BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029286
(196 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224128656|ref|XP_002320386.1| methyl binding domain protein [Populus trichocarpa]
gi|118485542|gb|ABK94623.1| unknown [Populus trichocarpa]
gi|222861159|gb|EEE98701.1| methyl binding domain protein [Populus trichocarpa]
Length = 182
Score = 256 bits (655), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 124/174 (71%), Positives = 145/174 (83%), Gaps = 4/174 (2%)
Query: 2 EDKQETLKTASK-PRGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVC 60
E ET KT+SK PR +RSIDTYAAQC+KC KWRVI + EEYEEIR K+ E PFVC
Sbjct: 5 ERSPETPKTSSKNPRVA---VRSIDTYAAQCDKCLKWRVIATEEEYEEIRSKMEESPFVC 61
Query: 61 DRKPGVSCEDPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKK 120
+RKPGVSC+DPADIEY+A+R WVIDRPGIPKTP GFKRSLVLR+DFSKMDAYYITPTGKK
Sbjct: 62 NRKPGVSCDDPADIEYNATRTWVIDRPGIPKTPEGFKRSLVLRRDFSKMDAYYITPTGKK 121
Query: 121 LRTLNEVAGFLAANPEYSDVSLSDFTFSVPKVMDDTIPEDVVKKGSASSDAKRK 174
LRT NE+A F+ ANP+Y DV+LSDF F+ PKVM+DTIPED V+K S+S + ++
Sbjct: 122 LRTRNEIAAFIDANPKYKDVNLSDFNFTSPKVMEDTIPEDAVRKVSSSGNGNKR 175
>gi|224117174|ref|XP_002331766.1| methyl binding domain protein [Populus trichocarpa]
gi|224117178|ref|XP_002331767.1| hypothetical protein POPTRDRAFT_585558 [Populus trichocarpa]
gi|222874359|gb|EEF11490.1| methyl binding domain protein [Populus trichocarpa]
gi|222874360|gb|EEF11491.1| hypothetical protein POPTRDRAFT_585558 [Populus trichocarpa]
Length = 182
Score = 251 bits (642), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 119/173 (68%), Positives = 142/173 (82%), Gaps = 2/173 (1%)
Query: 2 EDKQETLKTASKPRGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCD 61
E ET KT+ P+ +RSIDTYAAQC+KC KWRVI + EEYEEIR K+ E P+VCD
Sbjct: 5 ERSPETPKTS--PKNPRVAVRSIDTYAAQCDKCLKWRVIPTEEEYEEIRSKMEENPYVCD 62
Query: 62 RKPGVSCEDPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKL 121
RKPGVSC+DPADIEY+A+R WVIDRPG+PKTP GFKRSLVLR+DFSKMDAYYITPTGKKL
Sbjct: 63 RKPGVSCDDPADIEYNATRTWVIDRPGVPKTPEGFKRSLVLRRDFSKMDAYYITPTGKKL 122
Query: 122 RTLNEVAGFLAANPEYSDVSLSDFTFSVPKVMDDTIPEDVVKKGSASSDAKRK 174
RT NE+A F+ ANP+Y DV+LS F F+ PKVM+DTIPED V+K +S++ +K
Sbjct: 123 RTRNEIAAFIEANPKYKDVNLSAFNFTSPKVMEDTIPEDAVRKVPSSANGNKK 175
>gi|255567630|ref|XP_002524794.1| DNA binding protein, putative [Ricinus communis]
gi|223535978|gb|EEF37637.1| DNA binding protein, putative [Ricinus communis]
Length = 160
Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 114/153 (74%), Positives = 133/153 (86%), Gaps = 1/153 (0%)
Query: 21 IRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCEDPADIEYDASR 80
+RS+DTYAAQCEKC KWRVI + EEYEEIR KI E PF C+RKPG+SCEDPADIE DASR
Sbjct: 1 MRSVDTYAAQCEKCMKWRVIETEEEYEEIRSKIVENPFYCNRKPGISCEDPADIECDASR 60
Query: 81 VWVIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDV 140
WVID+PG+PKTPGGFKRSLVLR+DFSKMDAYYITPTGKKLRT NE+A FL ANP+Y V
Sbjct: 61 TWVIDKPGLPKTPGGFKRSLVLRRDFSKMDAYYITPTGKKLRTRNEIAAFLEANPKYKGV 120
Query: 141 SLSDFTFSVPKVMDDTIPEDVVKKGSASSDAKR 173
S+ DF F+ PKVM++T+PED VKK +AS+ +K+
Sbjct: 121 SIEDFNFTSPKVMEETVPED-VKKATASASSKK 152
>gi|297799740|ref|XP_002867754.1| hypothetical protein ARALYDRAFT_914336 [Arabidopsis lyrata subsp.
lyrata]
gi|297313590|gb|EFH44013.1| hypothetical protein ARALYDRAFT_914336 [Arabidopsis lyrata subsp.
lyrata]
Length = 176
Score = 220 bits (560), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 105/183 (57%), Positives = 135/183 (73%), Gaps = 12/183 (6%)
Query: 1 MEDKQETLKTASKP---RGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIP 57
M+D+ +T K A KP + G P RSID +A QCEKC KWR I + +EYEEIR +I E P
Sbjct: 1 MDDQSQTEKLA-KPILKKKAGTPGRSIDVFAVQCEKCLKWRQIGTQDEYEEIRSRIQEDP 59
Query: 58 FVCDRKPGVSCEDPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPT 117
+VC++K G+SCED D+ YD+SR WVID+PG+PKTP GFKRSL+LRKD+SKMDAYYITPT
Sbjct: 60 YVCEKKEGISCEDAGDLNYDSSRTWVIDKPGLPKTPRGFKRSLILRKDYSKMDAYYITPT 119
Query: 118 GKKLRTLNEVAGFLAANPEYSDVSLSDFTFSVPKVMDDTIPEDVVKKGSASSDAKRKPKT 177
GKKL++ NE+A F+ AN +Y L DF F+VPKVM++T+P ++ + R PKT
Sbjct: 120 GKKLKSRNEIAAFIDANQDYKYALLGDFNFTVPKVMEETVPNGII--------SDRTPKT 171
Query: 178 SKG 180
SKG
Sbjct: 172 SKG 174
>gi|15229373|ref|NP_191862.1| methyl-CPG-binding domain 4 protein [Arabidopsis thaliana]
gi|75181050|sp|Q9LYB9.1|MBD4_ARATH RecName: Full=Methyl-CpG-binding domain-containing protein 4;
Short=AtMBD4; Short=MBD04; AltName:
Full=Methyl-CpG-binding protein MBD4
gi|7573432|emb|CAB87748.1| putative protein [Arabidopsis thaliana]
gi|34365655|gb|AAQ65139.1| At3g63030 [Arabidopsis thaliana]
gi|51971397|dbj|BAD44363.1| unknown protein [Arabidopsis thaliana]
gi|332646905|gb|AEE80426.1| methyl-CPG-binding domain 4 protein [Arabidopsis thaliana]
Length = 186
Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 97/141 (68%), Positives = 117/141 (82%)
Query: 20 PIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCEDPADIEYDAS 79
P R IDTYAAQC+ C KWRVI+S EEYE+IR K+ E PF C +K G+SCE+PADI+YD+S
Sbjct: 21 PGRLIDTYAAQCDNCHKWRVIDSQEEYEDIRSKMLEDPFNCQKKQGMSCEEPADIDYDSS 80
Query: 80 RVWVIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSD 139
R WVID+PG+PKTP GFKRSLVLRKD+SKMD YY TPTGKKLR+ NE+A F+ ANPE+ +
Sbjct: 81 RTWVIDKPGLPKTPKGFKRSLVLRKDYSKMDTYYFTPTGKKLRSRNEIAAFVEANPEFRN 140
Query: 140 VSLSDFTFSVPKVMDDTIPED 160
L DF F+VPKVM+DT+P D
Sbjct: 141 APLGDFNFTVPKVMEDTVPPD 161
>gi|297817640|ref|XP_002876703.1| methyl-CpG-binding domain 4 [Arabidopsis lyrata subsp. lyrata]
gi|297322541|gb|EFH52962.1| methyl-CpG-binding domain 4 [Arabidopsis lyrata subsp. lyrata]
Length = 182
Score = 216 bits (551), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 100/150 (66%), Positives = 121/150 (80%), Gaps = 1/150 (0%)
Query: 20 PIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCEDPADIEYDAS 79
P R IDTYAAQCE C KWRVI+S EEYE+IR K+ E PF C +K G+SCE+PAD++YD+S
Sbjct: 20 PGRLIDTYAAQCENCHKWRVIDSQEEYEDIRSKMLEDPFNCQKKQGMSCEEPADLDYDSS 79
Query: 80 RVWVIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSD 139
R WVID+PG+PKTP GF+RSLVLRKD+SKMD YY TPTGKKLR+ NE+A F+ ANPE+ +
Sbjct: 80 RTWVIDKPGLPKTPQGFRRSLVLRKDYSKMDTYYFTPTGKKLRSRNEIAAFVEANPEFKN 139
Query: 140 VSLSDFTFSVPKVMDDTIPEDVVKKGSASS 169
L DF F+VPKVM+DT+P V K GS S
Sbjct: 140 APLGDFNFTVPKVMEDTVPP-VPKLGSPIS 168
>gi|356535711|ref|XP_003536387.1| PREDICTED: methyl-CpG-binding domain-containing protein 4-like
[Glycine max]
Length = 193
Score = 215 bits (548), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 98/150 (65%), Positives = 118/150 (78%)
Query: 23 SIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCEDPADIEYDASRVW 82
S+D YAAQC+ C KWR I++ EE+EEIR K+AE PF+C RK SC++P DI+YD+SR W
Sbjct: 38 SVDIYAAQCKNCLKWREIDTQEEFEEIRSKVAEEPFLCSRKANSSCDEPGDIKYDSSRTW 97
Query: 83 VIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSL 142
VID+P +PKTP GFKRSLVLRKD+SK+DAYYITP GKKLRT NE+A FL NPE+ VS
Sbjct: 98 VIDKPNLPKTPQGFKRSLVLRKDYSKLDAYYITPAGKKLRTRNEIAAFLKDNPEFKGVSA 157
Query: 143 SDFTFSVPKVMDDTIPEDVVKKGSASSDAK 172
SDF FS PK+M DTIPE V +K SA+ K
Sbjct: 158 SDFDFSSPKIMQDTIPEVVEQKDSANKKVK 187
>gi|388511439|gb|AFK43781.1| unknown [Lotus japonicus]
Length = 180
Score = 215 bits (547), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 99/151 (65%), Positives = 118/151 (78%)
Query: 23 SIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCEDPADIEYDASRVW 82
SID YAAQC KC KWRVI++ +E+EEIR K+++ PF C RK SC+DPADIEYD+SR W
Sbjct: 25 SIDVYAAQCIKCLKWRVIDTQQEFEEIRHKVSQEPFDCSRKANCSCDDPADIEYDSSRTW 84
Query: 83 VIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSL 142
VID+P +PKTP GFKRSLVLRKD+SK+DAYYITPTGKKLRT NE A FL +PE +S
Sbjct: 85 VIDKPNLPKTPEGFKRSLVLRKDYSKLDAYYITPTGKKLRTRNEAAAFLKDHPELQGISA 144
Query: 143 SDFTFSVPKVMDDTIPEDVVKKGSASSDAKR 173
DF FS PK+M DTIPE V +K SA+ K+
Sbjct: 145 QDFDFSCPKIMQDTIPEIVEQKDSANKKVKK 175
>gi|225436873|ref|XP_002273070.1| PREDICTED: methyl-CpG-binding domain-containing protein 4-like
isoform 1 [Vitis vinifera]
Length = 179
Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 101/176 (57%), Positives = 124/176 (70%)
Query: 5 QETLKTASKPRGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKP 64
Q KT K R SI YA QCE C KWR+I++ EEYEEIR + E PFVC +K
Sbjct: 2 QPMEKTKGKKRKSALVRSSIGAYAVQCEACLKWRLIDTEEEYEEIRSRFIEEPFVCSKKA 61
Query: 65 GVSCEDPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTL 124
VSCEDP DIEYDA+R W D+P +PKTP GF+R LVLRKDFSKMDAYYITPTGKK+R L
Sbjct: 62 DVSCEDPTDIEYDATRTWAADKPNVPKTPKGFQRDLVLRKDFSKMDAYYITPTGKKVRAL 121
Query: 125 NEVAGFLAANPEYSDVSLSDFTFSVPKVMDDTIPEDVVKKGSASSDAKRKPKTSKG 180
+E+A +L++NP+ D+S SDF F VPK+M DTIP + +K S S K++ K+ G
Sbjct: 122 SEIAAYLSSNPDCKDLSPSDFNFMVPKIMADTIPAHIERKVSTSGSNKKRKKSENG 177
>gi|358248398|ref|NP_001239875.1| uncharacterized protein LOC100802350 [Glycine max]
gi|255641529|gb|ACU21038.1| unknown [Glycine max]
Length = 177
Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 96/150 (64%), Positives = 117/150 (78%)
Query: 23 SIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCEDPADIEYDASRVW 82
S+D YAAQC+ C KWR I++ EE+EEIR K+ E PF+C RK SC++P DIEYD++R W
Sbjct: 22 SVDIYAAQCKNCLKWREIDTQEEFEEIRSKVTEEPFLCSRKANSSCDEPGDIEYDSTRTW 81
Query: 83 VIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSL 142
VID+P +PKTP GFKRSLVLRKD+SK+DAYYITP GKKLRT NE+A FL NPE+ VS
Sbjct: 82 VIDKPNLPKTPQGFKRSLVLRKDYSKLDAYYITPAGKKLRTRNEIAAFLKDNPEFKGVSA 141
Query: 143 SDFTFSVPKVMDDTIPEDVVKKGSASSDAK 172
SDF FS PK+M DTIPE + +K SA+ K
Sbjct: 142 SDFDFSSPKIMQDTIPEIIEQKDSANKKVK 171
>gi|296086678|emb|CBI32313.3| unnamed protein product [Vitis vinifera]
Length = 176
Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 100/172 (58%), Positives = 123/172 (71%)
Query: 9 KTASKPRGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSC 68
KT K R SI YA QCE C KWR+I++ EEYEEIR + E PFVC +K VSC
Sbjct: 3 KTKGKKRKSALVRSSIGAYAVQCEACLKWRLIDTEEEYEEIRSRFIEEPFVCSKKADVSC 62
Query: 69 EDPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVA 128
EDP DIEYDA+R W D+P +PKTP GF+R LVLRKDFSKMDAYYITPTGKK+R L+E+A
Sbjct: 63 EDPTDIEYDATRTWAADKPNVPKTPKGFQRDLVLRKDFSKMDAYYITPTGKKVRALSEIA 122
Query: 129 GFLAANPEYSDVSLSDFTFSVPKVMDDTIPEDVVKKGSASSDAKRKPKTSKG 180
+L++NP+ D+S SDF F VPK+M DTIP + +K S S K++ K+ G
Sbjct: 123 AYLSSNPDCKDLSPSDFNFMVPKIMADTIPAHIERKVSTSGSNKKRKKSENG 174
>gi|147788831|emb|CAN77824.1| hypothetical protein VITISV_015457 [Vitis vinifera]
Length = 200
Score = 213 bits (541), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 100/173 (57%), Positives = 123/173 (71%)
Query: 5 QETLKTASKPRGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKP 64
Q KT K R SI YA QCE C KWR+I++ EEYEEIR + E PFVC +K
Sbjct: 23 QPMEKTKGKKRKSALVRSSIGAYAVQCEACLKWRLIDTEEEYEEIRSRFIEEPFVCSKKA 82
Query: 65 GVSCEDPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTL 124
VSCEDP DIEYDA+R W D+P +PKTP GF+R LVLRKDFSKMDAYYITPTGKK+R L
Sbjct: 83 DVSCEDPTDIEYDATRTWAADKPNVPKTPKGFQRDLVLRKDFSKMDAYYITPTGKKVRAL 142
Query: 125 NEVAGFLAANPEYSDVSLSDFTFSVPKVMDDTIPEDVVKKGSASSDAKRKPKT 177
+E+A +L++NP+ D+S SDF F VPK+M DTIP + +K S S K++ K+
Sbjct: 143 SEIAAYLSSNPDCKDLSPSDFNFMVPKIMADTIPAHIERKVSTSGSNKKRKKS 195
>gi|388503158|gb|AFK39645.1| unknown [Lotus japonicus]
Length = 176
Score = 213 bits (541), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 97/151 (64%), Positives = 117/151 (77%)
Query: 23 SIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCEDPADIEYDASRVW 82
S+D YA QC KC KWRV+++ EE+EE R K E PF C RK SC+DPADIEYD+SR W
Sbjct: 24 SVDIYATQCIKCLKWRVVDTQEEFEEFRQKANEEPFDCSRKANCSCDDPADIEYDSSRTW 83
Query: 83 VIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSL 142
VID+P +PKTP GF+RSLVLRKD+SK+DAYYITPTGKKLRT NE+A FL +PE+ +S
Sbjct: 84 VIDKPNVPKTPQGFRRSLVLRKDYSKLDAYYITPTGKKLRTRNEIAAFLKEHPEFEGISA 143
Query: 143 SDFTFSVPKVMDDTIPEDVVKKGSASSDAKR 173
DF FS PKVM +TIPE + +K SAS AK+
Sbjct: 144 QDFDFSSPKVMHETIPEGLEQKASASKIAKK 174
>gi|449462288|ref|XP_004148873.1| PREDICTED: methyl-CpG-binding domain-containing protein 4-like
[Cucumis sativus]
gi|449491535|ref|XP_004158929.1| PREDICTED: methyl-CpG-binding domain-containing protein 4-like
[Cucumis sativus]
Length = 181
Score = 209 bits (533), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 92/154 (59%), Positives = 120/154 (77%)
Query: 24 IDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCEDPADIEYDASRVWV 83
+ +AAQCE+CFKWR+I++ EEYE IR KI E PF C RK SCEDP DI+YD +R W
Sbjct: 20 VGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTSCEDPPDIDYDTTRTWG 79
Query: 84 IDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLS 143
ID+P IPKTP GF R LVLRK+F+K DAYY+TPTGK +R+ EV F+ ANP+Y D++LS
Sbjct: 80 IDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEVLAFVEANPQYKDIALS 139
Query: 144 DFTFSVPKVMDDTIPEDVVKKGSASSDAKRKPKT 177
+F+F+VPK+M++T+PE ++K+G SS AKR KT
Sbjct: 140 NFSFAVPKIMEETVPESILKEGLNSSSAKRIKKT 173
>gi|2827551|emb|CAA16559.1| predicted protein [Arabidopsis thaliana]
gi|7269120|emb|CAB79229.1| predicted protein [Arabidopsis thaliana]
Length = 566
Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 89/146 (60%), Positives = 114/146 (78%)
Query: 17 GGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCEDPADIEY 76
G P RSID +A QCEKC KWR I++ +EYE+IR ++ E PF C K GVSCED D+ Y
Sbjct: 39 AGTPGRSIDVFAVQCEKCMKWRKIDTQDEYEDIRSRVQEDPFFCKTKEGVSCEDVGDLNY 98
Query: 77 DASRVWVIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAANPE 136
D+SR WVID+PG+P+TP GFKRSL+LRKD+SKMDAYYITPTGKKL++ NE+A F+ AN +
Sbjct: 99 DSSRTWVIDKPGLPRTPRGFKRSLILRKDYSKMDAYYITPTGKKLKSRNEIAAFIDANQD 158
Query: 137 YSDVSLSDFTFSVPKVMDDTIPEDVV 162
Y L DF F+VPKVM++T+P ++
Sbjct: 159 YKYALLGDFNFTVPKVMEETVPSGIL 184
>gi|30685914|ref|NP_567667.2| methyl-CPG-binding domain 1 [Arabidopsis thaliana]
gi|75110947|sp|Q5XEN5.1|MBD1_ARATH RecName: Full=Methyl-CpG-binding domain-containing protein 1;
Short=AtMBD1; Short=MBD01; AltName:
Full=Methyl-CpG-binding protein MBD1
gi|54261715|gb|AAV31161.1| At4g22745 [Arabidopsis thaliana]
gi|58331793|gb|AAW70394.1| At4g22745 [Arabidopsis thaliana]
gi|332659248|gb|AEE84648.1| methyl-CPG-binding domain 1 [Arabidopsis thaliana]
Length = 204
Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 95/170 (55%), Positives = 123/170 (72%), Gaps = 8/170 (4%)
Query: 15 RGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCEDPADI 74
+ G P RSID +A QCEKC KWR I++ +EYE+IR ++ E PF C K GVSCED D+
Sbjct: 43 KKAGTPGRSIDVFAVQCEKCMKWRKIDTQDEYEDIRSRVQEDPFFCKTKEGVSCEDVGDL 102
Query: 75 EYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAAN 134
YD+SR WVID+PG+P+TP GFKRSL+LRKD+SKMDAYYITPTGKKL++ NE+A F+ AN
Sbjct: 103 NYDSSRTWVIDKPGLPRTPRGFKRSLILRKDYSKMDAYYITPTGKKLKSRNEIAAFIDAN 162
Query: 135 PEYSDVSLSDFTFSVPKVMDDTIPEDVVKKGSASSDAKRKPKTSKGVVGD 184
+Y L DF F+VPKVM++T+P ++ + R PK S+ V D
Sbjct: 163 QDYKYALLGDFNFTVPKVMEETVPSGIL--------SDRTPKPSRKVTID 204
>gi|357442669|ref|XP_003591612.1| hypothetical protein MTR_1g089750 [Medicago truncatula]
gi|355480660|gb|AES61863.1| hypothetical protein MTR_1g089750 [Medicago truncatula]
gi|388499614|gb|AFK37873.1| unknown [Medicago truncatula]
Length = 176
Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 96/151 (63%), Positives = 118/151 (78%), Gaps = 1/151 (0%)
Query: 23 SIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCEDPADIEYDASRVW 82
S+D YAAQC+ C KWRVI++ EE+EEIR KI PF C +K SC+DPADIEYD+SR W
Sbjct: 20 SVDIYAAQCKLCMKWRVIDTQEEFEEIRHKIIRDPFDCSKKANRSCDDPADIEYDSSRTW 79
Query: 83 VIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSL 142
VID+P IPKTP GFK+ LVLRKD+SK+D+YYITPTGKKLRT NE+A +L +P+ S VS
Sbjct: 80 VIDKPNIPKTPQGFKKILVLRKDYSKLDSYYITPTGKKLRTRNEIAAYLKDHPQPSGVSA 139
Query: 143 SDFTFSVPKVMDDTIPEDV-VKKGSASSDAK 172
+DF FS PK+M DTIPE + +K SA+ AK
Sbjct: 140 ADFDFSSPKIMQDTIPEFIEQQKDSANKKAK 170
>gi|357498447|ref|XP_003619512.1| hypothetical protein MTR_6g055750 [Medicago truncatula]
gi|355494527|gb|AES75730.1| hypothetical protein MTR_6g055750 [Medicago truncatula]
Length = 174
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 88/153 (57%), Positives = 109/153 (71%), Gaps = 1/153 (0%)
Query: 21 IRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCEDPADIEYDASR 80
I D Y AQC+ C K+R I++ EE+EEI KI + PF C +K SC+DPADIEYD+SR
Sbjct: 16 ISQNDIYVAQCKLCMKFREIDTQEEFEEILHKIKQEPFDCSKKANCSCDDPADIEYDSSR 75
Query: 81 VWVIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDV 140
WV +P IPKTP GFKR VLR D+SK+D+YYITPTGK+LR+ NE+A +L P+ S V
Sbjct: 76 TWVKYKPNIPKTPKGFKRISVLRDDYSKLDSYYITPTGKQLRSRNEIASYLKDLPQPSGV 135
Query: 141 SLSDFTFSVPKVMDDTIPEDVVK-KGSASSDAK 172
S DF FS PKVM DT+PE +VK K A+ AK
Sbjct: 136 STLDFDFSSPKVMQDTVPEFIVKPKDFANKKAK 168
>gi|312283175|dbj|BAJ34453.1| unnamed protein product [Thellungiella halophila]
Length = 106
Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 74/106 (69%), Positives = 91/106 (85%), Gaps = 1/106 (0%)
Query: 53 IAEIPFVCDRKPGVSCEDPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSKMDAY 112
+ E PF CD+K VSC+DPAD++YD+SR WVID+PG+PKTP GFKRSLVLRKD+SKMD Y
Sbjct: 1 MLEDPFSCDKK-HVSCQDPADLDYDSSRTWVIDKPGLPKTPKGFKRSLVLRKDYSKMDTY 59
Query: 113 YITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSVPKVMDDTIP 158
YITPTGKKLR+ NEVA ++ ANPE+ + L DFTF+VPKVM+DT+P
Sbjct: 60 YITPTGKKLRSRNEVASYVEANPEFKNAPLGDFTFTVPKVMEDTLP 105
>gi|222631548|gb|EEE63680.1| hypothetical protein OsJ_18498 [Oryza sativa Japonica Group]
Length = 267
Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/152 (48%), Positives = 101/152 (66%), Gaps = 1/152 (0%)
Query: 15 RGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCEDPADI 74
R G SI YA QC +C KWR + + +E+E IR E P+ C R+P SCEDPADI
Sbjct: 100 RKRGSSTDSIGMYAVQCCECHKWRKVPTKDEFETIRENFTEEPWHCSRRPDCSCEDPADI 159
Query: 75 EYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAAN 134
EYD+SR+WV+D+P IPK P G +R +++R D SKMD YY+ P GK++R EV FL AN
Sbjct: 160 EYDSSRIWVLDKPNIPKPPAGTERLVIMRGDLSKMDTYYVMPNGKRVRCTAEVDKFLEAN 219
Query: 135 PEYSD-VSLSDFTFSVPKVMDDTIPEDVVKKG 165
P+Y D S+ F+F+ PK++++T+ + V K
Sbjct: 220 PQYKDRFSVESFSFTTPKIVEETVSHNSVWKS 251
>gi|297604484|ref|NP_001055505.2| Os05g0404600 [Oryza sativa Japonica Group]
gi|255676354|dbj|BAF17419.2| Os05g0404600, partial [Oryza sativa Japonica Group]
Length = 168
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 108/165 (65%), Gaps = 4/165 (2%)
Query: 15 RGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCEDPADI 74
R G SI YA QC +C KWR + + +E+E IR E P+ C R+P SCEDPADI
Sbjct: 1 RKRGSSTDSIGMYAVQCCECHKWRKVPTKDEFETIRENFTEEPWHCSRRPDCSCEDPADI 60
Query: 75 EYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAAN 134
EYD+SR+WV+D+P IPK P G +R +++R D SKMD YY+ P GK++R EV FL AN
Sbjct: 61 EYDSSRIWVLDKPNIPKPPAGTERLVIMRGDLSKMDTYYVMPNGKRVRCTAEVDKFLEAN 120
Query: 135 PEYSD-VSLSDFTFSVPKVMDDTIPEDVVKKGSASSDAKRKPKTS 178
P+Y D S+ F+F+ PK++++T+ + V K S AK++ K +
Sbjct: 121 PQYKDRFSVESFSFTTPKIVEETVSHNSVWK---SGKAKKQDKIN 162
>gi|125552295|gb|EAY98004.1| hypothetical protein OsI_19918 [Oryza sativa Indica Group]
Length = 271
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/152 (48%), Positives = 101/152 (66%), Gaps = 1/152 (0%)
Query: 15 RGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCEDPADI 74
R G SI YA QC +C KWR + + +E+E IR E P+ C R+P SCEDPADI
Sbjct: 104 RKRGSSTDSIGMYAVQCCECHKWRKVPTKDEFETIRENFTEEPWHCSRRPDCSCEDPADI 163
Query: 75 EYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAAN 134
EYD+SR+WV+D+P IPK P G +R +++R D SKMD YY+ P GK++R EV FL AN
Sbjct: 164 EYDSSRIWVLDKPNIPKPPAGTERLVIMRGDLSKMDTYYVMPNGKRVRCTAEVDKFLEAN 223
Query: 135 PEYSD-VSLSDFTFSVPKVMDDTIPEDVVKKG 165
P+Y D S+ F+F+ PK++++T+ + V K
Sbjct: 224 PQYKDRFSVESFSFTTPKIVEETVSHNSVWKS 255
>gi|50878306|gb|AAT85081.1| putative methyl-binding domain protein [Oryza sativa Japonica
Group]
gi|215740483|dbj|BAG97139.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 157
Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/153 (47%), Positives = 104/153 (67%), Gaps = 4/153 (2%)
Query: 27 YAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCEDPADIEYDASRVWVIDR 86
YA QC +C KWR + + +E+E IR E P+ C R+P SCEDPADIEYD+SR+WV+D+
Sbjct: 2 YAVQCCECHKWRKVPTKDEFETIRENFTEEPWHCSRRPDCSCEDPADIEYDSSRIWVLDK 61
Query: 87 PGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSD-VSLSDF 145
P IPK P G +R +++R D SKMD YY+ P GK++R EV FL ANP+Y D S+ F
Sbjct: 62 PNIPKPPAGTERLVIMRGDLSKMDTYYVMPNGKRVRCTAEVDKFLEANPQYKDRFSVESF 121
Query: 146 TFSVPKVMDDTIPEDVVKKGSASSDAKRKPKTS 178
+F+ PK++++T+ + V K S AK++ K +
Sbjct: 122 SFTTPKIVEETVSHNSVWK---SGKAKKQDKIN 151
>gi|242090489|ref|XP_002441077.1| hypothetical protein SORBIDRAFT_09g019910 [Sorghum bicolor]
gi|241946362|gb|EES19507.1| hypothetical protein SORBIDRAFT_09g019910 [Sorghum bicolor]
Length = 180
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/144 (48%), Positives = 98/144 (68%), Gaps = 2/144 (1%)
Query: 15 RGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCEDPADI 74
R G S+ YA QC KC+KW + EE+E +R + P+ C R+P SC D ADI
Sbjct: 17 RKRGSTKDSVALYAVQCYKCYKWSTV-PKEEFETLRENFTKDPWFCSRRPDCSCADDADI 75
Query: 75 EYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAAN 134
EYD+SR+WV+D+P IPK P G +R ++LR D+SKMD YY+ P GK+ R +V FL AN
Sbjct: 76 EYDSSRIWVLDKPNIPKPPPGTERLVILRSDYSKMDTYYVMPNGKRARCAGDVDKFLEAN 135
Query: 135 PEYSD-VSLSDFTFSVPKVMDDTI 157
PEY + +S+SDF+F+ PKV+++T+
Sbjct: 136 PEYKNSISVSDFSFAPPKVVEETV 159
>gi|162461333|ref|NP_001105172.1| methyl-binding domain protein MBD101 [Zea mays]
gi|13936238|gb|AAK40305.1| methyl-binding domain protein MBD101 [Zea mays]
gi|195658397|gb|ACG48666.1| methyl-binding domain protein MBD101 [Zea mays]
gi|224032853|gb|ACN35502.1| unknown [Zea mays]
gi|413949329|gb|AFW81978.1| methyl-binding domain protein MBD101 [Zea mays]
Length = 177
Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 95/136 (69%), Gaps = 2/136 (1%)
Query: 23 SIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCEDPADIEYDASRVW 82
S+ YA QC KC+KW + EE+E +R + P+ C R+P SCED ADIEYD+SR+W
Sbjct: 22 SVALYAVQCYKCYKWSTV-PKEEFETLRENFTKDPWFCSRRPDSSCEDDADIEYDSSRIW 80
Query: 83 VIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSD-VS 141
V+D+P IPK P +R +V+R D+SKMD YY+ P GK+ R +V FL ANPEY D +S
Sbjct: 81 VLDKPNIPKPPPETERLVVMRGDYSKMDTYYVMPNGKRARCAGDVDKFLEANPEYKDRIS 140
Query: 142 LSDFTFSVPKVMDDTI 157
SDF+F+ PKV+++T+
Sbjct: 141 ASDFSFAPPKVVEETV 156
>gi|414870394|tpg|DAA48951.1| TPA: hypothetical protein ZEAMMB73_965630 [Zea mays]
Length = 165
Score = 148 bits (374), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 95/136 (69%), Gaps = 2/136 (1%)
Query: 23 SIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCEDPADIEYDASRVW 82
S+ YA QC KC+KW + EE+E +R + P+ C R+P SCED ADIEYD+SR+W
Sbjct: 10 SVALYAVQCYKCYKWSTV-PKEEFETLRENFTKDPWFCSRRPDSSCEDDADIEYDSSRIW 68
Query: 83 VIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSD-VS 141
V+D+P IPK P +R +V+R D+SKMD YY+ P GK+ R +V FL ANPEY D +S
Sbjct: 69 VLDKPNIPKPPPETERLVVMRGDYSKMDTYYVMPNGKRARCAGDVDKFLEANPEYKDRIS 128
Query: 142 LSDFTFSVPKVMDDTI 157
SDF+F+ PKV+++T+
Sbjct: 129 ASDFSFAPPKVVEETV 144
>gi|242090487|ref|XP_002441076.1| hypothetical protein SORBIDRAFT_09g019900 [Sorghum bicolor]
gi|241946361|gb|EES19506.1| hypothetical protein SORBIDRAFT_09g019900 [Sorghum bicolor]
Length = 180
Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 92/139 (66%), Gaps = 2/139 (1%)
Query: 23 SIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCEDPADIEYDASRVW 82
S+ YA QC KC+KW + EE+E +R + P+ C R+P SCED ADIEYD S +W
Sbjct: 25 SVGLYAVQCHKCYKWSTV-PKEEFETLRENFTKDPWFCSRRPDCSCEDDADIEYDNSHIW 83
Query: 83 VIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSD-VS 141
V D P IPK P G +R +++R D+S+MD YY+ P GK + +V FL ANPEY + +S
Sbjct: 84 VFDNPNIPKPPPGTERLVIMRSDYSEMDPYYVMPNGKHAKCAGDVDKFLEANPEYKNRMS 143
Query: 142 LSDFTFSVPKVMDDTIPED 160
SDF+F+ KV+++T+P +
Sbjct: 144 ASDFSFAPLKVVEETVPRN 162
>gi|326519819|dbj|BAK00282.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 193
Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 71/151 (47%), Positives = 103/151 (68%), Gaps = 4/151 (2%)
Query: 10 TASKPRGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCE 69
++ K RG E SI YA QC +C KWR +++ +E+E IR E P+ C+++P SCE
Sbjct: 14 SSQKKRGATE---SIGLYAVQCCECHKWRTVSTKDEFETIRENFTEDPWFCNKRPECSCE 70
Query: 70 DPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAG 129
DP DIEYD+SR+WVID+P IPK P +R +++R D SKMD YY+ P GK+ R + +V
Sbjct: 71 DPPDIEYDSSRIWVIDKPNIPKPPPKTERLVIMRGDLSKMDIYYVLPNGKRARGIGDVQK 130
Query: 130 FLAANPEYSD-VSLSDFTFSVPKVMDDTIPE 159
FL NPEY D +S F+F+VPK++++T+ +
Sbjct: 131 FLDTNPEYKDQISAESFSFTVPKIVEETVSQ 161
>gi|326494492|dbj|BAJ90515.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 193
Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 71/151 (47%), Positives = 103/151 (68%), Gaps = 4/151 (2%)
Query: 10 TASKPRGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCE 69
++ K RG E SI YA QC +C KWR +++ +E+E IR E P+ C+++P SCE
Sbjct: 14 SSQKKRGATE---SIGLYAVQCCECHKWRTVSTKDEFETIRENFTEDPWFCNKRPECSCE 70
Query: 70 DPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAG 129
DP DIEYD+SR+WVID+P IPK P +R +++R D SKMD YY+ P GK+ R + +V
Sbjct: 71 DPPDIEYDSSRIWVIDKPNIPKPPPKTERLVIMRGDLSKMDIYYVLPNGKRARGIGDVLK 130
Query: 130 FLAANPEYSD-VSLSDFTFSVPKVMDDTIPE 159
FL NPEY D +S F+F+VPK++++T+ +
Sbjct: 131 FLDTNPEYKDQISAESFSFTVPKIVEETVSQ 161
>gi|134285524|gb|ABO69707.1| MBD1 [Triticum aestivum]
Length = 193
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 71/151 (47%), Positives = 101/151 (66%), Gaps = 4/151 (2%)
Query: 10 TASKPRGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCE 69
++ K RG E SI YA QC +C KWR +++ +E+E IR E P+ C ++P SCE
Sbjct: 14 SSQKKRGATE---SIGLYAVQCCECHKWRTVSTKDEFETIRENFTEDPWSCSKRPECSCE 70
Query: 70 DPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAG 129
DP DIEYD+SR+WVID+P IPK P +R +++R D SKMD YY+ P GK+ R + +V
Sbjct: 71 DPPDIEYDSSRIWVIDKPNIPKPPPKTERLVIMRGDLSKMDIYYVLPNGKRARGIGDVQK 130
Query: 130 FLAANPEYSD-VSLSDFTFSVPKVMDDTIPE 159
FL NPEY D +S F+F+VPK+++ T+ +
Sbjct: 131 FLDTNPEYKDRISAESFSFTVPKIVEKTVSQ 161
>gi|413945315|gb|AFW77964.1| hypothetical protein ZEAMMB73_721408 [Zea mays]
Length = 193
Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 92/136 (67%), Gaps = 2/136 (1%)
Query: 23 SIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCEDPADIEYDASRVW 82
S+ YA QC KC+KWR + EE+E +R + P+ C R+P SCED ADIEYD+SR+W
Sbjct: 25 SVALYAVQCYKCYKWRTV-PKEEFETLRENFTKDPWFCSRRPDCSCEDDADIEYDSSRIW 83
Query: 83 VIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEY-SDVS 141
V+D P IPK P +R +++ D+++MD YY+ P GK+ R +V FL ANP Y S +S
Sbjct: 84 VLDTPNIPKPPPETERLVIMGGDYTRMDTYYVMPNGKRARCAGDVDKFLEANPAYKSRIS 143
Query: 142 LSDFTFSVPKVMDDTI 157
SDF F+ P+V+++T+
Sbjct: 144 ASDFDFAPPEVVEETV 159
>gi|225468218|ref|XP_002263085.1| PREDICTED: methyl-CpG-binding domain-containing protein 2 [Vitis
vinifera]
gi|297736061|emb|CBI24099.3| unnamed protein product [Vitis vinifera]
Length = 354
Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 100/159 (62%), Gaps = 12/159 (7%)
Query: 21 IRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR----KPGVSCEDPADIEY 76
+ S+ + QC CFKWR+I + E+YEEIR I E PFVC+ +P VSC+DPADI
Sbjct: 104 LPSVGAFTVQCANCFKWRLIPTKEKYEEIREHILEQPFVCETAREWRPNVSCDDPADISQ 163
Query: 77 DASRVWVIDRPGIPKTPGGFKRSLVLRKDFSK--MDAYYITPTGKKLRTLNEVAGFLAAN 134
D SR+W ID+P I + P G++R L +R + S D YY+ P+GK+LR++ EV +L +
Sbjct: 164 DGSRLWAIDKPNIAQPPAGWQRLLRIRGEGSTKFADVYYVAPSGKRLRSMVEVQKYLLEH 223
Query: 135 PEY--SDVSLSDFTFSVPKVMDDTIPEDVVKKGSASSDA 171
PEY V+LS F+F +PK + E+ V+K A +A
Sbjct: 224 PEYMVHGVTLSQFSFQIPKPLQ----ENYVRKRPARVNA 258
>gi|255570564|ref|XP_002526239.1| DNA binding protein, putative [Ricinus communis]
gi|223534433|gb|EEF36136.1| DNA binding protein, putative [Ricinus communis]
Length = 271
Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 102/167 (61%), Gaps = 8/167 (4%)
Query: 23 SIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR----KPGVSCEDPADIEYDA 78
S+ + QC KCFKWR+I + E+YEEIR I E PF C+ +P +SC DPADI D
Sbjct: 105 SVGAFTVQCAKCFKWRLIPTKEKYEEIREHILEQPFYCETAREWRPDISCNDPADISQDG 164
Query: 79 SRVWVIDRPGIPKTPGGFKRSLVLRKDFSK--MDAYYITPTGKKLRTLNEVAGFLAANPE 136
SR+W ID+P I + P G++R L +R + S D YY P+GK+LR++ E+ +L ANPE
Sbjct: 165 SRLWAIDKPNIAQPPRGWQRLLRIRGEGSSKFADVYYQAPSGKRLRSMVEIERYLMANPE 224
Query: 137 Y--SDVSLSDFTFSVPKVMDDTIPEDVVKKGSASSDAKRKPKTSKGV 181
Y + V LS F+F +P+ + + + +AS D R + S+G+
Sbjct: 225 YVQNGVKLSQFSFQIPRPLQENYVRKRPARLTASCDNIRPLEPSEGM 271
>gi|356520885|ref|XP_003529090.1| PREDICTED: methyl-CpG-binding domain-containing protein 2-like
[Glycine max]
Length = 309
Score = 139 bits (349), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 98/155 (63%), Gaps = 12/155 (7%)
Query: 21 IRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR----KPGVSCEDPADIEY 76
+ S+ + QC CFKWR+I + E+YEEIR I E PFVC + +P VSC+DP DI
Sbjct: 95 LPSVGAFTVQCASCFKWRLIPTKEKYEEIREHILEQPFVCQKAREWRPHVSCDDPEDISQ 154
Query: 77 DASRVWVIDRPGIPKTPGGFKRSLVLRKDFSK--MDAYYITPTGKKLRTLNEVAGFLAAN 134
D SRVW ID+P I + P G++R L +R + S D YYI P+GK+LR++ E+ FL +
Sbjct: 155 DGSRVWAIDKPNIAQPPAGWERLLRIRAEGSSKFADIYYIAPSGKRLRSMVEIQKFLMEH 214
Query: 135 PEYS--DVSLSDFTFSVPKVMDDTIPEDVVKKGSA 167
PEY+ V+LS F+F +P+ + E+ V+K A
Sbjct: 215 PEYTRDGVTLSQFSFQIPRPLQ----ENYVRKRPA 245
>gi|356496785|ref|XP_003517246.1| PREDICTED: methyl-CpG-binding domain-containing protein 2-like
[Glycine max]
Length = 312
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 98/155 (63%), Gaps = 12/155 (7%)
Query: 21 IRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR----KPGVSCEDPADIEY 76
+ S+ + QC C KWR+I + E+YEEIR I E PFVC + +P VSC+DP DI
Sbjct: 95 LPSVGVFTVQCASCLKWRLIPTKEKYEEIREHIIEQPFVCQKAREWRPDVSCDDPEDISQ 154
Query: 77 DASRVWVIDRPGIPKTPGGFKRSLVLRKDFSK--MDAYYITPTGKKLRTLNEVAGFLAAN 134
D SRVW ID+P I + P G++R L +R + S D YYI P+GK+LR++ EV FL +
Sbjct: 155 DGSRVWAIDKPNIAQPPAGWERLLRIRAEGSSKFADIYYIAPSGKRLRSMVEVQKFLMEH 214
Query: 135 PEYS--DVSLSDFTFSVPKVMDDTIPEDVVKKGSA 167
PEY+ V+LS F+F +P+ + E+ V+K SA
Sbjct: 215 PEYTRDGVTLSQFSFQIPRPLQ----ENYVRKRSA 245
>gi|125552296|gb|EAY98005.1| hypothetical protein OsI_19919 [Oryza sativa Indica Group]
Length = 175
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/135 (48%), Positives = 85/135 (62%), Gaps = 1/135 (0%)
Query: 24 IDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCEDPADIEYDASRVWV 83
I YA C KC KWR I + EE+E IR P+ C +K SCE P DI+YD SR+W
Sbjct: 10 ITMYAITCCKCEKWRTIPTKEEFEVIRENYPAKPWFCSKKRDCSCEHPEDIQYDTSRIWA 69
Query: 84 IDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEY-SDVSL 142
IDRP IPK P +R L++R D SKMDAYY+ P GK+ + ++ FL NPEY + + L
Sbjct: 70 IDRPNIPKPPPKTERLLIMRNDLSKMDAYYVLPNGKRAKGKPDIDRFLKENPEYAATLPL 129
Query: 143 SDFTFSVPKVMDDTI 157
S F FS PK++ +T+
Sbjct: 130 SSFNFSTPKIVKETV 144
>gi|297604486|ref|NP_001055506.2| Os05g0404700 [Oryza sativa Japonica Group]
gi|125552290|gb|EAY97999.1| hypothetical protein OsI_19913 [Oryza sativa Indica Group]
gi|222631549|gb|EEE63681.1| hypothetical protein OsJ_18499 [Oryza sativa Japonica Group]
gi|255676355|dbj|BAF17420.2| Os05g0404700 [Oryza sativa Japonica Group]
Length = 175
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/135 (48%), Positives = 85/135 (62%), Gaps = 1/135 (0%)
Query: 24 IDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCEDPADIEYDASRVWV 83
I YA C KC KWR I + EE+E IR P+ C +K SCE P DI+YD SR+W
Sbjct: 10 ITMYAITCCKCEKWRTIPTKEEFEVIRENYPAKPWFCSKKRDCSCEHPEDIQYDTSRIWA 69
Query: 84 IDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEY-SDVSL 142
IDRP IPK P +R L++R D SKMDAYY+ P GK+ + ++ FL NPEY + + L
Sbjct: 70 IDRPNIPKPPPKTERLLIMRNDLSKMDAYYVLPNGKRAKGKPDIDRFLKENPEYAATLPL 129
Query: 143 SDFTFSVPKVMDDTI 157
S F FS PK++ +T+
Sbjct: 130 SSFNFSTPKIVKETV 144
>gi|162461941|ref|NP_001105176.1| uncharacterized protein LOC542070 [Zea mays]
gi|13936312|gb|AAK40309.1| putative methyl-binding domain protein MBD108 [Zea mays]
gi|194698040|gb|ACF83104.1| unknown [Zea mays]
gi|194706798|gb|ACF87483.1| unknown [Zea mays]
gi|414886083|tpg|DAA62097.1| TPA: hypothetical protein ZEAMMB73_724313 [Zea mays]
gi|414886084|tpg|DAA62098.1| TPA: hypothetical protein ZEAMMB73_724313 [Zea mays]
gi|414886085|tpg|DAA62099.1| TPA: hypothetical protein ZEAMMB73_724313 [Zea mays]
Length = 297
Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 95/150 (63%), Gaps = 12/150 (8%)
Query: 23 SIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR----KPGVSCEDPADIEYDA 78
SI + QC KCFKWR+I + E+YEEIR +I + PFVC R +P ++C DP DI D
Sbjct: 68 SIGAFTVQCAKCFKWRLIPTKEKYEEIRERIIQEPFVCKRAREWRPDITCNDPEDISQDG 127
Query: 79 SRVWVIDRPGIPKTPGGFKRSLVLRKDFSK--MDAYYITPTGKKLRTLNEVAGFLAANPE 136
SR+W ID+P I + P G++R + +R + D YY +PTG+KLR+L EV FL NPE
Sbjct: 128 SRLWAIDKPNIAQPPHGWERQIRIRGEGGTKFADVYYTSPTGRKLRSLVEVDRFLQENPE 187
Query: 137 Y--SDVSLSDFTFSVPKVMDDTIPEDVVKK 164
+ V+L+ F+F +P+ + +D VKK
Sbjct: 188 HVAQGVTLAQFSFQIPRPLR----QDYVKK 213
>gi|224087333|ref|XP_002308125.1| methyl binding domain protein [Populus trichocarpa]
gi|222854101|gb|EEE91648.1| methyl binding domain protein [Populus trichocarpa]
Length = 328
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 105/184 (57%), Gaps = 8/184 (4%)
Query: 5 QETLKTASKPRGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR-- 62
Q + S P + S+ T+ QC KCFKWR+I + ++YEE+R I E PF C+
Sbjct: 87 QRPFRRYSDPNVPSRVLPSVGTFTVQCAKCFKWRLIPTKKKYEELREHILEEPFFCETAR 146
Query: 63 --KPGVSCEDPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSK--MDAYYITPTG 118
+P +SC+DP DI D SR+W ID+P I + P G++R L +R + S D YY +P+G
Sbjct: 147 GWRPDISCDDPTDITQDGSRLWAIDKPNIAQPPPGWQRLLRIRGEGSSKFADVYYQSPSG 206
Query: 119 KKLRTLNEVAGFLAANPEYSD--VSLSDFTFSVPKVMDDTIPEDVVKKGSASSDAKRKPK 176
K+LR++ EV +L +PEY V+LS F+F +PK + + SAS D R +
Sbjct: 207 KRLRSMVEVQKYLIEHPEYMTYGVTLSQFSFQIPKPLQENYVRKRRPSISASCDYTRHLQ 266
Query: 177 TSKG 180
+G
Sbjct: 267 PGEG 270
>gi|357133777|ref|XP_003568500.1| PREDICTED: methyl-CpG-binding domain-containing protein 1-like
[Brachypodium distachyon]
Length = 184
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 105/173 (60%), Gaps = 5/173 (2%)
Query: 10 TASKPRGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCE 69
+A + RG E +I YA QC +C KWR + + EE+E +R + P+VC ++ SC+
Sbjct: 15 SAQRKRGSTE---TIGLYAVQCCECHKWRTVPTKEEFETLRENFTDDPWVCTKRLDCSCK 71
Query: 70 DPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAG 129
DP DIEYD+SR+WVID+P IPK P R V+R D SK+D YY+ P GK+ R +V
Sbjct: 72 DPGDIEYDSSRIWVIDKPNIPKPPPKTDRLAVMRGDLSKLDIYYVMPNGKRARCTGDVQK 131
Query: 130 FLAANPEYSD-VSLSDFTFSVPKVMDDTIPEDVV-KKGSASSDAKRKPKTSKG 180
FL ANP+Y D +S+ F+F+ PK++++T+ K G A K +SK
Sbjct: 132 FLDANPDYKDRISVESFSFATPKIVEETVSHSSAWKAGKAKKQDKTNASSSKN 184
>gi|218198840|gb|EEC81267.1| hypothetical protein OsI_24363 [Oryza sativa Indica Group]
Length = 334
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 101/166 (60%), Gaps = 13/166 (7%)
Query: 13 KPRGGGEPIR-SIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR----KPGVS 67
KPR G + SI Y QC CFKWR+I + E+YEEIR I + FVC+R +S
Sbjct: 83 KPRHGYNTVLPSIGAYTVQCTHCFKWRIIPTKEKYEEIRENICQDVFVCERAREWNRVIS 142
Query: 68 CEDPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLRKD-FSKM-DAYYITPTGKKLRTLN 125
C DP DI D SRVW ID+ I +TP G+ R + +R + SK D YY +PTGKKLR+L
Sbjct: 143 CVDPEDISQDGSRVWAIDKASISQTPPGWDREVRIRGEGCSKFADVYYTSPTGKKLRSLV 202
Query: 126 EVAGFLAANPEY--SDVSLSDFTFSVPKVMDDTIPEDVVKKGSASS 169
EV +LA NP Y V+L+ F+F++PK + ED V+K + ++
Sbjct: 203 EVGRYLAENPHYIRQGVNLTQFSFAIPKPLQ----EDYVRKHTYAA 244
>gi|28973626|gb|AAO64137.1| unknown protein [Arabidopsis thaliana]
Length = 257
Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 99/172 (57%), Gaps = 12/172 (6%)
Query: 4 KQETLKTASKPRGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR- 62
++E L S+P SI + QC CFKWR++ S ++YEEIR ++ E PF CD
Sbjct: 36 EEEVLPVQSQPLSSRTQCPSIGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTA 95
Query: 63 ---KPGVSCEDPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSK--MDAYYITPT 117
KP +SC+ PADI D +R+W ID+P I + P G++R L +R + D YY+ P+
Sbjct: 96 REWKPDISCDVPADIYQDGTRLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPS 155
Query: 118 GKKLRTLNEVAGFLAANPEY--SDVSLSDFTFSVPKVMDDTIPEDVVKKGSA 167
GKKLR+ EV +L N EY V LS F+F +PK + D D V+K A
Sbjct: 156 GKKLRSTVEVQKYLNDNSEYIGEGVKLSQFSFQIPKPLQD----DYVRKRPA 203
>gi|15238478|ref|NP_198383.1| methyl-CPG-binding domain protein 02 [Arabidopsis thaliana]
gi|42573507|ref|NP_974850.1| methyl-CPG-binding domain protein 02 [Arabidopsis thaliana]
gi|334188017|ref|NP_001190421.1| methyl-CPG-binding domain protein 02 [Arabidopsis thaliana]
gi|75154716|sp|Q8LA53.1|MBD2_ARATH RecName: Full=Methyl-CpG-binding domain-containing protein 2;
Short=AtMBD2; Short=MBD02; AltName:
Full=Methyl-CpG-binding protein MBD2
gi|21593605|gb|AAM65572.1| unknown [Arabidopsis thaliana]
gi|107738396|gb|ABF83690.1| At5g35330 [Arabidopsis thaliana]
gi|332006569|gb|AED93952.1| methyl-CPG-binding domain protein 02 [Arabidopsis thaliana]
gi|332006570|gb|AED93953.1| methyl-CPG-binding domain protein 02 [Arabidopsis thaliana]
gi|332006571|gb|AED93954.1| methyl-CPG-binding domain protein 02 [Arabidopsis thaliana]
Length = 272
Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 99/172 (57%), Gaps = 12/172 (6%)
Query: 4 KQETLKTASKPRGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR- 62
++E L S+P SI + QC CFKWR++ S ++YEEIR ++ E PF CD
Sbjct: 36 EEEVLPVQSQPLSSRTQCPSIGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTA 95
Query: 63 ---KPGVSCEDPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSK--MDAYYITPT 117
KP +SC+ PADI D +R+W ID+P I + P G++R L +R + D YY+ P+
Sbjct: 96 REWKPDISCDVPADIYQDGTRLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPS 155
Query: 118 GKKLRTLNEVAGFLAANPEY--SDVSLSDFTFSVPKVMDDTIPEDVVKKGSA 167
GKKLR+ EV +L N EY V LS F+F +PK + D D V+K A
Sbjct: 156 GKKLRSTVEVQKYLNDNSEYIGEGVKLSQFSFQIPKPLQD----DYVRKRPA 203
>gi|10178093|dbj|BAB11480.1| unnamed protein product [Arabidopsis thaliana]
Length = 270
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 99/172 (57%), Gaps = 12/172 (6%)
Query: 4 KQETLKTASKPRGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR- 62
++E L S+P SI + QC CFKWR++ S ++YEEIR ++ E PF CD
Sbjct: 34 EEEVLPVQSQPLSSRTQCPSIGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTA 93
Query: 63 ---KPGVSCEDPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSK--MDAYYITPT 117
KP +SC+ PADI D +R+W ID+P I + P G++R L +R + D YY+ P+
Sbjct: 94 REWKPDISCDVPADIYQDGTRLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPS 153
Query: 118 GKKLRTLNEVAGFLAANPEY--SDVSLSDFTFSVPKVMDDTIPEDVVKKGSA 167
GKKLR+ EV +L N EY V LS F+F +PK + D D V+K A
Sbjct: 154 GKKLRSTVEVQKYLNDNSEYIGEGVKLSQFSFQIPKPLQD----DYVRKRPA 201
>gi|110736706|dbj|BAF00316.1| hypothetical protein [Arabidopsis thaliana]
Length = 252
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 99/172 (57%), Gaps = 12/172 (6%)
Query: 4 KQETLKTASKPRGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR- 62
++E L S+P SI + QC CFKWR++ S ++YEEIR ++ E PF CD
Sbjct: 36 EEEVLPVQSQPLSSRTQCPSIGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTA 95
Query: 63 ---KPGVSCEDPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSK--MDAYYITPT 117
KP +SC+ PADI D +R+W ID+P I + P G++R L +R + D YY+ P+
Sbjct: 96 REWKPDISCDVPADIYQDGTRLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPS 155
Query: 118 GKKLRTLNEVAGFLAANPEY--SDVSLSDFTFSVPKVMDDTIPEDVVKKGSA 167
GKKLR+ EV +L N EY V LS F+F +PK + D D V+K A
Sbjct: 156 GKKLRSTVEVQKYLNDNSEYIGEGVKLSQFSFQIPKPLQD----DYVRKRPA 203
>gi|297606456|ref|NP_001058488.2| Os06g0702100 [Oryza sativa Japonica Group]
gi|255677371|dbj|BAF20402.2| Os06g0702100 [Oryza sativa Japonica Group]
Length = 373
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 100/166 (60%), Gaps = 13/166 (7%)
Query: 13 KPRGGGEPIR-SIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR----KPGVS 67
KPR G + SI Y QC CFKWR+I + E+YEEIR I + FVC+R +S
Sbjct: 108 KPRHGYNTVLPSIGAYTVQCAHCFKWRIIPTKEKYEEIRENICQDVFVCERAREWNRVIS 167
Query: 68 CEDPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLRKD-FSKM-DAYYITPTGKKLRTLN 125
C DP DI D SRVW ID+ I +TP G+ R + +R + SK D YY +PTGKKLR+L
Sbjct: 168 CVDPEDISQDGSRVWAIDKASISQTPPGWDREVRIRGEGCSKFADVYYTSPTGKKLRSLV 227
Query: 126 EVAGFLAANPEY--SDVSLSDFTFSVPKVMDDTIPEDVVKKGSASS 169
EV +LA NP Y V+L+ F+F+ PK + ED V+K + ++
Sbjct: 228 EVGRYLAENPHYIRQGVNLTQFSFATPKPLQ----EDYVRKHTYAA 269
>gi|125598409|gb|EAZ38189.1| hypothetical protein OsJ_22540 [Oryza sativa Japonica Group]
Length = 359
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 100/166 (60%), Gaps = 13/166 (7%)
Query: 13 KPRGGGEPIR-SIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR----KPGVS 67
KPR G + SI Y QC CFKWR+I + E+YEEIR I + FVC+R +S
Sbjct: 94 KPRHGYNTVLPSIGAYTVQCAHCFKWRIIPTKEKYEEIRENICQDVFVCERAREWNRVIS 153
Query: 68 CEDPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLRKD-FSKM-DAYYITPTGKKLRTLN 125
C DP DI D SRVW ID+ I +TP G+ R + +R + SK D YY +PTGKKLR+L
Sbjct: 154 CVDPEDISQDGSRVWAIDKASISQTPPGWDREVRIRGEGCSKFADVYYTSPTGKKLRSLV 213
Query: 126 EVAGFLAANPEY--SDVSLSDFTFSVPKVMDDTIPEDVVKKGSASS 169
EV +LA NP Y V+L+ F+F+ PK + ED V+K + ++
Sbjct: 214 EVGRYLAENPHYIRQGVNLTQFSFATPKPLQ----EDYVRKHTYAA 255
>gi|115479913|ref|NP_001063550.1| Os09g0494300 [Oryza sativa Japonica Group]
gi|113631783|dbj|BAF25464.1| Os09g0494300 [Oryza sativa Japonica Group]
gi|215715253|dbj|BAG95004.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 315
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 100/164 (60%), Gaps = 15/164 (9%)
Query: 9 KTASKPRGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR----KP 64
K+A+ P G + SI + QC KCFKWR+I + E+YEEIR I + PF C+R +P
Sbjct: 64 KSANNPNRG---MPSIGAFTVQCAKCFKWRLIPTKEKYEEIRECIIQEPFECERAREWRP 120
Query: 65 GVSCEDPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSK--MDAYYITPTGKKLR 122
V+C DP DI D SR+W ID+P I P G++R + +R + D YY +PTG+KLR
Sbjct: 121 DVTCNDPEDISQDGSRLWAIDKPNIALPPPGWERQIRIRGEGGTKFADVYYTSPTGRKLR 180
Query: 123 TLNEVAGFLAANPEY--SDVSLSDFTFSVPKVMDDTIPEDVVKK 164
+L E+ +L NP+Y V+L+ F+F +P+ + +D VKK
Sbjct: 181 SLVEIDRYLLENPDYVAQGVTLTQFSFQIPRPLR----QDYVKK 220
>gi|125564222|gb|EAZ09602.1| hypothetical protein OsI_31886 [Oryza sativa Indica Group]
Length = 383
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 100/164 (60%), Gaps = 15/164 (9%)
Query: 9 KTASKPRGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR----KP 64
K+A+ P G + SI + QC KCFKWR+I + E+YEEIR I + PF C+R +P
Sbjct: 132 KSANNPNRG---MPSIGAFTVQCAKCFKWRLIPTKEKYEEIRECIIQEPFECERAREWRP 188
Query: 65 GVSCEDPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSK--MDAYYITPTGKKLR 122
V+C DP DI D SR+W ID+P I P G++R + +R + D YY +PTG+KLR
Sbjct: 189 DVTCNDPEDISQDGSRLWAIDKPNIALPPPGWERQIRIRGEGGTKFADVYYTSPTGRKLR 248
Query: 123 TLNEVAGFLAANPEY--SDVSLSDFTFSVPKVMDDTIPEDVVKK 164
+L E+ +L NP+Y V+L+ F+F +P+ + +D VKK
Sbjct: 249 SLVEIDRYLLENPDYVAQGVTLTQFSFQIPRPLR----QDYVKK 288
>gi|297805084|ref|XP_002870426.1| hypothetical protein ARALYDRAFT_915661 [Arabidopsis lyrata subsp.
lyrata]
gi|297316262|gb|EFH46685.1| hypothetical protein ARALYDRAFT_915661 [Arabidopsis lyrata subsp.
lyrata]
Length = 278
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 93/153 (60%), Gaps = 12/153 (7%)
Query: 23 SIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR----KPGVSCEDPADIEYDA 78
SI + QC CFKWR++ S ++YEEIR ++ E PF C+ KP +SC+ PADI D
Sbjct: 61 SIGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCETAREWKPDISCDVPADIYQDG 120
Query: 79 SRVWVIDRPGIPKTPGGFKRSLVLRKDFSK--MDAYYITPTGKKLRTLNEVAGFLAANPE 136
+RVW ID+P I + P G++R L +R + D YY+ P+GKKLR+ EV +L NPE
Sbjct: 121 TRVWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEVQKYLNDNPE 180
Query: 137 YSD--VSLSDFTFSVPKVMDDTIPEDVVKKGSA 167
Y V LS F+F +PK + D D V+K A
Sbjct: 181 YMSEGVKLSQFSFQIPKPLQD----DYVRKRPA 209
>gi|215741526|dbj|BAG98021.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 245
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 100/164 (60%), Gaps = 15/164 (9%)
Query: 9 KTASKPRGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR----KP 64
K+A+ P G + SI + QC KCFKWR+I + E+YEEIR I + PF C+R +P
Sbjct: 64 KSANNPNRG---MPSIGAFTVQCAKCFKWRLIPTKEKYEEIRECIIQEPFECERAREWRP 120
Query: 65 GVSCEDPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSK--MDAYYITPTGKKLR 122
V+C DP DI D SR+W ID+P I P G++R + +R + D YY +PTG+KLR
Sbjct: 121 DVTCNDPEDISQDGSRLWAIDKPNIALPPPGWERQIRIRGEGGTKFADVYYTSPTGRKLR 180
Query: 123 TLNEVAGFLAANPEY--SDVSLSDFTFSVPKVMDDTIPEDVVKK 164
+L E+ +L NP+Y V+L+ F+F +P+ + +D VKK
Sbjct: 181 SLVEIDRYLLENPDYVAQGVTLTQFSFQIPRPLR----QDYVKK 220
>gi|449465348|ref|XP_004150390.1| PREDICTED: methyl-CpG-binding domain-containing protein 2-like
[Cucumis sativus]
Length = 342
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 98/159 (61%), Gaps = 12/159 (7%)
Query: 21 IRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR----KPGVSCEDPADIEY 76
+ S+ + QC CFKWR+I + E+YEEIR + E PF C+ +P +SC+DPADI
Sbjct: 103 LPSVGAFTVQCAGCFKWRLIPTKEKYEEIREHLLEKPFYCETARGWRPDISCDDPADITQ 162
Query: 77 DASRVWVIDRPGIPKTPGGFKRSLVLRKDFSK--MDAYYITPTGKKLRTLNEVAGFLAAN 134
D SR+W ID+P I + P G++R L +R + S D YY P+GKKLR++ ++ +L +
Sbjct: 163 DGSRLWAIDKPNIAQPPPGWQRLLHIRGEGSTKFADVYYTAPSGKKLRSMVDIQKYLIEH 222
Query: 135 PEYSD--VSLSDFTFSVPKVMDDTIPEDVVKKGSASSDA 171
PEY VS++ F+F +PK + ED V+K + +A
Sbjct: 223 PEYQTEGVSMTRFSFQIPKPLR----EDYVRKRRPNMNA 257
>gi|449508228|ref|XP_004163256.1| PREDICTED: methyl-CpG-binding domain-containing protein 2-like,
partial [Cucumis sativus]
Length = 268
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 98/159 (61%), Gaps = 12/159 (7%)
Query: 21 IRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR----KPGVSCEDPADIEY 76
+ S+ + QC CFKWR+I + E+YEEIR + E PF C+ +P +SC+DPADI
Sbjct: 103 LPSVGAFTVQCAGCFKWRLIPTKEKYEEIREHLLEKPFYCETARGWRPDISCDDPADITQ 162
Query: 77 DASRVWVIDRPGIPKTPGGFKRSLVLRKDFSK--MDAYYITPTGKKLRTLNEVAGFLAAN 134
D SR+W ID+P I + P G++R L +R + S D YY P+GKKLR++ ++ +L +
Sbjct: 163 DGSRLWAIDKPNIAQPPPGWQRLLHIRGEGSTKFADVYYTAPSGKKLRSMVDIQKYLIEH 222
Query: 135 PEYSD--VSLSDFTFSVPKVMDDTIPEDVVKKGSASSDA 171
PEY VS++ F+F +PK + ED V+K + +A
Sbjct: 223 PEYQTEGVSMTRFSFQIPKPLR----EDYVRKRRPNMNA 257
>gi|134285526|gb|ABO69708.1| MBD2 [Triticum aestivum]
Length = 313
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 94/160 (58%), Gaps = 8/160 (5%)
Query: 24 IDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR----KPGVSCEDPADIEYDAS 79
I + QC +CFKWR+I + E+YEEIR I + PF C+R KP V+C+D DI D S
Sbjct: 77 IGAFTIQCARCFKWRLIPTKEKYEEIREHIIQEPFDCERAREWKPDVTCDDQEDISQDGS 136
Query: 80 RVWVIDRPGIPKTPGGFKRSLVLRKDFSK--MDAYYITPTGKKLRTLNEVAGFLAANPEY 137
R+W ID+P I + P G++R + +R D YY +PT +KLR+L EV +L NPEY
Sbjct: 137 RLWAIDKPNIAQPPAGWERQIRIRGGGGTKFADVYYTSPTSRKLRSLVEVDRYLQENPEY 196
Query: 138 --SDVSLSDFTFSVPKVMDDTIPEDVVKKGSASSDAKRKP 175
V+L+ F+F +P+ + + K S S +A KP
Sbjct: 197 GAQGVTLAQFSFQIPRPLRQNYVKKRPKNASPSDEATTKP 236
>gi|357159152|ref|XP_003578356.1| PREDICTED: methyl-CpG-binding domain-containing protein 2-like
[Brachypodium distachyon]
Length = 316
Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 92/149 (61%), Gaps = 8/149 (5%)
Query: 24 IDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR----KPGVSCEDPADIEYDAS 79
I + QC KCFKWR++ + E+YEEIR I + PF C+R KP V+C+DP DI D S
Sbjct: 78 IGAFTIQCAKCFKWRLVPTKEKYEEIREHIIQEPFECERAREWKPDVTCDDPEDISQDGS 137
Query: 80 RVWVIDRPGIPKTPGGFKRSLVLRKDFSK--MDAYYITPTGKKLRTLNEVAGFLAANPEY 137
R+W ID+P I + P G++R + +R + D YY +P+G+KLR+ EV +L NPEY
Sbjct: 138 RLWAIDKPNIARAPNGWERQIRIRGEGGTKFADVYYTSPSGRKLRSQVEVDKYLKENPEY 197
Query: 138 SD--VSLSDFTFSVPKVMDDTIPEDVVKK 164
+ V + F+F +P+ + + + V K+
Sbjct: 198 GEKGVKSTQFSFQIPRPLRENYVKHVKKR 226
>gi|357123643|ref|XP_003563518.1| PREDICTED: methyl-CpG-binding domain-containing protein 2-like
[Brachypodium distachyon]
Length = 375
Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 95/162 (58%), Gaps = 12/162 (7%)
Query: 16 GGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR----KPGVSCEDP 71
G + SI Y QC CFKWR++ + E+YEE+R I E FVC R +SC DP
Sbjct: 83 GHASILPSIGAYTVQCADCFKWRIVPTKEKYEELRETICEELFVCARACEWNRVLSCNDP 142
Query: 72 ADIEYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSK--MDAYYITPTGKKLRTLNEVAG 129
D+ D SRVW ID+P I + P G+ R + +R + S D YY +P+GKKLR+L E+
Sbjct: 143 EDMSQDGSRVWAIDKPSIAQPPPGWDRDVRIRGEGSSKFADVYYTSPSGKKLRSLVEIGR 202
Query: 130 FLAANPEY--SDVSLSDFTFSVPKVMDDTIPEDVVKKGSASS 169
+LA NP Y SLS F+F++PK + ED VKK + ++
Sbjct: 203 YLAENPHYIQQGASLSQFSFAIPKPLQ----EDYVKKRTHAA 240
>gi|242094104|ref|XP_002437542.1| hypothetical protein SORBIDRAFT_10g029100 [Sorghum bicolor]
gi|241915765|gb|EER88909.1| hypothetical protein SORBIDRAFT_10g029100 [Sorghum bicolor]
Length = 348
Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 101/166 (60%), Gaps = 12/166 (7%)
Query: 9 KTASKPRGG-GEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR----K 63
+++ KPR G G + SI TY QC KC+KWR++ + E+Y+E+R I++ FVC R
Sbjct: 80 QSSKKPRRGYGTVLPSIGTYTVQCAKCYKWRIVPTKEKYQELRGSISQELFVCARAREWN 139
Query: 64 PGVSCEDPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSKM-DAYYITPTGKKLR 122
+SC + DI D SR+W IDRP I + P G+ R + LR +K D YY +P+GKKLR
Sbjct: 140 RELSCVELEDISQDGSRMWAIDRPNIVQPPPGWDREVRLRGASTKFADVYYTSPSGKKLR 199
Query: 123 TLNEVAGFLAANPEY--SDVSLSDFTFSVPKVMDDTIPEDVVKKGS 166
+L E+ +L NP Y V+LS F+F+ PK + ED V+K +
Sbjct: 200 SLVEIGRYLEQNPHYIREGVNLSQFSFATPKPLQ----EDYVQKHT 241
>gi|224118772|ref|XP_002331442.1| methyl binding domain protein [Populus trichocarpa]
gi|222873656|gb|EEF10787.1| methyl binding domain protein [Populus trichocarpa]
Length = 343
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 104/175 (59%), Gaps = 20/175 (11%)
Query: 21 IRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR----KPGVSCEDPADIEY 76
+ S+ + QC KCFKWR+I + ++YEE+R I E PF C+ +P +SC+DP DI+
Sbjct: 104 LPSVGAFTVQCAKCFKWRLIPTKQKYEELREHILEEPFFCETAREWRPDISCDDPTDIDQ 163
Query: 77 DASRVWVIDRPGIPKTPGGFKRSLVLRKDFSK--MDAYYITPTGKKLRTLNEVAGFLAAN 134
D SR+W ID+P I + P G++R L +R + S D YY P+GK+LR++ E+ +L +
Sbjct: 164 DGSRLWAIDKPNIAQPPPGWQRLLRIRGEGSTKFADVYYQAPSGKRLRSMVEIQKYLIEH 223
Query: 135 PEY--SDVSLSDFTFSVPKVMDDTIPEDVVKKGSASSDAKRKPKTSKGVVGDGTA 187
PEY ++L+ F+F +PK + E+ V+ K++P+ S + G A
Sbjct: 224 PEYMRDGITLTQFSFQIPKPLQ----ENYVR--------KKRPRLSASCLEPGEA 266
>gi|242082197|ref|XP_002445867.1| hypothetical protein SORBIDRAFT_07g027130 [Sorghum bicolor]
gi|241942217|gb|EES15362.1| hypothetical protein SORBIDRAFT_07g027130 [Sorghum bicolor]
Length = 306
Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 105/169 (62%), Gaps = 12/169 (7%)
Query: 22 RSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR----KPGVSCEDPADIEYD 77
+ I T+ +QC KC KWR++++ E+YEEIR + E PFVC++ KP V+C+DP+D+ D
Sbjct: 88 KQIGTFVSQCAKCQKWRLVSTKEKYEEIREQALEDPFVCEKAREWKPDVTCDDPSDVSED 147
Query: 78 ASRVWVIDRPGIPKTPGGFKRSLVLRKDFSK--MDAYYITPTGKKLRTLNEVAGFLAANP 135
+ +W ID+P IP+TP ++R + +R + S D YY +PTG +LR+ ++ +L +P
Sbjct: 148 SGMLWAIDKPNIPRTPQEWERLIKIRGEGSTKFADVYYWSPTGTQLRSRKKLEKYLGEHP 207
Query: 136 EYS--DVSLSDFTFSVPKVMDDTIPEDVVKKGSASSDAKRKPKTSKGVV 182
EY+ + LS F+F P + +D V+K S +S + PK S ++
Sbjct: 208 EYAAQGLKLSHFSFKSPAPLQ----KDYVRKRSQTSQSGVTPKRSTKLL 252
>gi|414589852|tpg|DAA40423.1| TPA: hypothetical protein ZEAMMB73_683932 [Zea mays]
Length = 289
Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 95/150 (63%), Gaps = 12/150 (8%)
Query: 23 SIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR----KPGVSCEDPADIEYDA 78
SI + QC KCFKWR+I + E+YEEIR +I E PFVC R +P V+C DP DI D
Sbjct: 72 SIGAFTVQCAKCFKWRLIPTKEKYEEIRERIIEEPFVCKRAREWRPDVTCNDPEDISQDG 131
Query: 79 SRVWVIDRPGIPKTPGGFKRSLVLRKDFSK--MDAYYITPTGKKLRTLNEVAGFLAANPE 136
SR+W ID+P I + P G++R + +R + D YY +PTG+KLR+L EV FL NPE
Sbjct: 132 SRLWAIDKPNIAQPPRGWERQIRIRGEGGTKFADVYYTSPTGRKLRSLVEVDRFLQENPE 191
Query: 137 Y--SDVSLSDFTFSVPKVMDDTIPEDVVKK 164
Y V+L+ F+F +P+ + +D VKK
Sbjct: 192 YGAQGVTLAQFSFQIPRPLR----QDYVKK 217
>gi|162462094|ref|NP_001105177.1| uncharacterized protein LOC542071 [Zea mays]
gi|13936314|gb|AAK40310.1| putative methyl-binding domain protein MBD111 [Zea mays]
gi|195635441|gb|ACG37189.1| methyl-binding domain protein MBD111 [Zea mays]
gi|223974361|gb|ACN31368.1| unknown [Zea mays]
gi|223974963|gb|ACN31669.1| unknown [Zea mays]
gi|414589848|tpg|DAA40419.1| TPA: hypothetical protein ZEAMMB73_683932 [Zea mays]
gi|414589849|tpg|DAA40420.1| TPA: hypothetical protein ZEAMMB73_683932 [Zea mays]
gi|414589850|tpg|DAA40421.1| TPA: hypothetical protein ZEAMMB73_683932 [Zea mays]
gi|414589851|tpg|DAA40422.1| TPA: hypothetical protein ZEAMMB73_683932 [Zea mays]
Length = 301
Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 95/150 (63%), Gaps = 12/150 (8%)
Query: 23 SIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR----KPGVSCEDPADIEYDA 78
SI + QC KCFKWR+I + E+YEEIR +I E PFVC R +P V+C DP DI D
Sbjct: 72 SIGAFTVQCAKCFKWRLIPTKEKYEEIRERIIEEPFVCKRAREWRPDVTCNDPEDISQDG 131
Query: 79 SRVWVIDRPGIPKTPGGFKRSLVLRKDFSK--MDAYYITPTGKKLRTLNEVAGFLAANPE 136
SR+W ID+P I + P G++R + +R + D YY +PTG+KLR+L EV FL NPE
Sbjct: 132 SRLWAIDKPNIAQPPRGWERQIRIRGEGGTKFADVYYTSPTGRKLRSLVEVDRFLQENPE 191
Query: 137 Y--SDVSLSDFTFSVPKVMDDTIPEDVVKK 164
Y V+L+ F+F +P+ + +D VKK
Sbjct: 192 YGAQGVTLAQFSFQIPRPLR----QDYVKK 217
>gi|326488565|dbj|BAJ93951.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326498931|dbj|BAK02451.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 272
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/136 (46%), Positives = 82/136 (60%), Gaps = 7/136 (5%)
Query: 23 SIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR----KPGVSCEDPADIEYDA 78
+IDTYA +C C KWR+I S +YE+IR I +PF C KP V+C DP DI
Sbjct: 75 TIDTYAVECSTCQKWRIIPSKLKYEQIRENIIHVPFSCKYVHGWKPEVTCHDPTDISEGN 134
Query: 79 SRVWVIDRPGIPKTPGGFKRSLVLRKDFSK--MDAYYITPTGKKLRTLNEVAGFLAANPE 136
VW ID+P IP+TP G++R + LR + D YYI P G+KLR++ EV NP+
Sbjct: 135 GMVWAIDKPAIPQTPPGWERKITLRSEQGTRFADVYYICPAGRKLRSMKEVERCFEDNPD 194
Query: 137 YSDV-SLSDFTFSVPK 151
Y+ V LS F+F VPK
Sbjct: 195 YAAVLQLSQFSFKVPK 210
>gi|242082195|ref|XP_002445866.1| hypothetical protein SORBIDRAFT_07g027120 [Sorghum bicolor]
gi|241942216|gb|EES15361.1| hypothetical protein SORBIDRAFT_07g027120 [Sorghum bicolor]
Length = 298
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 102/169 (60%), Gaps = 12/169 (7%)
Query: 22 RSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR----KPGVSCEDPADIEYD 77
+ I +AAQC KC KWR+I++ E+YEEIR + E PFVC++ KP V+C+DP+D+ D
Sbjct: 80 KQIGAFAAQCAKCQKWRLISTKEKYEEIREQALEDPFVCEKACEWKPDVTCDDPSDVSQD 139
Query: 78 ASRVWVIDRPGIPKTPGGFKRSLVLRKDFSK--MDAYYITPTGKKLRTLNEVAGFLAANP 135
+W ID+P IP+TP ++R + +R + S D YY +PTG +LR+ EV +L +P
Sbjct: 140 NGMLWAIDKPNIPRTPQEWERLVKIRGEGSTKFADVYYWSPTGTQLRSSKEVEKYLEEHP 199
Query: 136 EYS--DVSLSDFTFSVPKVMDDTIPEDVVKKGSASSDAKRKPKTSKGVV 182
E + V LS F+F P + +D V+K S +S + P S ++
Sbjct: 200 ECAAQGVKLSHFSFQSPAPLQ----KDYVRKRSQTSQSVVTPTRSTMLL 244
>gi|86438778|emb|CAJ75638.1| putative methyl-binding domain (MBD108) protein [Brachypodium
sylvaticum]
Length = 171
Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 61/133 (45%), Positives = 86/133 (64%), Gaps = 7/133 (5%)
Query: 24 IDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR----KPGVSCEDPADIEYDAS 79
IDTY+AQC KC KWR+I + +YEEIR K+ PF C+ KPGV+C+DP D D
Sbjct: 33 IDTYSAQCNKCRKWRIIPTKRKYEEIREKLRSGPFSCEHASEWKPGVTCDDPTDASQDDG 92
Query: 80 RVWVIDRPGIPKTPGGFKRSLVLRKDFSK--MDAYYITPTGKKLRTLNEVAGFLAANPEY 137
+ W ID+PGI +TP G+ R++ +R + S D YYITPTGK LR+ +V +L NP+
Sbjct: 93 KFWAIDKPGIAQTPLGWDRTISIRSEGSTRFADVYYITPTGKNLRSKVDVGRYLKENPQC 152
Query: 138 SDVSLSDFTFSVP 150
+ ++ F+F+ P
Sbjct: 153 A-AAIEQFSFAKP 164
>gi|302819820|ref|XP_002991579.1| hypothetical protein SELMODRAFT_429893 [Selaginella moellendorffii]
gi|300140612|gb|EFJ07333.1| hypothetical protein SELMODRAFT_429893 [Selaginella moellendorffii]
Length = 335
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 87/140 (62%), Gaps = 7/140 (5%)
Query: 24 IDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCD----RKPGVSCEDPADIEYDAS 79
+ Y QC +C +WR++ S E YE IR ++ E P+VC+ +P C+ DI+ +
Sbjct: 49 VQAYTVQCSRCGQWRLVPSEEVYESIRARVLENPWVCEDARIWRPDACCDIKGDIQQEGD 108
Query: 80 -RVWVIDRPGIPKTPGGFKRSLVLRKDFSKM--DAYYITPTGKKLRTLNEVAGFLAANPE 136
R+W +D+P +PKTP G+KR V+R + D YYI+P GKKLR++ EVA FL +PE
Sbjct: 109 DRLWALDKPNLPKTPAGWKRDFVIRSEGCSRFGDIYYISPCGKKLRSMVEVAKFLEDHPE 168
Query: 137 YSDVSLSDFTFSVPKVMDDT 156
Y D+S+ F +++P+ D +
Sbjct: 169 YYDLSVDQFCYTIPQPADKS 188
Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 90 PKTPGGFKRSLVLRKDFSK--MDAYYITPTGKKLRTLNEVAGFLAANPEY--SDVSLSDF 145
P P G+ R ++LR S D YY++P ++R+L ++ FL NP Y V L F
Sbjct: 243 PPVPRGWIREIILRGSGSSRLCDVYYLSPCQARIRSLPDMNEFLHQNPSYLHHGVRLEQF 302
Query: 146 TFSVP 150
F P
Sbjct: 303 DFGAP 307
>gi|357141750|ref|XP_003572334.1| PREDICTED: uncharacterized protein LOC100823889 [Brachypodium
distachyon]
Length = 357
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 85/133 (63%), Gaps = 7/133 (5%)
Query: 24 IDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR----KPGVSCEDPADIEYDAS 79
IDTY+AQC KC KWR+I + +YEEIR K+ PF C+ +PGV+C+DP D D
Sbjct: 195 IDTYSAQCNKCQKWRIIPTKRKYEEIREKLRSGPFSCEHASEWRPGVTCDDPTDASQDDG 254
Query: 80 RVWVIDRPGIPKTPGGFKRSLVLRKDFSK--MDAYYITPTGKKLRTLNEVAGFLAANPEY 137
+ W ID+PGI +TP G+ R++ +R + S D YY TPTGK LR+ +V +L NP+
Sbjct: 255 KFWAIDKPGIARTPLGWDRTISIRSEGSTRFADVYYTTPTGKVLRSKVDVGRYLKENPQC 314
Query: 138 SDVSLSDFTFSVP 150
+ ++ F+F+ P
Sbjct: 315 A-AAIEQFSFATP 326
>gi|168056347|ref|XP_001780182.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668415|gb|EDQ55023.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 417
Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 106/200 (53%), Gaps = 20/200 (10%)
Query: 4 KQETLKTAS-KPRGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVC-- 60
K E L+T PR +++ YA QC CFKWR+I + E+YE +R I E PF+C
Sbjct: 52 KDEALETGQDAPRWASS---AVEIYAIQCNACFKWRIIPTKEKYEALREHILEQPFICVQ 108
Query: 61 --DRKPGVSCEDPADIEYDASRV-WVIDRPGIPKTPGGFKRSLVLRKDFSK--MDAYYIT 115
+ + +C+DPADI+ D V W ID+ IP+ P GF R +VLR + +K D YY T
Sbjct: 109 AQEWRENSNCDDPADIDNDEPTVLWAIDKHDIPRPPEGFSRRVVLRAENAKKFADVYYST 168
Query: 116 PTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSVPKVMDDTIPEDVVKKGSASSDAKRKP 175
P GK LR+L +V +L +PE+ ++ F+F+ PK D A KR
Sbjct: 169 PCGKTLRSLPQVQKYLDEHPEHG-AQITQFSFTSPKGRADA--------SGAGVSTKRSS 219
Query: 176 KTSKGVVGDGTARDEGSVAM 195
K + + R +GSVAM
Sbjct: 220 YDGKQLNTEPRKRMKGSVAM 239
>gi|302779886|ref|XP_002971718.1| hypothetical protein SELMODRAFT_38000 [Selaginella moellendorffii]
gi|300160850|gb|EFJ27467.1| hypothetical protein SELMODRAFT_38000 [Selaginella moellendorffii]
Length = 141
Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 86/138 (62%), Gaps = 7/138 (5%)
Query: 24 IDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCD----RKPGVSCEDPADIEYDAS 79
+ Y QC +C +WR++ S E YE IR ++ E P+VC+ +P C+ DI+ +
Sbjct: 1 VQAYTVQCSRCGQWRLVPSEEVYESIRARVLENPWVCEDAKIWRPDACCDIKGDIQQEGD 60
Query: 80 -RVWVIDRPGIPKTPGGFKRSLVLRKDFSKM--DAYYITPTGKKLRTLNEVAGFLAANPE 136
R+W +D+P +PKTP G+KR V+R + D YYI+P GKKLR++ EVA FL +PE
Sbjct: 61 DRLWALDKPNLPKTPAGWKRDFVIRSEGCSRFGDIYYISPCGKKLRSMVEVAKFLEDHPE 120
Query: 137 YSDVSLSDFTFSVPKVMD 154
Y D+S+ F +++P+ D
Sbjct: 121 YYDLSVDQFCYTIPQPAD 138
>gi|53792746|dbj|BAD53782.1| methyl-binding domain protein-like [Oryza sativa Japonica Group]
Length = 399
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 99/206 (48%), Gaps = 53/206 (25%)
Query: 13 KPRGGGEPIR-SIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR----KPGVS 67
KPR G + SI Y QC CFKWR+I + E+YEEIR I + FVC+R +S
Sbjct: 94 KPRHGYNTVLPSIGAYTVQCAHCFKWRIIPTKEKYEEIRENICQDVFVCERAREWNRVIS 153
Query: 68 CEDPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLRKD---------------------- 105
C DP DI D SRVW ID+ I +TP G+ R + +R +
Sbjct: 154 CVDPEDISQDGSRVWAIDKASISQTPPGWDREVRIRGEGCSKFADVYVTVSFPGFAVVRD 213
Query: 106 -----FSKMD---------------AYYITPTGKKLRTLNEVAGFLAANPEY--SDVSLS 143
F + YY +PTGKKLR+L EV +LA NP Y V+L+
Sbjct: 214 IWYHIFGRFHIRISNFFLYVPNSIFMYYTSPTGKKLRSLVEVGRYLAENPHYIRQGVNLT 273
Query: 144 DFTFSVPKVMDDTIPEDVVKKGSASS 169
F+F+ PK + ED V+K + ++
Sbjct: 274 QFSFATPKPLQ----EDYVRKHTYAA 295
>gi|297832688|ref|XP_002884226.1| hypothetical protein ARALYDRAFT_900454 [Arabidopsis lyrata subsp.
lyrata]
gi|297330066|gb|EFH60485.1| hypothetical protein ARALYDRAFT_900454 [Arabidopsis lyrata subsp.
lyrata]
Length = 139
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 80/135 (59%), Gaps = 10/135 (7%)
Query: 24 IDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCEDPADIE--YDASRV 81
ID+YAAQC KC K R + S E+YE+IR + F C SCE+P D++ +D+ V
Sbjct: 5 IDSYAAQCWKCLKVRYVESQEKYEDIRSETPNKSFECR-----SCEEPGDVDMNFDSPAV 59
Query: 82 -WVIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYIT--PTGKKLRTLNEVAGFLAANPEYS 138
W DR GIPKTP G KR LV+R+ K D YY T P K+L+ +V F+ N ++
Sbjct: 60 RWFQDRHGIPKTPQGLKRILVVRRSGEKADVYYQTEAPKRKRLKCFKDVTKFIEDNEQFK 119
Query: 139 DVSLSDFTFSVPKVM 153
D+ + + +F+ PK M
Sbjct: 120 DMKIEEVSFAAPKRM 134
>gi|18411327|ref|NP_567177.1| methyl-CPG-binding domain 3 protein [Arabidopsis thaliana]
gi|75339279|sp|Q4PSK1.1|MBD3_ARATH RecName: Full=Methyl-CpG-binding domain-containing protein 3;
Short=AtMBD3; Short=MBD03; AltName:
Full=Methyl-CpG-binding protein MBD3
gi|67633718|gb|AAY78783.1| methyl-CpG-binding domain-containing protein [Arabidopsis thaliana]
gi|332656474|gb|AEE81874.1| methyl-CPG-binding domain 3 protein [Arabidopsis thaliana]
Length = 163
Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 78/130 (60%), Gaps = 10/130 (7%)
Query: 24 IDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCEDPAD--IEYDASRV 81
ID+YAAQC KC K R I S E+YEEIR K E F C R CE+P D + +D+ +
Sbjct: 9 IDSYAAQCWKCLKVRSIESQEDYEEIRSKTLEKFFECKR-----CEEPGDMVMNFDSLTM 63
Query: 82 -WVIDRPGIPKTPGGFKRSLVLRKDFSKMDAYY--ITPTGKKLRTLNEVAGFLAANPEYS 138
W D IPKTP G KR LV+R + K+D YY + P K+ +++ EVA F+ E+
Sbjct: 64 RWFQDEHSIPKTPQGLKRVLVVRTNCVKVDVYYESLAPRRKRFKSIKEVATFIEDKEEFK 123
Query: 139 DVSLSDFTFS 148
D++L + +F+
Sbjct: 124 DMTLEEVSFA 133
>gi|3047090|gb|AAC13602.1| T26D22.18 gene product [Arabidopsis thaliana]
Length = 151
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 63/104 (60%), Gaps = 4/104 (3%)
Query: 4 KQETLKTASKPRGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR- 62
++E L S+P SI + QC CFKWR++ S ++YEEIR ++ E PF CD
Sbjct: 34 EEEVLPVQSQPLSSRTQCPSIGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTA 93
Query: 63 ---KPGVSCEDPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLR 103
KP +SC+ PADI D +R+W ID+P I + P G++R L +R
Sbjct: 94 REWKPDISCDVPADIYQDGTRLWAIDKPNISRPPAGWQRLLRIR 137
>gi|357502293|ref|XP_003621435.1| hypothetical protein MTR_7g013320 [Medicago truncatula]
gi|355496450|gb|AES77653.1| hypothetical protein MTR_7g013320 [Medicago truncatula]
Length = 123
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/76 (60%), Positives = 54/76 (71%), Gaps = 10/76 (13%)
Query: 83 VIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSL 142
VID+P I KTP GFKR+LVLR D+SK+D+YYITPTG+KLR NE +G VS
Sbjct: 58 VIDKPNISKTPQGFKRTLVLRNDYSKLDSYYITPTGEKLRARNEPSG----------VSA 107
Query: 143 SDFTFSVPKVMDDTIP 158
SDF FS K+M DTIP
Sbjct: 108 SDFDFSSQKIMQDTIP 123
>gi|222641845|gb|EEE69977.1| hypothetical protein OsJ_29872 [Oryza sativa Japonica Group]
Length = 533
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 61/99 (61%), Gaps = 7/99 (7%)
Query: 9 KTASKPRGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR----KP 64
K+A+ P G + SI + QC KCFKWR+I + E+YEEIR I + PF C+R +P
Sbjct: 430 KSANNPNRG---MPSIGAFTVQCAKCFKWRLIPTKEKYEEIRECIIQEPFECERAREWRP 486
Query: 65 GVSCEDPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLR 103
V+C DP DI D SR+W ID+P I G++R + +R
Sbjct: 487 DVTCNDPEDISQDGSRLWAIDKPNIALPTPGWERQIRIR 525
>gi|297805086|ref|XP_002870427.1| methyl-CpG-binding domain 12 [Arabidopsis lyrata subsp. lyrata]
gi|297316263|gb|EFH46686.1| methyl-CpG-binding domain 12 [Arabidopsis lyrata subsp. lyrata]
Length = 155
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 77/143 (53%), Gaps = 17/143 (11%)
Query: 29 AQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR----KPGVSCEDPADIEYDASRVWVI 84
QC C KWR+I S + Y+ I+ + PFVC+R P +SC P D W
Sbjct: 2 VQCADCKKWRLIPSMQHYKTIKETQLQTPFVCERACAWTPNMSCNVPQDGT--TCDTWS- 58
Query: 85 DRPGIPKTPGGFKRSLVLRKDFSKM-DAYYITPTGKKLRTLNEVAGFLAANPEY--SDVS 141
IP P G+ RS+ +R D +K D YY P+G++LR+ +V FL +PEY + V+
Sbjct: 59 ---NIPPIPTGWSRSVYIRSDSTKFADVYYFPPSGERLRSSADVRSFLDNHPEYVRAGVN 115
Query: 142 LSDFTFSVPKVMDDTIPEDVVKK 164
S F+F +PK +D E+ VKK
Sbjct: 116 PSQFSFQLPKPLD----ENYVKK 134
>gi|42573509|ref|NP_974851.1| methyl-CPG-binding domain 12 protein [Arabidopsis thaliana]
gi|75173466|sp|Q9FZP6.1|MBD12_ARATH RecName: Full=Putative methyl-CpG-binding domain protein 12;
Short=AtMBD12; Short=MBD12; AltName:
Full=Methyl-CpG-binding protein MBD12
gi|10178095|dbj|BAB11482.1| unnamed protein product [Arabidopsis thaliana]
gi|332006572|gb|AED93955.1| methyl-CPG-binding domain 12 protein [Arabidopsis thaliana]
Length = 155
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 70/135 (51%), Gaps = 13/135 (9%)
Query: 29 AQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR----KPGVSCEDPADIEYDASRVWVI 84
QC C KWR+I S + Y I+ + PFVC P +SC P D W
Sbjct: 2 VQCTDCKKWRLIPSMQHYNIIKETQLQTPFVCGTTSGWTPNMSCNVPQD--GTTCDTW-- 57
Query: 85 DRPGIPKTPGGFKRSLVLRKDFSKM-DAYYITPTGKKLRTLNEVAGFLAANPEY--SDVS 141
P IP P G+ RS+ +R + +K D YY P+G++LR+ EV FL +PEY V+
Sbjct: 58 --PSIPPIPTGWSRSVHIRSESTKFADVYYFPPSGERLRSSAEVQSFLDNHPEYVREGVN 115
Query: 142 LSDFTFSVPKVMDDT 156
S F+F +PK +DD
Sbjct: 116 RSQFSFQIPKPLDDN 130
>gi|357141925|ref|XP_003572396.1| PREDICTED: uncharacterized protein LOC100846314 [Brachypodium
distachyon]
Length = 371
Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 65/112 (58%), Gaps = 7/112 (6%)
Query: 45 EYEEIRCKIAEIPFVCDR----KPGVSCEDPADIEYDASRVWVIDRPGIPKTPGGFKRSL 100
+YEEIR K+ PF C+ KPGV+C+DP D D + W ID+ GIP+TP + R++
Sbjct: 200 KYEEIREKLPSGPFSCEHASEWKPGVTCDDPTDASLDDGKFWAIDKQGIPQTPLEWDRTI 259
Query: 101 VLRKD--FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSVP 150
+R + D YY TPTG LR+ +V +L NP+ D + F+F+ P
Sbjct: 260 SIRSEGCIRFADVYYFTPTGLMLRSKLDVGRYLDENPQ-CDAVIEQFSFATP 310
>gi|134285530|gb|ABO69710.1| MBD4 [Triticum aestivum]
Length = 99
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 54/77 (70%), Gaps = 1/77 (1%)
Query: 84 IDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEY-SDVSL 142
+D+PGIP+ P KR +++R+D SKMD YY+ P GK+ R+ N+V FL NPEY +++
Sbjct: 1 MDKPGIPRPPPATKRLVIMRRDLSKMDTYYLLPNGKRARSGNDVEKFLQENPEYRANLPA 60
Query: 143 SDFTFSVPKVMDDTIPE 159
S F+F+ PK++ TI E
Sbjct: 61 SKFSFATPKIVPATIGE 77
>gi|134285532|gb|ABO69711.1| MBD5 [Triticum aestivum]
Length = 90
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 84 IDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYS-DVSL 142
+D+ GIP P +R +++R+D SKMD YY+ P GK++R+ +V FL NPEY ++
Sbjct: 1 MDKAGIPCPPPVTERLVIMRRDLSKMDTYYLLPNGKRVRSGGDVEKFLQENPEYRVNLPA 60
Query: 143 SDFTFSVPKVMDDTIPEDVVKK 164
S F+F++PK + T+ E +++
Sbjct: 61 SKFSFAMPKTVPATVVESSLRR 82
>gi|388522195|gb|AFK49159.1| unknown [Lotus japonicus]
Length = 219
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 44/68 (64%), Gaps = 5/68 (7%)
Query: 12 SKP-RGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR----KPGV 66
SKP R + + S+ + AQC CFKWR+I + E+YEEIR I E PFVC R +P V
Sbjct: 111 SKPSRSVPKVLPSVGAFTAQCASCFKWRLIPTKEKYEEIREHILEQPFVCQRALEWRPDV 170
Query: 67 SCEDPADI 74
SC+DP DI
Sbjct: 171 SCDDPEDI 178
>gi|303275850|ref|XP_003057219.1| methyl binding domain protein [Micromonas pusilla CCMP1545]
gi|226461571|gb|EEH58864.1| methyl binding domain protein [Micromonas pusilla CCMP1545]
Length = 293
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 14/123 (11%)
Query: 30 QCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCEDPADIEYDASRVWVIDRPGI 89
QC+ C KWR + ++ C P R+PG+ C P D G+
Sbjct: 83 QCDSCQKWRYAPETCVTDKWTCDQMADP----RRPGIDCASPEDAPPHVG-------AGV 131
Query: 90 PKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAA---NPEYSDVSLSDFT 146
P P G++R ++ R+ DAYY +P GK++R+ +V FL A +Y DV + F
Sbjct: 132 PAPPEGWRREVIPRRSTLGADAYYYSPCGKRMRSKPDVQRFLDACRKEGKYEDVCIDAFD 191
Query: 147 FSV 149
F
Sbjct: 192 FGT 194
>gi|255637085|gb|ACU18874.1| unknown [Glycine max]
Length = 139
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 21 IRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR 62
+ S+ + QC CFKWR+I + E+YEEIR I E PFVC +
Sbjct: 95 LPSVGAFTVQCASCFKWRLIPTKEKYEEIREHILEQPFVCQK 136
>gi|255088019|ref|XP_002505932.1| methyl binding domain protein [Micromonas sp. RCC299]
gi|226521203|gb|ACO67190.1| methyl binding domain protein [Micromonas sp. RCC299]
Length = 232
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 93 PGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFL-AANPE--YSDVSLSDFTFSV 149
P G++R ++ RK DAYY +P GK++R+ +V FL PE Y+DV++ F FS
Sbjct: 80 PEGWRREVIPRKSVQGADAYYYSPCGKRMRSKPDVQRFLDKKRPEGKYTDVTIDQFDFST 139
>gi|125606191|gb|EAZ45227.1| hypothetical protein OsJ_29871 [Oryza sativa Japonica Group]
Length = 169
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 6/55 (10%)
Query: 112 YYITPTGKKLRTLNEVAGFLAANPEY--SDVSLSDFTFSVPKVMDDTIPEDVVKK 164
YY +PTG+KLR+L E+ +L NP+Y V+L+ F+F +P+ + +D VKK
Sbjct: 24 YYTSPTGRKLRSLVEIDRYLLENPDYVAQGVTLTQFSFQIPRPLR----QDYVKK 74
>gi|339235729|ref|XP_003379419.1| putative methyl-CpG binding domain protein [Trichinella spiralis]
gi|316977925|gb|EFV60964.1| putative methyl-CpG binding domain protein [Trichinella spiralis]
Length = 164
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 15/67 (22%)
Query: 96 FKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSVPKVMDD 155
+KR LVLR K DAYYI P GKK R++ EV + NP MDD
Sbjct: 92 WKRELVLRTAKDKADAYYIAPDGKKFRSIPEVTEYALLNPP---------------AMDD 136
Query: 156 TIPEDVV 162
PE+ +
Sbjct: 137 LQPENFI 143
>gi|357498449|ref|XP_003619513.1| hypothetical protein MTR_6g055760 [Medicago truncatula]
gi|355494528|gb|AES75731.1| hypothetical protein MTR_6g055760 [Medicago truncatula]
Length = 80
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 25/31 (80%)
Query: 101 VLRKDFSKMDAYYITPTGKKLRTLNEVAGFL 131
VL KD+SK+D+ YITP GK LRT NE+A +L
Sbjct: 40 VLIKDYSKLDSNYITPIGKNLRTRNEIATYL 70
>gi|294932688|ref|XP_002780392.1| hypothetical protein Pmar_PMAR016587 [Perkinsus marinus ATCC 50983]
gi|239890325|gb|EER12187.1| hypothetical protein Pmar_PMAR016587 [Perkinsus marinus ATCC 50983]
Length = 1848
Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 22/86 (25%)
Query: 30 QCEKCFKWRVINSS-EEYEEIRCKIAEIPFVCDRKPGVSCEDPADIEYDASRVWVIDRPG 88
QC+ C +WR+I++ + +E R +I FVC PG SCEDP D W++D G
Sbjct: 383 QCDCCRRWRMISAELAKAKEGRDQI----FVCSELPGKSCEDPCD--------WIMDTQG 430
Query: 89 ------IPKTPGGFKRSLVLRKDFSK 108
P PGG S +L + SK
Sbjct: 431 RVMAGESPSPPGG---STLLPRHSSK 453
>gi|7710145|ref|NP_056647.1| methyl-CpG-binding domain protein 2 testis-specific isoform [Homo
sapiens]
gi|5929755|gb|AAD56596.1| testis-specific methyl-CpG binding protein 2 [Homo sapiens]
gi|119583402|gb|EAW62998.1| methyl-CpG binding domain protein 2, isoform CRA_b [Homo sapiens]
gi|119583403|gb|EAW62999.1| methyl-CpG binding domain protein 2, isoform CRA_b [Homo sapiens]
Length = 302
Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 90 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+K+ V+RK K D YY +P+GKK R+ ++A +L + V LS F
Sbjct: 153 PALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLG-----NTVDLSSFD 207
Query: 147 FSVPKVMDDTI 157
F K+M +
Sbjct: 208 FRTGKMMPSKL 218
>gi|410052700|ref|XP_512139.4| PREDICTED: methyl-CpG-binding domain protein 2 isoform 3 [Pan
troglodytes]
Length = 487
Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 90 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+K+ V+RK K D YY +P+GKK R+ ++A +L + V LS F
Sbjct: 229 PALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLG-----NTVDLSSFD 283
Query: 147 FSVPKVMDDTIPED 160
F K+M + ++
Sbjct: 284 FRTGKMMPSKLQKN 297
>gi|113205660|ref|NP_001037916.1| methyl-CpG binding domain protein 4 [Xenopus (Silurana) tropicalis]
gi|89272695|emb|CAJ81414.1| methyl-CpG binding domain protein 4 [Xenopus (Silurana) tropicalis]
Length = 472
Score = 42.7 bits (99), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 89 IPKTPGGFKRSLVLR---KDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDF 145
I P G+KR + R K K D Y+++P G LR+ +A +L N E ++ L DF
Sbjct: 49 IRSLPHGWKRIVKQRQSGKTSGKYDVYFVSPQGTTLRSRISLAKYLNNNKEI-NLKLEDF 107
Query: 146 TFSVP 150
FSVP
Sbjct: 108 DFSVP 112
>gi|307190527|gb|EFN74524.1| F-box/LRR-repeat protein 7 [Camponotus floridanus]
Length = 1280
Score = 42.7 bits (99), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 9/58 (15%)
Query: 95 GFKRSLVLR----KDFSKM-DAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTF 147
G+KR LV R F KM D YY TP GKK+R+ EVA L++ ++++ +FTF
Sbjct: 269 GWKRELVFRASNDSSFKKMADIYYYTPKGKKVRSFREVAESLSS----KELTIDNFTF 322
>gi|126320765|ref|XP_001362190.1| PREDICTED: methyl-CpG-binding domain protein 2-like [Monodelphis
domestica]
Length = 416
Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 90 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+K+ V+RK K D YY +P+GKK R+ ++A +L + V LS F
Sbjct: 158 PALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLG-----NTVDLSSFD 212
Query: 147 FSVPKVM 153
F K+M
Sbjct: 213 FRTGKMM 219
>gi|296222685|ref|XP_002757298.1| PREDICTED: methyl-CpG-binding domain protein 2, partial [Callithrix
jacchus]
Length = 299
Score = 42.7 bits (99), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 90 PKTPGGFKRSLVLRK---DFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+K+ V+RK K D YY +P+GKK R+ ++A +L + V LS F
Sbjct: 41 PALPPGWKKEEVIRKFGLSVGKSDVYYFSPSGKKFRSKPQLARYLG-----NTVDLSSFD 95
Query: 147 FSVPKVM 153
F K+M
Sbjct: 96 FRTGKMM 102
>gi|402903150|ref|XP_003914441.1| PREDICTED: methyl-CpG-binding domain protein 2 [Papio anubis]
Length = 412
Score = 42.7 bits (99), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 90 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+K+ V+RK K D YY +P+GKK R+ ++A +L + V LS F
Sbjct: 154 PALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLG-----NTVDLSSFD 208
Query: 147 FSVPKVM 153
F K+M
Sbjct: 209 FRTGKMM 215
>gi|109122247|ref|XP_001082249.1| PREDICTED: methyl-CpG-binding domain protein 2 [Macaca mulatta]
Length = 412
Score = 42.7 bits (99), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 90 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+K+ V+RK K D YY +P+GKK R+ ++A +L + V LS F
Sbjct: 154 PALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLG-----NTVDLSSFD 208
Query: 147 FSVPKVM 153
F K+M
Sbjct: 209 FRTGKMM 215
>gi|426386009|ref|XP_004059488.1| PREDICTED: methyl-CpG-binding domain protein 2 [Gorilla gorilla
gorilla]
Length = 411
Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 90 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+K+ V+RK K D YY +P+GKK R+ ++A +L + V LS F
Sbjct: 153 PALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLG-----NTVDLSSFD 207
Query: 147 FSVPKVM 153
F K+M
Sbjct: 208 FRTGKMM 214
>gi|383862804|ref|XP_003706873.1| PREDICTED: uncharacterized protein LOC100881143 [Megachile
rotundata]
Length = 1172
Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 9/58 (15%)
Query: 95 GFKRSLVLRK----DFSKM-DAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTF 147
G+KR LV R + +M D YY TP GKK+R+ EVA FL ++++ +FTF
Sbjct: 236 GWKRELVFRASSDPNLKRMADIYYYTPKGKKVRSFREVAEFLNT----KELTIDNFTF 289
>gi|4505117|ref|NP_003918.1| methyl-CpG-binding domain protein 2 isoform 1 [Homo sapiens]
gi|50401198|sp|Q9UBB5.1|MBD2_HUMAN RecName: Full=Methyl-CpG-binding domain protein 2; AltName:
Full=Demethylase; Short=DMTase; AltName:
Full=Methyl-CpG-binding protein MBD2
gi|3800793|gb|AAC68871.1| methyl-CpG binding protein MBD2 [Homo sapiens]
gi|5929756|gb|AAD56597.1| methyl-CpG binding protein 2 [Homo sapiens]
gi|21595776|gb|AAH32638.1| Methyl-CpG binding domain protein 2 [Homo sapiens]
gi|119583401|gb|EAW62997.1| methyl-CpG binding domain protein 2, isoform CRA_a [Homo sapiens]
Length = 411
Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 90 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+K+ V+RK K D YY +P+GKK R+ ++A +L + V LS F
Sbjct: 153 PALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLG-----NTVDLSSFD 207
Query: 147 FSVPKVM 153
F K+M
Sbjct: 208 FRTGKMM 214
>gi|395830852|ref|XP_003788528.1| PREDICTED: methyl-CpG-binding domain protein 2 [Otolemur garnettii]
Length = 405
Score = 42.7 bits (99), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 90 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+K+ V+RK K D YY +P+GKK R+ ++A +L + V LS F
Sbjct: 147 PALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLG-----NTVDLSSFD 201
Query: 147 FSVPKVMDDTI 157
F K+M +
Sbjct: 202 FRTGKMMPSKL 212
>gi|348576643|ref|XP_003474096.1| PREDICTED: LOW QUALITY PROTEIN: methyl-CpG-binding domain protein
1-like [Cavia porcellus]
Length = 633
Score = 42.4 bits (98), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 95 GFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDF-----T 146
G+KR V RK + D YY +PTG ++R+ E+ +L + D+SL DF
Sbjct: 14 GWKRREVYRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPS---CDLSLFDFKQGILC 70
Query: 147 FSVPKVMDDTIPEDVVKKGSASSDAKRK 174
+S PK +P KK S + A+++
Sbjct: 71 YSSPKARSVPVPSKKRKKASKPAKAQKR 98
>gi|149064587|gb|EDM14790.1| rCG46680, isoform CRA_a [Rattus norvegicus]
Length = 278
Score = 42.4 bits (98), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 90 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+K+ V+RK K D YY +P+GKK R+ ++A +L + V LS F
Sbjct: 189 PALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLG-----NAVDLSSFD 243
Query: 147 FSVPKVMDDTI 157
F K+M +
Sbjct: 244 FRTGKMMPSKL 254
>gi|344269858|ref|XP_003406764.1| PREDICTED: methyl-CpG-binding domain protein 2-like [Loxodonta
africana]
Length = 348
Score = 42.4 bits (98), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 90 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+K+ V+RK K D YY +P+GKK R+ ++A +L + V LS F
Sbjct: 90 PALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLG-----NTVDLSSFD 144
Query: 147 FSVPKVM 153
F K+M
Sbjct: 145 FRTGKMM 151
>gi|3800795|gb|AAC68872.1| methyl-CpG binding protein MBD2 [Mus musculus]
gi|5739188|gb|AAD50372.1| methyl-CpG binding protein 2 [Mus musculus]
gi|37572285|gb|AAH46607.2| Methyl-CpG binding domain protein 2 [Mus musculus]
gi|148677619|gb|EDL09566.1| methyl-CpG binding domain protein 2, isoform CRA_b [Mus musculus]
Length = 414
Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 90 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+K+ V+RK K D YY +P+GKK R+ ++A +L + V LS F
Sbjct: 156 PALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLG-----NAVDLSSFD 210
Query: 147 FSVPKVM 153
F K+M
Sbjct: 211 FRTGKMM 217
>gi|218931229|ref|NP_034903.2| methyl-CpG-binding domain protein 2 [Mus musculus]
gi|341940941|sp|Q9Z2E1.2|MBD2_MOUSE RecName: Full=Methyl-CpG-binding domain protein 2; AltName:
Full=Methyl-CpG-binding protein MBD2
Length = 414
Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 90 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+K+ V+RK K D YY +P+GKK R+ ++A +L + V LS F
Sbjct: 156 PALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLG-----NAVDLSSFD 210
Query: 147 FSVPKVM 153
F K+M
Sbjct: 211 FRTGKMM 217
>gi|169234846|ref|NP_001108497.1| methyl-CpG-binding domain protein 2 [Rattus norvegicus]
gi|165970773|gb|AAI58878.1| Mbd2 protein [Rattus norvegicus]
Length = 412
Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 90 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+K+ V+RK K D YY +P+GKK R+ ++A +L + V LS F
Sbjct: 154 PALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLG-----NAVDLSSFD 208
Query: 147 FSVPKVM 153
F K+M
Sbjct: 209 FRTGKMM 215
>gi|397514153|ref|XP_003827361.1| PREDICTED: methyl-CpG-binding domain protein 2 [Pan paniscus]
Length = 376
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 90 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+K+ V+RK K D YY +P+GKK R+ ++A +L + V LS F
Sbjct: 118 PALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLG-----NTVDLSSFD 172
Query: 147 FSVPKVM 153
F K+M
Sbjct: 173 FRTGKMM 179
>gi|3800799|gb|AAC68874.1| testis specific methyl-CpG binding protein MBD2 [Mus musculus]
gi|5739189|gb|AAD50373.1| testis-specific methyl-CpG binding protein 2 [Mus musculus]
gi|148677618|gb|EDL09565.1| methyl-CpG binding domain protein 2, isoform CRA_a [Mus musculus]
Length = 249
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 90 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+K+ V+RK K D YY +P+GKK R+ ++A +L + V LS F
Sbjct: 156 PALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLG-----NAVDLSSFD 210
Query: 147 FSVPKVMDDTI 157
F K+M +
Sbjct: 211 FRTGKMMPSKL 221
>gi|335279477|ref|XP_003121489.2| PREDICTED: methyl-CpG-binding domain protein 1 [Sus scrofa]
Length = 536
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 12/105 (11%)
Query: 95 GFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDF-----T 146
G+KR V RK + D YY +PTG ++R+ E+ +L D+SL DF
Sbjct: 14 GWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGP---ACDLSLFDFKQGILC 70
Query: 147 FSVPKVMDDTIPEDVVKKGSASSDA-KRKPKTSKGVVGDGTARDE 190
+ PK +P KK S + A KR+ K V T RDE
Sbjct: 71 YPAPKAHSLAVPSRKRKKPSKPAKARKRQVGPQKSEVRKETPRDE 115
>gi|149064588|gb|EDM14791.1| rCG46680, isoform CRA_b [Rattus norvegicus]
Length = 447
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 90 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+K+ V+RK K D YY +P+GKK R+ ++A +L + V LS F
Sbjct: 189 PALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLG-----NAVDLSSFD 243
Query: 147 FSVPKVM 153
F K+M
Sbjct: 244 FRTGKMM 250
>gi|380798437|gb|AFE71094.1| methyl-CpG-binding domain protein 2 isoform 1, partial [Macaca
mulatta]
Length = 276
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 90 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+K+ V+RK K D YY +P+GKK R+ ++A +L + V LS F
Sbjct: 18 PALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLG-----NTVDLSSFD 72
Query: 147 FSVPKVM 153
F K+M
Sbjct: 73 FRTGKMM 79
>gi|403268200|ref|XP_003926168.1| PREDICTED: methyl-CpG-binding domain protein 2, partial [Saimiri
boliviensis boliviensis]
Length = 283
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 90 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+K+ V+RK K D YY +P+GKK R+ ++A +L + V LS F
Sbjct: 25 PALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLG-----NTVDLSSFD 79
Query: 147 FSVPKVM 153
F K+M
Sbjct: 80 FRTGKMM 86
>gi|291394391|ref|XP_002713528.1| PREDICTED: methyl-CpG binding domain protein 2 [Oryctolagus
cuniculus]
Length = 310
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 90 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+K+ V+RK K D YY +P+GKK R+ ++A +L + V LS F
Sbjct: 52 PALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLG-----NTVDLSSFD 106
Query: 147 FSVPKVM 153
F K+M
Sbjct: 107 FRTGKMM 113
>gi|281351227|gb|EFB26811.1| hypothetical protein PANDA_002637 [Ailuropoda melanoleuca]
Length = 287
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 90 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+K+ V+RK K D YY +P+GKK R+ ++A +L + V LS F
Sbjct: 28 PALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLG-----NTVDLSSFD 82
Query: 147 FSVPKVM 153
F K+M
Sbjct: 83 FRTGKMM 89
>gi|115644418|ref|XP_792656.2| PREDICTED: methyl-CpG-binding domain protein 2-like
[Strongylocentrotus purpuratus]
gi|192759055|gb|ACF05485.1| methyl-CpG-binding domain type 2/3 [Hemicentrotus pulcherrimus]
Length = 274
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 84 IDRPGI---PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEY 137
ID G+ P P G+KR V+RK K D YY +P GKKLR+ ++A F+
Sbjct: 16 IDTKGLQDCPGLPAGWKREEVIRKSGLSAGKTDVYYYSPCGKKLRSKPQLARFIG----- 70
Query: 138 SDVSLSDFTFSVPKVM 153
+ LS F F K++
Sbjct: 71 DAIDLSAFDFRTGKLL 86
>gi|431896183|gb|ELK05599.1| Methyl-CpG-binding domain protein 2 [Pteropus alecto]
Length = 262
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 90 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+K+ V+RK K D YY +P+GKK R+ ++A +L + V LS F
Sbjct: 4 PALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLG-----NTVDLSSFD 58
Query: 147 FSVPKVM 153
F K+M
Sbjct: 59 FRTGKMM 65
>gi|380015244|ref|XP_003691617.1| PREDICTED: uncharacterized protein LOC100870097 [Apis florea]
Length = 1199
Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 14/99 (14%)
Query: 95 GFKRSLVLR----KDFSKM-DAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSV 149
G+KR LV R + +M D YY TP GKK+R+ EVA FL ++++ +FTF
Sbjct: 256 GWKRELVFRASTDTNLKRMADIYYYTPKGKKVRSFREVAEFLNTK----ELTIDNFTFFK 311
Query: 150 PKVMDDTIPEDVVK-----KGSASSDAKRKPKTSKGVVG 183
+ D +++++ +GS + +R KG G
Sbjct: 312 EPIGLDDPEKEIIRDAKRIRGSGVTPPRRGLGYKKGTPG 350
>gi|194214687|ref|XP_001499825.2| PREDICTED: methyl-CpG-binding domain protein 2-like [Equus
caballus]
Length = 337
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 90 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+K+ V+RK K D YY +P+GKK R+ ++A +L + V LS F
Sbjct: 79 PALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLG-----NTVDLSSFD 133
Query: 147 FSVPKVM 153
F K+M
Sbjct: 134 FRTGKMM 140
>gi|301757743|ref|XP_002914722.1| PREDICTED: methyl-CpG-binding domain protein 2-like [Ailuropoda
melanoleuca]
Length = 330
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 90 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+K+ V+RK K D YY +P+GKK R+ ++A +L + V LS F
Sbjct: 71 PALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLG-----NTVDLSSFD 125
Query: 147 FSVPKVM 153
F K+M
Sbjct: 126 FRTGKMM 132
>gi|328782619|ref|XP_396062.3| PREDICTED: hypothetical protein LOC412607 [Apis mellifera]
Length = 1173
Score = 41.6 bits (96), Expect = 0.16, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 14/99 (14%)
Query: 95 GFKRSLVLR----KDFSKM-DAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSV 149
G+KR LV R +M D YY TP GKK+R+ EVA FL ++++ +FTF
Sbjct: 231 GWKRELVFRASTDSSLKRMADIYYYTPKGKKVRSFREVAEFLNTK----ELTIDNFTFFK 286
Query: 150 PKVMDDTIPEDVVK-----KGSASSDAKRKPKTSKGVVG 183
+ D +++++ +GS + +R KG G
Sbjct: 287 EPIGLDDPEKEIIRDAKRIRGSGVTPPRRGVGYKKGTPG 325
>gi|340381059|ref|XP_003389039.1| PREDICTED: methyl-CpG-binding domain protein 2-like [Amphimedon
queenslandica]
Length = 319
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 6/57 (10%)
Query: 93 PGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P G++R +V+RK+ K D YY +P GKK R+ ++A FL +++D++ DF+
Sbjct: 17 PSGWRREIVVRKNGMSAGKTDVYYYSPCGKKFRSKPQIARFLG---DHADLTCFDFS 70
>gi|339232878|ref|XP_003381556.1| putative methyl-CpG binding domain protein [Trichinella spiralis]
gi|316979627|gb|EFV62390.1| putative methyl-CpG binding domain protein [Trichinella spiralis]
Length = 201
Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 92 TPGGFKRSLVLRKDFSK---MDAYYITPTGKKLRTLNEVAGFLAANPE-YSDVSLSDFTF 147
T G+KR LVLR SK D YYI+P+G K R+ EV F NP+ + + +FTF
Sbjct: 91 TQEGWKRELVLRALPSKSTSADVYYISPSGIKFRSSKEVERFAIMNPQSMNGLGPENFTF 150
>gi|213982783|ref|NP_001135563.1| methyl CpG binding protein 2 (Rett syndrome) [Xenopus (Silurana)
tropicalis]
gi|195539664|gb|AAI68054.1| Unknown (protein for MGC:185616) [Xenopus (Silurana) tropicalis]
Length = 466
Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 45/107 (42%), Gaps = 20/107 (18%)
Query: 90 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSL--SD 144
P P G+ R L RK K D Y I P GK R+ E+ + + D SL +D
Sbjct: 99 PTLPEGWTRKLKQRKSGRSAGKFDVYLINPNGKAFRSKVELIAYFQ---KVGDTSLDPND 155
Query: 145 FTFSVPKVMDDTIPEDVVKKGSASSDAKRKPKTSKGVVGDGTARDEG 191
F F+V +GS S +++PK SK GT R G
Sbjct: 156 FDFTV------------TGRGSPSRREQKQPKKSKAPKSSGTGRGRG 190
>gi|170045735|ref|XP_001850453.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167868663|gb|EDS32046.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 992
Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 10/58 (17%)
Query: 95 GFKRSLVLRKDFS-----KMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTF 147
G+KR LV R K + YYITP GKKLRT N++ L + +++ +FTF
Sbjct: 156 GWKRELVYRAHMDGNSKDKGEVYYITPAGKKLRTRNDIVMAL-----HDGLTMDNFTF 208
>gi|148223675|ref|NP_001083787.1| methyl-CpG binding domain protein 2 [Xenopus laevis]
gi|24898897|dbj|BAC23079.1| methyl-CpG binding protein MBD2 [Xenopus laevis]
Length = 267
Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 90 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+K+ V+RK K D YY +P GKK R+ ++A +L + V L+ F
Sbjct: 9 PALPAGWKKEEVIRKSGLSAGKSDVYYYSPNGKKFRSKPQLARYLG-----NSVDLNSFD 63
Query: 147 FSVPKVM 153
F K+M
Sbjct: 64 FRTGKMM 70
>gi|350408186|ref|XP_003488331.1| PREDICTED: hypothetical protein LOC100740617 [Bombus impatiens]
Length = 1180
Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 9/58 (15%)
Query: 95 GFKRSLVLR----KDFSKM-DAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTF 147
G++R LV R +M D YY TP GKK+R+ EVA FL ++++ +FTF
Sbjct: 232 GWRRELVFRASNDSSLKRMADIYYYTPKGKKVRSFREVAEFLNT----KELTIDNFTF 285
>gi|291394371|ref|XP_002713578.1| PREDICTED: methyl-CpG binding domain protein 1 isoform 1
[Oryctolagus cuniculus]
Length = 606
Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 12/105 (11%)
Query: 95 GFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDF-----T 146
G+KR V RK + D YY +PTG ++R+ E+ +L D++L DF
Sbjct: 14 GWKRREVFRKSGATCGRSDIYYQSPTGDRIRSKVELTRYLGP---ACDLTLFDFKQGVLC 70
Query: 147 FSVPKVMDDTIPEDVVKKGSASSDA-KRKPKTSKGVVGDGTARDE 190
+ PK P KK S + A KR+ + KG V R+E
Sbjct: 71 YPAPKATSLPTPSKKRKKASKPAKARKREVRPQKGEVRKEVPREE 115
>gi|195999462|ref|XP_002109599.1| hypothetical protein TRIADDRAFT_53787 [Trichoplax adhaerens]
gi|190587723|gb|EDV27765.1| hypothetical protein TRIADDRAFT_53787 [Trichoplax adhaerens]
Length = 1866
Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 95 GFKRSLVLRKDFSKM--DAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSVPKV 152
G++R LR+ + D YY P GKKLR +V +L N SD++L +F+FS
Sbjct: 454 GWRRQTRLRRVGRNLRGDVYYFAPCGKKLRIYPDVTKYLRKNS-ISDLNLENFSFSTKLY 512
Query: 153 MDD 155
+ D
Sbjct: 513 IGD 515
>gi|291394373|ref|XP_002713579.1| PREDICTED: methyl-CpG binding domain protein 1 isoform 2
[Oryctolagus cuniculus]
Length = 557
Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 12/105 (11%)
Query: 95 GFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDF-----T 146
G+KR V RK + D YY +PTG ++R+ E+ +L D++L DF
Sbjct: 14 GWKRREVFRKSGATCGRSDIYYQSPTGDRIRSKVELTRYLGP---ACDLTLFDFKQGVLC 70
Query: 147 FSVPKVMDDTIPEDVVKKGSASSDA-KRKPKTSKGVVGDGTARDE 190
+ PK P KK S + A KR+ + KG V R+E
Sbjct: 71 YPAPKATSLPTPSKKRKKASKPAKARKREVRPQKGEVRKEVPREE 115
>gi|291394375|ref|XP_002713580.1| PREDICTED: methyl-CpG binding domain protein 1 isoform 3
[Oryctolagus cuniculus]
Length = 550
Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 12/105 (11%)
Query: 95 GFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDF-----T 146
G+KR V RK + D YY +PTG ++R+ E+ +L D++L DF
Sbjct: 14 GWKRREVFRKSGATCGRSDIYYQSPTGDRIRSKVELTRYLGPA---CDLTLFDFKQGVLC 70
Query: 147 FSVPKVMDDTIPEDVVKKGSASSDA-KRKPKTSKGVVGDGTARDE 190
+ PK P KK S + A KR+ + KG V R+E
Sbjct: 71 YPAPKATSLPTPSKKRKKASKPAKARKREVRPQKGEVRKEVPREE 115
>gi|270005259|gb|EFA01707.1| hypothetical protein TcasGA2_TC007283 [Tribolium castaneum]
Length = 1079
Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Query: 95 GFKRSLVLRKDFSKM-----DAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTF 147
G+KR LV R F D YY +PTGKK+R++ E+ L + E +++ +FTF
Sbjct: 210 GWKRELVYRATFDNPNKRNGDIYYYSPTGKKIRSMRELTEVLKGSKE---LTVDNFTF 264
>gi|91081211|ref|XP_975618.1| PREDICTED: similar to conserved hypothetical protein [Tribolium
castaneum]
Length = 1102
Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Query: 95 GFKRSLVLRKDFSKM-----DAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTF 147
G+KR LV R F D YY +PTGKK+R++ E+ L + E +++ +FTF
Sbjct: 233 GWKRELVYRATFDNPNKRNGDIYYYSPTGKKIRSMRELTEVLKGSKE---LTVDNFTF 287
>gi|116487716|gb|AAI26018.1| LOC779091 protein [Xenopus laevis]
Length = 612
Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 18/96 (18%)
Query: 95 GFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSVPK 151
G+KR + +RK +D YY +PTG+++R+ E+A +L ++ D+SL DF V
Sbjct: 53 GWKRRISVRKSGASCGHIDIYYRSPTGEQMRSKIELAKYLGSS---VDLSLFDFRNGV-- 107
Query: 152 VMDDTIPEDVVKKGSASSDAKRKPKTSKGVVGDGTA 187
+V KG S K+K K + DGT
Sbjct: 108 ---------IVDKGHCSP-KKKKGSQRKSLPADGTV 133
>gi|60097955|ref|NP_001012403.1| methyl-CpG-binding domain protein 2 [Gallus gallus]
gi|58450101|gb|AAW78400.1| methyl-CpG-binding domain protein 2 [Gallus gallus]
Length = 257
Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 90 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+K+ V+RK K D YY +P+GKK R+ ++A +L + V LS F
Sbjct: 10 PALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLG-----NAVDLSCFD 64
Query: 147 FSVPKVM 153
F K+M
Sbjct: 65 FRTGKMM 71
>gi|432950889|ref|XP_004084660.1| PREDICTED: methyl-CpG-binding domain protein 2-like [Oryzias
latipes]
Length = 261
Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 90 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+K+ V+RK K D YY +PTGKK R+ ++A +L + V L+ F
Sbjct: 10 PALPPGWKKEEVIRKSGLSAGKSDVYYYSPTGKKFRSKPQLARYLG-----NTVDLACFD 64
Query: 147 FSVPKVM 153
F K+M
Sbjct: 65 FRTGKMM 71
>gi|240976669|ref|XP_002402466.1| hypothetical protein IscW_ISCW000867 [Ixodes scapularis]
gi|215491187|gb|EEC00828.1| hypothetical protein IscW_ISCW000867 [Ixodes scapularis]
Length = 928
Score = 40.0 bits (92), Expect = 0.49, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 95 GFKRSLVLRKDFSK---MDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSVPK 151
GFKR LV R ++ D YY G K+R++ +V +L +PE ++L+ FS +
Sbjct: 16 GFKRELVHRATSNQKVAADVYYYDSAGLKMRSIPDVVTYLGKHPE---INLAAANFSFRR 72
Query: 152 VMDDTIPEDVVKKGSA 167
V P +VV++ A
Sbjct: 73 VTIHKPPHEVVRQAKA 88
>gi|427787647|gb|JAA59275.1| Putative methyl-cpg binding transcription regulator [Rhipicephalus
pulchellus]
Length = 251
Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 84 IDRPGIPKTPGGFKRSLVLRK---DFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDV 140
ID P +PK G++R V+R+ K+D YY +P GKK R+ ++A FL +
Sbjct: 7 IDCPALPK---GWRREEVIRRGGLSAGKVDVYYYSPGGKKFRSKPQLARFLG-----DAI 58
Query: 141 SLSDFTFSVPKV 152
LS F F K+
Sbjct: 59 DLSTFDFRTGKI 70
>gi|333360981|pdb|2KY8|A Chain A, Solution Structure And Dynamic Analysis Of Chicken Mbd2
Methyl Binding Domain Bound To A Target Methylated Dna
Sequence
Length = 72
Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 86 RPGIPKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSL 142
R P P G+K+ V+RK K D YY +P+GKK R+ ++A +L + V L
Sbjct: 7 RTDCPALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLG-----NAVDL 61
Query: 143 SDFTFSVPKVM 153
S F F K+M
Sbjct: 62 SCFDFRTGKMM 72
>gi|241616494|ref|XP_002407962.1| methyl-CpG binding transcription regulator, putative [Ixodes
scapularis]
gi|215502882|gb|EEC12376.1| methyl-CpG binding transcription regulator, putative [Ixodes
scapularis]
Length = 258
Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 90 PKTPGGFKRSLVLRK---DFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+KR V+R+ K+D YY +P GKK R+ ++A FL + LS F
Sbjct: 17 PALPKGWKREEVIRRTGLSAGKVDVYYYSPGGKKFRSKPQLARFLG-----DAIDLSTFD 71
Query: 147 FSVPKV 152
F K+
Sbjct: 72 FRTGKI 77
>gi|307195797|gb|EFN77611.1| F-box/LRR-repeat protein 7 [Harpegnathos saltator]
Length = 1314
Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 9/58 (15%)
Query: 95 GFKRSLVLRKD----FSKM-DAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTF 147
G+KR LV R +M D YY TP GKK+R+ EVA L + ++S+ +FTF
Sbjct: 307 GWKRELVFRASSDSALKRMADIYYYTPKGKKVRSFREVAESLHSK----ELSIENFTF 360
>gi|126323490|ref|XP_001363695.1| PREDICTED: methyl-CpG-binding domain protein 3-like [Monodelphis
domestica]
Length = 289
Score = 39.7 bits (91), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 93 PGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSV 149
P G+KR V RK K D YY +P+GKK R+ ++A +L S + LS F F
Sbjct: 12 PQGWKREEVTRKSGLSAGKSDVYYYSPSGKKFRSKPQLARYLG-----SSMDLSTFDFRT 66
Query: 150 PKVMDDTIPEDVVK-KGSASSDAKRKP 175
K++ + ++ + + S+ AK KP
Sbjct: 67 GKMLMSKMNKNRQRMRYDCSNQAKGKP 93
>gi|323450793|gb|EGB06672.1| hypothetical protein AURANDRAFT_65286 [Aureococcus anophagefferens]
Length = 1993
Score = 39.3 bits (90), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 95 GFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAANPE---YSDVSL--SDFTFSV 149
G+ R LV R+ K+DAYY P G +LR+ +V + NP+ DV L S F F+
Sbjct: 1001 GWYRELVPRRSGDKVDAYYYPPDGTQLRSRPDVRRYFEGNPDAVKVGDVVLDTSQFQFAY 1060
Query: 150 PK 151
K
Sbjct: 1061 SK 1062
>gi|58388685|ref|XP_316465.2| AGAP006428-PA [Anopheles gambiae str. PEST]
gi|55239197|gb|EAA11395.2| AGAP006428-PA [Anopheles gambiae str. PEST]
Length = 1117
Score = 39.3 bits (90), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 9/106 (8%)
Query: 52 KIAEIP-------FVCDRKPGVSCEDPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLR- 103
K++E+P + C + ++++ RV+ + P + P G+ + + R
Sbjct: 416 KLSELPEIPQNGEWCCHWMNDYPVGESSEVDLPGGRVYTVIVPDW-RMPEGWVKHIFQRI 474
Query: 104 KDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSV 149
+ KMD I+P+GK LR+ EV +LA E D + DF V
Sbjct: 475 TTYGKMDILLISPSGKVLRSRQEVKAYLAEIGEEYDPNRYDFGLHV 520
>gi|358418734|ref|XP_003584033.1| PREDICTED: methyl-CpG-binding domain protein 2 [Bos taurus]
Length = 149
Score = 39.3 bits (90), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 90 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+K V+RK K D YY +P+GKK R+ ++A +L + V LS F
Sbjct: 4 PALPPGWKIEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLG-----NTVDLSSFD 58
Query: 147 FSVPKVM 153
F K+M
Sbjct: 59 FRTGKMM 65
>gi|431896198|gb|ELK05614.1| Methyl-CpG-binding domain protein 1 [Pteropus alecto]
Length = 639
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 95 GFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDF-----T 146
G+KR V RK + D YY +PTG ++R+ E+ +L + D+SL DF
Sbjct: 14 GWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPS---CDLSLFDFKQGILC 70
Query: 147 FSVPKVMDDTIPEDVVKKGSASSDAKR 173
+ PK +P KK S A++
Sbjct: 71 YPAPKAHSLALPSRKRKKPSKPVKARK 97
>gi|89271297|emb|CAJ82703.1| l-CpG binding domain protein 1 [Xenopus (Silurana) tropicalis]
Length = 380
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 95 GFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSV 149
G+KR + +RK D YY +PTG+K+R+ E+A + A D++L DF V
Sbjct: 14 GWKRRIAVRKSGVSCGHTDTYYKSPTGEKIRSRIELAKYFNALGSSVDLTLFDFRNGV 71
>gi|291223461|ref|XP_002731728.1| PREDICTED: methyl-CpG-binding domain type 2/3a-like [Saccoglossus
kowalevskii]
Length = 252
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 93 PGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSV 149
P G+KR V+RK K D YY +P GKK R+ ++A FL LS F F
Sbjct: 13 PKGWKREEVIRKSGLSAGKSDVYYFSPNGKKFRSKPQLARFLG-----DSFDLSTFDFRT 67
Query: 150 PKVMDDTI 157
K+ +I
Sbjct: 68 GKISAASI 75
>gi|241631815|ref|XP_002410284.1| conserved hypothetical protein [Ixodes scapularis]
gi|215503366|gb|EEC12860.1| conserved hypothetical protein [Ixodes scapularis]
Length = 686
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 90 PKTPGGFKRSLVLR---KDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+ R + R + K D Y +P GKK R+ NE+ L S + LS+F
Sbjct: 28 PNLPPGWYRKVTQRQAGRSAGKFDVYIFSPEGKKFRSRNELQAHLEKV--GSPLPLSNFD 85
Query: 147 FSVPKVMDDTI--PEDVVKK 164
F+V + I PE KK
Sbjct: 86 FTVKGLTKGQISAPEATAKK 105
>gi|345482813|ref|XP_001601335.2| PREDICTED: hypothetical protein LOC100116976 [Nasonia vitripennis]
Length = 639
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 10/59 (16%)
Query: 95 GFKRSLVLRKDFSK------MDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTF 147
G+KR LV R S+ D YY TP GKK+R+ EV L SD+++ +FTF
Sbjct: 104 GWKRELVYRAGASENQVRRMADIYYYTPEGKKVRSFREVIVSLTT----SDLTIDNFTF 158
>gi|328716423|ref|XP_003245931.1| PREDICTED: hypothetical protein LOC100574368 [Acyrthosiphon pisum]
Length = 313
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 96 FKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFS-VPKVMD 154
++RS +L D YY +PT KKLR+L E+ L + D+++ +FTFS P M+
Sbjct: 86 YRRSTILNHANRSGDVYYHSPTNKKLRSLREIQEQLDILSD-KDLTIENFTFSPQPIGMN 144
Query: 155 D 155
D
Sbjct: 145 D 145
>gi|395847220|ref|XP_003796279.1| PREDICTED: methyl-CpG-binding domain protein 4 [Otolemur garnettii]
Length = 574
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 93 PGGFKRSLVLR---KDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSV 149
P G++R + R K + D YYI+P G K R+ + +A +L N E S + DF FSV
Sbjct: 86 PCGWERVVKQRLSGKTAGRFDVYYISPQGLKFRSKSSLANYLHKNGEMS-LKPEDFDFSV 144
>gi|346472001|gb|AEO35845.1| hypothetical protein [Amblyomma maculatum]
Length = 248
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 90 PKTPGGFKRSLVLRK---DFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G++R V+R+ K+D YY +P GKK R+ ++A FL + LS F
Sbjct: 7 PALPKGWRREEVIRRGGLSAGKVDVYYYSPGGKKFRSKPQLARFLG-----DALDLSTFD 61
Query: 147 FSVPKV 152
F K+
Sbjct: 62 FRTGKI 67
>gi|410951752|ref|XP_003982557.1| PREDICTED: methyl-CpG-binding domain protein 4 [Felis catus]
Length = 566
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 93 PGGFKRSLVLR---KDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSV 149
P G++R + R K + D Y+I+P G K R+ + +A +L N E S ++ DF F+V
Sbjct: 82 PCGWERVVKQRLSGKTAGRYDVYFISPQGLKFRSKSSLAKYLHKNGETS-LTPEDFDFTV 140
Query: 150 P 150
P
Sbjct: 141 P 141
>gi|440902692|gb|ELR53450.1| Methyl-CpG-binding domain protein 2, partial [Bos grunniens mutus]
Length = 255
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 95 GFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSVPK 151
G+K+ V+RK K D YY +P+GKK R+ ++A +L + V LS F F K
Sbjct: 2 GWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLG-----NTVDLSSFDFRTGK 56
Query: 152 VM 153
+M
Sbjct: 57 MM 58
>gi|332020874|gb|EGI61272.1| F-box/LRR-repeat protein 7 [Acromyrmex echinatior]
Length = 1280
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 9/58 (15%)
Query: 95 GFKRSLVLR--KDFS--KM-DAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTF 147
G+KR LV R D S KM D YY TP GKK+R+ EVA L + ++++ +FTF
Sbjct: 280 GWKRELVYRASNDSSSKKMADIYYYTPAGKKVRSFREVAESLNS----KELTIDNFTF 333
>gi|3800801|gb|AAC68875.1| testis specific methyl-CpG binding protein MBD2, partial [Homo
sapiens]
Length = 146
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 95 GFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSVPK 151
G+K+ V+RK K D YY +P+GKK R+ ++A +L + V LS F F K
Sbjct: 2 GWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLG-----NTVDLSSFDFRTGK 56
Query: 152 VMDDTIPED 160
+M + ++
Sbjct: 57 MMPSKLQKN 65
>gi|349605676|gb|AEQ00832.1| Methyl-CpG-binding domain protein 2-like protein, partial [Equus
caballus]
Length = 255
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 95 GFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSVPK 151
G+K+ V+RK K D YY +P+GKK R+ ++A +L + V LS F F K
Sbjct: 2 GWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLG-----NTVDLSSFDFRTGK 56
Query: 152 VM 153
+M
Sbjct: 57 MM 58
>gi|160420127|ref|NP_001104183.1| methyl-CpG binding domain protein 1 [Xenopus laevis]
gi|159155455|gb|AAI54959.1| LOC779091 protein [Xenopus laevis]
Length = 626
Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 18/95 (18%)
Query: 95 GFKRSLVLRKDFSK---MDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSVPK 151
G+KR + +RK + +D YY +PTG+++R+ E+A +L ++ D+SL DF V
Sbjct: 14 GWKRRISVRKSGASCGHIDIYYRSPTGEQMRSKIELAKYLGSS---VDLSLFDFRNGV-- 68
Query: 152 VMDDTIPEDVVKKGSASSDAKRKPKTSKGVVGDGT 186
+V KG S K+K K + DGT
Sbjct: 69 ---------IVDKGHCSPK-KKKGSQRKSLPADGT 93
>gi|410977690|ref|XP_003995234.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 3 [Felis
catus]
Length = 594
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 95 GFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDF-----T 146
G+KR V RK + D YY +PTG ++R+ E+ +L D++L DF
Sbjct: 14 GWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGP---ACDLTLFDFKQGILC 70
Query: 147 FSVPKVMDDTIPEDVVKKGSASSDAKRK 174
+ PK +P KK S + +++
Sbjct: 71 YPAPKAQPLAVPSRKRKKPSRPAKTRKR 98
>gi|410977692|ref|XP_003995235.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 4 [Felis
catus]
Length = 663
Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 95 GFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDF-----T 146
G+KR V RK + D YY +PTG ++R+ E+ +L D++L DF
Sbjct: 14 GWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPA---CDLTLFDFKQGILC 70
Query: 147 FSVPKVMDDTIPEDVVKKGSASSDAKRK 174
+ PK +P KK S + +++
Sbjct: 71 YPAPKAQPLAVPSRKRKKPSRPAKTRKR 98
>gi|47939475|gb|AAH71531.1| Methyl-CpG binding domain protein 3a [Danio rerio]
Length = 273
Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 93 PGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSV 149
P G+K V RK K D YY +PTGKK R+ ++ +L + + LS F F
Sbjct: 12 PNGWKMEEVTRKSGLSAGKSDVYYFSPTGKKFRSKPQLVRYLGKS-----MDLSSFDFRT 66
Query: 150 PKVMDDTIPEDVVKKGSASSDAKRKPKTSKGVVGDGTA 187
K++ + ++ + S S K KP + + TA
Sbjct: 67 GKMLMSKLNKNRQRIRSDHSQNKGKPDLNTSLTVRQTA 104
>gi|449670049|ref|XP_002168970.2| PREDICTED: uncharacterized protein LOC100214210 [Hydra
magnipapillata]
Length = 1465
Score = 38.1 bits (87), Expect = 2.1, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 110 DAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSV 149
D YY +P GKKLRT E+ ++ N E +D+ L F+FS+
Sbjct: 982 DVYYYSPCGKKLRTYPEINSYMIKN-EITDLQLDYFSFSM 1020
>gi|281348710|gb|EFB24294.1| hypothetical protein PANDA_020519 [Ailuropoda melanoleuca]
Length = 576
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 12/105 (11%)
Query: 95 GFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDF-----T 146
G+KR V RK + D YY +PTG ++R+ E+ +L D++L DF
Sbjct: 14 GWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGP---ACDLTLFDFKQGILC 70
Query: 147 FSVPKVMDDTIPEDVVKKGSASSDA-KRKPKTSKGVVGDGTARDE 190
+ PK +P KK S + KR+ KG V T DE
Sbjct: 71 YPAPKPQPIAVPSRKRKKPSRPAKTRKRQVGPQKGEVRRETPGDE 115
>gi|260829803|ref|XP_002609851.1| hypothetical protein BRAFLDRAFT_126023 [Branchiostoma floridae]
gi|229295213|gb|EEN65861.1| hypothetical protein BRAFLDRAFT_126023 [Branchiostoma floridae]
Length = 298
Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 84 IDRPGIPKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDV 140
+D P +PK G+KR V RK K D YY +P+GKK R+ ++A +L
Sbjct: 6 MDCPALPK---GWKREEVTRKSGLSAGKSDVYYYSPSGKKFRSKPQLARYLG-----DTF 57
Query: 141 SLSDFTFSVPKVMDDTI 157
LS F F K++ +
Sbjct: 58 DLSCFDFRTGKMLSSKV 74
>gi|410977702|ref|XP_003995240.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 9 [Felis
catus]
gi|410977704|ref|XP_003995241.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 10 [Felis
catus]
Length = 632
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 95 GFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDF-----T 146
G+KR V RK + D YY +PTG ++R+ E+ +L D++L DF
Sbjct: 14 GWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGP---ACDLTLFDFKQGILC 70
Query: 147 FSVPKVMDDTIPEDVVKKGSASSDAKRK 174
+ PK +P KK S + +++
Sbjct: 71 YPAPKAQPLAVPSRKRKKPSRPAKTRKR 98
>gi|410977686|ref|XP_003995232.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 1 [Felis
catus]
gi|410977698|ref|XP_003995238.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 7 [Felis
catus]
Length = 607
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 95 GFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDF-----T 146
G+KR V RK + D YY +PTG ++R+ E+ +L D++L DF
Sbjct: 14 GWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGP---ACDLTLFDFKQGILC 70
Query: 147 FSVPKVMDDTIPEDVVKKGSASSDAKRK 174
+ PK +P KK S + +++
Sbjct: 71 YPAPKAQPLAVPSRKRKKPSRPAKTRKR 98
>gi|159466712|ref|XP_001691542.1| predicted protein [Chlamydomonas reinhardtii]
gi|158278888|gb|EDP04650.1| predicted protein [Chlamydomonas reinhardtii]
Length = 1383
Score = 37.7 bits (86), Expect = 2.5, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 63 KPGVSCEDPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSKM-----DAYYITPT 117
K V+ PA+ + + R+W +PG KT GG ++ F+ DA YI P
Sbjct: 179 KTSVAATAPANGQLASFRIWTGTQPGPGKTNGGSGVAVAKLVAFNTTEYFFDDASYINPA 238
Query: 118 GKKLRTLNEVAGFLAANPEYSDVSL 142
+ L N + L A YS VSL
Sbjct: 239 IQSLDLRNVLGTVLIAKASYSTVSL 263
>gi|312383185|gb|EFR28369.1| hypothetical protein AND_03851 [Anopheles darlingi]
Length = 1089
Score = 37.7 bits (86), Expect = 2.5, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 108 KMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSVPKVMDDTIPEDVVKKGSA 167
K + YYITP G+KLRT N++ L + D+++ +FTF V + + E+ ++ S
Sbjct: 229 KGEVYYITPQGRKLRTRNDIVSAL-----HDDLTMDNFTF-VKEPVGGNPEEETIRAKSY 282
Query: 168 SSDAKR 173
+ KR
Sbjct: 283 GNPPKR 288
>gi|159490966|ref|XP_001703444.1| hypothetical protein CHLREDRAFT_143863 [Chlamydomonas reinhardtii]
gi|158280368|gb|EDP06126.1| predicted protein [Chlamydomonas reinhardtii]
Length = 502
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 30 QCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCEDPADI 74
+C +C WR + + +RC F+C + PG +C+ P D+
Sbjct: 452 ECRECGNWRRVRGYGPFVRVRCD-----FICSKLPGRTCQQPCDV 491
>gi|410977694|ref|XP_003995236.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 5 [Felis
catus]
Length = 558
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 95 GFKRSLVLRKDFS---KMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDF-----T 146
G+KR V RK + + D YY +PTG ++R+ E+ +L D++L DF
Sbjct: 14 GWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGP---ACDLTLFDFKQGILC 70
Query: 147 FSVPKVMDDTIPEDVVKKGSASSDAKRK 174
+ PK +P KK S + +++
Sbjct: 71 YPAPKAQPLAVPSRKRKKPSRPAKTRKR 98
>gi|301789485|ref|XP_002930161.1| PREDICTED: methyl-CpG-binding domain protein 1-like [Ailuropoda
melanoleuca]
Length = 643
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 12/105 (11%)
Query: 95 GFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDF-----T 146
G+KR V RK + D YY +PTG ++R+ E+ +L D++L DF
Sbjct: 14 GWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGP---ACDLTLFDFKQGILC 70
Query: 147 FSVPKVMDDTIPEDVVKKGSASSDA-KRKPKTSKGVVGDGTARDE 190
+ PK +P KK S + KR+ KG V T DE
Sbjct: 71 YPAPKPQPIAVPSRKRKKPSRPAKTRKRQVGPQKGEVRRETPGDE 115
>gi|242013163|ref|XP_002427284.1| methyl-cpg-binding protein, putative [Pediculus humanus corporis]
gi|212511625|gb|EEB14546.1| methyl-cpg-binding protein, putative [Pediculus humanus corporis]
Length = 714
Score = 37.7 bits (86), Expect = 2.5, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 90 PKTPGGFKRSLVLR---KDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+KR + +R K +M+ ++P GK+ R+ ++ ++ N + + DF
Sbjct: 479 PTLPPGWKRCIKIRSCGKSAGRMEVIIVSPDGKRHRSKKQLENYILKNK--LNFNSEDFD 536
Query: 147 FSVPKVMDDTIPEDVVKKGSASSDAKRKPKTS 178
FSV T +V+ S+ +K+KPK S
Sbjct: 537 FSVFGKTKKTNNNLIVESKDTSNVSKKKPKPS 568
>gi|432102921|gb|ELK30351.1| Methyl-CpG-binding domain protein 1 [Myotis davidii]
Length = 589
Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 11/95 (11%)
Query: 95 GFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDF-----T 146
G+KR V RK + D YY +PTG ++R+ E+ +L + D++L DF
Sbjct: 14 GWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELIRYLGPS---CDLTLFDFKQGILC 70
Query: 147 FSVPKVMDDTIPEDVVKKGSASSDAKRKPKTSKGV 181
+ PK +P KK S A++ SK V
Sbjct: 71 YPAPKAQSLALPSRKRKKPSKPVKARKCQVGSKRV 105
>gi|410977700|ref|XP_003995239.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 8 [Felis
catus]
Length = 576
Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 95 GFKRSLVLRKDFS---KMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDF-----T 146
G+KR V RK + + D YY +PTG ++R+ E+ +L D++L DF
Sbjct: 14 GWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPA---CDLTLFDFKQGILC 70
Query: 147 FSVPKVMDDTIPEDVVKKGSASSDAKRK 174
+ PK +P KK S + +++
Sbjct: 71 YPAPKAQPLAVPSRKRKKPSRPAKTRKR 98
>gi|47086507|ref|NP_997934.1| methyl-CpG-binding domain protein 3 [Danio rerio]
gi|37681869|gb|AAQ97812.1| methyl-CpG binding domain protein 3 [Danio rerio]
Length = 273
Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 93 PGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSV 149
P G+K V RK K D YY +PTGKK R+ ++ +L + + LS F F
Sbjct: 12 PNGWKMEEVTRKSGLSAGKSDVYYFSPTGKKFRSKPQLVRYLGKS-----MDLSSFDFRT 66
Query: 150 PKVMDDTIPEDVVKKGSASSDAKRKP 175
K++ + ++ + S S K KP
Sbjct: 67 GKMLMSKLNKNRQRIRSDHSQNKGKP 92
>gi|410977688|ref|XP_003995233.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 2 [Felis
catus]
Length = 551
Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 95 GFKRSLVLRKDFS---KMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDF-----T 146
G+KR V RK + + D YY +PTG ++R+ E+ +L D++L DF
Sbjct: 14 GWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPA---CDLTLFDFKQGILC 70
Query: 147 FSVPKVMDDTIPEDVVKKGSASSDAKRK 174
+ PK +P KK S + +++
Sbjct: 71 YPAPKAQPLAVPSRKRKKPSRPAKTRKR 98
>gi|348505486|ref|XP_003440292.1| PREDICTED: methyl-CpG-binding domain protein 2-like [Oreochromis
niloticus]
Length = 265
Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 86 RPGIPKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSL 142
R P P G+K+ V+RK K D YY +P+GKK R+ +++ +L + V L
Sbjct: 5 RTDCPALPPGWKKEEVIRKSGLSAGKSDVYYYSPSGKKFRSKPQLSRYLG-----NTVDL 59
Query: 143 SDFTFSVPKVM 153
+ F F K+M
Sbjct: 60 ACFDFRTGKMM 70
>gi|405967697|gb|EKC32831.1| Methyl-CpG-binding domain protein 2 [Crassostrea gigas]
Length = 248
Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 93 PGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDF 145
P G+KR V+RK K D YYI+P GKK+R+ ++A L E D+S DF
Sbjct: 12 PPGWKREEVVRKSGLSAGKTDVYYISPDGKKIRSKPQLARQLG---EQFDLSAFDF 64
>gi|410977696|ref|XP_003995237.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 6 [Felis
catus]
Length = 505
Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 95 GFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDF-----T 146
G+KR V RK + D YY +PTG ++R+ E+ +L D++L DF
Sbjct: 14 GWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPA---CDLTLFDFKQGILC 70
Query: 147 FSVPKVMDDTIPEDVVKKGSASSDAKRK 174
+ PK +P KK S + +++
Sbjct: 71 YPAPKAQPLAVPSRKRKKPSRPAKTRKR 98
>gi|242025014|ref|XP_002432921.1| hypothetical protein Phum_PHUM604760 [Pediculus humanus corporis]
gi|212518430|gb|EEB20183.1| hypothetical protein Phum_PHUM604760 [Pediculus humanus corporis]
Length = 1280
Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 10/58 (17%)
Query: 95 GFKRSLVLRKDFSK-----MDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTF 147
G+KR +V R SK D YY P+GKKLR+L EV+ L +++ +FTF
Sbjct: 278 GWKREVVTRAITSKEDGISKDVYYFHPSGKKLRSLREVSEKLTPG-----LTIENFTF 330
>gi|47210325|emb|CAF91173.1| unnamed protein product [Tetraodon nigroviridis]
Length = 290
Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 90 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+K+ V+RK K D YY +P+GKK R+ +++ +L + V L+ F
Sbjct: 9 PALPPGWKKEEVIRKSGLSAGKSDVYYYSPSGKKFRSKPQLSRYLG-----NAVDLACFD 63
Query: 147 FSVPKVM 153
F K+M
Sbjct: 64 FRTGKMM 70
>gi|427779301|gb|JAA55102.1| Putative histone-lysine n-methyltransferase setb1 [Rhipicephalus
pulchellus]
Length = 1169
Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 95 GFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTF-SVPKVM 153
G++R +V + SK +Y+ P G++LR ++EV +L V L F F S+ V
Sbjct: 576 GWERHIVKQSKRSKRRVFYVAPCGRRLRNIDEVVHYLETCKSLLTVDL--FCFDSLVNVF 633
Query: 154 DDTIPEDV 161
+PE V
Sbjct: 634 CQFVPETV 641
>gi|427785369|gb|JAA58136.1| Putative set domain bifurcated 1b [Rhipicephalus pulchellus]
Length = 1104
Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 95 GFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTF-SVPKVM 153
G++R +V + SK +Y+ P G++LR ++EV +L V L F F S+ V
Sbjct: 576 GWERHIVKQSKRSKRRVFYVAPCGRRLRNIDEVVHYLETCKSLLTVDL--FCFDSLVNVF 633
Query: 154 DDTIPEDV 161
+PE V
Sbjct: 634 CQFVPETV 641
>gi|115725067|ref|XP_783908.2| PREDICTED: uncharacterized protein LOC578658 [Strongylocentrotus
purpuratus]
Length = 550
Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 93 PGGFKRSLVLRKDFS---KMDAYYITPTGKKLRTLNEVAGFL-AANPEYSDVSLSDFTFS 148
P G+ R + R + K D Y +P GK+LR++ EVA L N Y+ +DF F
Sbjct: 138 PTGWTRKITERMSGASAGKFDVYLTSPEGKRLRSMKEVADHLEKTNSTYTS---ADFIFK 194
Query: 149 VPKVMDDTIPEDV-VKKGSASSDAKRKP 175
+ IP + V S + AKR P
Sbjct: 195 PKNLKPSAIPAALRVPTKSETRPAKRSP 222
>gi|303281052|ref|XP_003059818.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458473|gb|EEH55770.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 660
Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 9/64 (14%)
Query: 93 PGGFKRSLV------LRKDF--SKMDAYYITPTGKKLRTLNEVAGFLAANPEYSD-VSLS 143
P G+KR++V L+K+ + D +Y +P GK L++ +EV +L +NP S V++
Sbjct: 392 PEGWKRTVVKRPAGTLKKNTPDADRDTFYRSPDGKTLKSKHEVTKYLGSNPSASHGVTVK 451
Query: 144 DFTF 147
DF F
Sbjct: 452 DFFF 455
>gi|328716899|ref|XP_003246069.1| PREDICTED: hypothetical protein LOC100569670, partial
[Acyrthosiphon pisum]
Length = 381
Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 36/74 (48%), Gaps = 12/74 (16%)
Query: 95 GFKRSLVLRKDFSK------MDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLS--DFT 146
G+KR LV RK D YY +P KKLR+ E+ L SD +LS +FT
Sbjct: 116 GWKRELVYRKSIKHSHKNRIFDVYYHSPANKKLRSKREIQKQLDI---LSDKNLSIENFT 172
Query: 147 FS-VPKVMDDTIPE 159
FS P M+D E
Sbjct: 173 FSPQPIAMNDRSKE 186
>gi|357610614|gb|EHJ67065.1| putative methyl-CpG binding transcription regulator [Danaus
plexippus]
Length = 251
Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Query: 93 PGGFKRSLVLRK---DFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTF 147
P G++R V+RK K+D YY +PTGKK R+ +E+ +L V+LS F +
Sbjct: 16 PKGWQREEVVRKTGLSAGKVDVYYYSPTGKKCRSKSELVRYLG-----DSVNLSYFDY 68
>gi|159163105|pdb|1UB1|A Chain A, Solution Structure Of The Matrix Attachment Region-Binding
Domain Of Chicken Mecp2
Length = 133
Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 44/107 (41%), Gaps = 20/107 (18%)
Query: 90 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSL--SD 144
P P G+ R L RK K D Y I P GK R+ E+ + + D SL +D
Sbjct: 36 PTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFE---KVGDTSLDPND 92
Query: 145 FTFSVPKVMDDTIPEDVVKKGSASSDAKRKPKTSKGVVGDGTARDEG 191
F F+V +GS S +R PK +K G+ R G
Sbjct: 93 FDFTV------------TGRGSPSRREQRPPKKAKSPKSPGSGRGRG 127
>gi|301628286|ref|XP_002943288.1| PREDICTED: methyl-CpG-binding domain protein 1 [Xenopus (Silurana)
tropicalis]
Length = 601
Score = 36.2 bits (82), Expect = 6.5, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 95 GFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDF 145
G+KR + +RK D YY +PTG+K+R+ E+A + A D++L DF
Sbjct: 14 GWKRRIAVRKSGVSCGHTDTYYKSPTGEKIRSRIELAKYFNALGSSVDLTLFDF 67
>gi|47086513|ref|NP_997933.1| methyl-CpG-binding domain protein 2 [Danio rerio]
gi|29692019|gb|AAO91661.1| methyl-CpG binding protein 2 [Danio rerio]
gi|62204526|gb|AAH93117.1| Mbd2 protein [Danio rerio]
gi|157422758|gb|AAI53556.1| Methyl-CpG binding domain protein 2 [Danio rerio]
gi|182888962|gb|AAI64452.1| Mbd2 protein [Danio rerio]
Length = 256
Score = 36.2 bits (82), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 86 RPGIPKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSL 142
R P P G+K+ V+RK K D YY +P GKK R+ +++ +L + V L
Sbjct: 5 RTDCPALPPGWKKEEVIRKSGLSAGKSDVYYYSPKGKKFRSKPQLSRYLG-----NTVDL 59
Query: 143 SDFTFSVPKVM 153
F F K+M
Sbjct: 60 GCFDFRTGKMM 70
>gi|410903269|ref|XP_003965116.1| PREDICTED: methyl-CpG-binding domain protein 2-like [Takifugu
rubripes]
Length = 265
Score = 36.2 bits (82), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 90 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+K+ V+RK K D YY +P+GKK R+ +++ +L + V L F
Sbjct: 9 PALPPGWKKEEVIRKSGLSAGKSDVYYYSPSGKKFRSKPQLSRYLG-----NAVDLGCFD 63
Query: 147 FSVPKVM 153
F K+M
Sbjct: 64 FRTGKMM 70
>gi|192759051|gb|ACF05483.1| methyl-CpG-binding domain type 2/3a [Patiria pectinifera]
Length = 268
Score = 36.2 bits (82), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 90 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+K+ V+RK K D YY +P G+K R+ ++A FL + L+ F
Sbjct: 10 PFLPKGWKKEEVIRKSGLSAGKTDIYYHSPCGRKFRSKPQLARFLG-----DAIDLTSFD 64
Query: 147 FSVPKVM 153
F K++
Sbjct: 65 FRTGKLL 71
>gi|192759053|gb|ACF05484.1| methyl-CpG-binding domain type 2/3b [Patiria pectinifera]
Length = 260
Score = 36.2 bits (82), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 90 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+K+ V+RK K D YY +P G+K R+ ++A FL + L+ F
Sbjct: 10 PFLPKGWKKEEVIRKSGLSAGKTDIYYHSPCGRKFRSKPQLARFLG-----DAIDLTSFD 64
Query: 147 FSVPKVM 153
F K++
Sbjct: 65 FRTGKLL 71
>gi|148225943|ref|NP_001080512.1| methyl-CpG binding domain protein 1 [Xenopus laevis]
gi|27694795|gb|AAH43835.1| Mbd1-prov protein [Xenopus laevis]
Length = 321
Score = 36.2 bits (82), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 95 GFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSVPK 151
G+KR V+RK D YY +P GKK+R+ E+A +L S V LS F F
Sbjct: 14 GWKRRNVVRKSGATCGHSDTYYRSPAGKKIRSRIELAKYLG-----SAVDLSFFDFRNGV 68
Query: 152 VMD 154
++D
Sbjct: 69 IVD 71
>gi|405960128|gb|EKC26075.1| Methyl-CpG-binding domain protein 4 [Crassostrea gigas]
Length = 826
Score = 36.2 bits (82), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 73 DIEYDASRVWVIDRPGIPKTPGGFKRSLVLR---KDFSKMDAYYITPTGKKLRTLNEVAG 129
D YD S + ++D+ + P G+ R +V R K K D Y +P+G+KLR+ ++A
Sbjct: 175 DHTYDVSPM-LLDK----QLPKGWTRKVVQRLSGKSAGKYDVYIYSPSGRKLRSKTDLAR 229
Query: 130 FLAANPEYSDVSLSDFTFSV 149
+L ++++ DF F+V
Sbjct: 230 YLEEEG-ITELTADDFDFTV 248
>gi|432853519|ref|XP_004067747.1| PREDICTED: methyl-CpG-binding domain protein 3-like isoform 1
[Oryzias latipes]
Length = 274
Score = 36.2 bits (82), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 93 PGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSV 149
P G+K V RK K D YY +P+GKK R+ ++A +L + + LS F F
Sbjct: 12 PKGWKMEEVTRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLG-----NQMDLSSFDFRT 66
Query: 150 PKVM 153
K++
Sbjct: 67 GKML 70
>gi|168185837|ref|ZP_02620472.1| shikimate kinase [Clostridium botulinum C str. Eklund]
gi|169296067|gb|EDS78200.1| shikimate kinase [Clostridium botulinum C str. Eklund]
Length = 164
Score = 36.2 bits (82), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 80 RVWVIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSD 139
+ +I PG KT G K S +L DF +D Y + TGK ++NE+ F + D
Sbjct: 7 NIVLIGMPGCGKTTIGRKLSEILNADFCDVDEYIVDITGK---SINEI--FENGEEFFRD 61
Query: 140 V---SLSDFTFSVPKVM 153
+ S+ + + S+PKV+
Sbjct: 62 IESQSIKEVSSSIPKVI 78
>gi|148677584|gb|EDL09531.1| methyl-CpG binding domain protein 1, isoform CRA_b [Mus musculus]
Length = 556
Score = 35.8 bits (81), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 95 GFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDF 145
G+KR RK F + D YY +PTG+K+R+ E+ +L D++L DF
Sbjct: 14 GWKRRESFRKSGASFGRSDIYYQSPTGEKIRSKVELTRYLGPA---CDLTLFDF 64
>gi|47215634|emb|CAG01351.1| unnamed protein product [Tetraodon nigroviridis]
Length = 261
Score = 35.8 bits (81), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 93 PGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSV 149
P G+K V RK K D YY +P+GKK R+ ++A +L + + LS F F
Sbjct: 12 PKGWKMEEVTRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLG-----NQMDLSSFDFRT 66
Query: 150 PKVM 153
K++
Sbjct: 67 GKML 70
>gi|148677586|gb|EDL09533.1| methyl-CpG binding domain protein 1, isoform CRA_d [Mus musculus]
Length = 520
Score = 35.8 bits (81), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 95 GFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDF 145
G+KR RK F + D YY +PTG+K+R+ E+ +L D++L DF
Sbjct: 14 GWKRRESFRKSGASFGRSDIYYQSPTGEKIRSKVELTRYLGPA---CDLTLFDF 64
>gi|321478353|gb|EFX89310.1| hypothetical protein DAPPUDRAFT_310291 [Daphnia pulex]
Length = 496
Score = 35.8 bits (81), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 95 GFKRSLVLRKDFSK---MDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSVPK 151
G+KR +V R + + D YY +P GKKLR+ E++ L N S ++L FTF K
Sbjct: 171 GWKREIVYRTNPNTKILCDVYYHSPEGKKLRSGPEISNHL--NEISSRLTLEHFTFC--K 226
Query: 152 VMDDTIPEDVVKKGSASSDAKRKPKTSKGVV 182
+ +++V+K + S KT+K V
Sbjct: 227 DLIGVGTQEIVRKANPKSYRLSNAKTAKLSV 257
>gi|321458695|gb|EFX69759.1| hypothetical protein DAPPUDRAFT_300697 [Daphnia pulex]
Length = 953
Score = 35.8 bits (81), Expect = 8.9, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 13/82 (15%)
Query: 81 VWVIDRPGIPKTPGGFKRSLVLRKDF-----SKMDAYYITPTGKKLRTLNEVAGFLAANP 135
VW P + G++R +V R + D YY TP GKKLR+ EV+ FL
Sbjct: 233 VWCFSPPLL-----GWRREVVYRATVDPGTKTLCDVYYYTPDGKKLRSGREVSDFLEKGN 287
Query: 136 EYSDVSLSDFT-FSVPKVMDDT 156
S ++ +FT F P MD T
Sbjct: 288 --STYTVENFTFFKEPIGMDST 307
>gi|351710467|gb|EHB13386.1| Methyl-CpG-binding domain protein 1 [Heterocephalus glaber]
Length = 622
Score = 35.8 bits (81), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 95 GFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDF-----T 146
G+KR V RK + D YY +PTG ++R+ E+ +L D+SL DF
Sbjct: 14 GWKRREVYRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPA---CDLSLFDFKQGILC 70
Query: 147 FSVPKVMDDTI 157
+S PK I
Sbjct: 71 YSAPKARSVVI 81
>gi|148677585|gb|EDL09532.1| methyl-CpG binding domain protein 1, isoform CRA_c [Mus musculus]
Length = 569
Score = 35.8 bits (81), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 95 GFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDF 145
G+KR RK F + D YY +PTG+K+R+ E+ +L D++L DF
Sbjct: 14 GWKRRESFRKSGASFGRSDIYYQSPTGEKIRSKVELTRYLGPA---CDLTLFDF 64
>gi|51703367|gb|AAH80900.1| mbd1 protein [Xenopus (Silurana) tropicalis]
Length = 640
Score = 35.8 bits (81), Expect = 9.5, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 95 GFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDF 145
G+KR + +RK D YY +PTG+K+R+ E+A + A D++L DF
Sbjct: 22 GWKRRIAVRKSGVSCGHTDTYYKSPTGEKIRSRIELAKYFDALGSSVDLTLFDF 75
>gi|5731990|gb|AAD48908.1|AF120978_1 methyl-CpG binding protein 1 [Mus musculus domesticus]
gi|3800789|gb|AAC68869.1| methyl-CpG binding protein MBD1 [Mus musculus]
Length = 636
Score = 35.8 bits (81), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 95 GFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDF 145
G+KR RK F + D YY +PTG+K+R+ E+ +L D++L DF
Sbjct: 14 GWKRRESFRKSGASFGRSDIYYQSPTGEKIRSKVELTRYLGPA---CDLTLFDF 64
>gi|74184170|dbj|BAE37086.1| unnamed protein product [Mus musculus]
Length = 298
Score = 35.8 bits (81), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 89 IPKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDF 145
P G+KR RK F + D YY +PTG+K+R+ E+ +L D++L DF
Sbjct: 8 CPALGPGWKRRESFRKSGASFGRSDIYYQSPTGEKIRSKVELTRYLGPA---CDLTLFDF 64
>gi|148677587|gb|EDL09534.1| methyl-CpG binding domain protein 1, isoform CRA_e [Mus musculus]
Length = 628
Score = 35.8 bits (81), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 95 GFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDF 145
G+KR RK F + D YY +PTG+K+R+ E+ +L D++L DF
Sbjct: 14 GWKRRESFRKSGASFGRSDIYYQSPTGEKIRSKVELTRYLGPA---CDLTLFDF 64
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.314 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,295,160,239
Number of Sequences: 23463169
Number of extensions: 137381010
Number of successful extensions: 228349
Number of sequences better than 100.0: 295
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 207
Number of HSP's that attempted gapping in prelim test: 228058
Number of HSP's gapped (non-prelim): 304
length of query: 196
length of database: 8,064,228,071
effective HSP length: 135
effective length of query: 61
effective length of database: 9,191,667,552
effective search space: 560691720672
effective search space used: 560691720672
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 73 (32.7 bits)