BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029286
(196 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LYB9|MBD4_ARATH Methyl-CpG-binding domain-containing protein 4 OS=Arabidopsis
thaliana GN=MBD4 PE=2 SV=1
Length = 186
Score = 217 bits (552), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 97/141 (68%), Positives = 117/141 (82%)
Query: 20 PIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCEDPADIEYDAS 79
P R IDTYAAQC+ C KWRVI+S EEYE+IR K+ E PF C +K G+SCE+PADI+YD+S
Sbjct: 21 PGRLIDTYAAQCDNCHKWRVIDSQEEYEDIRSKMLEDPFNCQKKQGMSCEEPADIDYDSS 80
Query: 80 RVWVIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSD 139
R WVID+PG+PKTP GFKRSLVLRKD+SKMD YY TPTGKKLR+ NE+A F+ ANPE+ +
Sbjct: 81 RTWVIDKPGLPKTPKGFKRSLVLRKDYSKMDTYYFTPTGKKLRSRNEIAAFVEANPEFRN 140
Query: 140 VSLSDFTFSVPKVMDDTIPED 160
L DF F+VPKVM+DT+P D
Sbjct: 141 APLGDFNFTVPKVMEDTVPPD 161
>sp|Q5XEN5|MBD1_ARATH Methyl-CpG-binding domain-containing protein 1 OS=Arabidopsis
thaliana GN=MBD1 PE=2 SV=1
Length = 204
Score = 207 bits (526), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 95/170 (55%), Positives = 123/170 (72%), Gaps = 8/170 (4%)
Query: 15 RGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCEDPADI 74
+ G P RSID +A QCEKC KWR I++ +EYE+IR ++ E PF C K GVSCED D+
Sbjct: 43 KKAGTPGRSIDVFAVQCEKCMKWRKIDTQDEYEDIRSRVQEDPFFCKTKEGVSCEDVGDL 102
Query: 75 EYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAAN 134
YD+SR WVID+PG+P+TP GFKRSL+LRKD+SKMDAYYITPTGKKL++ NE+A F+ AN
Sbjct: 103 NYDSSRTWVIDKPGLPRTPRGFKRSLILRKDYSKMDAYYITPTGKKLKSRNEIAAFIDAN 162
Query: 135 PEYSDVSLSDFTFSVPKVMDDTIPEDVVKKGSASSDAKRKPKTSKGVVGD 184
+Y L DF F+VPKVM++T+P ++ + R PK S+ V D
Sbjct: 163 QDYKYALLGDFNFTVPKVMEETVPSGIL--------SDRTPKPSRKVTID 204
>sp|Q8LA53|MBD2_ARATH Methyl-CpG-binding domain-containing protein 2 OS=Arabidopsis
thaliana GN=MBD2 PE=1 SV=1
Length = 272
Score = 132 bits (331), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 99/172 (57%), Gaps = 12/172 (6%)
Query: 4 KQETLKTASKPRGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR- 62
++E L S+P SI + QC CFKWR++ S ++YEEIR ++ E PF CD
Sbjct: 36 EEEVLPVQSQPLSSRTQCPSIGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTA 95
Query: 63 ---KPGVSCEDPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSK--MDAYYITPT 117
KP +SC+ PADI D +R+W ID+P I + P G++R L +R + D YY+ P+
Sbjct: 96 REWKPDISCDVPADIYQDGTRLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPS 155
Query: 118 GKKLRTLNEVAGFLAANPEY--SDVSLSDFTFSVPKVMDDTIPEDVVKKGSA 167
GKKLR+ EV +L N EY V LS F+F +PK + D D V+K A
Sbjct: 156 GKKLRSTVEVQKYLNDNSEYIGEGVKLSQFSFQIPKPLQD----DYVRKRPA 203
>sp|Q4PSK1|MBD3_ARATH Methyl-CpG-binding domain-containing protein 3 OS=Arabidopsis
thaliana GN=MBD3 PE=2 SV=1
Length = 163
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 78/130 (60%), Gaps = 10/130 (7%)
Query: 24 IDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCEDPAD--IEYDASRV 81
ID+YAAQC KC K R I S E+YEEIR K E F C R CE+P D + +D+ +
Sbjct: 9 IDSYAAQCWKCLKVRSIESQEDYEEIRSKTLEKFFECKR-----CEEPGDMVMNFDSLTM 63
Query: 82 -WVIDRPGIPKTPGGFKRSLVLRKDFSKMDAYY--ITPTGKKLRTLNEVAGFLAANPEYS 138
W D IPKTP G KR LV+R + K+D YY + P K+ +++ EVA F+ E+
Sbjct: 64 RWFQDEHSIPKTPQGLKRVLVVRTNCVKVDVYYESLAPRRKRFKSIKEVATFIEDKEEFK 123
Query: 139 DVSLSDFTFS 148
D++L + +F+
Sbjct: 124 DMTLEEVSFA 133
>sp|Q9FZP6|MBD12_ARATH Putative methyl-CpG-binding domain protein 12 OS=Arabidopsis
thaliana GN=MBD12 PE=3 SV=1
Length = 155
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 70/135 (51%), Gaps = 13/135 (9%)
Query: 29 AQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR----KPGVSCEDPADIEYDASRVWVI 84
QC C KWR+I S + Y I+ + PFVC P +SC P D W
Sbjct: 2 VQCTDCKKWRLIPSMQHYNIIKETQLQTPFVCGTTSGWTPNMSCNVPQD--GTTCDTW-- 57
Query: 85 DRPGIPKTPGGFKRSLVLRKDFSKM-DAYYITPTGKKLRTLNEVAGFLAANPEY--SDVS 141
P IP P G+ RS+ +R + +K D YY P+G++LR+ EV FL +PEY V+
Sbjct: 58 --PSIPPIPTGWSRSVHIRSESTKFADVYYFPPSGERLRSSAEVQSFLDNHPEYVREGVN 115
Query: 142 LSDFTFSVPKVMDDT 156
S F+F +PK +DD
Sbjct: 116 RSQFSFQIPKPLDDN 130
>sp|Q9UBB5|MBD2_HUMAN Methyl-CpG-binding domain protein 2 OS=Homo sapiens GN=MBD2 PE=1
SV=1
Length = 411
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 90 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+K+ V+RK K D YY +P+GKK R+ ++A +L + V LS F
Sbjct: 153 PALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLG-----NTVDLSSFD 207
Query: 147 FSVPKVM 153
F K+M
Sbjct: 208 FRTGKMM 214
>sp|Q9Z2E1|MBD2_MOUSE Methyl-CpG-binding domain protein 2 OS=Mus musculus GN=Mbd2 PE=2
SV=2
Length = 414
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 90 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 146
P P G+K+ V+RK K D YY +P+GKK R+ ++A +L + V LS F
Sbjct: 156 PALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLG-----NAVDLSSFD 210
Query: 147 FSVPKVM 153
F K+M
Sbjct: 211 FRTGKMM 217
>sp|Q9Z2E2|MBD1_MOUSE Methyl-CpG-binding domain protein 1 OS=Mus musculus GN=Mbd1 PE=1
SV=2
Length = 636
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 95 GFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDF 145
G+KR RK F + D YY +PTG+K+R+ E+ +L D++L DF
Sbjct: 14 GWKRRESFRKSGASFGRSDIYYQSPTGEKIRSKVELTRYLGPA---CDLTLFDF 64
>sp|O95243|MBD4_HUMAN Methyl-CpG-binding domain protein 4 OS=Homo sapiens GN=MBD4 PE=1
SV=1
Length = 580
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 93 PGGFKRSLVLR---KDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSV 149
P G++R + R K + D Y+I+P G K R+ + +A +L N E S + DF F+V
Sbjct: 87 PCGWERVVKQRLFGKTAGRFDVYFISPQGLKFRSKSSLANYLHKNGETS-LKPEDFDFTV 145
>sp|Q9Z2D7|MBD4_MOUSE Methyl-CpG-binding domain protein 4 OS=Mus musculus GN=Mbd4 PE=1
SV=1
Length = 554
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 88 GIPKTPGGFKRSLVLR---KDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSD 144
G P G++R + R K K D Y+I+P G K R+ +A +L N E + + D
Sbjct: 69 GHKPVPCGWERVVKQRLSGKTAGKFDVYFISPQGLKFRSKRSLANYLLKNGE-TFLKPED 127
Query: 145 FTFSV 149
F F+V
Sbjct: 128 FNFTV 132
>sp|Q9UIS9|MBD1_HUMAN Methyl-CpG-binding domain protein 1 OS=Homo sapiens GN=MBD1 PE=1
SV=2
Length = 605
Score = 34.7 bits (78), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 95 GFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDF-----T 146
G+KR V RK + D YY +PTG ++R+ E+ +L D++L DF
Sbjct: 14 GWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGP---ACDLTLFDFKQGILC 70
Query: 147 FSVPKVMDDTIPEDVVKKGSASSDA-KRKPKTSKGVVGDGTARDE 190
+ PK + KK S + KR+ G V RDE
Sbjct: 71 YPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDE 115
>sp|Q32KD2|SETB1_DROME Histone-lysine N-methyltransferase eggless OS=Drosophila
melanogaster GN=egg PE=1 SV=1
Length = 1262
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 95 GFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSVPKVMD 154
G++R LV+R+ +K Y P GK LR+L EV +L A +V DFT + + +
Sbjct: 831 GWER-LVMRQK-TKKSVVYKGPCGKSLRSLAEVHRYLRATENVLNVDNFDFTPDLKCLAE 888
Query: 155 DTIPEDVVK 163
+I +VK
Sbjct: 889 YSIDPSIVK 897
>sp|Q86VD1|MORC1_HUMAN MORC family CW-type zinc finger protein 1 OS=Homo sapiens GN=MORC1
PE=2 SV=2
Length = 984
Score = 31.6 bits (70), Expect = 4.0, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 27 YAAQCEKCFKWRVINSSEEYEE 48
+ QC+ C KWRV+ SS Y+E
Sbjct: 482 FIIQCDLCLKWRVLPSSTNYQE 503
>sp|Q9WVL5|MORC1_MOUSE MORC family CW-type zinc finger protein 1 OS=Mus musculus GN=Morc1
PE=2 SV=1
Length = 950
Score = 31.2 bits (69), Expect = 4.4, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 27 YAAQCEKCFKWRVINSSEEYEE 48
+ QC+ C KWRV+ SS Y+E
Sbjct: 481 FILQCDLCLKWRVLPSSSNYQE 502
>sp|Q13464|ROCK1_HUMAN Rho-associated protein kinase 1 OS=Homo sapiens GN=ROCK1 PE=1 SV=1
Length = 1354
Score = 30.4 bits (67), Expect = 7.7, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 1 MEDKQETLKTASKPRGGGEPIRSIDTYAAQCEKCFK--WRVINSSEEYEEIRCKIAEIPF 58
ME Q+ KT + G E I ++ + A C+ C K W V E RC +
Sbjct: 1212 MEPVQQAEKTNFQNHKGHEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCHRD 1271
Query: 59 VCDRKPGVSCEDPADIEYDAS 79
D+K + C P + YD +
Sbjct: 1272 HLDKKEDLIC--PCKVSYDVT 1290
>sp|P61584|ROCK1_PANTR Rho-associated protein kinase 1 (Fragment) OS=Pan troglodytes
GN=ROCK1 PE=3 SV=1
Length = 1003
Score = 30.0 bits (66), Expect = 9.3, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 1 MEDKQETLKTASKPRGGGEPIRSIDTYAAQCEKCFK--WRVINSSEEYEEIRCKIAEIPF 58
ME Q+ KT + G E I ++ + A C+ C K W V E RC +
Sbjct: 861 MEPVQQAEKTNFQNHKGHEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCHRD 920
Query: 59 VCDRKPGVSCEDPADIEYDAS 79
D+K + C P + YD +
Sbjct: 921 HLDKKEDLIC--PCKVSYDVT 939
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,637,702
Number of Sequences: 539616
Number of extensions: 3314177
Number of successful extensions: 5394
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 5371
Number of HSP's gapped (non-prelim): 26
length of query: 196
length of database: 191,569,459
effective HSP length: 111
effective length of query: 85
effective length of database: 131,672,083
effective search space: 11192127055
effective search space used: 11192127055
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)