0.0008 22.1 4.3 35 155-189 15-55 (72)
176 PF09142 TruB_C: tRNA Pseudour 51.8 32 0.00069 21.2 3.7 42 153-195 4-45 (56)
177 cd08350 BLMT_like BLMT, a bleo 50.2 79 0.0017 21.7 6.2 24 77-101 60-83 (120)
178 PF02208 Sorb: Sorbin homologo 49.3 4 8.7E-05 24.1 -0.6 25 73-97 9-33 (47)
179 cd07244 FosA FosA, a Fosfomyci 48.3 88 0.0019 21.5 6.8 29 144-172 1-30 (121)
180 cd07261 Glo_EDI_BRP_like_11 Th 48.0 83 0.0018 21.1 6.4 29 74-103 58-89 (114)
181 cd08355 Glo_EDI_BRP_like_14 Th 47.9 88 0.0019 21.4 7.1 52 75-127 68-120 (122)
182 cd08358 Glo_EDI_BRP_like_21 Th 46.9 1.1E+02 0.0023 22.1 7.9 28 144-171 2-30 (127)
183 PF07063 DUF1338: Domain of un 43.8 24 0.00052 29.7 2.9 30 141-170 181-216 (302)
184 cd04906 ACT_ThrD-I_1 First of 37.5 82 0.0018 20.7 4.3 29 144-172 40-72 (85)
185 KOG4657 Uncharacterized conser 35.9 27 0.00058 28.1 1.9 21 84-104 145-165 (246)
186 cd07254 Glo_EDI_BRP_like_20 Th 34.2 1.5E+02 0.0032 20.1 7.2 55 74-128 57-116 (120)
187 PF07494 Reg_prop: Two compone 33.2 52 0.0011 16.3 2.2 14 177-190 7-20 (24)
188 cd09014 BphC-JF8_C_like C-term 33.1 1.6E+02 0.0035 21.8 5.9 56 74-129 68-127 (166)
189 cd07256 HPCD_C_class_II C-term 31.0 2.2E+02 0.0047 20.9 7.1 27 144-170 3-30 (161)
190 PRK09437 bcp thioredoxin-depen 29.5 2.2E+02 0.0048 20.5 6.2 17 177-193 121-137 (154)
191 PF14133 DUF4300: Domain of un 27.9 1.2E+02 0.0026 24.9 4.5 37 155-191 150-186 (250)
192 COG1225 Bcp Peroxiredoxin [Pos 27.9 2.7E+02 0.0058 21.1 6.1 49 144-192 64-136 (157)
193 PF14907 NTP_transf_5: Unchara 27.3 2.3E+02 0.0051 22.2 6.2 45 148-193 97-143 (249)
194 PF13176 TPR_7: Tetratricopept 26.9 43 0.00093 18.1 1.3 18 82-99 11-28 (36)
195 PF10706 Aminoglyc_resit: Amin 26.5 2.3E+02 0.005 21.8 5.5 26 147-172 46-71 (174)
196 PF06923 GutM: Glucitol operon 25.7 2.4E+02 0.0053 19.8 5.6 43 152-195 23-71 (109)
197 cd04897 ACT_ACR_3 ACT domain-c 25.2 1.8E+02 0.0039 19.0 4.2 34 156-189 16-55 (75)
198 cd04885 ACT_ThrD-I Tandem C-te 25.2 1.1E+02 0.0023 19.1 3.1 26 144-169 38-66 (68)
199 cd04908 ACT_Bt0572_1 N-termina 24.4 1.5E+02 0.0033 18.1 3.7 24 147-170 42-65 (66)
200 COG3102 Uncharacterized protei 24.3 3.4E+02 0.0074 21.0 7.8 87 71-161 35-128 (185)
201 KOG2668 Flotillins [Intracellu 24.0 2.4E+02 0.0053 24.5 5.7 34 64-97 53-86 (428)
202 COG3603 Uncharacterized conser 23.9 86 0.0019 22.7 2.6 25 146-170 103-127 (128)
203 COG4747 ACT domain-containing 23.0 86 0.0019 22.8 2.5 88 75-172 41-136 (142)
204 COG0456 RimI Acetyltransferase 22.6 1.2E+02 0.0026 22.1 3.5 29 77-106 127-156 (177)
205 PTZ00330 acetyltransferase; Pr 22.2 1.3E+02 0.0027 21.2 3.4 26 75-103 115-140 (147)
206 cd04886 ACT_ThrD-II-like C-ter 22.2 1.9E+02 0.0041 17.3 4.1 25 146-170 45-72 (73)
207 PHA02103 hypothetical protein 21.6 2.5E+02 0.0054 19.9 4.5 36 157-192 90-134 (135)
208 PRK13498 chemoreceptor glutami 21.2 2E+02 0.0044 21.9 4.4 40 150-189 112-154 (167)
209 cd02966 TlpA_like_family TlpA- 20.9 2.5E+02 0.0053 18.1 6.4 49 144-192 52-114 (116)
210 PF03975 CheD: CheD chemotacti 20.9 1.5E+02 0.0033 20.8 3.5 38 152-189 63-103 (114)
211 PF00578 AhpC-TSA: AhpC/TSA fa 20.1 1.9E+02 0.004 19.7 3.9 46 144-189 59-122 (124)
No 1
>PLN02367 lactoylglutathione lyase
Probab=99.86 E-value=4.5e-20 Score=147.30 Aligned_cols=122 Identities=16% Similarity=0.227 Sum_probs=95.4
Q ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeC-------------------CeEEEEEecCCCCC
Q 029285 74 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-------------------AEMIHLMELPNPDP 134 (196)
Q Consensus 74 ~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g-------------------~~~l~l~~~~~~~~ 134 (196)
-.+.|++|+|+|++++++||+++|||++..+.+.++..+..+|+..+ +..++|........
T Consensus 74 ~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e~ 153 (233)
T PLN02367 74 YIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTES 153 (233)
T ss_pred cEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCCc
Confidence 47899999999999999999999999999887777766777777531 24788876544321
Q ss_pred --CCCCC--C--CCCCceEEEEEECCHHHHHHHHHHCCCeEEeeCC-C--ceEEEEEcCCCCeEEEEeec
Q 029285 135 --LSGRP--E--HGGRDRHTCIAIRDVSKLKMILDKAGISYTLSKS-G--RPAIFTRDPDANALEFTQVD 195 (196)
Q Consensus 135 --~~~~p--~--~~~~~~hi~f~v~dl~~~~~~l~~~G~~~~~~~~-g--~~~~~~~DPdG~~iEl~e~~ 195 (196)
..... . ...+.+||||.|+|+++++++|+++|+++...+. + .+.+|++|||||.|||+|..
T Consensus 154 ~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~~riaFIkDPDGn~IEL~e~~ 223 (233)
T PLN02367 154 DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKMKGIAFIKDPDGYWIEIFDLK 223 (233)
T ss_pred cccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCceEEEEEECCCCCEEEEEecc
Confidence 11111 1 1257899999999999999999999999976542 2 46789999999999999865
No 2
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.86 E-value=3.8e-20 Score=137.53 Aligned_cols=121 Identities=21% Similarity=0.343 Sum_probs=90.7
Q ss_pred eceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCC-----------CCceeEEEEe--CCeEEEEEecCCCCCCCC--
Q 029285 73 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDK-----------LPYRGAWLWV--GAEMIHLMELPNPDPLSG-- 137 (196)
Q Consensus 73 i~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~-----------~~~~~~~l~~--g~~~l~l~~~~~~~~~~~-- 137 (196)
+.+++||+|.|+|+++|++||++ |||++..+....+ .....+++.. ++..++|+....+.....
T Consensus 1 ~~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~~~~~~~~~~ 79 (142)
T cd08353 1 VSRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFHHPAVIADHR 79 (142)
T ss_pred CceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEecCCCCcCcCC
Confidence 35899999999999999999999 9999875443211 1123345543 456889987654432211
Q ss_pred -CCCCCCCceEEEEEECCHHHHHHHHHHCCCeEEeeC----CCceEEEEEcCCCCeEEEEee
Q 029285 138 -RPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQV 194 (196)
Q Consensus 138 -~p~~~~~~~hi~f~v~dl~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~iEl~e~ 194 (196)
....+.+..|+||.|+|+++++++|+++|+++..++ .+.+.+|++||||+.|||.|.
T Consensus 80 ~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 80 PAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYENSYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCCCeEEEEEECCCCCEEEeeec
Confidence 123455788999999999999999999999986543 457889999999999999984
No 3
>PRK11478 putative lyase; Provisional
Probab=99.85 E-value=4.9e-20 Score=134.41 Aligned_cols=122 Identities=24% Similarity=0.380 Sum_probs=88.2
Q ss_pred ceeceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEe-CCeEEEEEecCCCCCCCCCCCCCCCceEEE
Q 029285 71 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTC 149 (196)
Q Consensus 71 ~~i~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~-g~~~l~l~~~~~~~~~~~~p~~~~~~~hi~ 149 (196)
+.+.+++||+|.|+|+++|++||+++|||++..+...+........+.. ++..++|+..+.+......+ ...+..|++
T Consensus 2 ~~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~-~~~g~~hi~ 80 (129)
T PRK11478 2 LGLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGDLALNGQYVIELFSFPFPPERPSRP-EACGLRHLA 80 (129)
T ss_pred CCcceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccceeeEecCCCcEEEEEEecCCCCCCCCC-CCCceeEEE
Confidence 3567899999999999999999999999998643221111111122333 44578887654332211111 234678999
Q ss_pred EEECCHHHHHHHHHHCCCeEEee----CCCceEEEEEcCCCCeEEEEe
Q 029285 150 IAIRDVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 193 (196)
Q Consensus 150 f~v~dl~~~~~~l~~~G~~~~~~----~~g~~~~~~~DPdG~~iEl~e 193 (196)
|.|+|+++++++|+++|+++... ..|.+.+|++|||||.|||+|
T Consensus 81 f~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 81 FSVDDIDAAVAHLESHNVKCEAIRVDPYTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred EEeCCHHHHHHHHHHcCCeeeccccCCCCCCEEEEEECCCCCEEEEEe
Confidence 99999999999999999998643 246788999999999999987
No 4
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.84 E-value=2.2e-19 Score=139.94 Aligned_cols=123 Identities=17% Similarity=0.220 Sum_probs=92.6
Q ss_pred eceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEe-------------------CCeEEEEEecCCCC
Q 029285 73 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-------------------GAEMIHLMELPNPD 133 (196)
Q Consensus 73 i~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~-------------------g~~~l~l~~~~~~~ 133 (196)
--++.|++|+|.|+++|++||+++|||++..+...+...+..+|+.. ++..++|+......
T Consensus 25 ~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~~ 104 (185)
T PLN03042 25 GYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGTE 104 (185)
T ss_pred CcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCCc
Confidence 35799999999999999999999999999887655454455555542 23478888654332
Q ss_pred CCC------CCCCCCCCceEEEEEECCHHHHHHHHHHCCCeEEeeCC---CceEEEEEcCCCCeEEEEeec
Q 029285 134 PLS------GRPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSKS---GRPAIFTRDPDANALEFTQVD 195 (196)
Q Consensus 134 ~~~------~~p~~~~~~~hi~f~v~dl~~~~~~l~~~G~~~~~~~~---g~~~~~~~DPdG~~iEl~e~~ 195 (196)
..+ ..+..+.++.|++|.|+|+++++++|+++|+.+...+. +.+.+|++|||||.|||++..
T Consensus 105 ~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~~~~~~fi~DPdG~~IEl~e~~ 175 (185)
T PLN03042 105 SDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGKMKGLAFIKDPDGYWIEIFDLK 175 (185)
T ss_pred ccccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCCceeEEEEECCCCCEEEEEECC
Confidence 110 01112347899999999999999999999999875442 346688899999999999864
No 5
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.83 E-value=1.7e-19 Score=130.18 Aligned_cols=117 Identities=23% Similarity=0.318 Sum_probs=85.7
Q ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeC-CeEEEEEecCCCCCCCCCCCCCCCceEEEEEEC
Q 029285 75 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-AEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR 153 (196)
Q Consensus 75 ~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g-~~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v~ 153 (196)
+++||+|.|+|++++++||+++|||++..+...+...+...|+..+ +..++|+..+...... ......+..|+||.|+
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~g~~hi~f~v~ 79 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDDGARLELMTRPDIAPSP-NEGERTGWAHLAFSVG 79 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCCCcEEEEEcCcccCCCc-ccCCCCceEEEEEECC
Confidence 4789999999999999999999999986543322333445677664 4578888644322111 1123346789999996
Q ss_pred ---CHHHHHHHHHHCCCeEEeeC----CCceEEEEEcCCCCeEEEE
Q 029285 154 ---DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFT 192 (196)
Q Consensus 154 ---dl~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~iEl~ 192 (196)
++++++++|+++|+++...+ .|.+.++++|||||.|||.
T Consensus 80 ~~~~v~~~~~~l~~~g~~~~~~~~~~~~g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 80 SKEAVDELTERLRADGYLIIGEPRTTGDGYYESVILDPEGNRIEIT 125 (125)
T ss_pred CHHHHHHHHHHHHHCCCEEEeCceecCCCeEEEEEECCCCCEEEeC
Confidence 58999999999999987643 3456688999999999983
No 6
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.83 E-value=2.5e-19 Score=136.95 Aligned_cols=122 Identities=22% Similarity=0.272 Sum_probs=90.2
Q ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeeec----CC--------------CCCCceeEEEEeC-CeEEEEEecCCCCC
Q 029285 74 VSVHHVGILCENLERSLEFYQNILGLEINEAR----PH--------------DKLPYRGAWLWVG-AEMIHLMELPNPDP 134 (196)
Q Consensus 74 ~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~----~~--------------~~~~~~~~~l~~g-~~~l~l~~~~~~~~ 134 (196)
.+++||+|.|.|+++|++||+++|||++..+. +. .......+++..+ +..++|++...+..
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~~~~ 82 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKNQEN 82 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccCCCC
Confidence 57999999999999999999999999875321 11 0112445667655 45799998765433
Q ss_pred CCCC-CCCCCCceEEEEEECCHHHHHHHHHHCCCeEEeeC-----C---CceEEEEEcCCCCeEEEEeec
Q 029285 135 LSGR-PEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSK-----S---GRPAIFTRDPDANALEFTQVD 195 (196)
Q Consensus 135 ~~~~-p~~~~~~~hi~f~v~dl~~~~~~l~~~G~~~~~~~-----~---g~~~~~~~DPdG~~iEl~e~~ 195 (196)
+... ...+.+..|+||.|+|+++++++|+++|+.+.... . +.+.+|++|||||.|||++.+
T Consensus 83 ~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 152 (162)
T TIGR03645 83 PEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHS 152 (162)
T ss_pred CCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcC
Confidence 2221 12346789999999999999999999998753321 1 247899999999999999864
No 7
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.83 E-value=3.4e-19 Score=128.31 Aligned_cols=119 Identities=27% Similarity=0.453 Sum_probs=87.2
Q ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEe-CCeEEEEEecCCCCCCCCCCCCCCCceEEEEEE
Q 029285 74 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 152 (196)
Q Consensus 74 ~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~-g~~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v 152 (196)
.+++||+|.|.|++++++||+++|||++...............+.. ++..++++...........+ .+.+..|++|.|
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~-~~~g~~h~~~~v 80 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNGGYQLELFSFPNPPERPSYP-EACGLRHLAFSV 80 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCCCcEEEEEEcCCCCCCCCCC-cCCCceEEEEEe
Confidence 5789999999999999999999999998765322221111223333 45677777654332211112 235678999999
Q ss_pred CCHHHHHHHHHHCCCeEEeeC----CCceEEEEEcCCCCeEEEEe
Q 029285 153 RDVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQ 193 (196)
Q Consensus 153 ~dl~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~iEl~e 193 (196)
+|+++++++++++|+++...+ .+.+.+|++||+||.|||+|
T Consensus 81 ~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 81 EDIEAAVKHLKAKGVEVEPIRVDEFTGKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred CCHHHHHHHHHHcCCccccccccCCCceEEEEEECCCCCEEEecC
Confidence 999999999999999886532 35678999999999999986
No 8
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.82 E-value=3.1e-19 Score=132.25 Aligned_cols=118 Identities=12% Similarity=0.039 Sum_probs=89.2
Q ss_pred eeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCeEEEEEecCCCCCCCC--CCCCCCCceEEEEEEC
Q 029285 76 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSG--RPEHGGRDRHTCIAIR 153 (196)
Q Consensus 76 l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~--~p~~~~~~~hi~f~v~ 153 (196)
++|++|.|.|++++++||+++|||++......+ .....++..++..+.|........... ....+.+..|++|.|+
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~--~~~~~~~~~g~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia~~V~ 78 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE--DKASYLLRQGDINFVLNSPLNSFAPVADFLEKHGDGVCDVAFRVD 78 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC--ceEEEEEEcCCEEEEEecCCCCCCchHHHHHhcCCceEEEEEEeC
Confidence 589999999999999999999999998754432 123355555666777665433221111 1224567789999999
Q ss_pred CHHHHHHHHHHCCCeEEeeC----CCceEEEEEcCCCCeEEEEeec
Q 029285 154 DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQVD 195 (196)
Q Consensus 154 dl~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~iEl~e~~ 195 (196)
|+++++++|+++|+++..++ .+.+.++++||||+.|||.|..
T Consensus 79 Dvda~~~~l~~~G~~v~~~p~~~~~~~~~~~i~dp~G~~ie~~~~~ 124 (136)
T cd08342 79 DAAAAYERAVARGAKPVQEPVEEPGELKIAAIKGYGDSLHTLVDRK 124 (136)
T ss_pred CHHHHHHHHHHcCCeEccCceecCCeEEEEEEeccCCcEEEEEecC
Confidence 99999999999999996443 4568999999999999999964
No 9
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.81 E-value=1.1e-18 Score=130.71 Aligned_cols=114 Identities=17% Similarity=0.252 Sum_probs=82.9
Q ss_pred ceeceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCC-ceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEE
Q 029285 71 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLP-YRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTC 149 (196)
Q Consensus 71 ~~i~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~-~~~~~l~~g~~~l~l~~~~~~~~~~~~p~~~~~~~hi~ 149 (196)
+.+.+++||+|.|+|++++++||+++|||++..+...+... ....|+..+.. .+....... | +++.+|+|
T Consensus 2 ~~~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~-~h~~~~~~~------~--~~~~~Hia 72 (143)
T cd07243 2 IGAHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNK-PHDIAFVGG------P--DGKLHHFS 72 (143)
T ss_pred CCCceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCC-cceEEEecC------C--CCCceEEE
Confidence 34678999999999999999999999999987654322211 23567765443 222222111 1 24678999
Q ss_pred EEECCHHH---HHHHHHHCCCeEEeeC-----CCceEEEEEcCCCCeEEEEe
Q 029285 150 IAIRDVSK---LKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQ 193 (196)
Q Consensus 150 f~v~dl~~---~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdG~~iEl~e 193 (196)
|.|+|+++ +.++|+++|+++...+ .+++.+||+|||||.|||.+
T Consensus 73 f~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~ 124 (143)
T cd07243 73 FFLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFA 124 (143)
T ss_pred EEcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEec
Confidence 99999887 5689999999986543 23578999999999999975
No 10
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.81 E-value=1.6e-18 Score=124.66 Aligned_cols=114 Identities=21% Similarity=0.315 Sum_probs=86.5
Q ss_pred eeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCC----eEEEEEecCCCCCCCCCCCCCCCceEEEEE
Q 029285 76 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA----EMIHLMELPNPDPLSGRPEHGGRDRHTCIA 151 (196)
Q Consensus 76 l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~----~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~ 151 (196)
+.||+|.|+|+++|++||+++|||++....+.++.....+|+..++ ..+++........ ....+.+..|++|.
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~i~~~ 77 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEE---PYDNGNGFGHLAFA 77 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCC---CcCCCCCeEEEEEE
Confidence 5799999999999999999999999887544333334556777654 4566654322211 11223467899999
Q ss_pred ECCHHHHHHHHHHCCCeEEeeC---CCceEEEEEcCCCCeEEEE
Q 029285 152 IRDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFT 192 (196)
Q Consensus 152 v~dl~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdG~~iEl~ 192 (196)
++|+++++++++++|+.+...+ .+++.+|++|||||+|||+
T Consensus 78 v~did~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 78 VDDVYAACERLEEMGVEVTKPPGDGGMKGIAFIKDPDGYWIELI 121 (121)
T ss_pred eCCHHHHHHHHHHCCCEEeeCCccCCCceEEEEECCCCCEEEeC
Confidence 9999999999999999997664 3467899999999999984
No 11
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.81 E-value=1.8e-18 Score=124.50 Aligned_cols=117 Identities=21% Similarity=0.373 Sum_probs=88.3
Q ss_pred eceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEE
Q 029285 73 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 152 (196)
Q Consensus 73 i~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v 152 (196)
+.+++|+.|.|.|++++++||+++|||++....+.. ...++..++..+++......... .....+.+..|++|.+
T Consensus 1 ~~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~hi~~~~ 75 (125)
T cd07253 1 IKRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV----GRKALRFGSQKINLHPVGGEFEP-AAGSPGPGSDDLCLIT 75 (125)
T ss_pred CcccceEEEEecCHHHHHHHHHHHhCceeecccccC----CceEEEeCCEEEEEecCCCccCc-CccCCCCCCceEEEEe
Confidence 357899999999999999999999999988654321 23456677777777764432211 1122345678999999
Q ss_pred CC-HHHHHHHHHHCCCeEEeeC-------CCceEEEEEcCCCCeEEEEee
Q 029285 153 RD-VSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQV 194 (196)
Q Consensus 153 ~d-l~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DPdG~~iEl~e~ 194 (196)
++ +++++++|+++|+++...+ .+++.+||+|||||.|||.++
T Consensus 76 ~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 125 (125)
T cd07253 76 EPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSNY 125 (125)
T ss_pred cccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeeeC
Confidence 84 9999999999999885432 125789999999999999874
No 12
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.81 E-value=4.6e-19 Score=128.71 Aligned_cols=119 Identities=20% Similarity=0.400 Sum_probs=88.4
Q ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCeEEEEEecCCCCCCCC--CCCCCCCceEEEEEE
Q 029285 75 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSG--RPEHGGRDRHTCIAI 152 (196)
Q Consensus 75 ~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~--~p~~~~~~~hi~f~v 152 (196)
+++|++|.|+|++++++||+++|||++....+........+++..++..++|........... ....+.+..|+||.|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~~i~~~v 80 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGNTKVELLEPLGEDSPIAKFLEKNGGGIHHIAIEV 80 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCCEEEEEEecCCCCChHHHHHhcCCCceEEEEEEc
Confidence 478999999999999999999999998764333333445677777878888876432211111 012245678999999
Q ss_pred CCHHHHHHHHHHCCCeEEee-C----CCceEEEE--EcCCCCeEEEEe
Q 029285 153 RDVSKLKMILDKAGISYTLS-K----SGRPAIFT--RDPDANALEFTQ 193 (196)
Q Consensus 153 ~dl~~~~~~l~~~G~~~~~~-~----~g~~~~~~--~DPdG~~iEl~e 193 (196)
+|+++++++|+++|+++..+ + .|.+.+|+ +||||+.||+.|
T Consensus 81 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 81 DDIEAALETLKEKGVRLIDEEPRIGAGGKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred CCHHHHHHHHHHCCCcccCCCCccCCCCCEEEEecccccCcEEEEecC
Confidence 99999999999999988643 2 23455666 799999999976
No 13
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.81 E-value=9.3e-19 Score=123.40 Aligned_cols=110 Identities=40% Similarity=0.745 Sum_probs=86.5
Q ss_pred eeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCe-EEEEEecCCCCCCCCCCCCCCCceEEEEEECC
Q 029285 76 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE-MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 154 (196)
Q Consensus 76 l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~-~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v~d 154 (196)
++|++|.|.|++++++||+++|||++..+.... ...+|+..++. .+++...+..... +..+++..|++|.|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~~~~i~l~~~~~~~~~---~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL---FPGAWLYAGDGPQLHLIEEDPPDAL---PEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC---CCceEEEeCCCcEEEEEecCCCccc---cCCCcccceEEEEeCC
Confidence 589999999999999999999999987543321 23477877765 7788765443221 2233466899999999
Q ss_pred HHHHHHHHHHCCCeEEeeC---CCceEEEEEcCCCCeEEE
Q 029285 155 VSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEF 191 (196)
Q Consensus 155 l~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdG~~iEl 191 (196)
+++++++++++|+++...+ .+.+.+++.||+||.|||
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARLKAAGVPYTESDVPGDGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHHHcCCCcccccCCCCCccEEEEECCCCCEEeC
Confidence 9999999999999986654 457889999999999996
No 14
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.81 E-value=1.2e-18 Score=131.12 Aligned_cols=120 Identities=23% Similarity=0.334 Sum_probs=86.6
Q ss_pred eeceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCe----EEEEEecCCCCCCCCCCCCCCCceE
Q 029285 72 GVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE----MIHLMELPNPDPLSGRPEHGGRDRH 147 (196)
Q Consensus 72 ~i~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~----~l~l~~~~~~~~~~~~p~~~~~~~h 147 (196)
..++++||.|.|.|+++|++||+++|||++..+.+.....+..+|+..++. .+++....... ....+.+..|
T Consensus 14 ~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~g~~h 89 (150)
T TIGR00068 14 KKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTE----KYDLGNGFGH 89 (150)
T ss_pred CCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCC----cccCCCceeE
Confidence 357899999999999999999999999998765543333334455554421 23332211111 1122346789
Q ss_pred EEEEECCHHHHHHHHHHCCCeEEeeC-----CCceEEEEEcCCCCeEEEEeec
Q 029285 148 TCIAIRDVSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQVD 195 (196)
Q Consensus 148 i~f~v~dl~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdG~~iEl~e~~ 195 (196)
++|.|+|+++++++|.++|+++..++ .+.+.+||+|||||.|||++..
T Consensus 90 i~f~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~ 142 (150)
T TIGR00068 90 IAIGVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRK 142 (150)
T ss_pred EEEecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECC
Confidence 99999999999999999999876543 2246789999999999999864
No 15
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.80 E-value=3.4e-18 Score=125.93 Aligned_cols=114 Identities=17% Similarity=0.289 Sum_probs=85.5
Q ss_pred eceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCC-ceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEE
Q 029285 73 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLP-YRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIA 151 (196)
Q Consensus 73 i~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~-~~~~~l~~g~~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~ 151 (196)
+.+++||+|.|+|++++++||+++|||++..+.+..... ....|+..++..+++.....+ ..++.+|++|.
T Consensus 2 i~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~--------~~~~~~Hiaf~ 73 (131)
T cd08364 2 IEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIGGLWIAIMEGDSL--------QERTYNHIAFK 73 (131)
T ss_pred cccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcCCeEEEEecCCCC--------CCCCceEEEEE
Confidence 568999999999999999999999999886653322111 112345566667776532221 12357899999
Q ss_pred EC--CHHHHHHHHHHCCCeEEeeC---C-CceEEEEEcCCCCeEEEEee
Q 029285 152 IR--DVSKLKMILDKAGISYTLSK---S-GRPAIFTRDPDANALEFTQV 194 (196)
Q Consensus 152 v~--dl~~~~~~l~~~G~~~~~~~---~-g~~~~~~~DPdG~~iEl~e~ 194 (196)
|+ ++++++++|+++|+++.... . +++.+||+|||||.|||.+.
T Consensus 74 v~~~~ld~~~~~l~~~gv~~~~~~~~~~~~g~~~yf~DPdG~~iEl~~~ 122 (131)
T cd08364 74 ISDSDVDEYTERIKALGVEMKPPRPRVQGEGRSIYFYDFDNHLFELHTG 122 (131)
T ss_pred cCHHHHHHHHHHHHHCCCEEecCCccccCCceEEEEECCCCCEEEEecC
Confidence 98 79999999999999886542 2 36899999999999999864
No 16
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.79 E-value=5.3e-18 Score=126.06 Aligned_cols=112 Identities=23% Similarity=0.374 Sum_probs=87.3
Q ss_pred eceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEE
Q 029285 73 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 152 (196)
Q Consensus 73 i~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v 152 (196)
+.+++|+.|.|+|++++++||+++|||++..+.+ ..+++..++..+.+...+... ......+..|++|.+
T Consensus 2 i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~g~~l~l~~~~~~~----~~~~~~~~~hiaf~v 71 (139)
T PRK04101 2 LKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLNGLWIALNEEKDIP----RNEIHQSYTHIAFSI 71 (139)
T ss_pred CCcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecCCeEEEeeccCCCC----CccCCCCeeEEEEEe
Confidence 5689999999999999999999999999875422 246777777777765432211 111234568999999
Q ss_pred C--CHHHHHHHHHHCCCeEEeeC----CCceEEEEEcCCCCeEEEEee
Q 029285 153 R--DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQV 194 (196)
Q Consensus 153 ~--dl~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~iEl~e~ 194 (196)
+ |+++++++|+++|+++...+ .+++.+|++|||||.|||.+-
T Consensus 72 ~~~dv~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~DPdGn~iEl~~~ 119 (139)
T PRK04101 72 EEEDFDHWYQRLKENDVNILPGRERDERDKKSIYFTDPDGHKFEFHTG 119 (139)
T ss_pred cHHHHHHHHHHHHHCCceEcCCccccCCCceEEEEECCCCCEEEEEeC
Confidence 8 99999999999999986432 357999999999999999864
No 17
>PRK10291 glyoxalase I; Provisional
Probab=99.79 E-value=2.3e-18 Score=126.17 Aligned_cols=112 Identities=22% Similarity=0.354 Sum_probs=82.4
Q ss_pred EEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCe----EEEEEecCCCCCCCCCCCCCCCceEEEEEECCH
Q 029285 80 GILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE----MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDV 155 (196)
Q Consensus 80 ~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~----~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v~dl 155 (196)
+|.|.|+++|++||+++|||++..+...+...+..+|+..++. .+++..... . .....+.+.+|+||.|+|+
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~---~~~~~g~~~~hlaf~V~d~ 76 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWG-V---DKYELGTAYGHIALSVDNA 76 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCC-C---CCCcCCCCeeEEEEEeCCH
Confidence 4789999999999999999998876555555556777765532 344432111 1 1122345788999999999
Q ss_pred HHHHHHHHHCCCeEEeeC----CC-ceEEEEEcCCCCeEEEEeec
Q 029285 156 SKLKMILDKAGISYTLSK----SG-RPAIFTRDPDANALEFTQVD 195 (196)
Q Consensus 156 ~~~~~~l~~~G~~~~~~~----~g-~~~~~~~DPdG~~iEl~e~~ 195 (196)
++++++|+++|+++..++ .+ .+.+|++|||||.|||.+..
T Consensus 77 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~ 121 (129)
T PRK10291 77 AEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEK 121 (129)
T ss_pred HHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEcc
Confidence 999999999999886432 33 35688999999999999853
No 18
>PLN02300 lactoylglutathione lyase
Probab=99.79 E-value=4.1e-18 Score=141.30 Aligned_cols=123 Identities=25% Similarity=0.335 Sum_probs=91.8
Q ss_pred CCceeceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCe----EEEEEecCCCCCCCCCCCCCCC
Q 029285 69 IDYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE----MIHLMELPNPDPLSGRPEHGGR 144 (196)
Q Consensus 69 ~~~~i~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~----~l~l~~~~~~~~~~~~p~~~~~ 144 (196)
.-+.+.+++|++|.|+|++++++||+++|||++..+...+...+..+|+..++. .+++...... .....+.+
T Consensus 18 ~~~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~----~~~~~~~g 93 (286)
T PLN02300 18 PKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYGV----DKYDIGTG 93 (286)
T ss_pred CccccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCCC----CccccCCC
Confidence 336789999999999999999999999999999875443344445677765432 3444322111 11223457
Q ss_pred ceEEEEEECCHHHHHHHHHHCCCeEEeeC----CC-ceEEEEEcCCCCeEEEEeec
Q 029285 145 DRHTCIAIRDVSKLKMILDKAGISYTLSK----SG-RPAIFTRDPDANALEFTQVD 195 (196)
Q Consensus 145 ~~hi~f~v~dl~~~~~~l~~~G~~~~~~~----~g-~~~~~~~DPdG~~iEl~e~~ 195 (196)
..|++|.|+|+++++++++++|+++...+ .+ .+.+|++|||||.|||++..
T Consensus 94 ~~hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~ 149 (286)
T PLN02300 94 FGHFGIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRG 149 (286)
T ss_pred ccEEEEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCC
Confidence 78999999999999999999999886543 22 46789999999999999864
No 19
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.78 E-value=7.6e-18 Score=128.15 Aligned_cols=113 Identities=19% Similarity=0.300 Sum_probs=85.1
Q ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeC---CeEEEEEecCCCCCCCCCCCCCCCceEEEEE
Q 029285 75 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG---AEMIHLMELPNPDPLSGRPEHGGRDRHTCIA 151 (196)
Q Consensus 75 ~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g---~~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~ 151 (196)
+++||+|.|+|+++|++||+++|||++..+.+ ....|+..+ +..++|+...... ...+ ..+++.|++|.
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~-----~~~~~~~~~~~~~~~l~l~~~~~~~--~~~~-~~~~l~Hiaf~ 72 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG-----DRVRLEEGGGGPGAVVDVLEEPDQP--RGRP-GAGTVHHVAFR 72 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC-----CEEEEEecCCCCCCEEEEEeCCCCC--CCcc-cCCceEEEEEE
Confidence 57999999999999999999999999986543 123455544 5677777643211 1111 22467899999
Q ss_pred ECC---HHHHHHHHHHCCCeEEeeC--CCceEEEEEcCCCCeEEEEeec
Q 029285 152 IRD---VSKLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFTQVD 195 (196)
Q Consensus 152 v~d---l~~~~~~l~~~G~~~~~~~--~g~~~~~~~DPdG~~iEl~e~~ 195 (196)
|+| +++++++|+++|+.+.... .+.+.+||+|||||.|||.+..
T Consensus 73 v~d~~dvd~~~~~L~~~Gv~~~~~~~~~~~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 73 VPDDEELEAWKERLEALGLPVSGIVDRFYFKSLYFREPGGILFEIATDG 121 (157)
T ss_pred CCCHHHHHHHHHHHHHCCCCcccccccccEEEEEEECCCCcEEEEEECC
Confidence 998 8999999999999765432 2357899999999999999865
No 20
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.78 E-value=4.7e-18 Score=125.26 Aligned_cols=110 Identities=23% Similarity=0.399 Sum_probs=85.4
Q ss_pred eeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEEC--
Q 029285 76 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR-- 153 (196)
Q Consensus 76 l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v~-- 153 (196)
++||.|.|+|++++++||+++|||++..+.+ ..+++..++..+.+...+... .....++.+|++|.++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~------~~~~~~~~~~~l~l~~~~~~~----~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE------KTAYFTIGGTWLALNEEPDIP----RNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC------ccceEeeCceEEEEEccCCCC----cCCcCccceEEEEEecHH
Confidence 5799999999999999999999999875322 135677777777776543211 1112346789999998
Q ss_pred CHHHHHHHHHHCCCeEEeeC----CCceEEEEEcCCCCeEEEEeec
Q 029285 154 DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQVD 195 (196)
Q Consensus 154 dl~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~iEl~e~~ 195 (196)
++++++++|+++|+.+..++ .+++.+||+|||||.|||.+.+
T Consensus 71 dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRKRDVRDRKSIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCccccCcceEEEEECCCCCEEEEecCc
Confidence 59999999999999876432 3578999999999999999865
No 21
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.77 E-value=3.3e-17 Score=118.46 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=85.2
Q ss_pred EEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEECCHHHH
Q 029285 79 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKL 158 (196)
Q Consensus 79 v~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v~dl~~~ 158 (196)
-.|.|+|++++++||+++||+++....+.+......+.+..++..+.+................++..|++|.|+|++++
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d~d~~ 82 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGDGGVMVGSVRDDYRASSARAGGAGTQGVYVVVDDVDAH 82 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECCEEEEEecCCCcccccccccCCCceEEEEEEECCHHHH
Confidence 46899999999999999999999876543332223455677776677765443221110112234557999999999999
Q ss_pred HHHHHHCCCeEEeeC----CCceEEEEEcCCCCeEEEEee
Q 029285 159 KMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQV 194 (196)
Q Consensus 159 ~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~iEl~e~ 194 (196)
++++.++|+++..++ +|.+.++++|||||.|+|.++
T Consensus 83 ~~~l~~~G~~v~~~~~~~~~g~~~~~~~DPdG~~~~l~~~ 122 (122)
T cd08355 83 YERARAAGAEILREPTDTPYGSREFTARDPEGNLWTFGTY 122 (122)
T ss_pred HHHHHHCCCEEeeCccccCCCcEEEEEECCCCCEEEEecC
Confidence 999999999887442 567889999999999999864
No 22
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.77 E-value=1.6e-17 Score=127.45 Aligned_cols=118 Identities=21% Similarity=0.343 Sum_probs=84.8
Q ss_pred ceeceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEE
Q 029285 71 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCI 150 (196)
Q Consensus 71 ~~i~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~p~~~~~~~hi~f 150 (196)
|.+.+++|++|.|+|++++++||+++|||++......+......+|+...+....+........ ..+++.|+||
T Consensus 2 ~~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~------~~~~~~hiaf 75 (166)
T cd09014 2 VGVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNKVHDVAYTRDPAG------ARGRLHHLAY 75 (166)
T ss_pred CCcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCCceeEEEecCCCC------CCCCceEEEE
Confidence 5688999999999999999999999999998765433322234578776543222322211110 1235789999
Q ss_pred EECCH---HHHHHHHHHCCCeEEeeC-----CCceEEEEEcCCCCeEEEEee
Q 029285 151 AIRDV---SKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQV 194 (196)
Q Consensus 151 ~v~dl---~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdG~~iEl~e~ 194 (196)
.|+|. ++++++|+++|+++...+ .....+|++|||||.|||.+.
T Consensus 76 ~v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 76 ALDTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred ECCCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 99855 477889999999985432 123568999999999999886
No 23
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.77 E-value=2.4e-17 Score=119.96 Aligned_cols=114 Identities=25% Similarity=0.346 Sum_probs=86.7
Q ss_pred eeeEEEEEcCCHHHHHHHHHhcc---CCEEeeecCCCCCCceeEEEEe-CCeEEEEEecCCCCCCCCCCCCCCCceEEEE
Q 029285 75 SVHHVGILCENLERSLEFYQNIL---GLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTCI 150 (196)
Q Consensus 75 ~l~hv~l~v~Dl~~a~~FY~~vL---G~~~~~~~~~~~~~~~~~~l~~-g~~~l~l~~~~~~~~~~~~p~~~~~~~hi~f 150 (196)
+++||+|.|+|++++++||+++| ||++..+.+. ...|... ++..+.|+........ .....+.+..|++|
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~~-----~~~~~~~~~~~~i~l~~~~~~~~~-~~~~~~~g~~hia~ 74 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWED-----GRSWRAGDGGTYLVLQQADGESAG-RHDRRNPGLHHLAF 74 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeecc-----CceEEecCCceEEEEEecccCCCc-ccccCCcCeeEEEE
Confidence 47999999999999999999999 9998875421 1245553 6678888766544321 11123456789999
Q ss_pred EEC---CHHHHHHHHHHCCCeEEeeC-------CCceEEEEEcCCCCeEEEEee
Q 029285 151 AIR---DVSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQV 194 (196)
Q Consensus 151 ~v~---dl~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DPdG~~iEl~e~ 194 (196)
.|+ |+++++++|+++|+++...+ .+.+.+|++|||||.+||..+
T Consensus 75 ~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 75 RAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred EcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 997 58899999999999986543 246899999999999999863
No 24
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.77 E-value=4.8e-18 Score=128.55 Aligned_cols=113 Identities=15% Similarity=0.153 Sum_probs=80.7
Q ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCC-CCCceeEEEEeCCe--EEEEEecCCCCCCCCCCCCCCCceEEEEE
Q 029285 75 SVHHVGILCENLERSLEFYQNILGLEINEARPHD-KLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHTCIA 151 (196)
Q Consensus 75 ~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~-~~~~~~~~l~~g~~--~l~l~~~~~~~~~~~~p~~~~~~~hi~f~ 151 (196)
+++||+|.|+|++++++||+++|||++..+...+ ......+|+..++. .+........ +..+++++|+||.
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~------~~~~~g~~Hiaf~ 74 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALA------QGPESGVHHAAFE 74 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHh------cCCCCceeEEEEE
Confidence 4789999999999999999999999987643322 12235677776431 1111000000 0113578999999
Q ss_pred ECCHHHHH---HHHHHCCCeEEeeCC----C-ceEEEEEcCCCCeEEEEe
Q 029285 152 IRDVSKLK---MILDKAGISYTLSKS----G-RPAIFTRDPDANALEFTQ 193 (196)
Q Consensus 152 v~dl~~~~---~~l~~~G~~~~~~~~----g-~~~~~~~DPdG~~iEl~e 193 (196)
|+|++++. ++|+++|+++.+.+. | ...+|++|||||.|||+.
T Consensus 75 v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~ 124 (153)
T cd07257 75 VHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYT 124 (153)
T ss_pred cCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEc
Confidence 99999986 999999999876531 2 456799999999999985
No 25
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.77 E-value=2.6e-17 Score=117.26 Aligned_cols=113 Identities=21% Similarity=0.303 Sum_probs=81.6
Q ss_pred EEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeC---CeEEEEEecCCCCCCCCCCCCCCCceEEEEEECC
Q 029285 78 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG---AEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 154 (196)
Q Consensus 78 hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g---~~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v~d 154 (196)
||+|.|.|++++++||+++|||++..+.+... ......+..+ +..+++.....+.. ..+...++..|++|.|+|
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~v~d 77 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPGSPETSLVLAPPANPAA--MSGLQPGGTPGLVLATDD 77 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCCCCeeEEEEeCCCCccc--cccccCCCceEEEEEehH
Confidence 89999999999999999999999987654211 1222223322 23455443333221 122234567799999999
Q ss_pred HHHHHHHHHHCCCeEEeeC---CCceEEEEEcCCCCeEEEEe
Q 029285 155 VSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQ 193 (196)
Q Consensus 155 l~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdG~~iEl~e 193 (196)
+++++++++++|+++...+ .+++.++++|||||.|||.|
T Consensus 78 i~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 78 IDATYEELKARGVEFSEEPREMPYGTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHHHHhCCCEEeeccccCCCceEEEEECCCCCEEEEeC
Confidence 9999999999999887654 34689999999999999975
No 26
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.77 E-value=3.4e-17 Score=116.85 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=83.0
Q ss_pred eeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCC-eEEEEEecCCCCCCCCCCCCCCCceEEEEEECC
Q 029285 76 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 154 (196)
Q Consensus 76 l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~-~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v~d 154 (196)
+.|++|+|+|++++++||+++||+++..... +. ...+++..++ ..+.++...... + ..+...|++|.++|
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~f~v~d 71 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GG--GDYAVFSTGGGAVGGLMKAPEPA-----A-GSPPGWLVYFAVDD 71 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CC--CceEEEEeCCccEEEEecCCCCC-----C-CCCCeEEEEEEeCC
Confidence 3699999999999999999999999876443 11 2335566664 455555544321 1 12355799999999
Q ss_pred HHHHHHHHHHCCCeEEeeC----CCceEEEEEcCCCCeEEEEe
Q 029285 155 VSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQ 193 (196)
Q Consensus 155 l~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~iEl~e 193 (196)
+++++++|.++|+++..++ .+++.++++|||||.|+|+|
T Consensus 72 i~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 72 VDAAAARVEAAGGKVLVPPTDIPGVGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHHHHHCCCEEEeCCcccCCcEEEEEEECCCCCEEEeEC
Confidence 9999999999999887553 35789999999999999986
No 27
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.77 E-value=2.4e-17 Score=119.33 Aligned_cols=108 Identities=16% Similarity=0.187 Sum_probs=80.1
Q ss_pred eceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCC--eEEEEEecCCCCCCCCCCCCCCCceEEEE
Q 029285 73 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA--EMIHLMELPNPDPLSGRPEHGGRDRHTCI 150 (196)
Q Consensus 73 i~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~--~~l~l~~~~~~~~~~~~p~~~~~~~hi~f 150 (196)
+.+++|+.|.|.|++++++||+++|||++....+. ..+|+...+ ....+..... ...+..|++|
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~---------~~~~~~hiaf 67 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDDQ-----GRVYLKAWDEFDHHSIVLREA---------DTAGLDFMGF 67 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecCC-----ceEEEEccCCCcccEEEeccC---------CCCCeeEEEE
Confidence 57899999999999999999999999998765321 135555421 1122221111 1235689999
Q ss_pred EEC---CHHHHHHHHHHCCCeEEeeC----C-CceEEEEEcCCCCeEEEEee
Q 029285 151 AIR---DVSKLKMILDKAGISYTLSK----S-GRPAIFTRDPDANALEFTQV 194 (196)
Q Consensus 151 ~v~---dl~~~~~~l~~~G~~~~~~~----~-g~~~~~~~DPdG~~iEl~e~ 194 (196)
.|+ ++++++++|+++|+++...+ . .++.+||+|||||.|||.+.
T Consensus 68 ~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 119 (122)
T cd07265 68 KVLDDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYAD 119 (122)
T ss_pred EeCCHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEe
Confidence 997 88899999999999986532 2 25789999999999999875
No 28
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.77 E-value=4.6e-17 Score=117.88 Aligned_cols=112 Identities=29% Similarity=0.381 Sum_probs=84.4
Q ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCC--eEEEEEecCCCCCCCCCCCCCCCceEEEEE
Q 029285 74 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA--EMIHLMELPNPDPLSGRPEHGGRDRHTCIA 151 (196)
Q Consensus 74 ~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~--~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~ 151 (196)
++++||.|.|.|++++++||+++|||++....+ ..+++..++ ..+.|...+... ..+....+..|++|.
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~l~~~~~~~~l~l~~~~~~~---~~~~~~~~~~hi~f~ 71 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERTD------STAVLGTGGKRPLLVLEEDPDAP---PAPPGATGLYHFAIL 71 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcCC------CEEEEecCCCeEEEEEEeCCCCC---cccCCCCcEEEEEEE
Confidence 478999999999999999999999999987522 246676665 355555443221 112233467899999
Q ss_pred EC---CHHHHHHHHHHCCCeEEeeCC--CceEEEEEcCCCCeEEEEee
Q 029285 152 IR---DVSKLKMILDKAGISYTLSKS--GRPAIFTRDPDANALEFTQV 194 (196)
Q Consensus 152 v~---dl~~~~~~l~~~G~~~~~~~~--g~~~~~~~DPdG~~iEl~e~ 194 (196)
|+ ++++++++|+++|+++..... ..+.+|++|||||.+||.+.
T Consensus 72 v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~~~~DPdG~~iEi~~~ 119 (125)
T cd07255 72 LPSRADLAAALRRLIELGIPLVGASDHLVSEALYLSDPEGNGIEIYAD 119 (125)
T ss_pred CCCHHHHHHHHHHHHHcCCceeccccccceeEEEEECCCCCEEEEEEe
Confidence 98 588999999999998764432 24789999999999999875
No 29
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.77 E-value=2.6e-17 Score=119.15 Aligned_cols=106 Identities=18% Similarity=0.225 Sum_probs=80.5
Q ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEEC-
Q 029285 75 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR- 153 (196)
Q Consensus 75 ~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v~- 153 (196)
++.||+|.|+|+++|++||+++|||++..+.+. ..+|+..++..+.+...+.. ..+..|++|.++
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~---------~~~~~~~~f~v~~ 67 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRPED-----GALYLRMDDRAWRIAVHPGE---------ADDLAYAGWEVAD 67 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCCCC-----CeEEEEccCCceEEEEEeCC---------CCceeEEEEEECC
Confidence 689999999999999999999999998654221 24677766544444332211 135679999997
Q ss_pred --CHHHHHHHHHHCCCeEEeeC-------CCceEEEEEcCCCCeEEEEee
Q 029285 154 --DVSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQV 194 (196)
Q Consensus 154 --dl~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DPdG~~iEl~e~ 194 (196)
|+++++++|+++|+++...+ .+++.+||+|||||.|||..-
T Consensus 68 ~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 117 (120)
T cd07252 68 EAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWG 117 (120)
T ss_pred HHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEec
Confidence 58888999999999987532 224789999999999999864
No 30
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.76 E-value=1.7e-17 Score=119.65 Aligned_cols=116 Identities=21% Similarity=0.406 Sum_probs=84.7
Q ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCC-CceeEEEEe----CCeEEEEEecCCCCCCCCCCCCCCCceEEE
Q 029285 75 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKL-PYRGAWLWV----GAEMIHLMELPNPDPLSGRPEHGGRDRHTC 149 (196)
Q Consensus 75 ~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~-~~~~~~l~~----g~~~l~l~~~~~~~~~~~~p~~~~~~~hi~ 149 (196)
+++||+|.|.|++++++||+++|||++..+.+.... .....++.. ++..++|+..+..... .+...++..|++
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~--~~~~~~~~~hi~ 78 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPK--GRRGPGQIHHIA 78 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCC--CCCCCCcEEEEE
Confidence 478999999999999999999999998876543221 122333433 3457778766443211 112234578999
Q ss_pred EEEC---CHHHHHHHHHHCCCeEEee--CCCceEEEEEcCCCCeEEEE
Q 029285 150 IAIR---DVSKLKMILDKAGISYTLS--KSGRPAIFTRDPDANALEFT 192 (196)
Q Consensus 150 f~v~---dl~~~~~~l~~~G~~~~~~--~~g~~~~~~~DPdG~~iEl~ 192 (196)
|.|+ ++++++++++++|+++... ..+++.+|++|||||.|||.
T Consensus 79 f~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 79 FSVPSEASLDAWRERLRAAGVPVSGVVDHFGERSIYFEDPDGLRLELT 126 (126)
T ss_pred EEcCCHHHHHHHHHHHHHcCCcccceEeecceEEEEEECCCCCEEEeC
Confidence 9999 5799999999999987543 24678999999999999984
No 31
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.76 E-value=2.5e-17 Score=118.97 Aligned_cols=114 Identities=14% Similarity=0.144 Sum_probs=77.3
Q ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEEC
Q 029285 74 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR 153 (196)
Q Consensus 74 ~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v~ 153 (196)
+++.|+.|.|+|+++|++||+++|||++....+ . ...+ .++..+++...............+++..|++|.|+
T Consensus 1 ~~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~--~----~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~v~ 73 (120)
T cd09011 1 MKFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG--E----NVTF-EGGFALQEGYSWLEGISKADIIEKSNNFELYFEEE 73 (120)
T ss_pred CEEEEEEEEECCHHHHHHHHHHhcCCEEeeccC--c----eEEE-eccceeccchhhhccCCcccccccCCceEEEEEeh
Confidence 368899999999999999999999999864321 1 1112 12222222211100000111112345579999999
Q ss_pred CHHHHHHHHHHCCC-eEEee----CCCceEEEEEcCCCCeEEEEee
Q 029285 154 DVSKLKMILDKAGI-SYTLS----KSGRPAIFTRDPDANALEFTQV 194 (196)
Q Consensus 154 dl~~~~~~l~~~G~-~~~~~----~~g~~~~~~~DPdG~~iEl~e~ 194 (196)
|+++++++|+++|+ ++..+ ++|.+.++|+|||||.|||.+.
T Consensus 74 dvd~~~~~l~~~g~~~~~~~~~~~~~g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 74 DFDAFLDKLKRYDNIEYVHPIKEHPWGQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred hhHHHHHHHHhcCCcEEecCcccCCCccEEEEEECCCCCEEEEecc
Confidence 99999999999985 56433 3567899999999999999874
No 32
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.76 E-value=3.7e-17 Score=119.24 Aligned_cols=108 Identities=19% Similarity=0.285 Sum_probs=81.7
Q ss_pred eeceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEE
Q 029285 72 GVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIA 151 (196)
Q Consensus 72 ~i~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~ 151 (196)
++.++.||.|.|+|++++.+||+++|||++..+.+ ..+|+..++....+...... .+..|++|.
T Consensus 3 ~~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~------~~~~l~~~~~~~~i~l~~~~----------~~~~~iaf~ 66 (124)
T cd08361 3 ELQDIAYVRLGTRDLAGATRFATDILGLQVAERTA------KATYFRSDARDHTLVYIEGD----------PAEQASGFE 66 (124)
T ss_pred eEEEeeEEEEeeCCHHHHHHHHHhccCceeccCCC------CeEEEEcCCccEEEEEEeCC----------CceEEEEEE
Confidence 46789999999999999999999999999875421 24778776432222221111 134789999
Q ss_pred ECC---HHHHHHHHHHCCCeEEeeC-------CCceEEEEEcCCCCeEEEEeec
Q 029285 152 IRD---VSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQVD 195 (196)
Q Consensus 152 v~d---l~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DPdG~~iEl~e~~ 195 (196)
|++ +++++++|+++|+++...+ .+.+.+||+|||||.|||+..+
T Consensus 67 v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 67 LRDDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred ECCHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 985 9999999999999886542 2356789999999999998764
No 33
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.76 E-value=2.1e-18 Score=124.35 Aligned_cols=117 Identities=26% Similarity=0.447 Sum_probs=84.3
Q ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEeeecC--CCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCC-CCCCceEEEEE
Q 029285 75 SVHHVGILCENLERSLEFYQNILGLEINEARP--HDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPE-HGGRDRHTCIA 151 (196)
Q Consensus 75 ~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~--~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~p~-~~~~~~hi~f~ 151 (196)
+++||+|.|+|++++++||+++|||++..... .........++..++..++++....+........ ......|+++.
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 80 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEGHIELFLNPSPPPRASGHSFPEHGGHHIAFL 80 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSSCEEEEEEESSSSSSEEEHHHSHTSEEEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccccceeeeeeccccccccccccccccceeEEEE
Confidence 68999999999999999999999999998766 2222334566777777788876654432211110 00134577777
Q ss_pred EC---CHHHHHHHHHHCCCeEEeeC----CC-ceEEEEEcCCCCeEEE
Q 029285 152 IR---DVSKLKMILDKAGISYTLSK----SG-RPAIFTRDPDANALEF 191 (196)
Q Consensus 152 v~---dl~~~~~~l~~~G~~~~~~~----~g-~~~~~~~DPdG~~iEl 191 (196)
+. |+++++++|++.|+++..++ .+ ...+|++|||||.|||
T Consensus 81 ~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 81 AFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp ESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred eccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 66 77788999999999987664 23 4446799999999997
No 34
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.76 E-value=3.3e-17 Score=118.49 Aligned_cols=111 Identities=20% Similarity=0.285 Sum_probs=82.3
Q ss_pred ceeceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCe-EEEEEecCCCCCCCCCCCCCCCceEEE
Q 029285 71 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE-MIHLMELPNPDPLSGRPEHGGRDRHTC 149 (196)
Q Consensus 71 ~~i~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~-~l~l~~~~~~~~~~~~p~~~~~~~hi~ 149 (196)
|.+.+++|+.|.|+|++++++||+++|||++..+.+ ..+|+..++. ..+.+..... ...+..|++
T Consensus 2 ~~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~------~~~~l~~~~~~~~~~~~l~~~--------~~~~~~h~a 67 (121)
T cd09013 2 FDIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG------QSVYLRAWGDYEHHSLKLTES--------PEAGLGHIA 67 (121)
T ss_pred CCccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC------CeEEEEeccCCCccEEEEeeC--------CCCceEEEE
Confidence 457899999999999999999999999999887532 2356655331 1111111111 123678999
Q ss_pred EEEC---CHHHHHHHHHHCCCeEEee---CCCceEEEEEcCCCCeEEEEeec
Q 029285 150 IAIR---DVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFTQVD 195 (196)
Q Consensus 150 f~v~---dl~~~~~~l~~~G~~~~~~---~~g~~~~~~~DPdG~~iEl~e~~ 195 (196)
|.|+ ++++++++++++|+++... +..+..+|++|||||.|||+...
T Consensus 68 f~v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 119 (121)
T cd09013 68 WRASSPEALERRVAALEASGLGIGWIEGDPGHGKAYRFRSPDGHPMELYWEV 119 (121)
T ss_pred EEcCCHHHHHHHHHHHHHcCCccccccCCCCCcceEEEECCCCCEEEEEEec
Confidence 9997 6788899999999987532 24467899999999999998754
No 35
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.76 E-value=4.4e-17 Score=116.76 Aligned_cols=106 Identities=15% Similarity=0.181 Sum_probs=80.9
Q ss_pred eceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEE
Q 029285 73 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 152 (196)
Q Consensus 73 i~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v 152 (196)
+.+++|+.|.|+|+++|++||++ |||++..+.+ ..+|+..++....++...... .++..|++|.|
T Consensus 1 ~~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~af~v 65 (113)
T cd07267 1 LTDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD------DELYYRGYGTDPFVYVARKGE--------KARFVGAAFEA 65 (113)
T ss_pred CcEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC------CeEEEecCCCccEEEEcccCC--------cCcccEEEEEE
Confidence 46899999999999999999999 9999875432 246776654333333222111 13667999999
Q ss_pred CCHHHHHHHHHHCCCeEEee---CCCceEEEEEcCCCCeEEEEe
Q 029285 153 RDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFTQ 193 (196)
Q Consensus 153 ~dl~~~~~~l~~~G~~~~~~---~~g~~~~~~~DPdG~~iEl~e 193 (196)
+|.+++.+.+++.|+.+... +.+++.++|+|||||.|||+.
T Consensus 66 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~ 109 (113)
T cd07267 66 ASRADLEKAAALPGASVIDDLEAPGGGKRVTLTDPDGFPVELVY 109 (113)
T ss_pred CCHHHHHHHHHcCCCeeecCCCCCCCceEEEEECCCCCEEEEEe
Confidence 99999999999999977543 456789999999999999975
No 36
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.76 E-value=4.8e-17 Score=117.67 Aligned_cols=115 Identities=18% Similarity=0.218 Sum_probs=80.9
Q ss_pred eeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCeEEEEEecCCC--CCC----CCCCCCCCCceEEE
Q 029285 76 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNP--DPL----SGRPEHGGRDRHTC 149 (196)
Q Consensus 76 l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~--~~~----~~~p~~~~~~~hi~ 149 (196)
+.|+.|+|+|++++.+||+++|||++....+.+. + ..+..++..+.+...... ... +..+...++..|++
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHESGD--Y--GELETGETTLAFASHDLAESNLKGGFVKADPAQPPAGFEIA 76 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecCCCc--E--EEecCCcEEEEEEcccccccccccCccCCccccCCCcEEEE
Confidence 4699999999999999999999999875433211 1 223345555555543211 000 01122223346999
Q ss_pred EEECCHHHHHHHHHHCCCeEEee----CCCceEEEEEcCCCCeEEEEee
Q 029285 150 IAIRDVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 194 (196)
Q Consensus 150 f~v~dl~~~~~~l~~~G~~~~~~----~~g~~~~~~~DPdG~~iEl~e~ 194 (196)
|.|+|+++++++++++|+++..+ +.|.+.++++|||||.|||.++
T Consensus 77 ~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 77 FVTDDVAAAFARAVEAGAVLVSEPKEKPWGQTVAYVRDINGFLIELCSP 125 (125)
T ss_pred EEcCCHHHHHHHHHHcCCEeccCCccCCCCcEEEEEECCCCCEEEEecC
Confidence 99999999999999999988544 3566889999999999999874
No 37
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.75 E-value=2.8e-17 Score=118.96 Aligned_cols=118 Identities=22% Similarity=0.354 Sum_probs=88.4
Q ss_pred eeEEEEEcCCHHHHHHHHHhccCCEEeeecCCC-CCCceeEEEEeCCeEEEEEecCCCCCCCC--CCCCCCCceEEEEEE
Q 029285 76 VHHVGILCENLERSLEFYQNILGLEINEARPHD-KLPYRGAWLWVGAEMIHLMELPNPDPLSG--RPEHGGRDRHTCIAI 152 (196)
Q Consensus 76 l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~-~~~~~~~~l~~g~~~l~l~~~~~~~~~~~--~p~~~~~~~hi~f~v 152 (196)
++||.|+|.|++++.+||+++|||+.....+.. ......+|+..++..++|+.......... ....+.+..|++|.|
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~~f~v 80 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLGNVQIELIEPLDDDSPIAKFLEKRGEGLHHIAFEV 80 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcCCEEEEEEEECCCCCcHHHHHhcCCCceEEEEEEe
Confidence 479999999999999999999999998755432 22345678888888888887543322111 112456778999999
Q ss_pred CCHHHHHHHHHHCCCeEEeeC----CCceEEEEEcCC---CCeEEEEe
Q 029285 153 RDVSKLKMILDKAGISYTLSK----SGRPAIFTRDPD---ANALEFTQ 193 (196)
Q Consensus 153 ~dl~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPd---G~~iEl~e 193 (196)
+|+++++++++++|+++..++ .+++.+++.||+ |+.|||+|
T Consensus 81 ~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 81 DDIDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred CCHHHHHHHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 999999999999999987654 234555555555 99999975
No 38
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.75 E-value=6.1e-17 Score=119.55 Aligned_cols=106 Identities=20% Similarity=0.342 Sum_probs=80.6
Q ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCC----eEEEEEecCCCCCCCCCCCCCCCceEEE
Q 029285 74 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA----EMIHLMELPNPDPLSGRPEHGGRDRHTC 149 (196)
Q Consensus 74 ~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~----~~l~l~~~~~~~~~~~~p~~~~~~~hi~ 149 (196)
.+++||+|.|.|+++|++||+++|||++..+.+ ...+|+..++ ..+.+...+. ...+++|++
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~-----~~~~~~~~~~~~~~~~i~l~~~~~---------~~~g~~hia 67 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK-----GRGAFLRAAGGGDHHNLFLIKTPA---------PMAGFHHAA 67 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec-----CcEEEEECCCCCCCcEEEEecCCC---------CCCcceEEE
Confidence 478999999999999999999999999876532 1356777652 2344433221 135788999
Q ss_pred EEECCHHHHH---HHHHHCCCeEEeeC-----CCceEEEEEcCCCCeEEEEe
Q 029285 150 IAIRDVSKLK---MILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQ 193 (196)
Q Consensus 150 f~v~dl~~~~---~~l~~~G~~~~~~~-----~g~~~~~~~DPdG~~iEl~e 193 (196)
|.|+|++++. ++|+++|+++...+ .+.+.+|++||+||.|||..
T Consensus 68 f~v~d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~ 119 (134)
T cd08360 68 FEVGDIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGA 119 (134)
T ss_pred EEeCCHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEc
Confidence 9999888776 59999999876533 23467899999999999985
No 39
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.75 E-value=1.4e-16 Score=114.49 Aligned_cols=113 Identities=19% Similarity=0.175 Sum_probs=84.8
Q ss_pred EEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEECCHHHH
Q 029285 79 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKL 158 (196)
Q Consensus 79 v~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v~dl~~~ 158 (196)
+.|+|+|++++.+||+++||+++......+......+.+..++..+.+........ ......++..|++|.|+|++++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~v~d~~~~ 82 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGDSVLMLADEFPEHG--SPASWGGTPVSLHLYVEDVDAT 82 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECCEEEEEecCCcccC--CCCCCCCceEEEEEEeCCHHHH
Confidence 46899999999999999999999876543333333455677777777765322111 1111234567999999999999
Q ss_pred HHHHHHCCCeEEee----CCCceEEEEEcCCCCeEEEEe
Q 029285 159 KMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 193 (196)
Q Consensus 159 ~~~l~~~G~~~~~~----~~g~~~~~~~DPdG~~iEl~e 193 (196)
++++.+.|+++..+ ++|.+.++++|||||.|+|.|
T Consensus 83 ~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 83 FARAVAAGATSVMPPADQFWGDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred HHHHHHCCCeEecCcccccccceEEEEECCCCCEEEEec
Confidence 99999999988644 356789999999999999986
No 40
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.75 E-value=6.8e-17 Score=117.38 Aligned_cols=106 Identities=21% Similarity=0.306 Sum_probs=80.3
Q ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeC-CeEEEEEecCCCCCCCCCCCCCCCceEEEEEE
Q 029285 74 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-AEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 152 (196)
Q Consensus 74 ~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g-~~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v 152 (196)
.+++|+.|.|+|+++|++||+++|||++..... ..+++..+ +..+.+..... ..+..|++|.+
T Consensus 3 ~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~~~l~~~~~~~----------~~~~~h~a~~v 66 (123)
T cd08351 3 VTLNHTIVPARDREASAEFYAEILGLPWAKPFG------PFAVVKLDNGVSLDFAQPDG----------EIPPQHYAFLV 66 (123)
T ss_pred ceEeEEEEEcCCHHHHHHHHHHhcCCEeeeccC------CEEEEEcCCCcEEEEecCCC----------CCCcceEEEEe
Confidence 578999999999999999999999999875221 12334443 33555543211 12347999988
Q ss_pred C--CHHHHHHHHHHCCCeEEee-----------CCCceEEEEEcCCCCeEEEEeec
Q 029285 153 R--DVSKLKMILDKAGISYTLS-----------KSGRPAIFTRDPDANALEFTQVD 195 (196)
Q Consensus 153 ~--dl~~~~~~l~~~G~~~~~~-----------~~g~~~~~~~DPdG~~iEl~e~~ 195 (196)
+ |+++++++|+++|+++... ..|++.+||+|||||.|||.+.|
T Consensus 67 ~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 122 (123)
T cd08351 67 SEEEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITRP 122 (123)
T ss_pred CHHHHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEecc
Confidence 7 6999999999999987432 24679999999999999999875
No 41
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.75 E-value=1.2e-16 Score=117.39 Aligned_cols=113 Identities=25% Similarity=0.363 Sum_probs=84.1
Q ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeC---CeEEEEEecCCCCCCCCCCCCCCCceEEEEE
Q 029285 75 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG---AEMIHLMELPNPDPLSGRPEHGGRDRHTCIA 151 (196)
Q Consensus 75 ~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g---~~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~ 151 (196)
+++|+.|.|+|++++++||+++|||++....+. ....|+..+ +..+.++....... +....+..|++|.
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~----~~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~~~~h~~f~ 72 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL----GGLVFLSRDPDEHHQIALITGRPAAP----PPGPAGLNHIAFE 72 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC----CcEEEEEecCCCceEEEEEecCCCCC----CCCCCCceEEEEE
Confidence 478999999999999999999999998765432 134566655 23566665433211 1223467899999
Q ss_pred ECCHH---HHHHHHHHCCCeEEeeC--CCceEEEEEcCCCCeEEEEeec
Q 029285 152 IRDVS---KLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFTQVD 195 (196)
Q Consensus 152 v~dl~---~~~~~l~~~G~~~~~~~--~g~~~~~~~DPdG~~iEl~e~~ 195 (196)
|++++ +++++|.+.|+++.... .+++.++++|||||.|||.+..
T Consensus 73 v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 121 (134)
T cd08348 73 VDSLDDLRDLYERLRAAGITPVWPVDHGNAWSIYFRDPDGNRLELFVDT 121 (134)
T ss_pred eCCHHHHHHHHHHHHHCCCCccccCCCCceeEEEEECCCCCEEEEEEcC
Confidence 99765 57899999999876543 3468899999999999999753
No 42
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.75 E-value=4.4e-17 Score=118.03 Aligned_cols=106 Identities=26% Similarity=0.427 Sum_probs=82.0
Q ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEEC-
Q 029285 75 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR- 153 (196)
Q Consensus 75 ~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v~- 153 (196)
+++|+.|.|+|++++++||+++|||++....+ ..+|+..++..+.+...+... ..++..|++|.++
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~-------~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD------KGAYLEAGDLWLCLSVDANVG-------PAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC------CceEEecCCEEEEEecCCCCC-------CCCCeeeEEEEeCH
Confidence 47899999999999999999999999876543 135677777655554322110 1245679999984
Q ss_pred -CHHHHHHHHHHCCCeEEeeC-CCceEEEEEcCCCCeEEEEe
Q 029285 154 -DVSKLKMILDKAGISYTLSK-SGRPAIFTRDPDANALEFTQ 193 (196)
Q Consensus 154 -dl~~~~~~l~~~G~~~~~~~-~g~~~~~~~DPdG~~iEl~e 193 (196)
|+++++++++++|+++...+ ..++.+||+|||||.|||+.
T Consensus 68 ~dl~~~~~~l~~~G~~~~~~~~~~~~~~~f~DPdG~~ie~~~ 109 (121)
T cd07244 68 EDFASLKEKLRQAGVKEWKENTSEGDSFYFLDPDGHKLELHV 109 (121)
T ss_pred HHHHHHHHHHHHcCCcccCCCCCCccEEEEECCCCCEEEEEe
Confidence 89999999999999886543 33678999999999999986
No 43
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.74 E-value=7.7e-17 Score=118.39 Aligned_cols=110 Identities=15% Similarity=0.180 Sum_probs=77.6
Q ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCC-----------CCceeEEEEeC----CeEEEEEecCCCCCCCCCC
Q 029285 75 SVHHVGILCENLERSLEFYQNILGLEINEARPHDK-----------LPYRGAWLWVG----AEMIHLMELPNPDPLSGRP 139 (196)
Q Consensus 75 ~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~-----------~~~~~~~l~~g----~~~l~l~~~~~~~~~~~~p 139 (196)
++.|++|+|.|+++|++||+++|||++..+.+.++ ......++..+ +..++|.......+ +
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~----~ 77 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGD----Y 77 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCC----C
Confidence 67899999999999999999999999877654443 11112334432 23666665332211 1
Q ss_pred CCCCCceEEEEEECCHHHHHHHHHHCCCeEEeeCCCceEEEEEcCCCCeEEEEe
Q 029285 140 EHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQ 193 (196)
Q Consensus 140 ~~~~~~~hi~f~v~dl~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~iEl~e 193 (196)
..+.+ |++|.|++. ++.++|+++|+++...+.+ .+|++||||+.|||..
T Consensus 78 ~~g~~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~~--~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 78 ELGND--FLGITIHSK-QAVSNAKKHNWPVTEVEDG--VYEVKAPGGYKFYLID 126 (127)
T ss_pred CCCCC--EEEEEEECH-HHHHHHHHCCCceecCCCC--EEEEECCCCCEEEEec
Confidence 22333 677777766 5669999999999876654 8999999999999963
No 44
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.74 E-value=8.8e-17 Score=122.63 Aligned_cols=112 Identities=21% Similarity=0.324 Sum_probs=78.4
Q ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEEC
Q 029285 74 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR 153 (196)
Q Consensus 74 ~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v~ 153 (196)
++++||+|.|+|++++++||+++|||++......+.......|+..++....+..... .+.+..|++|.|+
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~~~~i~l~~~---------~~~~~~Hiaf~v~ 72 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGGVHDTALTGG---------NGPRLHHVAFWVP 72 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCCcceEEEecC---------CCCceeEEEEEcC
Confidence 5789999999999999999999999998754332222233466655433222211111 1236789999998
Q ss_pred C---HHHHHHHHHHCCCeE--EeeC-----CCceEEEEEcCCCCeEEEEee
Q 029285 154 D---VSKLKMILDKAGISY--TLSK-----SGRPAIFTRDPDANALEFTQV 194 (196)
Q Consensus 154 d---l~~~~~~l~~~G~~~--~~~~-----~g~~~~~~~DPdG~~iEl~e~ 194 (196)
+ +++++++|+++|+.. ...+ .+.+.+|++|||||.|||++.
T Consensus 73 ~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~ 123 (161)
T cd07256 73 EPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTG 123 (161)
T ss_pred CHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeec
Confidence 5 677788999999863 2221 234679999999999999864
No 45
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.74 E-value=6.7e-17 Score=122.42 Aligned_cols=112 Identities=17% Similarity=0.283 Sum_probs=82.9
Q ss_pred eceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCC---CCCceeEEEEeCCe--EEEEEecCCCCCCCCCCCCCCCceE
Q 029285 73 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHD---KLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRH 147 (196)
Q Consensus 73 i~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~---~~~~~~~~l~~g~~--~l~l~~~~~~~~~~~~p~~~~~~~h 147 (196)
.++++||+|.|+|++++++||+++|||++....... ......+|+..++. .+.+..... +++..|
T Consensus 7 ~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~----------~~g~~H 76 (154)
T cd07237 7 DQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAEGPG----------PKRIHH 76 (154)
T ss_pred CCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEcCCC----------CceeEE
Confidence 367999999999999999999999999987643221 11234567776542 233322211 246889
Q ss_pred EEEEECCHH---HHHHHHHHCCCeEEeeC-----CCceEEEEEcCCCCeEEEEee
Q 029285 148 TCIAIRDVS---KLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQV 194 (196)
Q Consensus 148 i~f~v~dl~---~~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdG~~iEl~e~ 194 (196)
++|.|+|++ +++++|+++|+++...+ .+.+.+|++|||||.|||...
T Consensus 77 iaf~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~ 131 (154)
T cd07237 77 LMLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWG 131 (154)
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccC
Confidence 999998665 57999999999986543 246889999999999999764
No 46
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.74 E-value=8.3e-17 Score=115.74 Aligned_cols=108 Identities=21% Similarity=0.311 Sum_probs=81.4
Q ss_pred eceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEE
Q 029285 73 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 152 (196)
Q Consensus 73 i~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v 152 (196)
+.+++|+.|.|+|++++++||+++|||++....+ ..+|+..++...+++...... ..+..|++|.+
T Consensus 1 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~v 66 (120)
T cd08362 1 VTALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD------GIVYLRATGSEHHILRLRRSD--------RNRLDVVSFSV 66 (120)
T ss_pred CceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC------CEEEEECCCCccEEEEeccCC--------CCCCceEEEEe
Confidence 3589999999999999999999999999875432 235676554333333322111 12457999999
Q ss_pred C---CHHHHHHHHHHCCCeEEeeC------CCceEEEEEcCCCCeEEEEee
Q 029285 153 R---DVSKLKMILDKAGISYTLSK------SGRPAIFTRDPDANALEFTQV 194 (196)
Q Consensus 153 ~---dl~~~~~~l~~~G~~~~~~~------~g~~~~~~~DPdG~~iEl~e~ 194 (196)
+ ++++++++++++|+++..++ .+++.++++||+||.|||.+.
T Consensus 67 ~~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~ 117 (120)
T cd08362 67 ASRADVDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSAD 117 (120)
T ss_pred CCHHHHHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEec
Confidence 4 78999999999999986542 356889999999999999874
No 47
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.74 E-value=1.3e-16 Score=114.03 Aligned_cols=106 Identities=21% Similarity=0.294 Sum_probs=83.0
Q ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeC-CeEEEEEecCCCCCCCCCCCCCCCceEEEEEE
Q 029285 74 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-AEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 152 (196)
Q Consensus 74 ~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g-~~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v 152 (196)
++++|+.|.|+|++++++||+++|||++....+ ..+|+..+ +..+.+.....+ ..+..|++|.|
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~---------~~~~~h~~~~v 65 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA------GSVYLRCSEDDHHSLVLTEGD---------EPGVDALGFEV 65 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC------CeEEEecCCCCcEEEEEEeCC---------CCCceeEEEEc
Confidence 468999999999999999999999999987542 24778776 344444322211 13568999999
Q ss_pred C---CHHHHHHHHHHCCCeEEeeC----CCceEEEEEcCCCCeEEEEee
Q 029285 153 R---DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQV 194 (196)
Q Consensus 153 ~---dl~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~iEl~e~ 194 (196)
+ ++++++++++++|+++...+ .+++.+++.||+||.+|+...
T Consensus 66 ~~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 66 ASEEDLEALAAHLEAAGVAPEEASDPEPGVGRGLRFQDPDGHLLELFVE 114 (117)
T ss_pred CCHHHHHHHHHHHHHcCCceEEcCccCCCCceEEEEECCCCCEEEEEEc
Confidence 8 68889999999999986643 356899999999999999864
No 48
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.73 E-value=9.4e-17 Score=114.26 Aligned_cols=105 Identities=23% Similarity=0.399 Sum_probs=80.7
Q ss_pred EEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEEC--CH
Q 029285 78 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR--DV 155 (196)
Q Consensus 78 hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v~--dl 155 (196)
||.|.|+|++++++||+++|||++..+.+ ..+|+..++..+.+...+... ...++..|++|.|+ ++
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~------~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS------KEAYFELAGLWICLMEEDSLQ------GPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC------ceeEEEecCeEEEeccCCCcC------CCCCCccEEEEEcCHHHH
Confidence 89999999999999999999999876432 235666666666655433211 12245679999995 89
Q ss_pred HHHHHHHHHCCCeEEeeC----CCceEEEEEcCCCCeEEEEee
Q 029285 156 SKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQV 194 (196)
Q Consensus 156 ~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~iEl~e~ 194 (196)
+++++++.++|+++.... .+++.+|++|||||.|||..-
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 69 DEYTERLKALGVEMKPERPRVQGEGRSIYFYDPDGHLLELHAG 111 (113)
T ss_pred HHHHHHHHHcCCccCCCccccCCCceEEEEECCCCCEEEEEeC
Confidence 999999999999986431 257899999999999999864
No 49
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.73 E-value=2.6e-16 Score=113.04 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=78.2
Q ss_pred EEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCe--EEEEEecCCCCCC-CCCCCCCCCceEEEEEECC
Q 029285 78 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE--MIHLMELPNPDPL-SGRPEHGGRDRHTCIAIRD 154 (196)
Q Consensus 78 hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~--~l~l~~~~~~~~~-~~~p~~~~~~~hi~f~v~d 154 (196)
++.|.|+|++++++||+++|||++....+ ..+.+..++. .+.+......... ...+..+.+ .|++|.|+|
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~-~~~~~~v~d 76 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDSD------WYVSLRSPDGGVELAFMLPGHETVPAAQYQFQGQG-LILNFEVDD 76 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEeccC------cEEEEecCCCceEEEEccCCCCCCcchhcccCCce-EEEEEEECC
Confidence 67899999999999999999999886421 1233444443 4444433222111 011222333 499999999
Q ss_pred HHHHHHHHHHCCCeEEeeC----CCceEEEEEcCCCCeEEEEe
Q 029285 155 VSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQ 193 (196)
Q Consensus 155 l~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~iEl~e 193 (196)
++++++++.++|+++..++ +|.+.++++|||||.|||.|
T Consensus 77 id~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 77 VDAEYERLKAEGLPIVLPLRDEPWGQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred HHHHHHHHHhcCCCeeeccccCCCcceEEEEECCCCCEEEEEC
Confidence 9999999999999876442 46689999999999999986
No 50
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.72 E-value=2.5e-16 Score=118.12 Aligned_cols=105 Identities=17% Similarity=0.347 Sum_probs=79.9
Q ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCe--EEEEEecCCCCCCCCCCCCCCCceEEEEE
Q 029285 74 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHTCIA 151 (196)
Q Consensus 74 ~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~--~l~l~~~~~~~~~~~~p~~~~~~~hi~f~ 151 (196)
.+++|+.|.|+|++++++||+++|||++..... ...+|+..++. .+.+.. .. .++..|++|.
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~-----~~~~~l~~~~~~~~~~l~~--~~---------~~~~~hiaf~ 66 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG-----DQMAFLRCNSDHHSIAIAR--GP---------HPSLNHVAFE 66 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC-----CeEEEEECCCCcceEEEcc--CC---------CCceEEEEEE
Confidence 478999999999999999999999999875422 12467777643 333321 11 2367899999
Q ss_pred ECCHHHHH---HHHHHCCCeEEeeC-----CCceEEEEEcCCCCeEEEEee
Q 029285 152 IRDVSKLK---MILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQV 194 (196)
Q Consensus 152 v~dl~~~~---~~l~~~G~~~~~~~-----~g~~~~~~~DPdG~~iEl~e~ 194 (196)
|+|++++. ++|+++|+++...+ .+.+.+||+||+||.|||.+.
T Consensus 67 v~d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~ 117 (144)
T cd07239 67 MPSIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSE 117 (144)
T ss_pred CCCHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccC
Confidence 99888775 89999999986542 224678999999999999875
No 51
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.71 E-value=2.9e-16 Score=113.37 Aligned_cols=112 Identities=21% Similarity=0.294 Sum_probs=77.9
Q ss_pred eeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeC-CeEEEEEecCCCCC-CCCCCCCCCCceEEEEEEC
Q 029285 76 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-AEMIHLMELPNPDP-LSGRPEHGGRDRHTCIAIR 153 (196)
Q Consensus 76 l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g-~~~l~l~~~~~~~~-~~~~p~~~~~~~hi~f~v~ 153 (196)
++||+|.|+|+++|++||+. |||++...... ...+++..+ +..+.|........ ....+...++..|++|.+.
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~----~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADD----EPHVEAVLPGGVRLAWDTVESIRSFTPGWTPTGGHRIALAFLCE 75 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCC----CCcEEEEeCCCEEEEEEcccceeeecCCCCCCCCCcEEEEEEcC
Confidence 57999999999999999975 99998643321 123445555 45555543322110 0111222335568999875
Q ss_pred ---CHHHHHHHHHHCCCeEEeeC----CCceEEEEEcCCCCeEEEE
Q 029285 154 ---DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFT 192 (196)
Q Consensus 154 ---dl~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~iEl~ 192 (196)
|+++++++|+++|+++..++ +|.+.++++|||||.|||+
T Consensus 76 ~~~dvd~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 76 TPAEVDALYAELVGAGYPGHKEPWDAPWGQRYAIVKDPDGNLVDLF 121 (122)
T ss_pred CHHHHHHHHHHHHHCCCCcCCCCccCCCCCEEEEEECCCCCEEEEe
Confidence 89999999999999876443 5668899999999999996
No 52
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.71 E-value=4e-16 Score=112.23 Aligned_cols=113 Identities=27% Similarity=0.518 Sum_probs=83.7
Q ss_pred eeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCC-eEEEEEecCCCCCC-CC-CCCCCCCceEEEEEE
Q 029285 76 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPL-SG-RPEHGGRDRHTCIAI 152 (196)
Q Consensus 76 l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~-~~l~l~~~~~~~~~-~~-~p~~~~~~~hi~f~v 152 (196)
+.|+.|+|.|++++++||+++|||++..+ +.+ ..+++..++ ..+.++........ .. .+....+..|++|.+
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~-~~~----~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 75 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLK-EDR----RLAFFWVGGRGMLLLFDPGATSTPGGEIPPHGGSGPGHFAFAI 75 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeec-CCC----ceEEEEcCCCcEEEEEecCCcccccCCCCCCCCCCccEEEEEc
Confidence 36899999999999999999999998864 211 236677776 45666654432110 00 111234667999998
Q ss_pred C--CHHHHHHHHHHCCCeEEeeC---CCceEEEEEcCCCCeEEEEe
Q 029285 153 R--DVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQ 193 (196)
Q Consensus 153 ~--dl~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdG~~iEl~e 193 (196)
+ |++++++++.++|+++.... .+++.++++|||||.|||.+
T Consensus 76 ~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 121 (122)
T cd08354 76 PAEELAEWEAHLEAKGVAIESEVQWPRGGRSLYFRDPDGNLLELAT 121 (122)
T ss_pred CHHHHHHHHHHHHhcCCceeccccCCCCeeEEEEECCCCCEEEEec
Confidence 5 89999999999999886543 46789999999999999986
No 53
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.71 E-value=5.6e-16 Score=113.80 Aligned_cols=107 Identities=19% Similarity=0.331 Sum_probs=80.8
Q ss_pred eEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCe--EEEEEecCCCCCCCCCCCCCCCceEEEEEECC
Q 029285 77 HHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 154 (196)
Q Consensus 77 ~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~--~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v~d 154 (196)
+||+|.|+|++++++||+++||+++......+ .....+|+..++. .+.+..... ..+..|++|.|+|
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~hl~~~v~d 69 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDEDHHDLALFPGPE----------RPGLHHVAFEVES 69 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCCCcceEEEEcCCC----------CCCeeEEEEEcCC
Confidence 59999999999999999999999987654422 2234577777653 333333211 2467899999997
Q ss_pred HH---HHHHHHHHCCCeEEeeC-----CCceEEEEEcCCCCeEEEEee
Q 029285 155 VS---KLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQV 194 (196)
Q Consensus 155 l~---~~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdG~~iEl~e~ 194 (196)
++ +++++++++|+++...+ .+.+.++|+|||||.|||.+.
T Consensus 70 ~~~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~ 117 (131)
T cd08343 70 LDDILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAE 117 (131)
T ss_pred HHHHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcC
Confidence 75 67899999999886542 235788999999999999874
No 54
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.71 E-value=7.8e-16 Score=108.95 Aligned_cols=105 Identities=30% Similarity=0.470 Sum_probs=80.3
Q ss_pred EEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEECCHHHHH
Q 029285 80 GILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKLK 159 (196)
Q Consensus 80 ~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v~dl~~~~ 159 (196)
.|.|+|++++++||+++|||++....+. ...+++..++..++|......... ...+..|++|.++|+++++
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 73 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHPE----PGYAFLSRGGAQLMLSEHDGDEPV-----PLGRGGSVYIEVEDVDALY 73 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcCC----CcEEEEEeCCEEEEEeccCCCCCC-----CCCCcEEEEEEeCCHHHHH
Confidence 6899999999999999999998875431 123556667777777655433211 2234569999999999999
Q ss_pred HHHHHCCCe-EEee----CCCceEEEEEcCCCCeEEEEe
Q 029285 160 MILDKAGIS-YTLS----KSGRPAIFTRDPDANALEFTQ 193 (196)
Q Consensus 160 ~~l~~~G~~-~~~~----~~g~~~~~~~DPdG~~iEl~e 193 (196)
++++++|+. +..+ ..|.+.++++||+||.|||.|
T Consensus 74 ~~l~~~G~~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 74 AELKAKGADLIVYPPEDQPWGMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHHHcCCcceecCccCCCcccEEEEEECCCCCEEEecC
Confidence 999999998 4333 245688999999999999986
No 55
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.70 E-value=3.8e-16 Score=113.38 Aligned_cols=113 Identities=17% Similarity=0.141 Sum_probs=78.7
Q ss_pred eeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeC-CeEEEEEecCCCCCCCC--CC-CCCCCceEEEEE
Q 029285 76 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-AEMIHLMELPNPDPLSG--RP-EHGGRDRHTCIA 151 (196)
Q Consensus 76 l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g-~~~l~l~~~~~~~~~~~--~p-~~~~~~~hi~f~ 151 (196)
+.+|.|.|.|+++|++||++ |||+.......+. .+++..+ +..++|........... .+ ...++..|++|.
T Consensus 1 ~~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~----~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~f~ 75 (124)
T cd09012 1 MIFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEK----AACMVISDNIFVMLLTEDFFQTFTPKPIADTKKSTEVLISLS 75 (124)
T ss_pred CEEEEeecCCHHHHHHHHHH-CCCEEccccCCCC----eEEEEECCceEEEEEcHHHHhhccCCCcccCCCCCeEEEEEe
Confidence 36899999999999999987 8999875333222 2444454 45677765432110000 00 123345699999
Q ss_pred EC---CHHHHHHHHHHCCCeEEeeC---CCceEEEEEcCCCCeEEEEe
Q 029285 152 IR---DVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQ 193 (196)
Q Consensus 152 v~---dl~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdG~~iEl~e 193 (196)
|+ ++++++++++++|+++..++ .+++.+|++|||||.|||..
T Consensus 76 v~~~~~vd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 76 ADSREEVDELVEKALAAGGKEFREPQDHGFMYGRSFADLDGHLWEVLW 123 (124)
T ss_pred CCCHHHHHHHHHHHHHCCCcccCCcccCCceEEEEEECCCCCEEEEEE
Confidence 98 58889999999999986544 23567899999999999975
No 56
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.70 E-value=5.5e-16 Score=112.03 Aligned_cols=104 Identities=25% Similarity=0.374 Sum_probs=79.3
Q ss_pred EEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEECCHHH
Q 029285 78 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSK 157 (196)
Q Consensus 78 hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v~dl~~ 157 (196)
...|.|+|+++|++||++ |||++..+.+. ..+++..++..++|....... + .....|++|.|+|+++
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~-----~~~~~~~~~~~l~l~~~~~~~-----~--~~~~~~~~~~v~dvd~ 71 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQAA-----GYMILRRGDLELHFFAHPDLD-----P--ATSPFGCCLRLPDVAA 71 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCCC-----CEEEEEcCCEEEEEEecCcCC-----C--CCCcceEEEEeCCHHH
Confidence 457999999999999999 99998765432 234566677788887643211 1 1123579999999999
Q ss_pred HHHHHHHCCCeEE-------ee----CCCceEEEEEcCCCCeEEEEee
Q 029285 158 LKMILDKAGISYT-------LS----KSGRPAIFTRDPDANALEFTQV 194 (196)
Q Consensus 158 ~~~~l~~~G~~~~-------~~----~~g~~~~~~~DPdG~~iEl~e~ 194 (196)
++++|+++|+.+. .. ++|.+.++++|||||.|||.|.
T Consensus 72 ~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 72 LHAEFRAAGLPETGSGIPRITPPEDQPWGMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHHHHhCccccccCCCcccCCcCCCCceeEEEEECCCCCEEEeecC
Confidence 9999999999742 11 2577899999999999999884
No 57
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.70 E-value=6.2e-16 Score=107.69 Aligned_cols=108 Identities=30% Similarity=0.442 Sum_probs=86.7
Q ss_pred EEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEECCHHH
Q 029285 78 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSK 157 (196)
Q Consensus 78 hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v~dl~~ 157 (196)
|+.|.|+|++++++||+++||+++...... .....+++..++..++|...++.... ..+.+..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~~~~i~l~~~~~~~~~----~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--GGAEFAVLGLGGTRLELFEGDEPAPA----PSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--CCEEEEEEecCCceEEEecCCCCCCc----ccCCCeeEEEEECCCHHH
Confidence 899999999999999999999998876542 12345667767778888876654321 234567899999999999
Q ss_pred HHHHHHHCCCeEEeeC----CCceEEEEEcCCCCeEEE
Q 029285 158 LKMILDKAGISYTLSK----SGRPAIFTRDPDANALEF 191 (196)
Q Consensus 158 ~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~iEl 191 (196)
++++|.++|+.+...+ .+...+++.||+|+.|||
T Consensus 75 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERLKAAGVEVLGEPREEPWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHHHcCCcccCCCcCCCCCcEEEEEECCCCcEEeC
Confidence 9999999999886653 457999999999999986
No 58
>PRK06724 hypothetical protein; Provisional
Probab=99.70 E-value=5.6e-16 Score=114.03 Aligned_cols=107 Identities=22% Similarity=0.308 Sum_probs=74.8
Q ss_pred eceeeEEEEEcCCHHHHHHHHHhcc---CCEEeeecCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEE
Q 029285 73 VVSVHHVGILCENLERSLEFYQNIL---GLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTC 149 (196)
Q Consensus 73 i~~l~hv~l~v~Dl~~a~~FY~~vL---G~~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~p~~~~~~~hi~ 149 (196)
+.+++||.|.|+|+++|++||+++| |++..... .| ..++..+.|....... + ...+..|+|
T Consensus 5 ~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~---------~~-~~g~~~l~l~~~~~~~-----~-~~~g~~h~a 68 (128)
T PRK06724 5 RAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEV---------AY-STGESEIYFKEVDEEI-----V-RTLGPRHIC 68 (128)
T ss_pred CcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeE---------ee-eCCCeeEEEecCCccc-----c-CCCCceeEE
Confidence 4579999999999999999999966 56543210 11 1223334443322110 1 123568999
Q ss_pred EEE---CCHHHHHHHHHHCCCeEEeeC-------CCceEEEEEcCCCCeEEEEeec
Q 029285 150 IAI---RDVSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQVD 195 (196)
Q Consensus 150 f~v---~dl~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DPdG~~iEl~e~~ 195 (196)
|.| +++++++++|+++|+++..++ +|.+.+||+|||||.|||..-+
T Consensus 69 f~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 124 (128)
T PRK06724 69 YQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTP 124 (128)
T ss_pred EecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCC
Confidence 998 589999999999999885432 2347899999999999997643
No 59
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.69 E-value=7.9e-16 Score=111.12 Aligned_cols=111 Identities=22% Similarity=0.294 Sum_probs=75.0
Q ss_pred EEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCeEEEEEecCCCCCC--C-CCCCCCCCceEEEE--EE
Q 029285 78 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPL--S-GRPEHGGRDRHTCI--AI 152 (196)
Q Consensus 78 hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~--~-~~p~~~~~~~hi~f--~v 152 (196)
||+|.|+|+++|++||+++|||++....+ . .+.+..++..+.+......... . .......+..|++| .+
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 75 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE--T----WVDFDFFGHQLVAHLSPNFNADASDNAVDGHPVPVPHFGLILSE 75 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC--C----cccccccCcEEEEEeccCCCcccccCCCCCCccCCceEEEEEeH
Confidence 99999999999999999999999865321 1 1223344444444433221110 0 01112223457655 56
Q ss_pred CCHHHHHHHHHHCCCeEEeeC--------CCceEEEEEcCCCCeEEEEee
Q 029285 153 RDVSKLKMILDKAGISYTLSK--------SGRPAIFTRDPDANALEFTQV 194 (196)
Q Consensus 153 ~dl~~~~~~l~~~G~~~~~~~--------~g~~~~~~~DPdG~~iEl~e~ 194 (196)
+|+++++++|+++|+++..++ .+.+.+|++|||||.|||..+
T Consensus 76 ~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 125 (125)
T cd08357 76 EEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKAF 125 (125)
T ss_pred HHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEeeC
Confidence 799999999999999887432 235889999999999999863
No 60
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.69 E-value=7.7e-16 Score=111.02 Aligned_cols=107 Identities=23% Similarity=0.311 Sum_probs=79.2
Q ss_pred eceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeC--CeEEEEEecCCCCCCCCCCCCCCCceEEEE
Q 029285 73 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG--AEMIHLMELPNPDPLSGRPEHGGRDRHTCI 150 (196)
Q Consensus 73 i~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g--~~~l~l~~~~~~~~~~~~p~~~~~~~hi~f 150 (196)
++++.|+.|.|+|++++++||+++|||++....+ ..+|+... +....+...... .++..|++|
T Consensus 2 ~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~---------~~~~~hi~~ 66 (121)
T cd07266 2 ILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD------DRIYLRGLEEFIHHSLVLTKAP---------VAGLGHIAF 66 (121)
T ss_pred cceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC------CeEEEEecCCCceEEEEEeeCC---------CCceeEEEE
Confidence 5689999999999999999999999999876432 13556532 222333322111 135789999
Q ss_pred EEC---CHHHHHHHHHHCCCeEEee----C-CCceEEEEEcCCCCeEEEEee
Q 029285 151 AIR---DVSKLKMILDKAGISYTLS----K-SGRPAIFTRDPDANALEFTQV 194 (196)
Q Consensus 151 ~v~---dl~~~~~~l~~~G~~~~~~----~-~g~~~~~~~DPdG~~iEl~e~ 194 (196)
.|. ++++++++++++|+++... . .+++.+|+.|||||.|||+..
T Consensus 67 ~v~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 67 RVRSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAE 118 (121)
T ss_pred ECCCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEec
Confidence 995 8888999999999988643 1 235789999999999999863
No 61
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.68 E-value=9.3e-16 Score=110.11 Aligned_cols=100 Identities=18% Similarity=0.213 Sum_probs=76.4
Q ss_pred EEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEECCHHHH
Q 029285 79 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKL 158 (196)
Q Consensus 79 v~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v~dl~~~ 158 (196)
..|.|+|+++|++||++ |||++....+ ..+++..++..+.|........ ....+++|.|+|++++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~~------~~~~l~~~~~~l~l~~~~~~~~--------~~~~~~~~~v~did~~ 69 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEND------NLAYFRLGNCAFYLQDYYVKDW--------AENSMLHLEVDDLEAY 69 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecCC------CEEEEEcCCEEEEeecCCCccc--------ccCCEEEEEECCHHHH
Confidence 46889999999999988 9999987532 2477888877776654221111 1235799999999999
Q ss_pred HHHHHHCCCeEE---------eeCCCceEEEEEcCCCCeEEEEe
Q 029285 159 KMILDKAGISYT---------LSKSGRPAIFTRDPDANALEFTQ 193 (196)
Q Consensus 159 ~~~l~~~G~~~~---------~~~~g~~~~~~~DPdG~~iEl~e 193 (196)
+++|+++|+++. ..++|.+.++|+|||||.|+|.|
T Consensus 70 ~~~l~~~G~~~~~~~~~~~~~~~~~g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 70 YEHIKALGLPKKFPGVKLPPITQPWWGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHHHcCCcccccceecCccccCCCcEEEEEECCCccEEEeeC
Confidence 999999998642 12467899999999999999975
No 62
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.68 E-value=2.6e-15 Score=108.21 Aligned_cols=107 Identities=24% Similarity=0.431 Sum_probs=77.4
Q ss_pred eEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEECC--
Q 029285 77 HHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD-- 154 (196)
Q Consensus 77 ~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v~d-- 154 (196)
.|+.|.|+|++++.+||+++||++.....+ . ...|. .++..+.+........ + .++..|++|.+++
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~--~---~~~~~-~~~~~~~~~~~~~~~~----~--~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD--D---YAKFL-LEDPRLNFVLNERPGA----P--GGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC--C---eeEEE-ecCCceEEEEecCCCC----C--CCCeeEEEEEeCCHH
Confidence 599999999999999999999999865432 1 12333 3333344433222111 1 1467899999987
Q ss_pred -HHHHHHHHHHCCCeEEeeCC------CceEEEEEcCCCCeEEEEeec
Q 029285 155 -VSKLKMILDKAGISYTLSKS------GRPAIFTRDPDANALEFTQVD 195 (196)
Q Consensus 155 -l~~~~~~l~~~G~~~~~~~~------g~~~~~~~DPdG~~iEl~e~~ 195 (196)
++++++++.++|+++...+. +.+.+|++|||||.|||++..
T Consensus 71 dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 71 EVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred HHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 78899999999999875432 246799999999999999864
No 63
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.68 E-value=1.1e-15 Score=114.29 Aligned_cols=104 Identities=18% Similarity=0.273 Sum_probs=77.8
Q ss_pred eEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCe-EEEEEecCCCCCCCCCCCCCCCceEEEEEECCH
Q 029285 77 HHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE-MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDV 155 (196)
Q Consensus 77 ~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~-~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v~dl 155 (196)
+||.|.|+|++++++||+++|||++..+... ..+|+...+. ..+.+... +...++++|++|.|+|+
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~~-----~~~~l~~~~~~~~h~~~~~--------~~~~~gl~Hiaf~v~~~ 67 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIED-----RIVFMRCHPNPFHHTFAVG--------PASSSHFHHVNFMVTDI 67 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeCC-----EEEEEEcCCCCCcceeeec--------cCCCCceEEEEEECCCH
Confidence 5999999999999999999999998765321 3577775432 22333211 11235889999999865
Q ss_pred ---HHHHHHHHHCCCeEEeeC-----CCceEEEEEcCCCCeEEEEe
Q 029285 156 ---SKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQ 193 (196)
Q Consensus 156 ---~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdG~~iEl~e 193 (196)
++++++|+++|+++...+ .+.+.+|++||||+.|||..
T Consensus 68 ~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~ 113 (141)
T cd07258 68 DDIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSF 113 (141)
T ss_pred HHHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEe
Confidence 567999999999886442 34688999999999999975
No 64
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.68 E-value=1.3e-15 Score=126.90 Aligned_cols=114 Identities=20% Similarity=0.327 Sum_probs=81.5
Q ss_pred CCceeceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCc-eeEEEEeCCeE--EEEEecCCCCCCCCCCCCCCCc
Q 029285 69 IDYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPY-RGAWLWVGAEM--IHLMELPNPDPLSGRPEHGGRD 145 (196)
Q Consensus 69 ~~~~i~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~-~~~~l~~g~~~--l~l~~~~~~~~~~~~p~~~~~~ 145 (196)
.++.+.+++||+|.|+|++++++||+++|||++..+...+.... ..+|+..++.. +.+.. . + ..+..
T Consensus 139 ~~~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~-~~g~~ 208 (303)
T TIGR03211 139 RGVGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNKAHDIAFVG--D-------P-EPGKL 208 (303)
T ss_pred CCcCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCCCcccceec--C-------C-CCCce
Confidence 44667899999999999999999999999999875432222211 34566554321 21111 0 1 12347
Q ss_pred eEEEEEECCH---HHHHHHHHHCCCeEEeeC--C---CceEEEEEcCCCCeEEEE
Q 029285 146 RHTCIAIRDV---SKLKMILDKAGISYTLSK--S---GRPAIFTRDPDANALEFT 192 (196)
Q Consensus 146 ~hi~f~v~dl---~~~~~~l~~~G~~~~~~~--~---g~~~~~~~DPdG~~iEl~ 192 (196)
+|+||.|+|+ ++++++|+++|+++..++ . +++.+||+|||||.|||.
T Consensus 209 ~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~ 263 (303)
T TIGR03211 209 HHVSFFLDSWEDVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETF 263 (303)
T ss_pred EEEEEEcCCHHHHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEe
Confidence 8999999964 457889999999986543 1 257899999999999997
No 65
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.67 E-value=2.7e-15 Score=108.43 Aligned_cols=107 Identities=23% Similarity=0.319 Sum_probs=75.8
Q ss_pred eeEEEEEcCCHHHHHHHHHhc---cCCEEeeecCCCCCCceeEEEEeC--CeEEEEEecCCCCCCCCCCCCCCCceEEEE
Q 029285 76 VHHVGILCENLERSLEFYQNI---LGLEINEARPHDKLPYRGAWLWVG--AEMIHLMELPNPDPLSGRPEHGGRDRHTCI 150 (196)
Q Consensus 76 l~hv~l~v~Dl~~a~~FY~~v---LG~~~~~~~~~~~~~~~~~~l~~g--~~~l~l~~~~~~~~~~~~p~~~~~~~hi~f 150 (196)
++|+.|.|+|+++|++||+++ ||+++..+.+ . ...++..+ +..+.+....... +...++..|++|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~--~---~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~hi~f 70 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMEDG--P---GAVGYGKGGGGPDFWVTKPFDGE-----PATAGNGTHVAF 70 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeecC--C---ceeEeccCCCCceEEEeccccCC-----CCCCCCceEEEE
Confidence 579999999999999999998 6999875431 1 11233333 3466665432211 111223479999
Q ss_pred EECC---HHHHHHHHHHCCCeEEeeC-------CCceEEEEEcCCCCeEEEE
Q 029285 151 AIRD---VSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFT 192 (196)
Q Consensus 151 ~v~d---l~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DPdG~~iEl~ 192 (196)
.|++ ++++++++.++|+.+..++ .+.+.+|++|||||.|||+
T Consensus 71 ~v~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 71 AAPSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred ECCCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 9996 7888999999999876543 1245789999999999996
No 66
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.66 E-value=4.1e-15 Score=104.78 Aligned_cols=100 Identities=28% Similarity=0.532 Sum_probs=72.8
Q ss_pred EEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCC----eEEEEEecCCCCCCCCCCCCCCCceEEEEEECCHH
Q 029285 81 ILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA----EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVS 156 (196)
Q Consensus 81 l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~----~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v~dl~ 156 (196)
|.|+|++++++||+++|||++....+ ..+.+..+. ....+...+.. +....+..|++|.|+|++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~v~dv~ 68 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP------DYVDFSLGFRFHDGVIEFLQFPDP------PGPPGGGFHLCFEVEDVD 68 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET------SEEEEEETEEEEEEEEEEEEEESS------SSSSSSEEEEEEEESHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC------CeEEEEeccchhhhhHHHccCCcc------ccCCCceeEEEEEEcCHH
Confidence 68999999999999999999998433 123444432 12333333221 112346689999999999
Q ss_pred HHHHHHHHCCCeEEee----CCCceEEEEEcCCCCeEEEE
Q 029285 157 KLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFT 192 (196)
Q Consensus 157 ~~~~~l~~~G~~~~~~----~~g~~~~~~~DPdG~~iEl~ 192 (196)
+++++++++|+++..+ +.|.+.+++.|||||.|||+
T Consensus 69 ~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 69 ALYERLKELGAEIVTEPRDDPWGQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHHHHHTTSEEEEEEEEETTSEEEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHCCCeEeeCCEEcCCCeEEEEEECCCCCEEEeC
Confidence 9999999999997543 35679999999999999985
No 67
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.66 E-value=4.7e-15 Score=105.58 Aligned_cols=102 Identities=18% Similarity=0.168 Sum_probs=75.3
Q ss_pred EEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCC---eEEEEEecCCCCCCCCCCCCCCCceEEEEEECC
Q 029285 78 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA---EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 154 (196)
Q Consensus 78 hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~---~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v~d 154 (196)
+..|+|+|++++++||+++|||+..... . ..+++..++ ..+.+...... +....|++|.|+|
T Consensus 3 ~~~l~v~Dl~~s~~FY~~~lG~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~~~v~d 67 (112)
T cd07238 3 VPNLPVADPEAAAAFYADVLGLDVVMDH---G---WIATFASPQNMTVQVSLATEGGT---------ATVVPDLSIEVDD 67 (112)
T ss_pred cceEecCCHHHHHHHHHHhcCceEEEcC---C---ceEEEeecCCCCcEEEEecCCCC---------CCCCCEEEEEeCC
Confidence 3478999999999999999999986431 1 223344332 34444433211 1234699999999
Q ss_pred HHHHHHHHHHCCCeEEeeC----CCceEEEEEcCCCCeEEEEee
Q 029285 155 VSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQV 194 (196)
Q Consensus 155 l~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~iEl~e~ 194 (196)
+++++++|+++|+.+..++ +|.+.+++.|||||.|+|.+.
T Consensus 68 ~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 68 VDAALARAVAAGFAIVYGPTDEPWGVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHHHHHHhcCCeEecCCccCCCceEEEEEECCCCCEEEEEEc
Confidence 9999999999999986543 456889999999999999874
No 68
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.66 E-value=4.8e-15 Score=105.76 Aligned_cols=106 Identities=22% Similarity=0.265 Sum_probs=77.8
Q ss_pred EEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEe-CCeEEEEEecCCCCCCCCCCCCCCCceEEEEEECC---
Q 029285 79 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD--- 154 (196)
Q Consensus 79 v~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~-g~~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v~d--- 154 (196)
+.|.|+|+++|++||+++||+++....+ . .+++.. ++..+.++....... .+...++..|++|.+++
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~~--~----~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELSP--T----FALFVLGSGVKLGLWSRHTVEP---ASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCCC--c----eEEEEeCCCcEEEEeeccccCC---CCCCCCCceEEEEEcCCHHH
Confidence 6799999999999999999999775322 1 234444 456777776443221 11123456799999985
Q ss_pred HHHHHHHHHHCCCeEEeeC---CCceEEEEEcCCCCeEEEEe
Q 029285 155 VSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQ 193 (196)
Q Consensus 155 l~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdG~~iEl~e 193 (196)
++++++++.++|+++..++ ..++.++++|||||.|||+.
T Consensus 73 ~~~~~~~~~~~g~~v~~~~~~~~~g~~~~~~DPdGn~ie~~~ 114 (114)
T cd07261 73 VDALYAEWQAKGVKIIQEPTEMDFGYTFVALDPDGHRLRVFA 114 (114)
T ss_pred HHHHHHHHHHCCCeEecCccccCCccEEEEECCCCCEEEeeC
Confidence 8889999999999987653 22478999999999999973
No 69
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.65 E-value=3.6e-15 Score=123.66 Aligned_cols=115 Identities=26% Similarity=0.393 Sum_probs=82.1
Q ss_pred CCceeceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCe--EEEEEecCCCCCCCCCCCCCCCce
Q 029285 69 IDYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDR 146 (196)
Q Consensus 69 ~~~~i~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~--~l~l~~~~~~~~~~~~p~~~~~~~ 146 (196)
.++.+++++||+|.|+|+++|++||+++|||++..............|+..++. .+.+.. ..+++++
T Consensus 130 ~~~~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 198 (294)
T TIGR02295 130 RGVSPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKGGVHDIALTN-----------GNGPRLH 198 (294)
T ss_pred CCccceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCCCcCceEeec-----------CCCCcee
Confidence 355788999999999999999999999999998765433222233456654332 122211 1134789
Q ss_pred EEEEEECCH---HHHHHHHHHCCCe--EEeeC--C---CceEEEEEcCCCCeEEEEee
Q 029285 147 HTCIAIRDV---SKLKMILDKAGIS--YTLSK--S---GRPAIFTRDPDANALEFTQV 194 (196)
Q Consensus 147 hi~f~v~dl---~~~~~~l~~~G~~--~~~~~--~---g~~~~~~~DPdG~~iEl~e~ 194 (196)
|+||.|+|. ++++++|+++|++ +...+ . +...+|++||+||.|||++.
T Consensus 199 Hiaf~v~d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~ 256 (294)
T TIGR02295 199 HIAYWVHDPLNIIKACDILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTG 256 (294)
T ss_pred eEEEEcCCHHHHHHHHHHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEec
Confidence 999999984 4568899999987 54332 1 24679999999999999864
No 70
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.65 E-value=5e-15 Score=105.77 Aligned_cols=100 Identities=26% Similarity=0.400 Sum_probs=71.1
Q ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEe-CCe--EEEEEecCCCCCCCCCCCCCCCceE--EE
Q 029285 75 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAE--MIHLMELPNPDPLSGRPEHGGRDRH--TC 149 (196)
Q Consensus 75 ~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~-g~~--~l~l~~~~~~~~~~~~p~~~~~~~h--i~ 149 (196)
+++||+|.|.|++++++||+ .|||++..+.+ ..++.. ++. .+.+... . .....| +.
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~~-------~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~~~ 62 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-AFGLDVREEGD-------GLELRTAGNDHRWARLLEG--A---------RKRLAYLSFG 62 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-HhCCcEEeecC-------ceEEEecCCCceEEEeecC--C---------CCceeeEEEE
Confidence 68999999999999999998 69999875421 133333 222 2323211 1 112344 44
Q ss_pred EEECCHHHHHHHHHHCCCeEEeeC--CCceEEEEEcCCCCeEEEEe
Q 029285 150 IAIRDVSKLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFTQ 193 (196)
Q Consensus 150 f~v~dl~~~~~~l~~~G~~~~~~~--~g~~~~~~~DPdG~~iEl~e 193 (196)
+.++|+++++++|+++|+++...+ .+.+.+||+|||||.|||..
T Consensus 63 ~~~~d~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~DP~Gn~iel~~ 108 (112)
T cd08344 63 IFEDDFAAFARHLEAAGVALAAAPPGADPDGVWFRDPDGNLLQVKV 108 (112)
T ss_pred eEhhhHHHHHHHHHHcCCceecCCCcCCCCEEEEECCCCCEEEEec
Confidence 455799999999999999986543 34578999999999999985
No 71
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.65 E-value=5.4e-15 Score=106.03 Aligned_cols=110 Identities=20% Similarity=0.277 Sum_probs=79.1
Q ss_pred EEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCC--CCCCCceEEEEEE---C
Q 029285 79 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRP--EHGGRDRHTCIAI---R 153 (196)
Q Consensus 79 v~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~p--~~~~~~~hi~f~v---~ 153 (196)
|.|.|+|+++|.+||+++|||++..+ +.+ ...++..++..++++..+........+ ..+.+..|++|.+ +
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~-~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSAD-SND----GVAFFQLGGLVLALFPREELAKDAGVPVPPPGFSGITLAHNVRSEE 76 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceeccc-CCC----ceEEEEcCCeEEEEecchhhhhhcCCCCCCCCccceEEEEEcCCHH
Confidence 78999999999999999999998765 111 235677777788887644221111111 1222334566665 5
Q ss_pred CHHHHHHHHHHCCCeEEeeC----CCceEEEEEcCCCCeEEEEe
Q 029285 154 DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQ 193 (196)
Q Consensus 154 dl~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~iEl~e 193 (196)
|++++++++++.|+++..++ +|++.++++||+||.|||..
T Consensus 77 d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 77 EVDAVLARAAAAGATIVKPPQDVFWGGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred HHHHHHHHHHhCCCEEecCCccCCCCceEEEEECCCCCEEEEee
Confidence 89999999999999986543 45789999999999999975
No 72
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.64 E-value=4.7e-15 Score=122.77 Aligned_cols=107 Identities=21% Similarity=0.280 Sum_probs=80.1
Q ss_pred eceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEE
Q 029285 73 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 152 (196)
Q Consensus 73 i~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v 152 (196)
+.+++|++|.|+|+++|++||+++|||++..+.+ . ...|+..++....+.....+. .+..|++|.|
T Consensus 1 ~~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~--~---~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~f~V 66 (286)
T TIGR03213 1 VRGLGYLGIGVSDVDAWREFATEVLGMMVASEGE--N---DALYLRLDSRAHRIAVHPGES---------DDLAYAGWEV 66 (286)
T ss_pred CceeeEEEEEeCCHHHHHHHHHhccCcccccCCC--C---ceEEEEcCCCceEEEEEECCc---------CCeeeEeeee
Confidence 4689999999999999999999999999765322 1 124667764323332222111 2457899999
Q ss_pred CC---HHHHHHHHHHCCCeEEeeC-------CCceEEEEEcCCCCeEEEEe
Q 029285 153 RD---VSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQ 193 (196)
Q Consensus 153 ~d---l~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DPdG~~iEl~e 193 (196)
++ ++++.++|+++|+++...+ .++..++|.|||||.|||+.
T Consensus 67 ~~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~ 117 (286)
T TIGR03213 67 ADEAGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYY 117 (286)
T ss_pred CCHHHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEE
Confidence 98 8889999999999987532 23578999999999999986
No 73
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.63 E-value=9.7e-15 Score=120.89 Aligned_cols=112 Identities=15% Similarity=0.262 Sum_probs=81.0
Q ss_pred eceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCC--C-CCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEE
Q 029285 73 VVSVHHVGILCENLERSLEFYQNILGLEINEARPH--D-KLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTC 149 (196)
Q Consensus 73 i~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~--~-~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~p~~~~~~~hi~ 149 (196)
+.+++||+|.|+|+++|++||+++|||++..+... + ...+..+|+..++....+.....+ ..++.+|++
T Consensus 140 ~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~l~~~~--------~~~~~~Hia 211 (286)
T TIGR03213 140 DQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNERHHSLAFAAGP--------SEKRLNHLM 211 (286)
T ss_pred CccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCCcceEEEecCC--------CCCceEEEE
Confidence 56899999999999999999999999998764321 1 111245777776433222211111 124688999
Q ss_pred EEECCHHH---HHHHHHHCCCeEEeeC-----CCceEEEEEcCCCCeEEEEe
Q 029285 150 IAIRDVSK---LKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQ 193 (196)
Q Consensus 150 f~v~dl~~---~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdG~~iEl~e 193 (196)
|.|+|+++ ++++|+++|+ ....+ .+...+|++||+|+.||+..
T Consensus 212 f~v~d~~~v~~~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~ 262 (286)
T TIGR03213 212 LEVDTLDDVGLALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGW 262 (286)
T ss_pred EEcCCHHHHHHHHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeec
Confidence 99998777 7999999999 43322 34678999999999999975
No 74
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.60 E-value=1.5e-14 Score=120.49 Aligned_cols=105 Identities=21% Similarity=0.262 Sum_probs=79.4
Q ss_pred eceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeC----CeEEEEEecCCCCCCCCCCCCCCCceEE
Q 029285 73 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG----AEMIHLMELPNPDPLSGRPEHGGRDRHT 148 (196)
Q Consensus 73 i~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g----~~~l~l~~~~~~~~~~~~p~~~~~~~hi 148 (196)
+++++|+.|.|+|++++++||+++|||++..+.+. .+++... ...+.+.. . ...+..|+
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~~------~~~~~~~~~~~~~~~~l~~--~---------~~~g~~hi 64 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDGQ------RVYLKAWDEWDHYSVILTE--A---------DTAGLDHM 64 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCc------eEEEEeccccccceEeecc--C---------CCCceeEE
Confidence 56899999999999999999999999998764321 2444432 11222221 1 12357899
Q ss_pred EEEEC---CHHHHHHHHHHCCCeEEeeC-----CCceEEEEEcCCCCeEEEEee
Q 029285 149 CIAIR---DVSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQV 194 (196)
Q Consensus 149 ~f~v~---dl~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdG~~iEl~e~ 194 (196)
+|.|+ ++++++++|+++|+++...+ ..++.+||+|||||.|||.+.
T Consensus 65 af~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~ 118 (303)
T TIGR03211 65 AFKVESEADLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAE 118 (303)
T ss_pred EEEeCCHHHHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEc
Confidence 99998 78899999999999986533 236789999999999999974
No 75
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=2.3e-14 Score=106.36 Aligned_cols=120 Identities=18% Similarity=0.305 Sum_probs=78.5
Q ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCeEEEEEecCCCCCCCC----CCCCCC-CceEE
Q 029285 74 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSG----RPEHGG-RDRHT 148 (196)
Q Consensus 74 ~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~----~p~~~~-~~~hi 148 (196)
.++.|+.|.+++.-+...||..+||++.....+.+... ...|+......++|...-.....+. .+...+ +++||
T Consensus 41 tr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~-~~v~~~~~~~~~ELthn~Gtes~~~~~~~ngN~~prGfgHI 119 (170)
T KOG2944|consen 41 TRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHG-VSVFVFSRNAKLELTHNWGTESPPDQAYLNGNKEPRGFGHI 119 (170)
T ss_pred hhhccceeechhhhhHhhhHHHhhcccccccCccCCCC-CceEEecccCceeeecCCCCCCCcchhhcCCCCCCCccceE
Confidence 34445555555555555555555555444333332222 2267777777788876544433331 122333 88999
Q ss_pred EEEECCHHHHHHHHHHCCCeEEeeCC-C--ceEEEEEcCCCCeEEEEee
Q 029285 149 CIAIRDVSKLKMILDKAGISYTLSKS-G--RPAIFTRDPDANALEFTQV 194 (196)
Q Consensus 149 ~f~v~dl~~~~~~l~~~G~~~~~~~~-g--~~~~~~~DPdG~~iEl~e~ 194 (196)
||.|+|++.++++|+++|+++...++ | ...+|+.||||+.|||...
T Consensus 120 ci~V~di~sac~~lkekGV~f~Kk~~dGk~K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 120 CIEVDDINSACERLKEKGVRFKKKLKDGKMKPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred EEEeCCHHHHHHHHHHhCceeeecCCCccccceeEEECCCCCeEEEeec
Confidence 99999999999999999999876654 4 3679999999999999754
No 76
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.59 E-value=5.2e-14 Score=116.73 Aligned_cols=107 Identities=21% Similarity=0.285 Sum_probs=80.2
Q ss_pred eceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCC--eEEEEEecCCCCCCCCCCCCCCCceEEEE
Q 029285 73 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA--EMIHLMELPNPDPLSGRPEHGGRDRHTCI 150 (196)
Q Consensus 73 i~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~--~~l~l~~~~~~~~~~~~p~~~~~~~hi~f 150 (196)
|.+++||.|.|+|++++++||+++|||++..+.+ ..+|+...+ ....+.....+ ..+..|++|
T Consensus 2 i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~------~~~~~~~~~~~~~~~l~l~~~~---------~~~~~hiaf 66 (294)
T TIGR02295 2 ILRTGHVELRVTDLDKSREFYVDLLGFRETESDK------EYIYLRGIEEFQHHSLVLTKAP---------SAALSYIGF 66 (294)
T ss_pred CceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC------CeEEEeccCcCCceEEEeeeCC---------CcCccEEEE
Confidence 5789999999999999999999999999876532 135554321 11222211111 135689999
Q ss_pred EEC---CHHHHHHHHHHCCCeEEeeC--CCceEEEEEcCCCCeEEEEee
Q 029285 151 AIR---DVSKLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFTQV 194 (196)
Q Consensus 151 ~v~---dl~~~~~~l~~~G~~~~~~~--~g~~~~~~~DPdG~~iEl~e~ 194 (196)
.|+ |+++++++|+++|+++...+ .+.+.+||+|||||.|||.+.
T Consensus 67 ~v~~~~dl~~~~~~l~~~Gv~v~~~~~~~~~~~~~~~DPdG~~iEl~~~ 115 (294)
T TIGR02295 67 RVSKEEDLDKAADFFQKLGHPVRLVRDGGQPEALRVEDPFGYPIEFYFE 115 (294)
T ss_pred EeCCHHHHHHHHHHHHhcCCcEEeecCCCCceEEEEECCCCCEEEEEEc
Confidence 997 78899999999999987543 346899999999999999873
No 77
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.58 E-value=1.2e-14 Score=103.63 Aligned_cols=94 Identities=26% Similarity=0.393 Sum_probs=77.2
Q ss_pred eEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCC--eEEEEEecCCCCCCCCCCCCCCCceEEEEEECC
Q 029285 77 HHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA--EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 154 (196)
Q Consensus 77 ~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~--~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v~d 154 (196)
+||+|.|+|+++|++||+++||+........+....+.+|+..++ ..++|+++....... ...+.+++||||.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~~~~~~~--~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPLDGDSPL--DRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEESSTTCHH--HHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeCCCCccc--ccCCCCEEEEEEEeCC
Confidence 699999999999999999999999877666666667788998887 589999876654111 1267789999999999
Q ss_pred HHHHHHHHHHCCCeEEee
Q 029285 155 VSKLKMILDKAGISYTLS 172 (196)
Q Consensus 155 l~~~~~~l~~~G~~~~~~ 172 (196)
+++..++|+++|+++...
T Consensus 79 ~d~~~~~l~~~G~~~~~~ 96 (109)
T PF13669_consen 79 LDAAIARLEAQGFRVLDE 96 (109)
T ss_dssp HHHHHHHHHHTTECEEEC
T ss_pred HHHHHHHHHHCCCEEccc
Confidence 999999999999998653
No 78
>PLN02300 lactoylglutathione lyase
Probab=99.58 E-value=5.4e-14 Score=116.67 Aligned_cols=119 Identities=20% Similarity=0.234 Sum_probs=88.4
Q ss_pred eceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCC----eEEEEEecCCCCCCCCCCCCCCCceEE
Q 029285 73 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA----EMIHLMELPNPDPLSGRPEHGGRDRHT 148 (196)
Q Consensus 73 i~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~----~~l~l~~~~~~~~~~~~p~~~~~~~hi 148 (196)
..++.|+.|.|+|++++.+||+++|||++......+...+..+++..++ ..+++...... ..+..+++..|+
T Consensus 152 ~~~~~~~~l~~~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~----~~~~~g~~~~~i 227 (286)
T PLN02300 152 PEPLCQVMLRVGDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYGV----TEYTKGNAYAQI 227 (286)
T ss_pred CCcceeEEEEeCCHHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeecCCC----CccccCCceeEE
Confidence 3578899999999999999999999999986544334445666665432 23444321111 112335677899
Q ss_pred EEEECCHHHHHHHHHHCCCeEEeeC---CC--ceEEEEEcCCCCeEEEEeec
Q 029285 149 CIAIRDVSKLKMILDKAGISYTLSK---SG--RPAIFTRDPDANALEFTQVD 195 (196)
Q Consensus 149 ~f~v~dl~~~~~~l~~~G~~~~~~~---~g--~~~~~~~DPdG~~iEl~e~~ 195 (196)
+|.|+|+++++++++++|+++..++ ++ ++.++++||||+.++|++..
T Consensus 228 ~~~v~di~~~~~~~~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~ 279 (286)
T PLN02300 228 AIGTDDVYKTAEAIKLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDNI 279 (286)
T ss_pred EEecCCHHHHHHHHHHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEccc
Confidence 9999999999999999999987643 23 47899999999999999864
No 79
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.46 E-value=1e-12 Score=92.63 Aligned_cols=111 Identities=25% Similarity=0.442 Sum_probs=77.4
Q ss_pred eeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeC--CeEEEEEecCCCCCCCCCCC--CCCCceEEEEE
Q 029285 76 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG--AEMIHLMELPNPDPLSGRPE--HGGRDRHTCIA 151 (196)
Q Consensus 76 l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g--~~~l~l~~~~~~~~~~~~p~--~~~~~~hi~f~ 151 (196)
+-|++|.|+|+++++.||.++||.+.....+ .|+.++ |.++.....+.++.....+. ++--..|++..
T Consensus 5 ~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd--------~wvdfDfyGHQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfGvV 76 (138)
T COG3565 5 PFHLAIPVNDLDETRRFYGEVLGCKEGRSTD--------TWVDFDFYGHQVVAHLTPQPDSQGSGKVDGHGVPPPHFGVV 76 (138)
T ss_pred ceEEeeeccccHHHHhhhhhhcccccccccc--------eEEEeeecccEEEEEecCCcccccCcccCCCCCCCccceEE
Confidence 5699999999999999999999999765432 566654 44444433333322211122 22233466654
Q ss_pred --ECCHHHHHHHHHHCCCeEEeeC--------CCceEEEEEcCCCCeEEEEee
Q 029285 152 --IRDVSKLKMILDKAGISYTLSK--------SGRPAIFTRDPDANALEFTQV 194 (196)
Q Consensus 152 --v~dl~~~~~~l~~~G~~~~~~~--------~g~~~~~~~DPdG~~iEl~e~ 194 (196)
++|.-++.++|+++|+.+..++ ...+.+|+.||.||.+|+...
T Consensus 77 l~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~f 129 (138)
T COG3565 77 LPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGF 129 (138)
T ss_pred EEHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeecc
Confidence 5588899999999999875543 347899999999999999753
No 80
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.42 E-value=7.7e-12 Score=91.13 Aligned_cols=113 Identities=19% Similarity=0.214 Sum_probs=80.4
Q ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCC-e-EEEEEecCCCCCCCCCCCCCCCceEEEEE
Q 029285 74 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA-E-MIHLMELPNPDPLSGRPEHGGRDRHTCIA 151 (196)
Q Consensus 74 ~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~-~-~l~l~~~~~~~~~~~~p~~~~~~~hi~f~ 151 (196)
..+.|..|++.|++++++||.++|||+.....+..+ ...+.+..++ . .-.+...+.. .|. +..-++.|.
T Consensus 8 ~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~--~~y~~f~~~~~~~gG~l~~~~~~-----~p~--~~~~~iy~~ 78 (127)
T COG3324 8 GTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGE--MRYAVFPADGAGAGGGLMARPGS-----PPG--GGGWVIYFA 78 (127)
T ss_pred CccEEEeeecCCHHHHHHHHHHhhCceecccccCCC--ceEEEEECCCccccceeccCCcC-----CCC--CCCEEEEEe
Confidence 457899999999999999999999999876433222 2333333332 1 1111111111 111 234578899
Q ss_pred ECCHHHHHHHHHHCCCeEEeeC----CCceEEEEEcCCCCeEEEEeec
Q 029285 152 IRDVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQVD 195 (196)
Q Consensus 152 v~dl~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~iEl~e~~ 195 (196)
|+|+++..++..+.|..+..++ .+++.+.+.||+||+|.|+++.
T Consensus 79 v~did~~l~rv~~~GG~V~~p~~~~p~~G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 79 VDDIDATLERVVAAGGKVLRPKTEFPGGGRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred cCChHHHHHHHHhcCCeEEecccccCCceEEEEEECCCCCEEEEeecC
Confidence 9999999999999999987653 4789999999999999999865
No 81
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.41 E-value=5e-12 Score=101.86 Aligned_cols=112 Identities=25% Similarity=0.397 Sum_probs=87.0
Q ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCe-EEEEEecCCCCCCCCCCCCCCCceEEEEEE
Q 029285 74 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE-MIHLMELPNPDPLSGRPEHGGRDRHTCIAI 152 (196)
Q Consensus 74 ~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~-~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v 152 (196)
+.++.+.|.|+|++++..||+++||+++..+.+ ..+-+..++. -+.|.+.++... .+....+..|++|.+
T Consensus 9 ~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~------~~v~L~vgg~~LL~L~q~~~a~~---~~~~~aGLyH~AfLl 79 (265)
T COG2514 9 TFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD------GSVTLGVGGTPLLTLEQFPDARR---PPPRAAGLYHTAFLL 79 (265)
T ss_pred cEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC------ceEEEeeCCEEEEEEEeCCCCCC---CCccccceeeeeeec
Confidence 578999999999999999999999999998654 2345777776 455555444432 223456888999999
Q ss_pred C---CHHHHHHHHHHCCCeEEeeCC--CceEEEEEcCCCCeEEEEee
Q 029285 153 R---DVSKLKMILDKAGISYTLSKS--GRPAIFTRDPDANALEFTQV 194 (196)
Q Consensus 153 ~---dl~~~~~~l~~~G~~~~~~~~--g~~~~~~~DPdG~~iEl~e~ 194 (196)
+ |+..+..++.+.|+.+....+ -..++|+.|||||-||++..
T Consensus 80 P~r~~L~~~l~hl~~~~~~l~Ga~DH~vSEAlYl~DPEGNGIEiYaD 126 (265)
T COG2514 80 PTREDLARVLNHLAEEGIPLVGASDHLVSEALYLEDPEGNGIEIYAD 126 (265)
T ss_pred CCHHHHHHHHHHHHhcCCcccccCcchhheeeeecCCCCCeEEEEec
Confidence 9 677778899999998864332 36789999999999999875
No 82
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=99.41 E-value=3.1e-12 Score=91.51 Aligned_cols=118 Identities=20% Similarity=0.253 Sum_probs=85.8
Q ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCC---CCCCCCceEEEEE
Q 029285 75 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGR---PEHGGRDRHTCIA 151 (196)
Q Consensus 75 ~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~---p~~~~~~~hi~f~ 151 (196)
.+-.|.|.|+|+++|.+||+. |||+......++. ..+++..++..+.|.+......-... ......-..+|+.
T Consensus 3 ~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde~---a~~mi~~~ni~vMLL~~~~fq~F~~~~i~dt~~s~evli~ls 78 (133)
T COG3607 3 QMIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDED---AACMIISDNIFVMLLEEARFQTFTKRQIADTTKSREVLISLS 78 (133)
T ss_pred eEEEEecchhhHHHHHHHHHH-hCcccCCCccccc---ceeEEEeccEEEEEeccHHhhhhcccccccccCCceEEEEec
Confidence 456799999999999999998 9999998655433 34566667777777765433211111 1123344578888
Q ss_pred EC---CHHHHHHHHHHCCCeEEeeC--CC-ceEEEEEcCCCCeEEEEeecC
Q 029285 152 IR---DVSKLKMILDKAGISYTLSK--SG-RPAIFTRDPDANALEFTQVDG 196 (196)
Q Consensus 152 v~---dl~~~~~~l~~~G~~~~~~~--~g-~~~~~~~DPdG~~iEl~e~~~ 196 (196)
+. +++++.++..+.|.++..++ .| .+...|.|||||.||+...+|
T Consensus 79 ~~s~eevd~~v~ka~eaGGk~~~~~~d~gfMYg~~fqDpDGh~wE~l~m~~ 129 (133)
T COG3607 79 AGSREEVDELVDKALEAGGKPANEPQDEGFMYGRSFQDPDGHVWEFLWMDP 129 (133)
T ss_pred cCcHHHHHHHHHHHHHcCCCCCCCccccccccceeeeCCCCCeEEEEEeCH
Confidence 87 77888999999999885544 22 577889999999999998875
No 83
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.33 E-value=8.1e-12 Score=97.94 Aligned_cols=99 Identities=18% Similarity=0.158 Sum_probs=72.1
Q ss_pred ceeeEEEEEcC--CHHHHHHHHHhccCCEEeeecCCCC--CCceeEEEEeC--CeEEEEEecCCCCCCC--CC---CCCC
Q 029285 74 VSVHHVGILCE--NLERSLEFYQNILGLEINEARPHDK--LPYRGAWLWVG--AEMIHLMELPNPDPLS--GR---PEHG 142 (196)
Q Consensus 74 ~~l~hv~l~v~--Dl~~a~~FY~~vLG~~~~~~~~~~~--~~~~~~~l~~g--~~~l~l~~~~~~~~~~--~~---p~~~ 142 (196)
.+++||++.|+ |++++++||+++|||+.....+.++ ...+...+..+ +..+.|.+...+.... .. ...+
T Consensus 2 ~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~~~~~s~~~~fl~~~~G 81 (191)
T cd07250 2 TRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPASGKRKSQIQEFLEYYGG 81 (191)
T ss_pred ceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCCCCCccHHHHHHHHhCC
Confidence 57899999999 9999999999999999887554332 22333445543 3567777654421111 10 1136
Q ss_pred CCceEEEEEECCHHHHHHHHHHCCCeEEee
Q 029285 143 GRDRHTCIAIRDVSKLKMILDKAGISYTLS 172 (196)
Q Consensus 143 ~~~~hi~f~v~dl~~~~~~l~~~G~~~~~~ 172 (196)
.|.+||||.|+|+++++++|+++|+++...
T Consensus 82 ~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~ 111 (191)
T cd07250 82 AGVQHIALATDDIFATVAALRARGVEFLPI 111 (191)
T ss_pred CceeEEEEECCCHHHHHHHHHHcCCeeccC
Confidence 788999999999999999999999988544
No 84
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.27 E-value=3.1e-10 Score=83.05 Aligned_cols=108 Identities=18% Similarity=0.135 Sum_probs=77.2
Q ss_pred EEEEc-CCHHHHHHHHHhccCCEEeeecCCCC----------CCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceE
Q 029285 79 VGILC-ENLERSLEFYQNILGLEINEARPHDK----------LPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRH 147 (196)
Q Consensus 79 v~l~v-~Dl~~a~~FY~~vLG~~~~~~~~~~~----------~~~~~~~l~~g~~~l~l~~~~~~~~~~~~p~~~~~~~h 147 (196)
..|.+ .|.++|++||+++||+++......+. .....+-+..++..+.+......... .++...+
T Consensus 3 p~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~~l~~~d~~~~~~~-----~~~~~~~ 77 (128)
T cd06588 3 PYLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQRLMASDGGPGFPF-----TFGNGIS 77 (128)
T ss_pred eEEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCEEEEEEcCCCCCCC-----CCCCCEE
Confidence 34667 89999999999999999997654221 22345678888888877764332211 1233458
Q ss_pred EEEEECC---HHHHHHHHHHCCCeEEee----CCCceEEEEEcCCCCeEEEE
Q 029285 148 TCIAIRD---VSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFT 192 (196)
Q Consensus 148 i~f~v~d---l~~~~~~l~~~G~~~~~~----~~g~~~~~~~DPdG~~iEl~ 192 (196)
+++.|++ +++++++|.+.| .+..+ ++|.+...++||+|+.|+|.
T Consensus 78 l~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~g~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 78 LSVECDSEEEADRLFEALSEGG-TVLMPLQKTFWSPLFGWVTDRFGVSWQIN 128 (128)
T ss_pred EEEECCCHHHHHHHHHHHhcCC-eEeccchhcCcccccEEEECCCCCEEEeC
Confidence 9999886 667789988777 55433 46778999999999999973
No 85
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.25 E-value=2.8e-11 Score=95.67 Aligned_cols=116 Identities=18% Similarity=0.210 Sum_probs=87.7
Q ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCC-----------CCceeEEEEeCCeEEEEEecCCCCCCCCCCCCC
Q 029285 74 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDK-----------LPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHG 142 (196)
Q Consensus 74 ~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~-----------~~~~~~~l~~g~~~l~l~~~~~~~~~~~~p~~~ 142 (196)
.++.|+.+.|.|.++++.||+++|||++....+.++ .....+|+..|...-|++.--...-....++.|
T Consensus 16 ~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~~YelG 95 (299)
T KOG2943|consen 16 RRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVSKYELG 95 (299)
T ss_pred hheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCccceecc
Confidence 578899999999999999999999999998666555 334456777776554554222222223456788
Q ss_pred CCceEEEEEECCHHHHHHHHHHCCCeEEeeCCCceEEEEEcCCCCeEEEEe
Q 029285 143 GRDRHTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQ 193 (196)
Q Consensus 143 ~~~~hi~f~v~dl~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~iEl~e 193 (196)
+++.||.+.++|+-...+.+...|. ...|.-.+++.||||+.+++.+
T Consensus 96 ndfg~i~I~s~dv~~~ve~v~~p~~----~~~g~~~~~v~dPdGykF~l~~ 142 (299)
T KOG2943|consen 96 NDFGGITIASDDVFSKVEKVNAPGG----KGSGCGIAFVKDPDGYKFYLID 142 (299)
T ss_pred CCcccEEEeHHHHHHHHHHhcCcCC----cccceEEEEEECCCCcEEEEec
Confidence 8999999999999888888887664 2234466889999999999986
No 86
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.21 E-value=2.1e-10 Score=98.01 Aligned_cols=105 Identities=17% Similarity=0.195 Sum_probs=74.3
Q ss_pred CCceeceeeEEEEEcC--CHHHHHHHHHhccCCEEeeecCCCC--CCceeEEEEe--CCeEEEEEecCCCCCCC--C---
Q 029285 69 IDYGVVSVHHVGILCE--NLERSLEFYQNILGLEINEARPHDK--LPYRGAWLWV--GAEMIHLMELPNPDPLS--G--- 137 (196)
Q Consensus 69 ~~~~i~~l~hv~l~v~--Dl~~a~~FY~~vLG~~~~~~~~~~~--~~~~~~~l~~--g~~~l~l~~~~~~~~~~--~--- 137 (196)
.++.+.+++||++.|. |++++++||+++|||+.....+... .......+.. ++..++|.++....... .
T Consensus 152 ~~~~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~~g~~~i~L~ep~~~~~~s~i~~fl 231 (353)
T TIGR01263 152 PGVGLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASPDGKVKIPLNEPASGKDKSQIEEFL 231 (353)
T ss_pred CCCCeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECCCCcEEEEEeccCCCCCCCHHHHHH
Confidence 4567889999999999 9999999999999999876543211 1112222332 34678887653221111 1
Q ss_pred CCCCCCCceEEEEEECCHHHHHHHHHHCCCeEEeeC
Q 029285 138 RPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSK 173 (196)
Q Consensus 138 ~p~~~~~~~hi~f~v~dl~~~~~~l~~~G~~~~~~~ 173 (196)
....+.|++||||.|+|+++++++|+++|+++...|
T Consensus 232 ~~~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P 267 (353)
T TIGR01263 232 EFYNGAGVQHIALNTDDIVRTVRALRARGVEFLDTP 267 (353)
T ss_pred HHcCCCCccEEEEEcCCHHHHHHHHHHcCCccCcCC
Confidence 112367899999999999999999999999886543
No 87
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=99.19 E-value=5.9e-11 Score=84.69 Aligned_cols=120 Identities=22% Similarity=0.311 Sum_probs=72.5
Q ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCce-eEEEEeCC--eEEEEEecC-------CCC-CCCCCCCCC
Q 029285 74 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYR-GAWLWVGA--EMIHLMELP-------NPD-PLSGRPEHG 142 (196)
Q Consensus 74 ~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~-~~~l~~g~--~~l~l~~~~-------~~~-~~~~~p~~~ 142 (196)
++++||+|.|+|+++|++||+++||+++............ ...+.... ......... ... .........
T Consensus 1 ~~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (138)
T COG0346 1 MGIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPG 80 (138)
T ss_pred CceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecC
Confidence 3689999999999999999999999999986654332210 11111111 011111100 000 000000111
Q ss_pred --CCceEEEEEECC---HHHHHHHHHHCCCeEEeeC--CCceEEEEEcCCCCeEEEEe
Q 029285 143 --GRDRHTCIAIRD---VSKLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFTQ 193 (196)
Q Consensus 143 --~~~~hi~f~v~d---l~~~~~~l~~~G~~~~~~~--~g~~~~~~~DPdG~~iEl~e 193 (196)
.+..|+++.+++ ...........|..+.... ..+..+|++||||+.+||.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 81 GDLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEPGRGGVHVYFRDPDGILIELAT 138 (138)
T ss_pred chhccCceeEecccccccceEEEeeCCCCCEEEeecCCCcceEEEEECCCCcEEEeeC
Confidence 246799999998 5566667777787765432 12238999999999999974
No 88
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.16 E-value=2.6e-09 Score=79.04 Aligned_cols=113 Identities=19% Similarity=0.164 Sum_probs=85.8
Q ss_pred EEEcC-CHHHHHHHHHhccCCEEeeecCCCC----------CCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEE
Q 029285 80 GILCE-NLERSLEFYQNILGLEINEARPHDK----------LPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHT 148 (196)
Q Consensus 80 ~l~v~-Dl~~a~~FY~~vLG~~~~~~~~~~~----------~~~~~~~l~~g~~~l~l~~~~~~~~~~~~p~~~~~~~hi 148 (196)
-|.++ |.++|++||+++||.++..+.+..+ ...-++-|.++++.+.+........ ....++....|
T Consensus 5 Yl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g~~im~sd~~~~~~---~~~~~~~s~~l 81 (136)
T COG2764 5 YLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGGSTIMLSDAFPDMG---ATEGGGTSLSL 81 (136)
T ss_pred EEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECCEEEEEecCCCccC---cccCCCeeEEE
Confidence 46778 9999999999999999998777666 3455677888888887765432221 11112223467
Q ss_pred EEEECCHHHHHHHHHHCCCeEEee----CCCceEEEEEcCCCCeEEEEeec
Q 029285 149 CIAIRDVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQVD 195 (196)
Q Consensus 149 ~f~v~dl~~~~~~l~~~G~~~~~~----~~g~~~~~~~DPdG~~iEl~e~~ 195 (196)
.+.+.|++.+++++.+.|++++.+ .+|.+...++||.|+.|.|....
T Consensus 82 ~~~~~d~da~f~~a~~aGa~v~mpl~~~fwG~r~G~v~D~fGv~W~l~~~~ 132 (136)
T COG2764 82 DLYVEDVDAVFERAAAAGATVVMPLEDTFWGDRYGQVTDPFGVVWMLNTPV 132 (136)
T ss_pred EEEehHHHHHHHHHHhcCCeEEecchhcCcccceEEEECCCCCEEEEecCc
Confidence 777889999999999999888665 37889999999999999998653
No 89
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.12 E-value=2.1e-09 Score=91.78 Aligned_cols=97 Identities=12% Similarity=0.130 Sum_probs=72.5
Q ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCeEEEEEecCCCCCCCC--CCCCCCCceEEEEEE
Q 029285 75 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSG--RPEHGGRDRHTCIAI 152 (196)
Q Consensus 75 ~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~--~p~~~~~~~hi~f~v 152 (196)
+++||.|+|+|++++++||.+.|||+......... ....+.+..|+..++|.....+..... ...++.+.+|+||.|
T Consensus 2 ~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~-~~~~~~~~~G~~~l~L~~~~~~~s~~~~~~~~hg~gv~~iaf~V 80 (353)
T TIGR01263 2 GFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHR-EKASHVLRQGQINFVLTAPYSSDSPAADFAAKHGDGVKDVAFRV 80 (353)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCC-ceeEEEEEeCCEEEEEecCCCCCchHHHHHHhCCCceEEEEEEE
Confidence 68999999999999999999999999987521111 112334566777888886554332111 123677889999999
Q ss_pred CCHHHHHHHHHHCCCeEEee
Q 029285 153 RDVSKLKMILDKAGISYTLS 172 (196)
Q Consensus 153 ~dl~~~~~~l~~~G~~~~~~ 172 (196)
+|++++++++.++|+.+..+
T Consensus 81 ~Dv~~a~~~l~~~Ga~~v~~ 100 (353)
T TIGR01263 81 DDAAAAFEAAVERGAEPVQA 100 (353)
T ss_pred CCHHHHHHHHHHCCCEeccC
Confidence 99999999999999988543
No 90
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.92 E-value=9.9e-09 Score=88.46 Aligned_cols=101 Identities=13% Similarity=0.118 Sum_probs=75.1
Q ss_pred ceeceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCC-----CceeEEEEeCC--eEEEEEecCCC---CCCCCC--
Q 029285 71 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKL-----PYRGAWLWVGA--EMIHLMELPNP---DPLSGR-- 138 (196)
Q Consensus 71 ~~i~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~-----~~~~~~l~~g~--~~l~l~~~~~~---~~~~~~-- 138 (196)
..+.+++||++.|++++.++.||+++|||+.....+.++. ..+...+..++ ..+.|.++... ......
T Consensus 176 ~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~g~v~ipLnEP~~~~~~~SqI~eFL 255 (398)
T PLN02875 176 YGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNNEMVLLPLNEPTFGTKRKSQIQTYL 255 (398)
T ss_pred CCcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCCCcEEEEeccCCCCCCCcChHHHHH
Confidence 3467999999999999999999999999998864443222 23455566543 57888776532 121111
Q ss_pred -CCCCCCceEEEEEECCHHHHHHHHHHC----CCeEEe
Q 029285 139 -PEHGGRDRHTCIAIRDVSKLKMILDKA----GISYTL 171 (196)
Q Consensus 139 -p~~~~~~~hi~f~v~dl~~~~~~l~~~----G~~~~~ 171 (196)
...|+|++||||.++||.++.++|+++ |+++..
T Consensus 256 ~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~ 293 (398)
T PLN02875 256 EHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMP 293 (398)
T ss_pred HhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCC
Confidence 224689999999999999999999999 998865
No 91
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.80 E-value=3.8e-08 Score=82.68 Aligned_cols=103 Identities=19% Similarity=0.235 Sum_probs=69.3
Q ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCeEEEEE-ecCCCCCCCCCCCCCCCceEEEEEEC
Q 029285 75 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLM-ELPNPDPLSGRPEHGGRDRHTCIAIR 153 (196)
Q Consensus 75 ~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~l~l~-~~~~~~~~~~~p~~~~~~~hi~f~v~ 153 (196)
..-||+|.|+|+++|++||+++|++.. ..++.. +-+ ++..+.+. ..++. ....-.-+|+.++
T Consensus 247 ~~IfVNLpV~DL~rS~~FYt~LF~~n~---Fsde~a----~cm--~dtI~vMllt~~D~--------~~~~evLl~Ls~~ 309 (357)
T PRK01037 247 KTFSVVLEVQDLRRAKKFYSKMFGLEC---WDGDKL----FLL--GKTSLYLQQTKAEK--------KNRGTTTLSLELE 309 (357)
T ss_pred ceEEEEeeeCCHHHHHHHHHHHhCCCC---CCCCcc----ccc--cCcEEEEEecCCCC--------CCcceEEEEeccC
Confidence 556999999999999999999877773 222221 112 44433333 22211 1123456999988
Q ss_pred ---CHHHHHHHHHHCCCeEEeeC-CCceEEEEEcCCCCeEEEEee
Q 029285 154 ---DVSKLKMILDKAGISYTLSK-SGRPAIFTRDPDANALEFTQV 194 (196)
Q Consensus 154 ---dl~~~~~~l~~~G~~~~~~~-~g~~~~~~~DPdG~~iEl~e~ 194 (196)
++++++++..++|.....++ +.+..--|.|||||.||++..
T Consensus 310 Sre~VD~lv~~A~aaGG~~~~~~~D~Gf~rsf~D~DGH~WEi~~~ 354 (357)
T PRK01037 310 CEHDFVRFLRRWEMLGGELGEQADGHFPLRLVFDLDGHIWVVSCV 354 (357)
T ss_pred CHHHHHHHHHHHHHcCCCCCCCcccccCcceeECCCCCEEEEEEE
Confidence 77788999999998654333 223377899999999999864
No 92
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=98.71 E-value=4.9e-08 Score=75.26 Aligned_cols=93 Identities=19% Similarity=0.307 Sum_probs=59.5
Q ss_pred eeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCeEEEEEecCCCCCCC--CCC------CCCCCceE
Q 029285 76 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLS--GRP------EHGGRDRH 147 (196)
Q Consensus 76 l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~--~~p------~~~~~~~h 147 (196)
++|+.+.|+|++++.++|++.|||.+.........+..++.+.+++..|||+......... ... ..+.+..+
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~~YlEli~i~~~~~~~~~~~~~~~~~~~~~~g~~~ 80 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGDGYLELIAIDPEAPAPDRGRWFGLDRLAGGEGLYG 80 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SSSEEEEEEES-HHHSTGGGT-TTTHHHHT--EEEE
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCCceEEEEEeCCcccccccccceechhhcCCCCeEE
Confidence 6899999999999999998889999998777766677778788887799999864332211 110 14678889
Q ss_pred EEEEECCHHHHHHHHHHCCCe
Q 029285 148 TCIAIRDVSKLKMILDKAGIS 168 (196)
Q Consensus 148 i~f~v~dl~~~~~~l~~~G~~ 168 (196)
+|+.++|+++..++|++.|+.
T Consensus 81 ~~l~t~d~~~~~~~l~~~G~~ 101 (175)
T PF13468_consen 81 WALRTDDIEAVAARLRAAGLD 101 (175)
T ss_dssp EEEE-S-HHHHHHHHHTTT-E
T ss_pred EEEecCCHHHHHHHHHhcCCC
Confidence 999999999999999999975
No 93
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=98.67 E-value=1.2e-07 Score=75.38 Aligned_cols=110 Identities=22% Similarity=0.308 Sum_probs=75.8
Q ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCe--EEEEEecCCCCCCCCCCCCCCCceEEEEEE
Q 029285 75 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHTCIAI 152 (196)
Q Consensus 75 ~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~--~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v 152 (196)
.+..|.|.|.|+++|++||.++|||++.+.. ..+..+.|..++. .++|....+.... ..+...++|.+
T Consensus 149 pv~~V~l~VgdL~ks~kyw~~~lgM~ileke----ek~t~~~mgYgd~q~~LElt~~~~~id~------~kg~griafai 218 (299)
T KOG2943|consen 149 PVLQVMLNVGDLQKSIKYWEKLLGMKILEKE----EKYTRARMGYGDEQCVLELTYNYDVIDR------AKGFGRIAFAI 218 (299)
T ss_pred CeEEEEEEehhHHHHHHHHHHHhCcchhhhh----hhhhhhhhccCCcceEEEEEeccCcccc------cccceeEEEec
Confidence 4679999999999999999999999999752 2234456766654 4555544333211 12445566665
Q ss_pred C--CHHHHHHHHHHCCCeEEe-----eCCC---ceEEEEEcCCCCeEEEEee
Q 029285 153 R--DVSKLKMILDKAGISYTL-----SKSG---RPAIFTRDPDANALEFTQV 194 (196)
Q Consensus 153 ~--dl~~~~~~l~~~G~~~~~-----~~~g---~~~~~~~DPdG~~iEl~e~ 194 (196)
+ ++..+.+.++..+.++.. +.+| ...+.+.||||+.+.|+..
T Consensus 219 p~d~~~~l~e~iK~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVdd 270 (299)
T KOG2943|consen 219 PTDDLPKLQEAIKSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVDD 270 (299)
T ss_pred cccccccHHHHHHHhccccccceeeccCCCcceeEEEEEECCCCceEEEecc
Confidence 5 888888888877655522 1222 4778899999999998753
No 94
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=98.58 E-value=4.5e-07 Score=73.43 Aligned_cols=97 Identities=24% Similarity=0.318 Sum_probs=66.4
Q ss_pred eceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCeEEEEEe--cCCCCCCCCCCCCCCCceEEEE
Q 029285 73 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLME--LPNPDPLSGRPEHGGRDRHTCI 150 (196)
Q Consensus 73 i~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~l~l~~--~~~~~~~~~~p~~~~~~~hi~f 150 (196)
-..++||.|.|.|++++.+||+++|||+...+.+ ...|+..|+...|+.. +..... ...+....++..+.+
T Consensus 166 ~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~~~------~A~F~a~G~YHHHia~N~W~s~~~-~~~~~~~~GLa~~~i 238 (265)
T COG2514 166 GTIIGHVHLKVADLEEAEQFYEDVLGLEVTARGP------SALFLASGDYHHHLAANTWNSRGA-RPRNANASGLAWLEI 238 (265)
T ss_pred CcEEeEEEEEeCCHHHHHHHHHHhcCCeeeecCC------cceEEecCCcceeEEEeccccCCC-CCCCCCCCCcceEEE
Confidence 4679999999999999999999999999998622 2478999988777754 332221 122234456777888
Q ss_pred EECCHHHHHHHHHHCCCeEEeeCCCceEEEEEcCCCCeEEEE
Q 029285 151 AIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFT 192 (196)
Q Consensus 151 ~v~dl~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~iEl~ 192 (196)
.+++-..+... +.+ ..||+|+.+.+.
T Consensus 239 ~~~~~~~l~~~-------------~~~---~~Dp~G~~i~~~ 264 (265)
T COG2514 239 HTPDPEKLDAT-------------GTR---LTDPWGIVIRVV 264 (265)
T ss_pred EcCCccccccc-------------ccc---eecCCCceEEEe
Confidence 87763322110 011 189999999875
No 95
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.55 E-value=4.6e-06 Score=59.70 Aligned_cols=110 Identities=18% Similarity=0.185 Sum_probs=63.6
Q ss_pred eEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeC--CeEEEEEecCCCCCCCCCCCCCCCceEEEEEECC
Q 029285 77 HHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG--AEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 154 (196)
Q Consensus 77 ~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g--~~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v~d 154 (196)
.+-+|+|+|-+..++||++.|||++..+.. ..+++... ...+.|-+.+....+ .-+..-...++.+.|++
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~~~~erlvlEESP~~rtr--~V~G~KKl~~ivIkv~~ 73 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQQKEERLVLEESPSMRTR--AVEGPKKLNRIVIKVPN 73 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-TT--EEEEEEE--TTT-B----SSS-SEEEEEEEESS
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCCCCceEEEEecCCccccc--cccCcceeeEEEEEcCC
Confidence 466899999999999999999999987542 23455443 235555555544321 11112357799999998
Q ss_pred HHHHHHHHHHCCCeEEe--eCCCceEEEEEcCCCCeEEEEeec
Q 029285 155 VSKLKMILDKAGISYTL--SKSGRPAIFTRDPDANALEFTQVD 195 (196)
Q Consensus 155 l~~~~~~l~~~G~~~~~--~~~g~~~~~~~DPdG~~iEl~e~~ 195 (196)
-.++- .|.++|..+.. ....+++|-+.+|+|+.|.+...+
T Consensus 74 ~~EIe-~LLar~~~~~~l~kg~~gyAfe~vSPEgd~~llhaEd 115 (125)
T PF14506_consen 74 PKEIE-ALLARGAQYDRLYKGKNGYAFEAVSPEGDRFLLHAED 115 (125)
T ss_dssp HHHHH-HHHHC-S--SEEEE-SSSEEEEEE-TT--EEEEE--S
T ss_pred HHHHH-HHHhcccccceeEEcCCceEEEEECCCCCEEEEEEcC
Confidence 77653 44455555432 234578899999999999998654
No 96
>PRK10148 hypothetical protein; Provisional
Probab=98.51 E-value=1.2e-05 Score=60.37 Aligned_cols=108 Identities=14% Similarity=0.034 Sum_probs=72.1
Q ss_pred EEEcC-CHHHHHHHHHhccCCEEeeecCC--------------------CCCCceeEEEEeCCeEEEEEecCCCCCCCCC
Q 029285 80 GILCE-NLERSLEFYQNILGLEINEARPH--------------------DKLPYRGAWLWVGAEMIHLMELPNPDPLSGR 138 (196)
Q Consensus 80 ~l~v~-Dl~~a~~FY~~vLG~~~~~~~~~--------------------~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~ 138 (196)
-|..+ |.++|++||+++||.++...... .+...-++-+.+++..+.+.......
T Consensus 6 yL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~~lm~sD~~~~~----- 80 (147)
T PRK10148 6 YLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGSDIMMSDAIPSG----- 80 (147)
T ss_pred EEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCEEEEEECCCCCc-----
Confidence 45564 89999999999999988653210 11223456788888766665422111
Q ss_pred CCCCCCceEEEEEECCHHH---HHHHHHHCCCeEEee----CCCceEEEEEcCCCCeEEEEee
Q 029285 139 PEHGGRDRHTCIAIRDVSK---LKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 194 (196)
Q Consensus 139 p~~~~~~~hi~f~v~dl~~---~~~~l~~~G~~~~~~----~~g~~~~~~~DPdG~~iEl~e~ 194 (196)
+..+ ...++++.++|.++ ++++| +.|.++..+ .+|.+...|+||.|+.|.|...
T Consensus 81 ~~~~-~~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~wg~~~g~v~D~fGi~W~l~~~ 141 (147)
T PRK10148 81 KAHY-SGFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFWAHGFGKVTDKFGVPWMINVV 141 (147)
T ss_pred CCCC-CeEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcchhhccEEEECCCCCEEEEEec
Confidence 1111 23578888888877 45666 466777544 3677889999999999999764
No 97
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.36 E-value=1.8e-06 Score=64.16 Aligned_cols=121 Identities=11% Similarity=0.040 Sum_probs=76.1
Q ss_pred CCCceeceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceE
Q 029285 68 KIDYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRH 147 (196)
Q Consensus 68 ~~~~~i~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~p~~~~~~~h 147 (196)
.+|+.+.+++||.+.+.|.++...+++ .|||+.+.+..... ...++-|+..+.|-..++.........+|.+..-
T Consensus 2 ~nP~g~~G~dFvEFa~~~~~~l~~~~~-~lGF~~~a~hrsk~----v~l~rQG~I~~vln~ep~s~a~~~~~~HG~sv~a 76 (139)
T PF14696_consen 2 DNPLGLDGFDFVEFAVPDAQALAQLFT-ALGFQPVARHRSKD----VTLYRQGDINFVLNSEPDSFAAEFAAQHGPSVCA 76 (139)
T ss_dssp --TT-EEEEEEEEEE-SSTTSCHHHHC-CCCEEEECCECCCS----EEEEEETTEEEEEEEESTSCHHHHHHHHSSEEEE
T ss_pred CCCCCCCCeEEEEEecCCHHHHHHHHH-HhCcceEEecCCcc----eEEEEeCCEEEEEeCCCcchHHHHHHhcCCEEEE
Confidence 478899999999999999877777775 59999998654322 2345667777777553322110001336788899
Q ss_pred EEEEECCHHHHHHHHHHCCCeEEeeCC---CceEEEEEcCCCCeEEEEe
Q 029285 148 TCIAIRDVSKLKMILDKAGISYTLSKS---GRPAIFTRDPDANALEFTQ 193 (196)
Q Consensus 148 i~f~v~dl~~~~~~l~~~G~~~~~~~~---g~~~~~~~DPdG~~iEl~e 193 (196)
++|.|+|...++++..++|.+....+. .-..--++-+.|-++-|++
T Consensus 77 iafrV~Da~~A~~rA~~~GA~~~~~~~~~~e~~~paI~g~G~sl~yfVd 125 (139)
T PF14696_consen 77 IAFRVDDAAAAYERAVALGAEPVQEPTGPGELNIPAIRGIGGSLHYFVD 125 (139)
T ss_dssp EEEEES-HHHHHHHHHHTT--EEEEEEETT-BEEEEEE-CCC-EEEEEE
T ss_pred EEEEeCCHHHHHHHHHHcCCcCcccCCCCCcEeeeeEEccCCCEEEEEe
Confidence 999999999999999999998755431 1233345555555555554
No 98
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.22 E-value=3.6e-05 Score=66.66 Aligned_cols=118 Identities=14% Similarity=0.130 Sum_probs=79.5
Q ss_pred eeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCC--CceeEEEEeCCeEEEEEecCCCC--C----------CC---C-
Q 029285 76 VHHVGILCENLERSLEFYQNILGLEINEARPHDKL--PYRGAWLWVGAEMIHLMELPNPD--P----------LS---G- 137 (196)
Q Consensus 76 l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~--~~~~~~l~~g~~~l~l~~~~~~~--~----------~~---~- 137 (196)
++||.++|.|.+++..||+..|||+.+.....+.. ......++-|+..+.+-....+. . .+ .
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g~i~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSGDLVFLFTAPYSPKIGAGDDDPASTAPHPSFSSD 80 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeCCEEEEEeCCCCCccccccccccccccccccCcH
Confidence 58999999999999999999999998875542121 12234456666666666552220 0 00 0
Q ss_pred -----CCCCCCCceEEEEEECCHHHHHHHHHHCCCeEEeeCCC---------ceEEEEEcCCCCeEEEEe
Q 029285 138 -----RPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSKSG---------RPAIFTRDPDANALEFTQ 193 (196)
Q Consensus 138 -----~p~~~~~~~hi~f~v~dl~~~~~~l~~~G~~~~~~~~g---------~~~~~~~DPdG~~iEl~e 193 (196)
...+|.+..-++|.|+|++++++++.++|..+..++.+ -...-+.-++|..+-|++
T Consensus 81 ~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVd 150 (398)
T PLN02875 81 AARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVS 150 (398)
T ss_pred HHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEc
Confidence 02367888899999999999999999999887544311 122335566666666665
No 99
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.02 E-value=1.7e-05 Score=66.59 Aligned_cols=103 Identities=16% Similarity=0.211 Sum_probs=70.7
Q ss_pred CceeceeeEEEEEcC--CHHHHHHHHHhccCCEEeeecCCCCC--Ccee-EEEEeCC-eEEEEEecCCCCCCCC---CCC
Q 029285 70 DYGVVSVHHVGILCE--NLERSLEFYQNILGLEINEARPHDKL--PYRG-AWLWVGA-EMIHLMELPNPDPLSG---RPE 140 (196)
Q Consensus 70 ~~~i~~l~hv~l~v~--Dl~~a~~FY~~vLG~~~~~~~~~~~~--~~~~-~~l~~g~-~~l~l~~~~~~~~~~~---~p~ 140 (196)
...+..++|+...|+ .++.+..||+.+|||+.....+..+. ..+. ++....+ .++-|-...+..+..+ ..-
T Consensus 162 ~~g~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp~G~vrlplN~s~~~~sqi~efl~~y 241 (363)
T COG3185 162 GVGLTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSPCGKVRLPLNESADDKSQIGEFLREY 241 (363)
T ss_pred ccCceeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecCCCcEEeecccCCCchhHHHHHHHHh
Confidence 344578999998876 99999999999999998865543331 1222 2233223 3555544433322111 123
Q ss_pred CCCCceEEEEEECCHHHHHHHHHHCCCeEEee
Q 029285 141 HGGRDRHTCIAIRDVSKLKMILDKAGISYTLS 172 (196)
Q Consensus 141 ~~~~~~hi~f~v~dl~~~~~~l~~~G~~~~~~ 172 (196)
.|.|+.||+|.++|+-++.++|+++|+++...
T Consensus 242 ~G~GIQHIA~~T~dI~~tv~~lr~rG~~fl~i 273 (363)
T COG3185 242 RGEGIQHIAFGTDDIYATVAALRERGVKFLPI 273 (363)
T ss_pred CCCcceEEEecccHHHHHHHHHHHcCCccCCC
Confidence 67899999999999999999999999987543
No 100
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=98.02 E-value=2.2e-05 Score=64.99 Aligned_cols=103 Identities=16% Similarity=0.163 Sum_probs=72.4
Q ss_pred ceeceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCC--ceeEEEEeCCeEEEEEecCCCCC-CC--CCCCCCCCc
Q 029285 71 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLP--YRGAWLWVGAEMIHLMELPNPDP-LS--GRPEHGGRD 145 (196)
Q Consensus 71 ~~i~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~--~~~~~l~~g~~~l~l~~~~~~~~-~~--~~p~~~~~~ 145 (196)
-++.+++||.+.|.|...+..||+..|||+....+.-+... ....-++-|...+.+...-.+.. .. ..+.+|.+.
T Consensus 13 g~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g~~vFv~~s~~~p~~~~~G~~l~~Hgdgv 92 (381)
T KOG0638|consen 13 GKFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQGKIVFVFNSAYNPDNSEYGDHLVKHGDGV 92 (381)
T ss_pred cceeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcCCEEEEEecCCCCCchhhhhhhhhcccch
Confidence 34789999999999999999999999999987644322211 11112344445455544433322 11 125577788
Q ss_pred eEEEEEECCHHHHHHHHHHCCCeEEeeC
Q 029285 146 RHTCIAIRDVSKLKMILDKAGISYTLSK 173 (196)
Q Consensus 146 ~hi~f~v~dl~~~~~~l~~~G~~~~~~~ 173 (196)
..+||+|+|++.+.+.+.++|+.+..++
T Consensus 93 kdvafeVeD~da~~~~~va~Ga~v~~~p 120 (381)
T KOG0638|consen 93 KDVAFEVEDADAIFQEAVANGAKVVRPP 120 (381)
T ss_pred hceEEEecchHHHHHHHHHcCCcccCCc
Confidence 8999999999999999999999886554
No 101
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=97.43 E-value=0.0047 Score=44.47 Aligned_cols=96 Identities=22% Similarity=0.212 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHhccCCEEeee---cCCC----CCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEECCHH
Q 029285 84 ENLERSLEFYQNILGLEINEA---RPHD----KLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVS 156 (196)
Q Consensus 84 ~Dl~~a~~FY~~vLG~~~~~~---~~~~----~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v~dl~ 156 (196)
.|.++|.+||.++||-..+.. .+.. ....-.+.+..++..+......... + .+ ....+++.+++.+
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~g~~lm~~D~~~~~-----~-~~-~~~sl~i~~~~~e 83 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIGGQKLMASDGGPDF-----P-FG-NNISLCIECDDEE 83 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEETTEEEEEEEESTS-----------TTEEEEEEESSHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEECCeEEEEECCCCCC-----C-CC-CcEEEEEEcCCHH
Confidence 699999999999999533321 1211 1123356788888887776554111 1 11 2357889999666
Q ss_pred HH---HHHHHHCCCeEEeeCCCceEEEEEcCCCCeEEEE
Q 029285 157 KL---KMILDKAGISYTLSKSGRPAIFTRDPDANALEFT 192 (196)
Q Consensus 157 ~~---~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~iEl~ 192 (196)
++ +++|.+.|- +....-.+.|..|..|.|+
T Consensus 84 e~~~~f~~Ls~gG~------~~~~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 84 EIDRIFDKLSEGGQ------WFSRYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHHHHTTTE------TCCEEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHHcCCC------ccceeEEEEeCCCCEEEeC
Confidence 54 677777774 3337789999999999885
No 102
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=97.31 E-value=0.0038 Score=52.68 Aligned_cols=117 Identities=13% Similarity=0.078 Sum_probs=78.1
Q ss_pred CCCCCCceeceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEE-eCCeEEEEEecCCCCCCCCCCCCCC
Q 029285 65 DSDKIDYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLW-VGAEMIHLMELPNPDPLSGRPEHGG 143 (196)
Q Consensus 65 ~~~~~~~~i~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~-~g~~~l~l~~~~~~~~~~~~p~~~~ 143 (196)
....+|+...++.+|.++|.|.+.+..=|-..|||+...+.... .+.+. -|+..+.+-..+.+........+|+
T Consensus 12 ~~~~~P~~~~GfeFvEf~~~d~~~~l~~l~~~lGF~~~~~Hrsk-----~v~l~rQGdinlvvn~~~~s~a~~f~~~Hgp 86 (363)
T COG3185 12 DTLANPEGTDGFEFVEFAVPDPQEALGALLGQLGFTAVAKHRSK-----AVTLYRQGDINLVVNAEPDSFAAEFLDKHGP 86 (363)
T ss_pred ccccCCCCCCceeEEEEecCCHHHHHHHHHHHhCcccccccccc-----ceeEEEeCCEEEEEcCCCcchhhHHHHhcCC
Confidence 34456777889999999999995444445555999988754432 23343 3554444443333211111245777
Q ss_pred CceEEEEEECCHHHHHHHHHHCCCeEEeeC-------------CCceEEEEEcCCC
Q 029285 144 RDRHTCIAIRDVSKLKMILDKAGISYTLSK-------------SGRPAIFTRDPDA 186 (196)
Q Consensus 144 ~~~hi~f~v~dl~~~~~~l~~~G~~~~~~~-------------~g~~~~~~~DPdG 186 (196)
...-++|.|+|...++++..+.|.+....+ .|+..+|+.|.+|
T Consensus 87 s~~a~a~~V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~~ 142 (363)
T COG3185 87 SACAMAFRVDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRYG 142 (363)
T ss_pred chheeEEeeCCHHHHHHHHHHcCCccccCCCCCccccccceeccCCcEEEEeccCC
Confidence 888999999999999999999998542221 3567788888873
No 103
>PF15067 FAM124: FAM124 family
Probab=97.10 E-value=0.0038 Score=49.86 Aligned_cols=103 Identities=19% Similarity=0.276 Sum_probs=62.6
Q ss_pred eeeEEEEEcC--CHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEe---CCeEEEEEecCCCCCCCCCCCCCCCceEEE
Q 029285 75 SVHHVGILCE--NLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV---GAEMIHLMELPNPDPLSGRPEHGGRDRHTC 149 (196)
Q Consensus 75 ~l~hv~l~v~--Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~---g~~~l~l~~~~~~~~~~~~p~~~~~~~hi~ 149 (196)
.+-.+.|+|+ |.+.++.||+-+|+-+...+.+ ++ +|+.. .+..+.|.-...+......|. ...-+.
T Consensus 128 EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~--~F----C~F~lys~~~~~iQlsLK~lp~~~~p~p~---esavLq 198 (236)
T PF15067_consen 128 EILRFTLYCSFDNYEDMVRFYELILQREPTQQKE--DF----CFFTLYSQPGLDIQLSLKQLPPGMSPEPT---ESAVLQ 198 (236)
T ss_pred cEEEEEEEecCCCHHHHHHHHHHHhccCcceeeC--Cc----EEEEEecCCCeEEEEEeccCCCCCCcccc---cceEEE
Confidence 4567889999 9999999999999988765443 21 44433 233444443322211111122 223599
Q ss_pred EEECCHHHHHHHHHHCCCeEEeeCCCceEEEEEcCCCCeEEE
Q 029285 150 IAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEF 191 (196)
Q Consensus 150 f~v~dl~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~iEl 191 (196)
|.|.|+.+++-.|-.--..|... .--+.|||||.|-+
T Consensus 199 F~V~~igqLvpLLPnpc~PIS~~-----rWqT~D~DGNkILL 235 (236)
T PF15067_consen 199 FRVEDIGQLVPLLPNPCSPISET-----RWQTEDYDGNKILL 235 (236)
T ss_pred EEecchhhhcccCCCCcccccCC-----cceeeCCCCCEecc
Confidence 99999999865443333222222 24579999999854
No 104
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=96.31 E-value=0.0031 Score=52.56 Aligned_cols=124 Identities=16% Similarity=0.123 Sum_probs=80.7
Q ss_pred ceeceeeEEEEEcC--CHHHHHHHHHhccCCEEeeecCCCCCCce-----eEEEEeCCeEEEEEecC-CCCCCC-C----
Q 029285 71 YGVVSVHHVGILCE--NLERSLEFYQNILGLEINEARPHDKLPYR-----GAWLWVGAEMIHLMELP-NPDPLS-G---- 137 (196)
Q Consensus 71 ~~i~~l~hv~l~v~--Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~-----~~~l~~g~~~l~l~~~~-~~~~~~-~---- 137 (196)
+.+.+++|+...++ .++.+..||.+.|||..-+..++...... ..-+......+.+.... .+.... .
T Consensus 174 ~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vlan~~esi~mpinEp~~G~k~ksQIqe 253 (381)
T KOG0638|consen 174 GGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLANYEESIKMPINEPAPGKKKKSQIQE 253 (381)
T ss_pred cceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHhcCCccEEEeccCCCCCCccHHHHHH
Confidence 55789999999999 78899999999999998776654432211 11122223333322111 111110 1
Q ss_pred --CCCCCCCceEEEEEECCHHHHHHHHHHCCCeEEeeCC-------------------C------ceEEEEEcCCCCeEE
Q 029285 138 --RPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSKS-------------------G------RPAIFTRDPDANALE 190 (196)
Q Consensus 138 --~p~~~~~~~hi~f~v~dl~~~~~~l~~~G~~~~~~~~-------------------g------~~~~~~~DPdG~~iE 190 (196)
....|+|..||++.++|+-++.+.|+++|.++..+|. . -....=.|-.|+.+.
T Consensus 254 yv~y~gG~GvQHiaL~tedIi~Ai~~lr~rG~eFLs~Ps~YYqnl~erl~~~~~~vked~~~l~el~ILvD~De~gyLLQ 333 (381)
T KOG0638|consen 254 YVEYHGGAGVQHIALNTEDIIEAIRGLRARGGEFLSPPSTYYQNLKERLSTSIRKVKEDIKLLEELGILVDFDENGYLLQ 333 (381)
T ss_pred HHHhcCCCceeeeeecchHHHHHHHHHHhcCCccccCCHHHHHhHHHHhhhhhhhhhccHHHHHHcCeEEecCCCcEEee
Confidence 1235778999999999999999999999999864331 0 122333577899988
Q ss_pred EEee
Q 029285 191 FTQV 194 (196)
Q Consensus 191 l~e~ 194 (196)
|+.-
T Consensus 334 IFTK 337 (381)
T KOG0638|consen 334 IFTK 337 (381)
T ss_pred eecc
Confidence 8753
No 105
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=95.88 E-value=0.044 Score=38.44 Aligned_cols=50 Identities=18% Similarity=0.122 Sum_probs=39.4
Q ss_pred eEEEEEECCHHHHHHHHHH-CCCeEEee----CCCceEEEEEcCCC-CeEEEEeec
Q 029285 146 RHTCIAIRDVSKLKMILDK-AGISYTLS----KSGRPAIFTRDPDA-NALEFTQVD 195 (196)
Q Consensus 146 ~hi~f~v~dl~~~~~~l~~-~G~~~~~~----~~g~~~~~~~DPdG-~~iEl~e~~ 195 (196)
+|++|.|+|++++.+.+.+ .|+..... ..+.+..++..++| ..|||.++.
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~ 56 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPL 56 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEES
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeC
Confidence 5999999999999999998 89765432 23456778888888 689999875
No 106
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=95.22 E-value=0.061 Score=37.69 Aligned_cols=91 Identities=19% Similarity=0.266 Sum_probs=43.1
Q ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEEC-
Q 029285 75 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR- 153 (196)
Q Consensus 75 ~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v~- 153 (196)
.+..+.|.|.| +++++||+++||-.+. ..+.+.+..+++-... +...=+.-.+-|.|+
T Consensus 5 ~~e~i~LNV~d-~~~~~fy~~~f~~~~~-------------------~~l~f~ea~G~DL~~~-~~~twDLe~Lkf~V~~ 63 (101)
T PF14507_consen 5 EFESIELNVPD-AKSQSFYQSIFGGQLP-------------------FFLTFQEAQGPDLTIE-NNETWDLEMLKFQVPK 63 (101)
T ss_dssp EE-EEEEEE-T--T---S--H---HHHT-------------------TTEEEEE---CCGSS--TTSBSSEEEEEEEES-
T ss_pred EEEEEEEeCCC-hhHHHHHHhccccCCC-------------------ceEEEeeccCCccccC-CCcEEeeEEEEEEecC
Confidence 35678999999 8899999998862211 2244444444332221 112224557888888
Q ss_pred --CHHHHHHHHHHCCCeEEeeCCCceEEEEEcCCCCeE
Q 029285 154 --DVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANAL 189 (196)
Q Consensus 154 --dl~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~i 189 (196)
|+..+.+++.+.++ -. +...+.+-+.||.|..|
T Consensus 64 ~~Dl~~L~~~le~~~~--fi-dKk~k~l~~~Dps~IEl 98 (101)
T PF14507_consen 64 DFDLAALKSHLEEQEF--FI-DKKEKFLVTSDPSQIEL 98 (101)
T ss_dssp S--HHHHHHHTTTS-E--E---TT-SEEEEE-TTS-EE
T ss_pred cccHHHHHHHhcccce--Ee-cCCceEEEEECCcceEE
Confidence 77888999988432 22 23367788999998766
No 107
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=94.17 E-value=0.23 Score=37.55 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=39.9
Q ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEe-CCeEEEEEe
Q 029285 74 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLME 128 (196)
Q Consensus 74 ~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~-g~~~l~l~~ 128 (196)
.+++||+|.|+|++++..-+++ +|.+...+.++... ...+|+.. ++..+++..
T Consensus 114 rGfgHIci~V~di~sac~~lke-kGV~f~Kk~~dGk~-K~iaF~~dpDgywiei~~ 167 (170)
T KOG2944|consen 114 RGFGHICIEVDDINSACERLKE-KGVRFKKKLKDGKM-KPIAFLHDPDGYWIEIEL 167 (170)
T ss_pred CccceEEEEeCCHHHHHHHHHH-hCceeeecCCCccc-cceeEEECCCCCeEEEee
Confidence 6899999999999999999999 99997766554443 34566654 355666653
No 108
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=93.70 E-value=0.28 Score=35.52 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=38.6
Q ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEe-CCeEEEEEe
Q 029285 74 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLME 128 (196)
Q Consensus 74 ~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~-g~~~l~l~~ 128 (196)
.++.|+++.|.|++++.+-..+ .|.++...........+.+|+.. +|..++|++
T Consensus 86 ~g~~hia~~v~d~d~~~~~l~~-~G~~~~~~~~~~~~~~r~~~~~DPdG~~iEl~e 140 (142)
T cd08353 86 LGLRRVMFAVDDIDARVARLRK-HGAELVGEVVQYENSYRLCYIRGPEGILIELAE 140 (142)
T ss_pred CCceEEEEEeCCHHHHHHHHHH-CCCceeCCceecCCCeEEEEEECCCCCEEEeee
Confidence 4688999999999999999998 89988753222222345555654 356777775
No 109
>PLN02367 lactoylglutathione lyase
Probab=92.28 E-value=0.86 Score=36.86 Aligned_cols=56 Identities=21% Similarity=0.361 Sum_probs=41.9
Q ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEe-CCeEEEEEecCC
Q 029285 74 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPN 131 (196)
Q Consensus 74 ~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~-g~~~l~l~~~~~ 131 (196)
.+++|+++.|.|++++.+-..+ .|.++... +......+.+|+.. +|..++|++...
T Consensus 168 ~G~~HIaf~VdDVdaa~erL~a-~Gv~~v~~-P~~g~~~riaFIkDPDGn~IEL~e~~~ 224 (233)
T PLN02367 168 RGFGHIGITVDDVYKACERFEE-LGVEFVKK-PNDGKMKGIAFIKDPDGYWIEIFDLKT 224 (233)
T ss_pred CCceEEEEEcCCHHHHHHHHHH-CCCEEEeC-CccCCceEEEEEECCCCCEEEEEeccc
Confidence 4899999999999999999988 99999853 32222234566654 467899987654
No 110
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=92.14 E-value=0.79 Score=32.04 Aligned_cols=53 Identities=19% Similarity=0.321 Sum_probs=35.3
Q ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeeecC-CCCCCceeEEEEeC---CeEEEEE
Q 029285 74 VSVHHVGILCENLERSLEFYQNILGLEINEARP-HDKLPYRGAWLWVG---AEMIHLM 127 (196)
Q Consensus 74 ~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~-~~~~~~~~~~l~~g---~~~l~l~ 127 (196)
.++.|+++.|.|++++.+...+ .|.++..... .........|+..+ |..++++
T Consensus 71 ~g~~h~~f~v~d~~~~~~~l~~-~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~ 127 (128)
T cd07249 71 EGLHHIAFEVDDIDAALARLKA-QGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELV 127 (128)
T ss_pred CceEEEEEEeCCHHHHHHHHHH-CCCeeeccCCCccCCCCEEEEEecCCCceEEEEec
Confidence 5688999999999999999988 7998876432 12222333444444 4455554
No 111
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=91.18 E-value=1.4 Score=31.81 Aligned_cols=58 Identities=12% Similarity=0.015 Sum_probs=43.4
Q ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEe-CCeEEEEEecCCC
Q 029285 74 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNP 132 (196)
Q Consensus 74 ~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~-g~~~l~l~~~~~~ 132 (196)
.++.|+++.|.|++++.+-.++ .|.++...........+.+++.. +|..++|++....
T Consensus 68 ~g~~hia~~V~Dvda~~~~l~~-~G~~v~~~p~~~~~~~~~~~i~dp~G~~ie~~~~~~~ 126 (136)
T cd08342 68 DGVCDVAFRVDDAAAAYERAVA-RGAKPVQEPVEEPGELKIAAIKGYGDSLHTLVDRKGY 126 (136)
T ss_pred CceEEEEEEeCCHHHHHHHHHH-cCCeEccCceecCCeEEEEEEeccCCcEEEEEecCCC
Confidence 4688999999999999999988 89999864333234456667765 4678999986544
No 112
>PRK11478 putative lyase; Provisional
Probab=90.79 E-value=1.7 Score=30.56 Aligned_cols=54 Identities=9% Similarity=0.174 Sum_probs=36.0
Q ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEe-CCeEEEEEe
Q 029285 74 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLME 128 (196)
Q Consensus 74 ~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~-g~~~l~l~~ 128 (196)
.++.|+++.|.|++++.+-..+ .|.++.........+.+.+|+.. +|..+++++
T Consensus 74 ~g~~hi~f~v~d~~~~~~~l~~-~G~~~~~~~~~~~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 74 CGLRHLAFSVDDIDAAVAHLES-HNVKCEAIRVDPYTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred CceeEEEEEeCCHHHHHHHHHH-cCCeeeccccCCCCCCEEEEEECCCCCEEEEEe
Confidence 4678999999999999998877 89987643222222234455543 355677664
No 113
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=90.49 E-value=1.6 Score=32.81 Aligned_cols=51 Identities=10% Similarity=0.087 Sum_probs=34.8
Q ss_pred CceEEEEEECCHHHHHHHHHH-CCCeEEeeCCCceEEEEEc-CCCCeEEEEee
Q 029285 144 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRD-PDANALEFTQV 194 (196)
Q Consensus 144 ~~~hi~f~v~dl~~~~~~l~~-~G~~~~~~~~g~~~~~~~D-PdG~~iEl~e~ 194 (196)
|++|+++.|+|+++..+...+ .|.++.....+...++..+ .+|..++|.+.
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 53 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEGDRVRLEEGGGGPGAVVDVLEE 53 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeCCEEEEEecCCCCCCEEEEEeC
Confidence 468999999999999999876 5887755433322222222 24788888764
No 114
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=89.95 E-value=2.8 Score=28.86 Aligned_cols=50 Identities=18% Similarity=0.049 Sum_probs=35.7
Q ss_pred CceEEEEEECCHHHHHHHHH-HCCCeEEeeC---C-CceEEEEEcCCCCeEEEEe
Q 029285 144 RDRHTCIAIRDVSKLKMILD-KAGISYTLSK---S-GRPAIFTRDPDANALEFTQ 193 (196)
Q Consensus 144 ~~~hi~f~v~dl~~~~~~l~-~~G~~~~~~~---~-g~~~~~~~DPdG~~iEl~e 193 (196)
++.|+++.|.|++++.+.+. ..|..+.... . ....+.+..+++..+++..
T Consensus 3 ~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~ 57 (125)
T cd08352 3 GIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNGGYQLELFS 57 (125)
T ss_pred ccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCCCcEEEEEE
Confidence 56899999999999999987 4898875432 1 1233445556677777765
No 115
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=89.80 E-value=1.4 Score=29.35 Aligned_cols=40 Identities=18% Similarity=0.225 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHCCCeEEe---eCCCceEEEEEcCCCCeEEEEe
Q 029285 154 DVSKLKMILDKAGISYTL---SKSGRPAIFTRDPDANALEFTQ 193 (196)
Q Consensus 154 dl~~~~~~l~~~G~~~~~---~~~g~~~~~~~DPdG~~iEl~e 193 (196)
..+++.+.+++.|+.+.. +.+|.+.+...|.||+.+|+.=
T Consensus 30 ~~~~~~~~l~~~G~~v~~ve~~~~g~yev~~~~~dG~~~ev~v 72 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREVEFDDDGCYEVEARDKDGKKVEVYV 72 (83)
T ss_pred CHHHHHHHHHhcCCceEEEEEcCCCEEEEEEEECCCCEEEEEE
Confidence 789999999999997643 2456788999999999999864
No 116
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=88.72 E-value=2.9 Score=32.55 Aligned_cols=56 Identities=21% Similarity=0.356 Sum_probs=39.9
Q ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEe-CCeEEEEEecCC
Q 029285 74 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPN 131 (196)
Q Consensus 74 ~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~-g~~~l~l~~~~~ 131 (196)
.++.|+++.|.|++++.+...+ .|+.+... +......+.+|+.. +|..++|++...
T Consensus 120 ~G~~Hlaf~V~Dvd~~~~~L~~-~Gv~v~~~-p~~~~~~~~~fi~DPdG~~IEl~e~~~ 176 (185)
T PLN03042 120 RGFGHIGITVDDVYKACERFEK-LGVEFVKK-PDDGKMKGLAFIKDPDGYWIEIFDLKR 176 (185)
T ss_pred CCccEEEEEcCCHHHHHHHHHH-CCCeEEeC-CccCCceeEEEEECCCCCEEEEEECCC
Confidence 4799999999999999999998 99988743 22221223455543 467888887544
No 117
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=88.66 E-value=2.5 Score=29.64 Aligned_cols=50 Identities=14% Similarity=0.164 Sum_probs=33.4
Q ss_pred CceEEEEEECCHHHHHHHHHHC----CCeEEeeCCCceEEEEEcCCCCeEEEEee
Q 029285 144 RDRHTCIAIRDVSKLKMILDKA----GISYTLSKSGRPAIFTRDPDANALEFTQV 194 (196)
Q Consensus 144 ~~~hi~f~v~dl~~~~~~l~~~----G~~~~~~~~g~~~~~~~DPdG~~iEl~e~ 194 (196)
++.|+++.|+|++++.+.+.+. |.+......+ ...|+...++..+++.+.
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~~-~~~~~~~~~~~~i~l~~~ 54 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWED-GRSWRAGDGGTYLVLQQA 54 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeecc-CceEEecCCceEEEEEec
Confidence 3579999999999998888775 8877554322 223333344566666654
No 118
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=88.65 E-value=8.5 Score=28.87 Aligned_cols=73 Identities=16% Similarity=0.143 Sum_probs=46.4
Q ss_pred eeEEEEEcCCHHHHHHHHHhccCCEEeee-cCCCCCCceeEE------EEeCCeEEEEEecCCCCCCCCCCCCCCCceEE
Q 029285 76 VHHVGILCENLERSLEFYQNILGLEINEA-RPHDKLPYRGAW------LWVGAEMIHLMELPNPDPLSGRPEHGGRDRHT 148 (196)
Q Consensus 76 l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~-~~~~~~~~~~~~------l~~g~~~l~l~~~~~~~~~~~~p~~~~~~~hi 148 (196)
++|++|+|++.+.+.+|-+..+..-.... ..-.+. ..+- +.+++..+..++.+-+... .+.+ .|.-||
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~INGR--PI~l~~L~qPl~~~~~~I~cvELP~P~~k--~Yp~-eGWEHI 76 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENEINGR--PIALIKLEKPLQFAGWSISIVELPFPKDK--KYPQ-EGWEHI 76 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhccccCCe--eEEEEEcCCCceeCCcEEEEEEeCCCCCC--CCCC-CCceEE
Confidence 58999999999999999988764432221 111111 1122 4456778888888766432 2222 356799
Q ss_pred EEEEC
Q 029285 149 CIAIR 153 (196)
Q Consensus 149 ~f~v~ 153 (196)
-+.++
T Consensus 77 E~Vlp 81 (149)
T cd07268 77 EIVIP 81 (149)
T ss_pred EEEec
Confidence 99988
No 119
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=88.50 E-value=5.1 Score=31.23 Aligned_cols=77 Identities=19% Similarity=0.141 Sum_probs=43.1
Q ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeee-cCCCCCCcee----EEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEE
Q 029285 74 VSVHHVGILCENLERSLEFYQNILGLEINEA-RPHDKLPYRG----AWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHT 148 (196)
Q Consensus 74 ~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~-~~~~~~~~~~----~~l~~g~~~l~l~~~~~~~~~~~~p~~~~~~~hi 148 (196)
..++|++++|++.+.+.+|-+..+..-..-. ..-.+.+... .=+.+++..+.+++.+-+... .+.+ .|.-||
T Consensus 33 ~~~DHialRvn~~~~A~~~~~~l~~~G~llSen~INGRPI~l~~L~qPL~~~~~~I~~vELP~P~~K--~Yp~-eGWEHI 109 (185)
T PF06185_consen 33 YEIDHIALRVNSNETAERWKQALLQCGELLSENMINGRPICLFKLNQPLQFGGWSIDCVELPYPKDK--RYPQ-EGWEHI 109 (185)
T ss_dssp -EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEE---SS----SS--EEEEE
T ss_pred cCCcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCCeeEEEEEcCCchhcCCeeEEEEEeCCCCCC--CCCC-CCceEE
Confidence 4689999999999999999999876643321 1111111100 114567888999988766431 2222 366799
Q ss_pred EEEEC
Q 029285 149 CIAIR 153 (196)
Q Consensus 149 ~f~v~ 153 (196)
-|.++
T Consensus 110 E~Vip 114 (185)
T PF06185_consen 110 EFVIP 114 (185)
T ss_dssp EEE--
T ss_pred EEEec
Confidence 99998
No 120
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=87.72 E-value=3.6 Score=30.91 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=37.6
Q ss_pred CceEEEEEECCHHHHHHHHHH-CCCeEEee-----C----C--------C-----ceEEEEEcCCCCeEEEEeec
Q 029285 144 RDRHTCIAIRDVSKLKMILDK-AGISYTLS-----K----S--------G-----RPAIFTRDPDANALEFTQVD 195 (196)
Q Consensus 144 ~~~hi~f~v~dl~~~~~~l~~-~G~~~~~~-----~----~--------g-----~~~~~~~DPdG~~iEl~e~~ 195 (196)
++.|+++.|.|+++..+..++ .|.++... . . | ....++..++|..||+.+.+
T Consensus 4 ~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~ 78 (162)
T TIGR03645 4 TFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFK 78 (162)
T ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEecc
Confidence 578999999999999999876 68766311 0 0 1 23456666778889999864
No 121
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=87.30 E-value=3 Score=27.53 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=36.5
Q ss_pred EEEEEECCHHHHHHHHHH-CCCeEEeeCC--CceEEEEEcCCCCeEEEEeec
Q 029285 147 HTCIAIRDVSKLKMILDK-AGISYTLSKS--GRPAIFTRDPDANALEFTQVD 195 (196)
Q Consensus 147 hi~f~v~dl~~~~~~l~~-~G~~~~~~~~--g~~~~~~~DPdG~~iEl~e~~ 195 (196)
|+.+.++|+++..+.+.+ .|.+...... +....++.++ +..++|.+.+
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~-~~~i~l~~~~ 51 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGNGGAEFAVLGLG-GTRLELFEGD 51 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeeccCCEEEEEEecC-CceEEEecCC
Confidence 788999999999999987 9988766553 3455666655 7888887754
No 122
>PRK10291 glyoxalase I; Provisional
Probab=87.30 E-value=4.1 Score=28.86 Aligned_cols=57 Identities=16% Similarity=0.132 Sum_probs=39.0
Q ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeeec-CCCCCCceeEEEEe-CCeEEEEEecCC
Q 029285 74 VSVHHVGILCENLERSLEFYQNILGLEINEAR-PHDKLPYRGAWLWV-GAEMIHLMELPN 131 (196)
Q Consensus 74 ~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~-~~~~~~~~~~~l~~-g~~~l~l~~~~~ 131 (196)
.++.|+++.|.|++++.+-.++ .|.++.... +........+|+.. +|..++|++...
T Consensus 64 ~~~~hlaf~V~d~~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~ 122 (129)
T PRK10291 64 TAYGHIALSVDNAAEACEKIRQ-NGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKD 122 (129)
T ss_pred CCeeEEEEEeCCHHHHHHHHHH-cCCccccCCcccCCCceEEEEEECCCCCEEEEEEccc
Confidence 3688999999999999998887 898876421 22122223455543 467899988653
No 123
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=86.90 E-value=2.7 Score=29.32 Aligned_cols=53 Identities=25% Similarity=0.385 Sum_probs=34.1
Q ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCC-CCceeEEEE---eCCeEEEEE
Q 029285 74 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDK-LPYRGAWLW---VGAEMIHLM 127 (196)
Q Consensus 74 ~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~-~~~~~~~l~---~g~~~l~l~ 127 (196)
.++.|+++.|.|++++.+.... .|.++....+... .+.+.+|+. .+|..++++
T Consensus 71 ~g~~~i~~~v~di~~~~~~l~~-~G~~~~~~~~~~~~~g~~~~~~~~~dp~G~~~E~~ 127 (128)
T TIGR03081 71 GGIHHIAIEVDDIEAALETLKE-KGVRLIDEEPRIGAGGKPVAFLHPKSTGGVLIELE 127 (128)
T ss_pred CceEEEEEEcCCHHHHHHHHHH-CCCcccCCCCccCCCCCEEEEecccccCcEEEEec
Confidence 4678999999999999998877 7888765322221 122334552 245555554
No 124
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=86.65 E-value=4.4 Score=27.98 Aligned_cols=51 Identities=18% Similarity=0.228 Sum_probs=35.8
Q ss_pred CceEEEEEECCHHHHHHHHHH-CCCeEEeeC---C--CceEEEEEcC---CCCeEEEEee
Q 029285 144 RDRHTCIAIRDVSKLKMILDK-AGISYTLSK---S--GRPAIFTRDP---DANALEFTQV 194 (196)
Q Consensus 144 ~~~hi~f~v~dl~~~~~~l~~-~G~~~~~~~---~--g~~~~~~~DP---dG~~iEl~e~ 194 (196)
++.|+++.|+|++++.+...+ .|.+..... . +...+++.+. .|..++|.+.
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 60 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEW 60 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEec
Confidence 357999999999999999876 688765432 1 1234555554 5677888764
No 125
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=86.04 E-value=3.2 Score=27.84 Aligned_cols=50 Identities=12% Similarity=0.143 Sum_probs=33.3
Q ss_pred ceEEEEEECCHHHHHHHHH-HCCCeEEeeCCC-ceEEEEEcCCCCeEEEEee
Q 029285 145 DRHTCIAIRDVSKLKMILD-KAGISYTLSKSG-RPAIFTRDPDANALEFTQV 194 (196)
Q Consensus 145 ~~hi~f~v~dl~~~~~~l~-~~G~~~~~~~~g-~~~~~~~DPdG~~iEl~e~ 194 (196)
++|+++.|+|++++.+... -.|......... ....++..+++..++|.+.
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~i~l~~~ 52 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFLFPGAWLYAGDGPQLHLIEE 52 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCCCCceEEEeCCCcEEEEEec
Confidence 3699999999999988875 677765433221 2334555555556777654
No 126
>PRK11700 hypothetical protein; Provisional
Probab=86.01 E-value=9.8 Score=29.67 Aligned_cols=76 Identities=21% Similarity=0.205 Sum_probs=48.1
Q ss_pred eceeeEEEEEcCCHHHHHHHHHhccCCEEee-ecCCCCCCceeEE------EEeCCeEEEEEecCCCCCCCCCCCCCCCc
Q 029285 73 VVSVHHVGILCENLERSLEFYQNILGLEINE-ARPHDKLPYRGAW------LWVGAEMIHLMELPNPDPLSGRPEHGGRD 145 (196)
Q Consensus 73 i~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~-~~~~~~~~~~~~~------l~~g~~~l~l~~~~~~~~~~~~p~~~~~~ 145 (196)
-...+|++++|++.+.|.+|-+..+..-..- ...-.+. ..+- +.+++..+..++.+-+... .+.+ .|.
T Consensus 37 ~~~~DHialR~n~~~tAe~w~~~l~~~G~llSen~INGR--PI~l~~L~qPl~~~~w~I~cvELP~P~~k--~Yp~-eGW 111 (187)
T PRK11700 37 QLEADHIALRCNQNETAERWRQGFLQCGELLSENIINGR--PICLFELDQPLQVGHWSIDCVELPYPGEK--RYPH-EGW 111 (187)
T ss_pred cccCcEEEEeeCCHHHHHHHHHHHHHhchhhhccccCCe--eEEEEEcCCCceeCCcEEEEEEeCCCCCC--CCCC-CCc
Confidence 3467999999999999999988866442221 1111111 1222 4456778888888766432 2222 356
Q ss_pred eEEEEEEC
Q 029285 146 RHTCIAIR 153 (196)
Q Consensus 146 ~hi~f~v~ 153 (196)
-||-+.++
T Consensus 112 EHIElVlp 119 (187)
T PRK11700 112 EHIELVLP 119 (187)
T ss_pred eEEEEEec
Confidence 79999988
No 127
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=85.47 E-value=4.8 Score=27.69 Aligned_cols=50 Identities=24% Similarity=0.279 Sum_probs=34.7
Q ss_pred ceEEEEEECCHHHHHHHHHH-CCCeEEeeC--C--CceEEEEEcCC---CCeEEEEee
Q 029285 145 DRHTCIAIRDVSKLKMILDK-AGISYTLSK--S--GRPAIFTRDPD---ANALEFTQV 194 (196)
Q Consensus 145 ~~hi~f~v~dl~~~~~~l~~-~G~~~~~~~--~--g~~~~~~~DPd---G~~iEl~e~ 194 (196)
+.|+++.|+|++++.+...+ .|.+..... . +...+++..++ +..+++.+.
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 58 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYN 58 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEec
Confidence 36999999999999999976 498875432 2 22335555554 567877653
No 128
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=85.43 E-value=3.6 Score=28.61 Aligned_cols=46 Identities=15% Similarity=0.248 Sum_probs=29.5
Q ss_pred eEEEEEECCHHHHHHHHHHCCCeEEeeCCCceEEEEEcCCCCeEEE
Q 029285 146 RHTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEF 191 (196)
Q Consensus 146 ~hi~f~v~dl~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~iEl 191 (196)
.|+.+.|+|+++..+..++.|.++.....+...+.+..++|..+.+
T Consensus 2 ~~i~l~V~D~~~a~~FY~~LGf~~~~~~~~~~~~~~~~~~~~~l~l 47 (122)
T cd07235 2 DAVGIVVADMAKSLDFYRRLGFDFPEEADDEPHVEAVLPGGVRLAW 47 (122)
T ss_pred ceEEEEeccHHHHHHHHHHhCceecCCcCCCCcEEEEeCCCEEEEE
Confidence 5899999999999998887888764332211223344444444433
No 129
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=84.95 E-value=7.5 Score=27.48 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=34.3
Q ss_pred ceEEEEEECCHHHHHHHHHH-CCCeEEeeCCCceEEEEEcC--CCCeEEEEee
Q 029285 145 DRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDP--DANALEFTQV 194 (196)
Q Consensus 145 ~~hi~f~v~dl~~~~~~l~~-~G~~~~~~~~g~~~~~~~DP--dG~~iEl~e~ 194 (196)
+.|+.+.|.|++++.+...+ .|.++.....+....++..+ .+..+.+.+.
T Consensus 2 i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 54 (134)
T cd08348 2 LSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPLGGLVFLSRDPDEHHQIALITG 54 (134)
T ss_pred eeEEEEEecCHHHHHHHHHHhcCCEEEeeccCCcEEEEEecCCCceEEEEEec
Confidence 57999999999999999876 88887654432234454443 3456766553
No 130
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=84.55 E-value=7.3 Score=26.80 Aligned_cols=50 Identities=20% Similarity=0.227 Sum_probs=33.7
Q ss_pred ceEEEEEECCHHHHHHHHHH-CCCeEEee---C-CCceEEEEEcCCCCeEEEEee
Q 029285 145 DRHTCIAIRDVSKLKMILDK-AGISYTLS---K-SGRPAIFTRDPDANALEFTQV 194 (196)
Q Consensus 145 ~~hi~f~v~dl~~~~~~l~~-~G~~~~~~---~-~g~~~~~~~DPdG~~iEl~e~ 194 (196)
++|+++.|+|+++..+...+ .|.++... + .+....|+.-.+|..+++.+.
T Consensus 2 ~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 56 (125)
T cd07241 2 IEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDDGARLELMTR 56 (125)
T ss_pred ceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCCCcEEEEEcC
Confidence 57999999999999988876 57765321 1 233344454446777888753
No 131
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=82.98 E-value=5.5 Score=26.82 Aligned_cols=54 Identities=19% Similarity=0.182 Sum_probs=34.9
Q ss_pred eceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEe-CCeEEEEE
Q 029285 73 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLM 127 (196)
Q Consensus 73 i~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~-g~~~l~l~ 127 (196)
..+..|+.+.|.|++++.+...+ +|.++.........+.+..++.- +|..++++
T Consensus 54 ~~~~~~~~~~v~dv~~~~~~l~~-~G~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 54 PGGGFHLCFEVEDVDALYERLKE-LGAEIVTEPRDDPWGQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp SSSEEEEEEEESHHHHHHHHHHH-TTSEEEEEEEEETTSEEEEEEE-TTS-EEEEE
T ss_pred CCceeEEEEEEcCHHHHHHHHHH-CCCeEeeCCEEcCCCeEEEEEECCCCCEEEeC
Confidence 34678999999999999999998 89997653322222334444443 35555553
No 132
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=82.74 E-value=5.7 Score=26.94 Aligned_cols=31 Identities=13% Similarity=0.225 Sum_probs=26.5
Q ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeeec
Q 029285 74 VSVHHVGILCENLERSLEFYQNILGLEINEAR 105 (196)
Q Consensus 74 ~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~ 105 (196)
.+..|+.+.|.|++++.+--.+ .|+++....
T Consensus 66 ~~~~~~~~~v~di~~~~~~l~~-~g~~~~~~~ 96 (119)
T cd07263 66 GGTPGLVLATDDIDATYEELKA-RGVEFSEEP 96 (119)
T ss_pred CCceEEEEEehHHHHHHHHHHh-CCCEEeecc
Confidence 4678999999999999999987 899887543
No 133
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=82.50 E-value=9.1 Score=26.51 Aligned_cols=48 Identities=8% Similarity=0.095 Sum_probs=33.1
Q ss_pred CceEEEEEECCHHHHHHHHHH-CCCeEEeeCCCceEEEEEcCC-CCeEEEEe
Q 029285 144 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDPD-ANALEFTQ 193 (196)
Q Consensus 144 ~~~hi~f~v~dl~~~~~~l~~-~G~~~~~~~~g~~~~~~~DPd-G~~iEl~e 193 (196)
.+.|+.+.|+|+++..+...+ .|.++..... ..+++..++ +..+.|.+
T Consensus 2 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~--~~~~l~~~~~~~~l~l~~ 51 (125)
T cd07255 2 RIGAVTLRVADLERSLAFYQDVLGLEVLERTD--STAVLGTGGKRPLLVLEE 51 (125)
T ss_pred EEEEEEEEECCHHHHHHHHHhccCcEEEEcCC--CEEEEecCCCeEEEEEEe
Confidence 467999999999999998875 7888765532 234444443 45566654
No 134
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=80.96 E-value=9.7 Score=26.54 Aligned_cols=48 Identities=10% Similarity=0.059 Sum_probs=31.6
Q ss_pred CceEEEEEECCHHHHHHHHHH-CCCeEEeeCCCceEEEEEcC-CCCeEEEE
Q 029285 144 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDP-DANALEFT 192 (196)
Q Consensus 144 ~~~hi~f~v~dl~~~~~~l~~-~G~~~~~~~~g~~~~~~~DP-dG~~iEl~ 192 (196)
++.|+++.|+|++++.+...+ .|.++.....+ ..+++..+ .+..+.+.
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~~-~~~~~~~~~~~~~~~l~ 51 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRPED-GALYLRMDDRAWRIAVH 51 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCCCC-CeEEEEccCCceEEEEE
Confidence 457999999999999998876 68876544222 23444443 33445554
No 135
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=79.50 E-value=8.9 Score=28.05 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=39.2
Q ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeeecC-CCCCCceeEEEEe-CCeEEEEEecCC
Q 029285 74 VSVHHVGILCENLERSLEFYQNILGLEINEARP-HDKLPYRGAWLWV-GAEMIHLMELPN 131 (196)
Q Consensus 74 ~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~-~~~~~~~~~~l~~-g~~~l~l~~~~~ 131 (196)
.++.|+++.|.|++++.+...+ .|.++..... ........+|+.. +|..++|++...
T Consensus 85 ~g~~hi~f~v~dld~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~ 143 (150)
T TIGR00068 85 NGFGHIAIGVDDVYKACERVRA-LGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKS 143 (150)
T ss_pred CceeEEEEecCCHHHHHHHHHH-cCCccccCCcccCCCceEEEEEECCCCCEEEEEECCc
Confidence 3688999999999999999988 9988764321 1122223455443 467888887543
No 136
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=79.49 E-value=11 Score=25.97 Aligned_cols=49 Identities=12% Similarity=0.124 Sum_probs=30.9
Q ss_pred EEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEe-CCeEEEEE
Q 029285 78 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLM 127 (196)
Q Consensus 78 hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~-g~~~l~l~ 127 (196)
|+.+.|.|+++..+...+ .|.++.........+.+..++.. +|..++++
T Consensus 69 ~~~~~v~did~~~~~l~~-~G~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~ 118 (119)
T cd08359 69 ILNFEVDDVDAEYERLKA-EGLPIVLPLRDEPWGQRHFIVRDPNGVLIDIV 118 (119)
T ss_pred EEEEEECCHHHHHHHHHh-cCCCeeeccccCCCcceEEEEECCCCCEEEEE
Confidence 899999999999999998 78876643221112223344433 34455554
No 137
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=77.22 E-value=19 Score=24.46 Aligned_cols=52 Identities=12% Similarity=0.191 Sum_probs=32.8
Q ss_pred eeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEe-CCeEEEEEe
Q 029285 76 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLME 128 (196)
Q Consensus 76 l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~-g~~~l~l~~ 128 (196)
..|+.+.|.|++++.+-... .|.++.........+.+..++.. +|..+++.+
T Consensus 58 ~~~i~~~v~d~~~~~~~l~~-~G~~~~~~~~~~~~g~~~~~~~DP~Gn~i~~~~ 110 (112)
T cd07238 58 VPDLSIEVDDVDAALARAVA-AGFAIVYGPTDEPWGVRRFFVRDPFGKLVNILT 110 (112)
T ss_pred CCEEEEEeCCHHHHHHHHHh-cCCeEecCCccCCCceEEEEEECCCCCEEEEEE
Confidence 45999999999999998887 89887653221122223333332 355666653
No 138
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=76.98 E-value=12 Score=25.56 Aligned_cols=30 Identities=13% Similarity=0.205 Sum_probs=24.8
Q ss_pred CceEEEEEECCHHHHHHHHHH-CCCeEEeeC
Q 029285 144 RDRHTCIAIRDVSKLKMILDK-AGISYTLSK 173 (196)
Q Consensus 144 ~~~hi~f~v~dl~~~~~~l~~-~G~~~~~~~ 173 (196)
++.|+.+.|+|+++..+..++ .|.......
T Consensus 3 ~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~ 33 (125)
T cd07253 3 RIDHVVLTVADIEATLDFYTRVLGMEVVRFG 33 (125)
T ss_pred ccceEEEEecCHHHHHHHHHHHhCceeeccc
Confidence 568999999999999998887 788775443
No 139
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=76.59 E-value=13 Score=25.67 Aligned_cols=47 Identities=13% Similarity=0.227 Sum_probs=31.0
Q ss_pred eEEEEEECCHHHHHHHHHH----CCCeEEeeCCCceEEEEEcC-CCCeEEEEe
Q 029285 146 RHTCIAIRDVSKLKMILDK----AGISYTLSKSGRPAIFTRDP-DANALEFTQ 193 (196)
Q Consensus 146 ~hi~f~v~dl~~~~~~l~~----~G~~~~~~~~g~~~~~~~DP-dG~~iEl~e 193 (196)
.|+.+.|+|++++.+..++ .|.+......+.. +++..+ .+..+.+..
T Consensus 2 ~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~~~~-~~~~~~~~~~~~~l~~ 53 (123)
T cd07262 2 DHVTLGVNDLERARAFYDAVLAPLGIKRVMEDGPGA-VGYGKGGGGPDFWVTK 53 (123)
T ss_pred cEEEEecCcHHHHHHHHHHHHhhcCceEEeecCCce-eEeccCCCCceEEEec
Confidence 6999999999999888876 4887654432222 334444 345566554
No 140
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=75.48 E-value=17 Score=24.81 Aligned_cols=29 Identities=10% Similarity=0.195 Sum_probs=24.5
Q ss_pred CceEEEEEECCHHHHHHHHHHCCCeEEee
Q 029285 144 RDRHTCIAIRDVSKLKMILDKAGISYTLS 172 (196)
Q Consensus 144 ~~~hi~f~v~dl~~~~~~l~~~G~~~~~~ 172 (196)
++.|+++.|.|++++.+.....|.++...
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~~lG~~~~~~ 30 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYEAFGLDVREE 30 (112)
T ss_pred ceeEEEEecCCHHHHHHHHHHhCCcEEee
Confidence 56899999999999988888889887543
No 141
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=74.33 E-value=18 Score=24.66 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=24.0
Q ss_pred CceEEEEEECCHHHHHHHHHH-CCCeEEee
Q 029285 144 RDRHTCIAIRDVSKLKMILDK-AGISYTLS 172 (196)
Q Consensus 144 ~~~hi~f~v~dl~~~~~~l~~-~G~~~~~~ 172 (196)
+++|+++.|.|++++.+...+ .|.++...
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~ 30 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEE 30 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEee
Confidence 468999999999999998875 88877543
No 142
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=73.37 E-value=26 Score=24.90 Aligned_cols=49 Identities=18% Similarity=0.240 Sum_probs=32.6
Q ss_pred CceEEEEEECCHHHHHHHHHH-CCCeEEeeCCCceEEEEEcCC---CCeEEEEe
Q 029285 144 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDPD---ANALEFTQ 193 (196)
Q Consensus 144 ~~~hi~f~v~dl~~~~~~l~~-~G~~~~~~~~g~~~~~~~DPd---G~~iEl~e 193 (196)
.+.|+++.|+|+++..+..++ .|.++...... ...|++.++ .+.+++.+
T Consensus 3 ~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~~-~~~~~~~~~~~~~~~i~l~~ 55 (134)
T cd08360 3 RLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFKG-RGAFLRAAGGGDHHNLFLIK 55 (134)
T ss_pred eeeEEEEEcCCHHHHHHHHHHhcCCEEEEEecC-cEEEEECCCCCCCcEEEEec
Confidence 578999999999999998865 68877543322 234555432 34666544
No 143
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=72.66 E-value=27 Score=23.65 Aligned_cols=52 Identities=10% Similarity=-0.101 Sum_probs=32.7
Q ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEe-CCeEEEEE
Q 029285 75 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLM 127 (196)
Q Consensus 75 ~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~-g~~~l~l~ 127 (196)
...|+.+.|.|++++.+-... .|.++..............++.. +|..++|+
T Consensus 61 ~~~~~~f~v~di~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~~DPdG~~~~l~ 113 (114)
T cd07247 61 PGWLVYFAVDDVDAAAARVEA-AGGKVLVPPTDIPGVGRFAVFADPEGAVFGLW 113 (114)
T ss_pred CeEEEEEEeCCHHHHHHHHHH-CCCEEEeCCcccCCcEEEEEEECCCCCEEEeE
Confidence 456899999999999998887 79987754322111122333332 35555554
No 144
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=72.43 E-value=22 Score=24.10 Aligned_cols=39 Identities=10% Similarity=0.167 Sum_probs=29.2
Q ss_pred CceEEEEEECCHHHHHHHHHH-CCCeEEeeCCCceEEEEEcC
Q 029285 144 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDP 184 (196)
Q Consensus 144 ~~~hi~f~v~dl~~~~~~l~~-~G~~~~~~~~g~~~~~~~DP 184 (196)
.+.|+.+.|+|+++..+...+ .|.++..... ..++++.+
T Consensus 2 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~--~~~~~~~~ 41 (117)
T cd07240 2 RIAYAELEVPDLERALEFYTDVLGLTVLDRDA--GSVYLRCS 41 (117)
T ss_pred ceeEEEEecCCHHHHHHHHHhccCcEEEeecC--CeEEEecC
Confidence 457999999999999998887 8888765442 23555554
No 145
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=72.36 E-value=24 Score=24.02 Aligned_cols=52 Identities=6% Similarity=-0.091 Sum_probs=32.8
Q ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEe-CCeEEEEE
Q 029285 75 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLM 127 (196)
Q Consensus 75 ~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~-g~~~l~l~ 127 (196)
...|+.+.|.|++++.+-..+ .|.++.........+.+.+++.. .|..++|.
T Consensus 68 ~~~~~~~~v~d~~~~~~~l~~-~G~~~~~~~~~~~~g~~~~~~~DP~G~~~~l~ 120 (122)
T cd07246 68 TPVSLHLYVEDVDATFARAVA-AGATSVMPPADQFWGDRYGGVRDPFGHRWWIA 120 (122)
T ss_pred ceEEEEEEeCCHHHHHHHHHH-CCCeEecCcccccccceEEEEECCCCCEEEEe
Confidence 456999999999998777765 68887654322223334455543 34555554
No 146
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=69.49 E-value=32 Score=23.52 Aligned_cols=53 Identities=6% Similarity=-0.137 Sum_probs=33.4
Q ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEe-CCeEEEEEe
Q 029285 74 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLME 128 (196)
Q Consensus 74 ~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~-g~~~l~l~~ 128 (196)
.++.|+++.|.|.++..+... .+|........ .......+|+.- +|..++|+.
T Consensus 56 ~~~~~~af~v~~~~~~~~~~~-~~g~~~~~~~~-~~~~~~~~~~~DPdG~~iEl~~ 109 (113)
T cd07267 56 ARFVGAAFEAASRADLEKAAA-LPGASVIDDLE-APGGGKRVTLTDPDGFPVELVY 109 (113)
T ss_pred CcccEEEEEECCHHHHHHHHH-cCCCeeecCCC-CCCCceEEEEECCCCCEEEEEe
Confidence 367899999999998888855 48887664221 111123344443 456777764
No 147
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=69.09 E-value=32 Score=23.62 Aligned_cols=26 Identities=4% Similarity=0.162 Sum_probs=22.4
Q ss_pred eEEEEEcCCHHHHHHHHHhccCCEEee
Q 029285 77 HHVGILCENLERSLEFYQNILGLEINE 103 (196)
Q Consensus 77 ~hv~l~v~Dl~~a~~FY~~vLG~~~~~ 103 (196)
.|+.+.|.|++++.+...+ .|.++..
T Consensus 73 ~~~~~~v~di~~~~~~l~~-~G~~~~~ 98 (125)
T cd07264 73 FEIAFVTDDVAAAFARAVE-AGAVLVS 98 (125)
T ss_pred EEEEEEcCCHHHHHHHHHH-cCCEecc
Confidence 4899999999999999887 7888764
No 148
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.29 E-value=48 Score=24.85 Aligned_cols=101 Identities=11% Similarity=0.027 Sum_probs=57.1
Q ss_pred EEcCCHHHHHHHHHhccCCEEee---ecCCCC-----CCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEE
Q 029285 81 ILCENLERSLEFYQNILGLEINE---ARPHDK-----LPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 152 (196)
Q Consensus 81 l~v~Dl~~a~~FY~~vLG~~~~~---~~~~~~-----~~~~~~~l~~g~~~l~l~~~~~~~~~~~~p~~~~~~~hi~f~v 152 (196)
.+-.+.++|..||.++|.=..+. +.+.+. .....+-+..+|..+..+...... .+....+ ..+.+.+
T Consensus 11 ~F~~~AeeA~~fY~s~FpdS~i~~i~r~p~~~~~g~~G~Vl~a~F~l~g~~f~~ld~g~~~----~f~fneA-~S~~v~~ 85 (151)
T COG3865 11 WFDGNAEEAMNFYLSTFPDSKIIGITRYPEGEPGGKEGKVLVAEFTLNGQSFMALDGGPNT----SFKFNEA-FSFQVAC 85 (151)
T ss_pred EECCcHHHHHHHHHHhCCcceeeeeeecCCCCCCCCCccEEEEEEEECCeEEEEEcCCCCc----CCCcCcc-EEEEEEc
Confidence 33489999999999988543322 222211 122334566677655444322211 0112222 2455556
Q ss_pred C---CHHHHHHHHHHCCCeEEeeCCCceEEEEEcCCCCeEEEE
Q 029285 153 R---DVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFT 192 (196)
Q Consensus 153 ~---dl~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~iEl~ 192 (196)
+ .+|.+...|.+.|.+. ..-.+++|-.|.-|.|.
T Consensus 86 ~~q~E~Drlwnal~~~g~e~------~~cgW~kDKfGVSWQi~ 122 (151)
T COG3865 86 DDQEEIDRLWNALSDNGGEA------EACGWLKDKFGVSWQIV 122 (151)
T ss_pred CCHHHHHHHHHHHhccCcch------hcceeEecccCcEEEEc
Confidence 6 4555677788877522 34468899999999875
No 149
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=67.42 E-value=35 Score=23.52 Aligned_cols=30 Identities=13% Similarity=0.152 Sum_probs=24.9
Q ss_pred CceEEEEEECCHHHHHHHHHH-CCCeEEeeC
Q 029285 144 RDRHTCIAIRDVSKLKMILDK-AGISYTLSK 173 (196)
Q Consensus 144 ~~~hi~f~v~dl~~~~~~l~~-~G~~~~~~~ 173 (196)
++.|+.+.|+|++++.+...+ .|.++....
T Consensus 4 ~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~ 34 (122)
T cd07265 4 RPGHVQLRVLDLEEAIKHYREVLGLDEVGRD 34 (122)
T ss_pred eEeEEEEEeCCHHHHHHHHHhccCCEeeeec
Confidence 568999999999999999875 898775543
No 150
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=66.96 E-value=31 Score=24.68 Aligned_cols=56 Identities=11% Similarity=0.128 Sum_probs=34.9
Q ss_pred ceeeEEEEEcC--CHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEe-CCeEEEEEecC
Q 029285 74 VSVHHVGILCE--NLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELP 130 (196)
Q Consensus 74 ~~l~hv~l~v~--Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~-g~~~l~l~~~~ 130 (196)
.+++|+++.+. |++++.+-..+ .|.++...........+..|+.. +|..+++....
T Consensus 62 ~~~~hiaf~v~~~dv~~~~~~l~~-~G~~i~~~~~~~~~~~~~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 62 QSYTHIAFSIEEEDFDHWYQRLKE-NDVNILPGRERDERDKKSIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred CCeeEEEEEecHHHHHHHHHHHHH-CCceEcCCccccCCCceEEEEECCCCCEEEEEeCC
Confidence 35789999987 89998888887 79887542211111223444443 35667766543
No 151
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=66.81 E-value=35 Score=23.47 Aligned_cols=53 Identities=11% Similarity=0.053 Sum_probs=33.4
Q ss_pred eeeEEEEEcCCHHHHHHHHHhccCC-EEeeecCCCCCCceeEEEEe-CCeEEEEEe
Q 029285 75 SVHHVGILCENLERSLEFYQNILGL-EINEARPHDKLPYRGAWLWV-GAEMIHLME 128 (196)
Q Consensus 75 ~l~hv~l~v~Dl~~a~~FY~~vLG~-~~~~~~~~~~~~~~~~~l~~-g~~~l~l~~ 128 (196)
...|+.+.|.|+++..+-.++ .|. ++.........+.+.+|+.. +|..+++.+
T Consensus 64 ~~~~l~~~v~dvd~~~~~l~~-~g~~~~~~~~~~~~~g~r~~~~~DPdGn~iei~~ 118 (120)
T cd09011 64 NNFELYFEEEDFDAFLDKLKR-YDNIEYVHPIKEHPWGQRVVRFYDPDKHIIEVGE 118 (120)
T ss_pred CceEEEEEehhhHHHHHHHHh-cCCcEEecCcccCCCccEEEEEECCCCCEEEEec
Confidence 346999999999999999988 654 45432222222334555554 355666654
No 152
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=66.75 E-value=37 Score=24.97 Aligned_cols=51 Identities=12% Similarity=0.150 Sum_probs=34.0
Q ss_pred CCceEEEEEECCHHHHHHHHHH-CCCeEEeeC--C-----CceEEEEE-cCCCCeEEEEe
Q 029285 143 GRDRHTCIAIRDVSKLKMILDK-AGISYTLSK--S-----GRPAIFTR-DPDANALEFTQ 193 (196)
Q Consensus 143 ~~~~hi~f~v~dl~~~~~~l~~-~G~~~~~~~--~-----g~~~~~~~-DPdG~~iEl~e 193 (196)
.++.|+++.|+|++++.+...+ .|.++.... . +....+++ +++++.+.+.+
T Consensus 8 ~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~ 67 (154)
T cd07237 8 QGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAE 67 (154)
T ss_pred CccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEc
Confidence 3678999999999999998876 888764321 1 22344443 44556666654
No 153
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=65.29 E-value=45 Score=24.45 Aligned_cols=56 Identities=9% Similarity=-0.079 Sum_probs=33.5
Q ss_pred ceeeEEEEEcCCHHHHHHHHHhc--cCCEEeeecCCCC-CCceeEEEEe-CCeEEEEEec
Q 029285 74 VSVHHVGILCENLERSLEFYQNI--LGLEINEARPHDK-LPYRGAWLWV-GAEMIHLMEL 129 (196)
Q Consensus 74 ~~l~hv~l~v~Dl~~a~~FY~~v--LG~~~~~~~~~~~-~~~~~~~l~~-g~~~l~l~~~ 129 (196)
.+++|+++.|.|+++....+..+ .|+++........ ......|+.. +|..++|..-
T Consensus 66 ~g~~Hiaf~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~ 125 (153)
T cd07257 66 SGVHHAAFEVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTD 125 (153)
T ss_pred CceeEEEEEcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcC
Confidence 57899999999999998554442 6787764211101 1111234433 4678888743
No 154
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=64.48 E-value=23 Score=23.87 Aligned_cols=53 Identities=17% Similarity=0.358 Sum_probs=32.0
Q ss_pred eeeEEEEEcC--CHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEe-CCeEEEEEe
Q 029285 75 SVHHVGILCE--NLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLME 128 (196)
Q Consensus 75 ~l~hv~l~v~--Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~-g~~~l~l~~ 128 (196)
++.|+++.|. |+++..+-..+ .|.++...........+..|+.. +|..++++.
T Consensus 55 ~~~hiaf~v~~~d~~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~~DPdG~~iEi~~ 110 (113)
T cd08345 55 TYTHIAFQIQSEEFDEYTERLKA-LGVEMKPERPRVQGEGRSIYFYDPDGHLLELHA 110 (113)
T ss_pred CccEEEEEcCHHHHHHHHHHHHH-cCCccCCCccccCCCceEEEEECCCCCEEEEEe
Confidence 5689999995 67777777776 78887643222111223445543 466777763
No 155
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=64.33 E-value=33 Score=23.75 Aligned_cols=26 Identities=12% Similarity=0.280 Sum_probs=21.8
Q ss_pred eEEEEEECCHHHHHHHHHHCCCeEEe
Q 029285 146 RHTCIAIRDVSKLKMILDKAGISYTL 171 (196)
Q Consensus 146 ~hi~f~v~dl~~~~~~l~~~G~~~~~ 171 (196)
..+.+.|+|+++..+..+..|.+...
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~lGf~~~~ 27 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTALGFEFNP 27 (124)
T ss_pred EEEEeecCCHHHHHHHHHHCCCEEcc
Confidence 46889999999999988888887653
No 156
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=64.20 E-value=39 Score=23.96 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=20.4
Q ss_pred eeeEEEEEcC--CHHHHHHHHHhccCCEEee
Q 029285 75 SVHHVGILCE--NLERSLEFYQNILGLEINE 103 (196)
Q Consensus 75 ~l~hv~l~v~--Dl~~a~~FY~~vLG~~~~~ 103 (196)
+++|+++.|. |+++..+--.+ .|+++..
T Consensus 66 ~~~Hiaf~v~~~~ld~~~~~l~~-~gv~~~~ 95 (131)
T cd08364 66 TYNHIAFKISDSDVDEYTERIKA-LGVEMKP 95 (131)
T ss_pred CceEEEEEcCHHHHHHHHHHHHH-CCCEEec
Confidence 5799999998 56666666655 7877653
No 157
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=63.28 E-value=38 Score=24.02 Aligned_cols=27 Identities=7% Similarity=0.036 Sum_probs=21.9
Q ss_pred ceEEEEEECCHHHHHHHHHH-CCCeEEe
Q 029285 145 DRHTCIAIRDVSKLKMILDK-AGISYTL 171 (196)
Q Consensus 145 ~~hi~f~v~dl~~~~~~l~~-~G~~~~~ 171 (196)
+.|+++.|+|++++.+...+ .|.++..
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~ 28 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLV 28 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEec
Confidence 36999999999999998876 5776643
No 158
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=62.30 E-value=39 Score=22.49 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=22.0
Q ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCE
Q 029285 74 VSVHHVGILCENLERSLEFYQNILGLE 100 (196)
Q Consensus 74 ~~l~hv~l~v~Dl~~a~~FY~~vLG~~ 100 (196)
.+-.|+.+.|.|++++.+-..+ .|.+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~l~~-~G~~ 82 (112)
T cd08349 57 GRGGSVYIEVEDVDALYAELKA-KGAD 82 (112)
T ss_pred CCcEEEEEEeCCHHHHHHHHHH-cCCc
Confidence 3455899999999999999987 8887
No 159
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=61.74 E-value=25 Score=21.32 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=22.3
Q ss_pred CceEEEEEECCHHHHHHHHHHCCCeE
Q 029285 144 RDRHTCIAIRDVSKLKMILDKAGISY 169 (196)
Q Consensus 144 ~~~hi~f~v~dl~~~~~~l~~~G~~~ 169 (196)
+...+.|.+++.+.+.+.|+++|+.+
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 34678999999999999999999865
No 160
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=61.16 E-value=44 Score=24.33 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=22.6
Q ss_pred CceEEEEEECCHHHHHHHHHH-CCCeEE
Q 029285 144 RDRHTCIAIRDVSKLKMILDK-AGISYT 170 (196)
Q Consensus 144 ~~~hi~f~v~dl~~~~~~l~~-~G~~~~ 170 (196)
.+.|+.+.|+|++++.+..++ .|.++.
T Consensus 4 ~l~Hv~i~V~Dle~s~~FY~~~LG~~~~ 31 (144)
T cd07239 4 KISHVVLNSPDVDKTVAFYEDVLGFRVS 31 (144)
T ss_pred eeeEEEEECCCHHHHHHHHHhcCCCEEE
Confidence 568999999999999998854 787764
No 161
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=60.33 E-value=36 Score=23.47 Aligned_cols=52 Identities=13% Similarity=0.101 Sum_probs=27.5
Q ss_pred eeeEEEEEcCCHH---HHHHHHHhccCCEEeeecCCCCCCceeEEEEe-CCeEEEEEe
Q 029285 75 SVHHVGILCENLE---RSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLME 128 (196)
Q Consensus 75 ~l~hv~l~v~Dl~---~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~-g~~~l~l~~ 128 (196)
+++|+++.|.+.+ +..+...+ .|.++.......... ...++.. +|..+++..
T Consensus 62 ~~~h~af~v~~~~~v~~~~~~l~~-~G~~~~~~~~~~~~~-~~~~~~DPdG~~iEl~~ 117 (121)
T cd09013 62 GLGHIAWRASSPEALERRVAALEA-SGLGIGWIEGDPGHG-KAYRFRSPDGHPMELYW 117 (121)
T ss_pred ceEEEEEEcCCHHHHHHHHHHHHH-cCCccccccCCCCCc-ceEEEECCCCCEEEEEE
Confidence 6889999998655 55555544 577653211111111 2233333 456666653
No 162
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=60.04 E-value=48 Score=22.65 Aligned_cols=29 Identities=21% Similarity=0.224 Sum_probs=24.2
Q ss_pred CceEEEEEECCHHHHHHHHHH-CCCeEEee
Q 029285 144 RDRHTCIAIRDVSKLKMILDK-AGISYTLS 172 (196)
Q Consensus 144 ~~~hi~f~v~dl~~~~~~l~~-~G~~~~~~ 172 (196)
++.|+.+.|+|++++.+.+.+ .|.++...
T Consensus 4 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~ 33 (121)
T cd07266 4 RLGHVELRVTDLEKSREFYVDVLGLVETEE 33 (121)
T ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEecc
Confidence 567999999999999999876 78877544
No 163
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=59.82 E-value=53 Score=22.70 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=30.8
Q ss_pred CceEEEEEECCHHHHHHHHHH-CCCeEEeeCCCceEEEEEcCCCCeEEEEe
Q 029285 144 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDPDANALEFTQ 193 (196)
Q Consensus 144 ~~~hi~f~v~dl~~~~~~l~~-~G~~~~~~~~g~~~~~~~DPdG~~iEl~e 193 (196)
.+.|+++.|+|+++..+...+ .|.+..... + ...++...+|..+++.+
T Consensus 4 ~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~-~-~~~~~~~~~~~~l~~~~ 52 (123)
T cd08351 4 TLNHTIVPARDREASAEFYAEILGLPWAKPF-G-PFAVVKLDNGVSLDFAQ 52 (123)
T ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEeeecc-C-CEEEEEcCCCcEEEEec
Confidence 457999999999999988865 587765432 1 22333333455555544
No 164
>PRK06724 hypothetical protein; Provisional
Probab=59.71 E-value=57 Score=23.28 Aligned_cols=54 Identities=11% Similarity=0.130 Sum_probs=31.3
Q ss_pred eeeEEEEEc---CCHHHHHHHHHhccCCEEeeecCC-C--CCCceeEEEE-eCCeEEEEEec
Q 029285 75 SVHHVGILC---ENLERSLEFYQNILGLEINEARPH-D--KLPYRGAWLW-VGAEMIHLMEL 129 (196)
Q Consensus 75 ~l~hv~l~v---~Dl~~a~~FY~~vLG~~~~~~~~~-~--~~~~~~~~l~-~g~~~l~l~~~ 129 (196)
+..|+++.| .|+++..+...+ .|.++...... . ..++..+++. .+|..++|...
T Consensus 63 g~~h~af~v~~~~dvd~~~~~l~~-~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 123 (128)
T PRK06724 63 GPRHICYQAINRKVVDEVAEFLSS-TKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYT 123 (128)
T ss_pred CceeEEEecCChHHHHHHHHHHHH-CCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeC
Confidence 578999998 455555555555 78887532111 1 1223344443 35678888655
No 165
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.24 E-value=28 Score=21.72 Aligned_cols=28 Identities=11% Similarity=0.158 Sum_probs=21.6
Q ss_pred ceEEEEEEC--CHHHHHHHHHHCCCeEEee
Q 029285 145 DRHTCIAIR--DVSKLKMILDKAGISYTLS 172 (196)
Q Consensus 145 ~~hi~f~v~--dl~~~~~~l~~~G~~~~~~ 172 (196)
...+.|.++ +.+++.+.|+++|+++.++
T Consensus 42 ~~~v~i~v~~~~~~~~~~~L~~~G~~v~~~ 71 (72)
T cd04883 42 NKILVFRVQTMNPRPIIEDLRRAGYEVLWP 71 (72)
T ss_pred eEEEEEEEecCCHHHHHHHHHHCCCeeeCC
Confidence 344566654 8889999999999988765
No 166
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=58.47 E-value=31 Score=23.47 Aligned_cols=54 Identities=11% Similarity=0.064 Sum_probs=29.5
Q ss_pred eceeeEEEEEcC--CHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEe-CCeEEEEEe
Q 029285 73 VVSVHHVGILCE--NLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLME 128 (196)
Q Consensus 73 i~~l~hv~l~v~--Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~-g~~~l~l~~ 128 (196)
..++.|+++.+. |++++.+-..+ .|.++..... .......+++.. +|..++++.
T Consensus 65 ~~~~~~~~~~v~~~dl~~~~~~l~~-~g~~~~~~~~-~~~~~~~~~~~DP~G~~ie~~~ 121 (122)
T cd08354 65 GSGPGHFAFAIPAEELAEWEAHLEA-KGVAIESEVQ-WPRGGRSLYFRDPDGNLLELAT 121 (122)
T ss_pred CCCccEEEEEcCHHHHHHHHHHHHh-cCCceecccc-CCCCeeEEEEECCCCCEEEEec
Confidence 346889999985 66666666655 5776554221 111223333332 355666553
No 167
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=57.37 E-value=57 Score=22.74 Aligned_cols=47 Identities=15% Similarity=0.211 Sum_probs=30.8
Q ss_pred CceEEEEEECCHHHHHHHHHH-CCCeEEeeCCCceEEEEE-cCCCCeEEEE
Q 029285 144 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTR-DPDANALEFT 192 (196)
Q Consensus 144 ~~~hi~f~v~dl~~~~~~l~~-~G~~~~~~~~g~~~~~~~-DPdG~~iEl~ 192 (196)
.+.|+++.|+|+++..+...+ .|.+......+ .+|++ +.+++.+.+.
T Consensus 6 ~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~~--~~~l~~~~~~~~i~l~ 54 (124)
T cd08361 6 DIAYVRLGTRDLAGATRFATDILGLQVAERTAK--ATYFRSDARDHTLVYI 54 (124)
T ss_pred EeeEEEEeeCCHHHHHHHHHhccCceeccCCCC--eEEEEcCCccEEEEEE
Confidence 457999999999999988876 58876543222 33443 3345555543
No 168
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=56.95 E-value=50 Score=22.40 Aligned_cols=29 Identities=14% Similarity=0.173 Sum_probs=23.5
Q ss_pred CceEEEEEECCHHHHHHHHHH-CCCeEEee
Q 029285 144 RDRHTCIAIRDVSKLKMILDK-AGISYTLS 172 (196)
Q Consensus 144 ~~~hi~f~v~dl~~~~~~l~~-~G~~~~~~ 172 (196)
++.|+.|.|+|+++..+...+ .|.+....
T Consensus 3 ~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~ 32 (120)
T cd08362 3 ALRGVGLGVPDLAAAAAFYREVWGLSVVAE 32 (120)
T ss_pred eeeEEEEecCCHHHHHHHHHhCcCcEEEEe
Confidence 678999999999999888876 77766433
No 169
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=56.40 E-value=18 Score=28.05 Aligned_cols=29 Identities=14% Similarity=0.329 Sum_probs=25.5
Q ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEee
Q 029285 74 VSVHHVGILCENLERSLEFYQNILGLEINE 103 (196)
Q Consensus 74 ~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~ 103 (196)
.+++||++.|.|++++.+-.++ -|.++..
T Consensus 82 ~Gv~HIAf~vdDI~~~~~~L~~-~Gv~~l~ 110 (191)
T cd07250 82 AGVQHIALATDDIFATVAALRA-RGVEFLP 110 (191)
T ss_pred CceeEEEEECCCHHHHHHHHHH-cCCeecc
Confidence 4889999999999999999988 7877664
No 170
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=55.90 E-value=57 Score=22.90 Aligned_cols=48 Identities=19% Similarity=0.260 Sum_probs=30.8
Q ss_pred eEEEEEECCHHHHHHHHHH-CCCeEEeeCC--C-ceEEEEEcCC-CCeEEEEe
Q 029285 146 RHTCIAIRDVSKLKMILDK-AGISYTLSKS--G-RPAIFTRDPD-ANALEFTQ 193 (196)
Q Consensus 146 ~hi~f~v~dl~~~~~~l~~-~G~~~~~~~~--g-~~~~~~~DPd-G~~iEl~e 193 (196)
.|+++.|+|++++.+.+.+ .|.++..... + ....+++..+ +..+++..
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 53 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDPGVDAAAFLRCDEDHHDLALFP 53 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccCCceeEEEEEcCCCcceEEEEc
Confidence 4899999999999998876 7887643321 2 2334555433 34555544
No 171
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=55.63 E-value=86 Score=23.52 Aligned_cols=91 Identities=14% Similarity=0.153 Sum_probs=48.9
Q ss_pred eceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCC--CCCCceeEEEEeC-----CeEEEEEecCCCCCC-CCCCCCCCC
Q 029285 73 VVSVHHVGILCENLERSLEFYQNILGLEINEARPH--DKLPYRGAWLWVG-----AEMIHLMELPNPDPL-SGRPEHGGR 144 (196)
Q Consensus 73 i~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~--~~~~~~~~~l~~g-----~~~l~l~~~~~~~~~-~~~p~~~~~ 144 (196)
-.++..+++.+.|+++..+=... .|+....+... .......+++..+ +....++++..+.+. ...|....+
T Consensus 75 ~~g~~~~~l~t~d~~~~~~~l~~-~G~~~~~r~~~dG~~~~w~~~~~~~~~~p~~~~~Pf~i~~~~~~~~~~~h~ng~~~ 153 (175)
T PF13468_consen 75 GEGLYGWALRTDDIEAVAARLRA-AGLDAGSRVRPDGGDLRWRLAFPEDGALPFGGLLPFFIQWETPHPEWARHPNGALG 153 (175)
T ss_dssp --EEEEEEEE-S-HHHHHHHHHT-TT-EEEEEEEEEE-EEEEEEEEEE-SS---SS---EEEEESS-CCHHTTT--TTEE
T ss_pred CCCeEEEEEecCCHHHHHHHHHh-cCCCCCCcCcCCCCcceEEEEEeCCcccccCCCCcEEEEeCCCCcccccCCCccce
Confidence 36889999999999999999997 88763222111 1111122233322 234445555544221 223444457
Q ss_pred ceEEEEEECCHHHHHHHHHH
Q 029285 145 DRHTCIAIRDVSKLKMILDK 164 (196)
Q Consensus 145 ~~hi~f~v~dl~~~~~~l~~ 164 (196)
+.++.+.++|.+++.+.+.+
T Consensus 154 i~~v~i~~~d~~~~~~~~~~ 173 (175)
T PF13468_consen 154 ITRVVIAVPDPDAAAARYAR 173 (175)
T ss_dssp EEEEEEEETTHHHHHHHHHH
T ss_pred EEEEEEEeCCHHHHHHHHHh
Confidence 88999999999988777654
No 172
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=54.57 E-value=54 Score=22.15 Aligned_cols=44 Identities=9% Similarity=0.166 Sum_probs=28.4
Q ss_pred EEEEECCHHHHHHHHHHC-CCeEEeeCCCceEEEEEcCCCCeEEEEe
Q 029285 148 TCIAIRDVSKLKMILDKA-GISYTLSKSGRPAIFTRDPDANALEFTQ 193 (196)
Q Consensus 148 i~f~v~dl~~~~~~l~~~-G~~~~~~~~g~~~~~~~DPdG~~iEl~e 193 (196)
|.+.|+|++++.+...+. |.++..... ....++.. +|..+++.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~~-~~~~~~~~-~~~~~~l~~ 46 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADSN-DGVAFFQL-GGLVLALFP 46 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccCC-CceEEEEc-CCeEEEEec
Confidence 678999999999988765 887654422 22233333 555666654
No 173
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=54.42 E-value=66 Score=23.27 Aligned_cols=55 Identities=13% Similarity=0.131 Sum_probs=32.6
Q ss_pred ceeeEEEEEcCCHHHHHHHHHhc--cCCEEeeecCCCC-CCceeEEEE-eCCeEEEEEe
Q 029285 74 VSVHHVGILCENLERSLEFYQNI--LGLEINEARPHDK-LPYRGAWLW-VGAEMIHLME 128 (196)
Q Consensus 74 ~~l~hv~l~v~Dl~~a~~FY~~v--LG~~~~~~~~~~~-~~~~~~~l~-~g~~~l~l~~ 128 (196)
.+++|+++.|.|+++..+.+..+ .|.++........ ......|+. .+|..++|..
T Consensus 66 ~~~~Hiaf~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~ 124 (143)
T cd07243 66 GKLHHFSFFLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFA 124 (143)
T ss_pred CCceEEEEEcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEec
Confidence 36899999999999865544442 6887653211111 112234444 3467888865
No 174
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=53.32 E-value=81 Score=22.88 Aligned_cols=56 Identities=7% Similarity=-0.024 Sum_probs=32.2
Q ss_pred ceeeEEEEEcCCHHHHHHHHHhc--cCCEEeeecCC-CCCCceeEEEEe-CCeEEEEEec
Q 029285 74 VSVHHVGILCENLERSLEFYQNI--LGLEINEARPH-DKLPYRGAWLWV-GAEMIHLMEL 129 (196)
Q Consensus 74 ~~l~hv~l~v~Dl~~a~~FY~~v--LG~~~~~~~~~-~~~~~~~~~l~~-g~~~l~l~~~ 129 (196)
.+++|+++.|.|.+.-.+++..+ .|.++...... ........|+.. +|..+++...
T Consensus 55 ~gl~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~ 114 (141)
T cd07258 55 SHFHHVNFMVTDIDDIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFG 114 (141)
T ss_pred CceEEEEEECCCHHHHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeC
Confidence 58999999999877555555443 68776532111 111122334544 4667887643
No 175
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.65 E-value=37 Score=22.13 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=25.6
Q ss_pred HHHHHHHHHHCCCeEEeeC---CC---ceEEEEEcCCCCeE
Q 029285 155 VSKLKMILDKAGISYTLSK---SG---RPAIFTRDPDANAL 189 (196)
Q Consensus 155 l~~~~~~l~~~G~~~~~~~---~g---~~~~~~~DPdG~~i 189 (196)
+.++..-|.+.|+.+.... .| .-.||+.|++|+.+
T Consensus 15 L~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl 55 (72)
T cd04895 15 LLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKL 55 (72)
T ss_pred HHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCC
Confidence 4456677889999886532 33 35699999999876
No 176
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=51.82 E-value=32 Score=21.19 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHCCCeEEeeCCCceEEEEEcCCCCeEEEEeec
Q 029285 153 RDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQVD 195 (196)
Q Consensus 153 ~dl~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~iEl~e~~ 195 (196)
-++++.-++-...|-.+.....++ .+-..+|||..+.|.+..
T Consensus 4 ~~ls~~ea~~l~~Gr~l~~~~~~g-~~aa~~pdG~lvAL~~~~ 45 (56)
T PF09142_consen 4 RELSAEEARDLRHGRRLPAAGPPG-PVAAFAPDGRLVALLEER 45 (56)
T ss_dssp EE--HHHHHHHHTT---B-----S--EEEE-TTS-EEEEEEEE
T ss_pred eECCHHHHHHHhCCCccCCCCCCc-eEEEECCCCcEEEEEEcc
Confidence 355566666667776665443222 355789999999998754
No 177
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=50.17 E-value=79 Score=21.66 Aligned_cols=24 Identities=8% Similarity=0.045 Sum_probs=20.4
Q ss_pred eEEEEEcCCHHHHHHHHHhccCCEE
Q 029285 77 HHVGILCENLERSLEFYQNILGLEI 101 (196)
Q Consensus 77 ~hv~l~v~Dl~~a~~FY~~vLG~~~ 101 (196)
.|+.+.|.|+++..+-..+ .|.+.
T Consensus 60 ~~~~~~v~dvd~~~~~l~~-~G~~~ 83 (120)
T cd08350 60 FGCCLRLPDVAALHAEFRA-AGLPE 83 (120)
T ss_pred ceEEEEeCCHHHHHHHHHH-hCccc
Confidence 4788999999999999987 78763
No 178
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=49.33 E-value=4 Score=24.12 Aligned_cols=25 Identities=24% Similarity=0.565 Sum_probs=19.8
Q ss_pred eceeeEEEEEcCCHHHHHHHHHhcc
Q 029285 73 VVSVHHVGILCENLERSLEFYQNIL 97 (196)
Q Consensus 73 i~~l~hv~l~v~Dl~~a~~FY~~vL 97 (196)
+..++-.++.+.+.++..+||..+|
T Consensus 9 igp~De~giP~~~vd~~kDWYktMF 33 (47)
T PF02208_consen 9 IGPVDESGIPLSNVDRPKDWYKTMF 33 (47)
T ss_pred cCccccCCCccccccchhHHHHHHH
Confidence 3445667778899999999999866
No 179
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=48.26 E-value=88 Score=21.48 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=23.4
Q ss_pred CceEEEEEECCHHHHHHHHHH-CCCeEEee
Q 029285 144 RDRHTCIAIRDVSKLKMILDK-AGISYTLS 172 (196)
Q Consensus 144 ~~~hi~f~v~dl~~~~~~l~~-~G~~~~~~ 172 (196)
++.|+++.|+|++++.+...+ .|.+....
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~ 30 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVR 30 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEe
Confidence 357999999999999998875 78776543
No 180
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=48.02 E-value=83 Score=21.12 Aligned_cols=29 Identities=10% Similarity=0.229 Sum_probs=19.8
Q ss_pred ceeeEEEEEcCC---HHHHHHHHHhccCCEEee
Q 029285 74 VSVHHVGILCEN---LERSLEFYQNILGLEINE 103 (196)
Q Consensus 74 ~~l~hv~l~v~D---l~~a~~FY~~vLG~~~~~ 103 (196)
.+..|+.+.|.| +++..+...+ .|.++..
T Consensus 58 ~~~~~~~~~v~~~~~~~~~~~~~~~-~g~~v~~ 89 (114)
T cd07261 58 GGGSELAFMVDDGAAVDALYAEWQA-KGVKIIQ 89 (114)
T ss_pred CCceEEEEEcCCHHHHHHHHHHHHH-CCCeEec
Confidence 356899999987 4445554555 7777765
No 181
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=47.87 E-value=88 Score=21.35 Aligned_cols=52 Identities=12% Similarity=0.063 Sum_probs=31.6
Q ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEEEEe-CCeEEEEE
Q 029285 75 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLM 127 (196)
Q Consensus 75 ~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~-g~~~l~l~ 127 (196)
.-.|+.+.|.|++++.+=..+ .|.++.........+.+.+++.- +|..+.|.
T Consensus 68 ~~~~~~~~v~d~d~~~~~l~~-~G~~v~~~~~~~~~g~~~~~~~DPdG~~~~l~ 120 (122)
T cd08355 68 GTQGVYVVVDDVDAHYERARA-AGAEILREPTDTPYGSREFTARDPEGNLWTFG 120 (122)
T ss_pred ceEEEEEEECCHHHHHHHHHH-CCCEEeeCccccCCCcEEEEEECCCCCEEEEe
Confidence 456899999999888777666 68887753222222334444443 34455543
No 182
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=46.86 E-value=1.1e+02 Score=22.11 Aligned_cols=28 Identities=14% Similarity=0.128 Sum_probs=23.2
Q ss_pred CceEEEEEECCHHHHHHHHH-HCCCeEEe
Q 029285 144 RDRHTCIAIRDVSKLKMILD-KAGISYTL 171 (196)
Q Consensus 144 ~~~hi~f~v~dl~~~~~~l~-~~G~~~~~ 171 (196)
.+.|+++.|.|+++..+-.. ..|.+...
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~ 30 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLR 30 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEe
Confidence 35799999999999999885 57987643
No 183
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=43.76 E-value=24 Score=29.72 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=22.7
Q ss_pred CCCCceEEEEEE------CCHHHHHHHHHHCCCeEE
Q 029285 141 HGGRDRHTCIAI------RDVSKLKMILDKAGISYT 170 (196)
Q Consensus 141 ~~~~~~hi~f~v------~dl~~~~~~l~~~G~~~~ 170 (196)
+|..++|+++.| .||+++.+.|+++|+++.
T Consensus 181 ~G~~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 181 HGYHINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp HTCS-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred cccccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 456788999999 999999999999998875
No 184
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.50 E-value=82 Score=20.75 Aligned_cols=29 Identities=14% Similarity=0.121 Sum_probs=23.3
Q ss_pred CceEEEEEECC----HHHHHHHHHHCCCeEEee
Q 029285 144 RDRHTCIAIRD----VSKLKMILDKAGISYTLS 172 (196)
Q Consensus 144 ~~~hi~f~v~d----l~~~~~~l~~~G~~~~~~ 172 (196)
+...+.+++++ ++++.+.|++.|+.+...
T Consensus 40 ~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~~ 72 (85)
T cd04906 40 AHIFVGVSVANGAEELAELLEDLKSAGYEVVDL 72 (85)
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHHHCCCCeEEC
Confidence 33467788888 889999999999988653
No 185
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.93 E-value=27 Score=28.11 Aligned_cols=21 Identities=29% Similarity=0.684 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHhccCCEEeee
Q 029285 84 ENLERSLEFYQNILGLEINEA 104 (196)
Q Consensus 84 ~Dl~~a~~FY~~vLG~~~~~~ 104 (196)
.|+.+++.||.+.||+++..-
T Consensus 145 a~~~e~a~wy~dyLGleie~~ 165 (246)
T KOG4657|consen 145 ADIHEAASWYNDYLGLEIEAG 165 (246)
T ss_pred hccHHHHHHHHHhcCceeeec
Confidence 477889999999999998763
No 186
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=34.21 E-value=1.5e+02 Score=20.06 Aligned_cols=55 Identities=13% Similarity=0.161 Sum_probs=31.3
Q ss_pred ceeeEEEEEcCCHHHHHHHHHhc--cCCEEeeecCCCC--CCceeEEEEe-CCeEEEEEe
Q 029285 74 VSVHHVGILCENLERSLEFYQNI--LGLEINEARPHDK--LPYRGAWLWV-GAEMIHLME 128 (196)
Q Consensus 74 ~~l~hv~l~v~Dl~~a~~FY~~v--LG~~~~~~~~~~~--~~~~~~~l~~-g~~~l~l~~ 128 (196)
.++.|+++.|.|.+.-.++|..+ .|.++....+... ...+..|+.. +|..++|+.
T Consensus 57 ~~~~h~~f~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 116 (120)
T cd07254 57 GGLNHLGVQVDSAEEVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFV 116 (120)
T ss_pred CCeeEEEEEeCCHHHHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEE
Confidence 47889999999966655555554 4877664321110 0112344443 456777764
No 187
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=33.21 E-value=52 Score=16.26 Aligned_cols=14 Identities=21% Similarity=0.060 Sum_probs=9.6
Q ss_pred eEEEEEcCCCCeEE
Q 029285 177 PAIFTRDPDANALE 190 (196)
Q Consensus 177 ~~~~~~DPdG~~iE 190 (196)
-...+.|++|++|-
T Consensus 7 I~~i~~D~~G~lWi 20 (24)
T PF07494_consen 7 IYSIYEDSDGNLWI 20 (24)
T ss_dssp EEEEEE-TTSCEEE
T ss_pred EEEEEEcCCcCEEE
Confidence 34668899999873
No 188
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=33.12 E-value=1.6e+02 Score=21.81 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=31.5
Q ss_pred ceeeEEEEEcCCHHHHHHHHHhc--cCCEEeeecCCCCC-CceeEEEE-eCCeEEEEEec
Q 029285 74 VSVHHVGILCENLERSLEFYQNI--LGLEINEARPHDKL-PYRGAWLW-VGAEMIHLMEL 129 (196)
Q Consensus 74 ~~l~hv~l~v~Dl~~a~~FY~~v--LG~~~~~~~~~~~~-~~~~~~l~-~g~~~l~l~~~ 129 (196)
.+++|+++.|.|.+...++|..+ .|.++......... .....|+. .+|..+++...
T Consensus 68 ~~~~hiaf~v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 68 GRLHHLAYALDTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred CCceEEEEECCCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 35799999999877655554443 56665422111111 11123333 35778888775
No 189
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=30.97 E-value=2.2e+02 Score=20.94 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=23.2
Q ss_pred CceEEEEEECCHHHHHHHHHH-CCCeEE
Q 029285 144 RDRHTCIAIRDVSKLKMILDK-AGISYT 170 (196)
Q Consensus 144 ~~~hi~f~v~dl~~~~~~l~~-~G~~~~ 170 (196)
.+.|+++.|+|+++..+...+ .|.++.
T Consensus 3 ~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~ 30 (161)
T cd07256 3 RLDHFNLRVPDVDAGLAYYRDELGFRVS 30 (161)
T ss_pred eEEEEEEecCCHHHHHHHHHhccCCEEE
Confidence 578999999999999998876 788764
No 190
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=29.46 E-value=2.2e+02 Score=20.54 Aligned_cols=17 Identities=18% Similarity=0.128 Sum_probs=13.8
Q ss_pred eEEEEEcCCCCeEEEEe
Q 029285 177 PAIFTRDPDANALEFTQ 193 (196)
Q Consensus 177 ~~~~~~DPdG~~iEl~e 193 (196)
+..|+.||+|.++..+.
T Consensus 121 ~~~~lid~~G~i~~~~~ 137 (154)
T PRK09437 121 RISFLIDADGKIEHVFD 137 (154)
T ss_pred eEEEEECCCCEEEEEEc
Confidence 45789999999888764
No 191
>PF14133 DUF4300: Domain of unknown function (DUF4300)
Probab=27.88 E-value=1.2e+02 Score=24.87 Aligned_cols=37 Identities=27% Similarity=0.470 Sum_probs=25.4
Q ss_pred HHHHHHHHHHCCCeEEeeCCCceEEEEEcCCCCeEEE
Q 029285 155 VSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEF 191 (196)
Q Consensus 155 l~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~iEl 191 (196)
.+++.+.++++|+.+....-.--.++++|||++.+=+
T Consensus 150 ~~~i~k~wk~rgi~F~~~k~slISV~~h~~d~~~lFv 186 (250)
T PF14133_consen 150 AEKIQKYWKERGIKFNNDKASLISVFLHDPDDNSLFV 186 (250)
T ss_pred HHHHHHHHHHcCceeCCCceEEEEEEEEcCCCCeEEe
Confidence 3456778899999993333334568888888877654
No 192
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=27.87 E-value=2.7e+02 Score=21.09 Aligned_cols=49 Identities=20% Similarity=0.222 Sum_probs=37.8
Q ss_pred CceEEEEEECCHHHHHHHHHHCCCeEEee------------------CC-----C-ceEEEEEcCCCCeEEEE
Q 029285 144 RDRHTCIAIRDVSKLKMILDKAGISYTLS------------------KS-----G-RPAIFTRDPDANALEFT 192 (196)
Q Consensus 144 ~~~hi~f~v~dl~~~~~~l~~~G~~~~~~------------------~~-----g-~~~~~~~DPdG~~iEl~ 192 (196)
+...+++.+++.....+..++.|..+..- .. + .+.-|+.|+||.+..++
T Consensus 64 ~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~ 136 (157)
T COG1225 64 GAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW 136 (157)
T ss_pred CCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe
Confidence 55689999999999888888888876310 00 1 47789999999998877
No 193
>PF14907 NTP_transf_5: Uncharacterised nucleotidyltransferase
Probab=27.26 E-value=2.3e+02 Score=22.22 Aligned_cols=45 Identities=11% Similarity=0.299 Sum_probs=33.0
Q ss_pred EEEEE--CCHHHHHHHHHHCCCeEEeeCCCceEEEEEcCCCCeEEEEe
Q 029285 148 TCIAI--RDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQ 193 (196)
Q Consensus 148 i~f~v--~dl~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~iEl~e 193 (196)
|-+.| +|++++.+.|.+.|+..... .+....|...+.|..||+..
T Consensus 97 iDlLV~~~d~~~a~~~L~~~Gy~~~~~-~~~~~~~~~~~~~~~idlH~ 143 (249)
T PF14907_consen 97 IDLLVPPEDLERAVELLEELGYRIESP-SEHHWVYSHEPKGISIDLHW 143 (249)
T ss_pred eEEEEeCCcHHHHHHHHHHcCCEeccC-CCcceEEEecCCCEEEEEEe
Confidence 55555 59999999999999977654 33444555557888888865
No 194
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=26.87 E-value=43 Score=18.06 Aligned_cols=18 Identities=28% Similarity=0.634 Sum_probs=13.8
Q ss_pred EcCCHHHHHHHHHhccCC
Q 029285 82 LCENLERSLEFYQNILGL 99 (196)
Q Consensus 82 ~v~Dl~~a~~FY~~vLG~ 99 (196)
...|.++|+.+|++.|.+
T Consensus 11 ~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 11 QQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HCT-HHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 357899999999997744
No 195
>PF10706 Aminoglyc_resit: Aminoglycoside-2''-adenylyltransferase; InterPro: IPR019646 Aminoglycoside-2''-adenylyltransferase is conserved in Bacteria. It confers resistance to kanamycin, gentamicin, and tobramycin []. The protein is also produced by plasmids in various bacterial species and confers resistance to essentially all clinically available aminoglycosides except streptomycin, and it eliminates the synergism between aminoglycosides and cell-wall active agents []. ; PDB: 4E8I_A 4E8J_B.
Probab=26.46 E-value=2.3e+02 Score=21.82 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=20.8
Q ss_pred EEEEEECCHHHHHHHHHHCCCeEEee
Q 029285 147 HTCIAIRDVSKLKMILDKAGISYTLS 172 (196)
Q Consensus 147 hi~f~v~dl~~~~~~l~~~G~~~~~~ 172 (196)
-+.+..++.+++.+.|++.|+.++..
T Consensus 46 Di~~~~~~~~~l~~~L~~~G~~ite~ 71 (174)
T PF10706_consen 46 DIFVPREDQAELRALLKELGYRITET 71 (174)
T ss_dssp EEEEEGGGHHHHHHHHHHTT-EEEEE
T ss_pred EEEEEcchhHHHHHHHHHCCCEEEEe
Confidence 46677779999999999999988654
No 196
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=25.73 E-value=2.4e+02 Score=19.82 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=30.7
Q ss_pred ECCHHHHHHHHHHCCCeEEee-C-----CCceEEEEEcCCCCeEEEEeec
Q 029285 152 IRDVSKLKMILDKAGISYTLS-K-----SGRPAIFTRDPDANALEFTQVD 195 (196)
Q Consensus 152 v~dl~~~~~~l~~~G~~~~~~-~-----~g~~~~~~~DPdG~~iEl~e~~ 195 (196)
+.++.+.+.+|.+.| .+... . .|.-.+...|++|...+-....
T Consensus 23 ik~f~~~~~~l~~~G-~V~iG~~~g~f~~g~Ivlla~D~~~~I~~~~~M~ 71 (109)
T PF06923_consen 23 IKNFNKAYKELRKKG-RVGIGRSKGRFRPGVIVLLAVDEDGRIVDAEIMK 71 (109)
T ss_pred HHHHHHHHHHHHhCC-cEEEeeecCcccCCeEEEEEECCCCcEEEEEEEe
Confidence 446778889999999 44322 1 3456678889999999877654
No 197
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.18 E-value=1.8e+02 Score=19.01 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=24.3
Q ss_pred HHHHHHHHHCCCeEEeeC---CC---ceEEEEEcCCCCeE
Q 029285 156 SKLKMILDKAGISYTLSK---SG---RPAIFTRDPDANAL 189 (196)
Q Consensus 156 ~~~~~~l~~~G~~~~~~~---~g---~~~~~~~DPdG~~i 189 (196)
..+...|.+.|+.+.... .| .-.||++|.+|..+
T Consensus 16 ~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl 55 (75)
T cd04897 16 FDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTL 55 (75)
T ss_pred HHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCcc
Confidence 345567888998875432 33 46699999999876
No 198
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.16 E-value=1.1e+02 Score=19.09 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=19.8
Q ss_pred CceEEEEEEC---CHHHHHHHHHHCCCeE
Q 029285 144 RDRHTCIAIR---DVSKLKMILDKAGISY 169 (196)
Q Consensus 144 ~~~hi~f~v~---dl~~~~~~l~~~G~~~ 169 (196)
...++.++++ +++++.+.|++.|+.+
T Consensus 38 ~~v~v~ie~~~~~~~~~i~~~L~~~G~~~ 66 (68)
T cd04885 38 ARVLVGIQVPDREDLAELKERLEALGYPY 66 (68)
T ss_pred eEEEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 3456778876 5678889999999865
No 199
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=24.44 E-value=1.5e+02 Score=18.12 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=19.4
Q ss_pred EEEEEECCHHHHHHHHHHCCCeEE
Q 029285 147 HTCIAIRDVSKLKMILDKAGISYT 170 (196)
Q Consensus 147 hi~f~v~dl~~~~~~l~~~G~~~~ 170 (196)
.+-+.++|.+++.+.|+++|+++.
T Consensus 42 ~~rl~~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 42 ILRLIVSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred EEEEEECCHHHHHHHHHHCCCEEE
Confidence 456667888899999999998763
No 200
>COG3102 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.29 E-value=3.4e+02 Score=21.00 Aligned_cols=87 Identities=17% Similarity=0.127 Sum_probs=48.1
Q ss_pred ceeceeeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceeEE------EEeCCeEEEEEecCCCCCCCCCCCCCCC
Q 029285 71 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAW------LWVGAEMIHLMELPNPDPLSGRPEHGGR 144 (196)
Q Consensus 71 ~~i~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~------l~~g~~~l~l~~~~~~~~~~~~p~~~~~ 144 (196)
++-.-++|++|+|.+.+-+..|-...+..-.... +.--.+-..+. +.+.+..+.+++.+-+... .+.+ .|
T Consensus 35 lt~~~~DHIaLRvh~~qtAk~wr~~~lqcG~~lS-~n~iNGRpI~li~l~~Pl~v~~w~id~iELP~P~~K--~YP~-eg 110 (185)
T COG3102 35 LTQYTADHIALRVHQEQTAKRWRRGLLQCGELLS-ENLINGRPICLIKLHQPLQVAHWQIDIIELPYPKNK--RYPH-EG 110 (185)
T ss_pred ccccccceeEEEeCcHHHHHHHHHHHHHHHHHhh-hhhcCCceEEEEEcCCcceecceEEEEEEccCCcCC--CCCC-cC
Confidence 3345689999999999988877554332211110 00000001122 3345667888887765431 1222 35
Q ss_pred ceEEEEEEC-CHHHHHHH
Q 029285 145 DRHTCIAIR-DVSKLKMI 161 (196)
Q Consensus 145 ~~hi~f~v~-dl~~~~~~ 161 (196)
.-||-|..+ +-+++.++
T Consensus 111 WEHIEiVlP~~peel~~~ 128 (185)
T COG3102 111 WEHIEIVLPGDPEELNAR 128 (185)
T ss_pred ceeEEEEcCCChHHHHHH
Confidence 579999998 54555443
No 201
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=23.95 E-value=2.4e+02 Score=24.46 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=27.4
Q ss_pred cCCCCCCceeceeeEEEEEcCCHHHHHHHHHhcc
Q 029285 64 RDSDKIDYGVVSVHHVGILCENLERSLEFYQNIL 97 (196)
Q Consensus 64 ~~~~~~~~~i~~l~hv~l~v~Dl~~a~~FY~~vL 97 (196)
+...+-|+.+.++..|.+++.|.++.+..=+..|
T Consensus 53 ~tsegvP~~vtgVaqvki~~~~~~elL~~A~e~f 86 (428)
T KOG2668|consen 53 MTSEGVPFVVTGVAQVKIRVDDADELLLYACEQF 86 (428)
T ss_pred hcccCCceEeeeeEEEeeccCCHHHHHHHHHHHh
Confidence 4556678889999999999999999888766543
No 202
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=23.89 E-value=86 Score=22.74 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=21.0
Q ss_pred eEEEEEECCHHHHHHHHHHCCCeEE
Q 029285 146 RHTCIAIRDVSKLKMILDKAGISYT 170 (196)
Q Consensus 146 ~hi~f~v~dl~~~~~~l~~~G~~~~ 170 (196)
.|+-++-.|++++++.|+++|.++.
T Consensus 103 DhiLVr~~dLekAv~~L~eaGhev~ 127 (128)
T COG3603 103 DHILVREEDLEKAVKALEEAGHEVL 127 (128)
T ss_pred ceEEEehhhHHHHHHHHHHcCCccc
Confidence 3777777799999999999998763
No 203
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=22.99 E-value=86 Score=22.80 Aligned_cols=88 Identities=13% Similarity=0.185 Sum_probs=49.3
Q ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEeeec----CCCCCC--cee-E-EEEeCCeEEEEEecCCCCCCCCCCCCCCCce
Q 029285 75 SVHHVGILCENLERSLEFYQNILGLEINEAR----PHDKLP--YRG-A-WLWVGAEMIHLMELPNPDPLSGRPEHGGRDR 146 (196)
Q Consensus 75 ~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~----~~~~~~--~~~-~-~l~~g~~~l~l~~~~~~~~~~~~p~~~~~~~ 146 (196)
.++-+.+.|++.+.+.+-..+ -||.+.... +.++.+ ... + -+..-+..+..+..--. +. .-.
T Consensus 41 dFGIiRmvV~~~d~A~~~Lee-~gF~Vr~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~-------ek--~KA 110 (142)
T COG4747 41 DFGIIRMVVDRPDEAHSVLEE-AGFTVRETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVT-------EK--QKA 110 (142)
T ss_pred CcceEEEEcCChHHHHHHHHH-CCcEEEeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeee-------cC--ceE
Confidence 355677889999999999998 899876421 001100 000 0 00000111111110000 00 113
Q ss_pred EEEEEECCHHHHHHHHHHCCCeEEee
Q 029285 147 HTCIAIRDVSKLKMILDKAGISYTLS 172 (196)
Q Consensus 147 hi~f~v~dl~~~~~~l~~~G~~~~~~ 172 (196)
-+.+.++|++++...|++.|+.+...
T Consensus 111 lli~r~ed~d~~~~aLed~gi~~~~~ 136 (142)
T COG4747 111 LLIVRVEDIDRAIKALEDAGIKLIGM 136 (142)
T ss_pred EEEEEhhHHHHHHHHHHHcCCeecCh
Confidence 57889999999999999999987543
No 204
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=22.62 E-value=1.2e+02 Score=22.10 Aligned_cols=29 Identities=21% Similarity=0.448 Sum_probs=22.2
Q ss_pred eEEEEEcC-CHHHHHHHHHhccCCEEeeecC
Q 029285 77 HHVGILCE-NLERSLEFYQNILGLEINEARP 106 (196)
Q Consensus 77 ~hv~l~v~-Dl~~a~~FY~~vLG~~~~~~~~ 106 (196)
..+.|.|. +=+.|+.||+. +||.......
T Consensus 127 ~~~~L~V~~~N~~Ai~lY~~-~GF~~~~~~~ 156 (177)
T COG0456 127 DKIVLEVRESNEAAIGLYRK-LGFEVVKIRK 156 (177)
T ss_pred ceEEEEEecCChHHHHHHHH-cCCEEEeeeh
Confidence 46666665 44499999999 9999987654
No 205
>PTZ00330 acetyltransferase; Provisional
Probab=22.24 E-value=1.3e+02 Score=21.25 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=19.3
Q ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEee
Q 029285 75 SVHHVGILCENLERSLEFYQNILGLEINE 103 (196)
Q Consensus 75 ~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~ 103 (196)
++..+.+.++ +.++.||+. +||+...
T Consensus 115 ~~~~l~l~~n--~~a~~~y~k-~GF~~~~ 140 (147)
T PTZ00330 115 GCYKVILDCT--EDMVAFYKK-LGFRACE 140 (147)
T ss_pred CCCEEEEecC--hHHHHHHHH-CCCEEec
Confidence 3445566664 579999988 9999775
No 206
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.22 E-value=1.9e+02 Score=17.27 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=17.5
Q ss_pred eEEEEEECC---HHHHHHHHHHCCCeEE
Q 029285 146 RHTCIAIRD---VSKLKMILDKAGISYT 170 (196)
Q Consensus 146 ~hi~f~v~d---l~~~~~~l~~~G~~~~ 170 (196)
.++.+.+.+ ++++.+.|++.|+++.
T Consensus 45 ~~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 45 VELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred EEEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 345555554 4588999999998764
No 207
>PHA02103 hypothetical protein
Probab=21.58 E-value=2.5e+02 Score=19.93 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=25.5
Q ss_pred HHHHHHHHCCCeEEeeC--C-------CceEEEEEcCCCCeEEEE
Q 029285 157 KLKMILDKAGISYTLSK--S-------GRPAIFTRDPDANALEFT 192 (196)
Q Consensus 157 ~~~~~l~~~G~~~~~~~--~-------g~~~~~~~DPdG~~iEl~ 192 (196)
+-++.+++.|++-.+-| . .++.+...||||+.+.+.
T Consensus 90 e~ie~we~ygve~l~~p~he~~ypkn~~~yeiiyt~~d~~k~~vt 134 (135)
T PHA02103 90 EGVELWEEYGVEGLCWPCHECDYPKNFKGYEIIYTGPDGNKFKVT 134 (135)
T ss_pred hhhhHHHHhCcceeeeccccccCCccccceEEEEECCCCceEEee
Confidence 44677888888765432 1 257788899999988763
No 208
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=21.18 E-value=2e+02 Score=21.92 Aligned_cols=40 Identities=13% Similarity=0.203 Sum_probs=28.9
Q ss_pred EEECCHHHHHHHHHHCCCeEEeeCCC---ceEEEEEcCCCCeE
Q 029285 150 IAIRDVSKLKMILDKAGISYTLSKSG---RPAIFTRDPDANAL 189 (196)
Q Consensus 150 f~v~dl~~~~~~l~~~G~~~~~~~~g---~~~~~~~DPdG~~i 189 (196)
+--.|++.+.+.|++.|+++..+.-| ++.++|.--+|..+
T Consensus 112 IG~rNi~~a~~~L~~~gi~i~a~DvGG~~gR~i~f~~~tG~v~ 154 (167)
T PRK13498 112 VADKNIHAALALAEQNGLHLKAQDLGSTGHRSIIFDLWNGNVW 154 (167)
T ss_pred hHHHHHHHHHHHHHHCCCcEEEEeCCCCCCcEEEEECCCCEEE
Confidence 33459999999999999999766433 57777665566554
No 209
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=20.93 E-value=2.5e+02 Score=18.15 Aligned_cols=49 Identities=22% Similarity=0.330 Sum_probs=31.9
Q ss_pred CceEEEEEECC--HHHHHHHHHHCCCeEEe--e----------CCCceEEEEEcCCCCeEEEE
Q 029285 144 RDRHTCIAIRD--VSKLKMILDKAGISYTL--S----------KSGRPAIFTRDPDANALEFT 192 (196)
Q Consensus 144 ~~~hi~f~v~d--l~~~~~~l~~~G~~~~~--~----------~~g~~~~~~~DPdG~~iEl~ 192 (196)
....+.+.++. .+++.+.+++.+..+.. . ..+...+++.||+|.++..+
T Consensus 52 ~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~~ 114 (116)
T cd02966 52 GVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRARH 114 (116)
T ss_pred CeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCccceEEEECCCCcEEEEe
Confidence 45567777764 67777777777654321 1 12457789999999887543
No 210
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=20.86 E-value=1.5e+02 Score=20.83 Aligned_cols=38 Identities=13% Similarity=0.139 Sum_probs=25.7
Q ss_pred ECCHHHHHHHHHHCCCeEEeeC---CCceEEEEEcCCCCeE
Q 029285 152 IRDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANAL 189 (196)
Q Consensus 152 v~dl~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdG~~i 189 (196)
-.|++.+.+.|++.|+++.... ..++.++|.-.+|..+
T Consensus 63 ~rNv~~a~~~L~~~gi~I~a~dvGG~~~R~v~f~~~tG~v~ 103 (114)
T PF03975_consen 63 ERNVEAARELLAEEGIPIVAEDVGGNFGRKVRFDPATGEVW 103 (114)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEE-SSS-EEEEEETTTTEEE
T ss_pred HHHHHHHHHHHHHCCCcEEEeeCCCCCCcEEEEEcCCCEEE
Confidence 3488999999999999997653 3367777766666654
No 211
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=20.10 E-value=1.9e+02 Score=19.70 Aligned_cols=46 Identities=24% Similarity=0.354 Sum_probs=32.9
Q ss_pred CceEEEEEECCHHHHHHHHHHCCCe--EEeeC----------C------CceEEEEEcCCCCeE
Q 029285 144 RDRHTCIAIRDVSKLKMILDKAGIS--YTLSK----------S------GRPAIFTRDPDANAL 189 (196)
Q Consensus 144 ~~~hi~f~v~dl~~~~~~l~~~G~~--~~~~~----------~------g~~~~~~~DPdG~~i 189 (196)
+..-+++..++.++..+.+++.+.. +...+ . ..+..|+.||+|.+.
T Consensus 59 ~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~ 122 (124)
T PF00578_consen 59 GVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIR 122 (124)
T ss_dssp TEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEE
T ss_pred eEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEE
Confidence 5567888888888888888877654 33221 1 357899999999875
Done!