Query 029286
Match_columns 196
No_of_seqs 119 out of 183
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 17:04:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029286.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029286hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ub1_A MECP2, attachment regio 99.9 2.9E-27 1E-31 189.5 11.5 113 71-193 13-133 (133)
2 3vxv_A Methyl-CPG-binding doma 99.9 3.4E-25 1.2E-29 159.7 6.3 59 91-150 5-66 (69)
3 3c2i_A Methyl-CPG-binding prot 99.9 6E-25 2E-29 168.1 7.3 65 90-155 22-89 (97)
4 2ky8_A Methyl-CPG-binding doma 99.9 2E-24 6.9E-29 156.6 6.7 60 89-153 10-72 (72)
5 1d9n_A Methyl-CPG-binding prot 99.9 3.9E-24 1.3E-28 156.5 5.2 62 89-155 8-72 (75)
6 2l7p_A Histone-lysine N-methyl 98.5 2.6E-08 9E-13 76.4 2.0 49 23-75 23-74 (100)
7 2e61_A Zinc finger CW-type PWW 97.8 6.4E-06 2.2E-10 59.1 1.8 50 21-75 11-65 (69)
8 4gut_A Lysine-specific histone 90.9 0.016 5.5E-07 56.0 -3.0 62 26-91 91-163 (776)
9 2law_A Yorkie homolog; YAP, SM 76.3 2.4 8.1E-05 26.1 3.0 23 89-116 4-26 (38)
10 1yw5_A Peptidyl prolyl CIS/tra 70.1 3.8 0.00013 32.4 3.7 41 92-136 8-55 (177)
11 1wr3_A Ubiquitin-protein ligas 68.1 5.1 0.00017 24.0 3.1 23 89-116 2-24 (36)
12 2jv4_A Peptidyl-prolyl CIS/tra 66.7 3.6 0.00012 27.5 2.4 39 91-133 7-52 (54)
13 1i5h_W Rnedd4, ubiquitin ligas 64.6 5.8 0.0002 26.0 3.1 27 87-118 7-33 (50)
14 2djy_A SMAD ubiquitination reg 61.2 8.8 0.0003 24.2 3.4 23 89-116 5-27 (42)
15 2ysg_A Syntaxin-binding protei 61.0 8.4 0.00029 23.8 3.2 23 90-117 6-28 (40)
16 2ho2_A Fe65 protein, amyloid b 60.7 5 0.00017 25.2 2.1 20 91-116 3-22 (38)
17 2kyk_A E3 ubiquitin-protein li 56.5 14 0.00048 22.5 3.7 24 89-117 4-27 (39)
18 2l4j_A YES-associated protein 51.3 14 0.00047 23.7 3.1 22 90-116 10-31 (46)
19 2zaj_A Membrane-associated gua 48.7 21 0.00072 23.3 3.7 23 90-117 12-34 (49)
20 2ysf_A E3 ubiquitin-protein li 48.4 17 0.00057 22.5 3.1 23 90-117 6-28 (40)
21 2kpz_A E3 ubiquitin-protein li 48.0 12 0.00043 24.1 2.5 24 89-117 10-33 (49)
22 1wr4_A Ubiquitin-protein ligas 47.3 19 0.00066 21.1 3.1 24 90-118 3-26 (36)
23 2ysb_A Salvador homolog 1 prot 46.0 10 0.00036 24.7 1.9 21 92-117 12-32 (49)
24 1wr7_A NEDD4-2; all-beta, liga 45.6 14 0.00048 22.9 2.4 22 90-116 7-28 (41)
25 2ez5_W Dnedd4, E3 ubiquitin-pr 45.0 11 0.00037 24.2 1.8 22 91-117 10-31 (46)
26 2ku7_A MLL1 PHD3-CYP33 RRM chi 43.8 11 0.00037 26.9 1.9 33 29-61 3-39 (140)
27 2e45_A Fe65 protein, amyloid b 42.9 13 0.00044 25.6 2.0 25 90-120 18-43 (55)
28 2ysh_A GAS-7, growth-arrest-sp 42.8 26 0.0009 21.2 3.3 22 90-116 6-27 (40)
29 1ymz_A CC45; artificial protei 41.7 18 0.00061 22.4 2.4 21 91-116 8-28 (43)
30 2ysd_A Membrane-associated gua 41.6 17 0.00059 24.5 2.5 24 89-117 12-35 (57)
31 2dmv_A Itchy homolog E3 ubiqui 41.2 24 0.00083 21.9 3.0 22 90-116 6-27 (43)
32 3tvt_B PINS, partner of inscut 40.5 15 0.00051 24.7 2.0 25 98-122 18-43 (50)
33 1wmv_A WWOX, WW domain contain 40.0 18 0.00062 24.0 2.4 25 89-118 9-33 (54)
34 1e0m_A Wwprototype; SH3 protot 39.6 16 0.00053 21.7 1.8 21 91-116 3-23 (37)
35 2dwv_A Salvador homolog 1 prot 37.2 41 0.0014 21.8 3.7 23 90-117 12-34 (49)
36 1tk7_A CG4244-PB; WW domain, n 33.5 37 0.0013 24.0 3.3 23 89-116 10-32 (88)
37 2eom_A ZFP-95, zinc finger pro 30.4 23 0.00077 20.4 1.5 31 29-61 13-44 (46)
38 2ysc_A Amyloid beta A4 precurs 30.3 29 0.00098 21.7 2.0 9 91-99 8-16 (39)
39 2eor_A Zinc finger protein 224 29.4 30 0.001 19.5 1.9 31 29-61 13-44 (46)
40 2l3a_A Uncharacterized protein 28.1 55 0.0019 24.2 3.5 39 91-129 20-66 (82)
41 2kxq_A E3 ubiquitin-protein li 27.7 53 0.0018 23.3 3.3 23 91-118 9-31 (90)
42 3tc5_A Peptidyl-prolyl CIS-tra 25.9 38 0.0013 26.7 2.5 22 91-116 9-30 (166)
43 2v0f_A Chromodomain-helicase-D 25.7 27 0.00094 25.9 1.5 21 117-137 31-51 (87)
44 2ytk_A Zinc finger protein 347 25.3 67 0.0023 18.1 3.0 31 29-61 13-44 (46)
45 2yse_A Membrane-associated gua 24.7 70 0.0024 21.8 3.3 25 90-119 12-36 (60)
46 2jsp_A Transcriptional regulat 24.7 50 0.0017 24.4 2.8 31 109-145 19-49 (87)
47 2eow_A Zinc finger protein 347 24.5 37 0.0013 19.1 1.7 31 29-61 13-44 (46)
48 2en9_A Zinc finger protein 28 24.3 41 0.0014 19.1 1.8 31 29-61 13-44 (46)
49 1fme_A FSD-EY peptide; beta-BE 24.1 41 0.0014 20.1 1.8 17 117-133 8-24 (28)
50 2ytp_A Zinc finger protein 484 23.7 28 0.00095 19.9 1.0 31 29-61 13-44 (46)
51 3lv0_A Extragenic suppressor p 22.9 58 0.002 27.0 3.2 35 46-87 58-92 (267)
52 2emj_A Zinc finger protein 28 22.7 48 0.0016 18.8 1.9 31 29-61 13-44 (46)
53 2em4_A Zinc finger protein 28 22.6 48 0.0016 18.8 1.9 31 29-61 13-44 (46)
54 2eof_A Zinc finger protein 268 22.4 47 0.0016 18.4 1.8 31 29-61 13-44 (44)
55 2yto_A Zinc finger protein 484 22.4 41 0.0014 19.1 1.6 31 29-61 13-44 (46)
56 2emz_A ZFP-95, zinc finger pro 22.3 39 0.0013 19.2 1.5 31 29-61 13-44 (46)
57 2em6_A Zinc finger protein 224 22.3 28 0.00097 19.8 0.8 31 29-61 13-44 (46)
58 2emi_A Zinc finger protein 484 21.8 39 0.0013 19.1 1.4 31 29-61 13-44 (46)
59 3rsn_A SET1/ASH2 histone methy 21.5 23 0.00079 29.1 0.4 19 118-136 94-112 (177)
60 3o7a_A PHD finger protein 13 v 21.5 23 0.00077 22.7 0.3 14 25-38 15-28 (52)
61 2emy_A Zinc finger protein 268 21.4 60 0.0021 18.3 2.2 31 29-61 13-44 (46)
62 2eoz_A Zinc finger protein 473 21.3 50 0.0017 18.7 1.8 31 29-61 13-44 (46)
63 2jmf_A E3 ubiquitin-protein li 21.2 82 0.0028 20.7 3.0 23 90-117 17-39 (53)
64 2ytd_A Zinc finger protein 473 21.1 55 0.0019 18.4 2.0 31 29-61 13-44 (46)
65 1wep_A PHF8; structural genomi 20.8 24 0.00083 24.4 0.4 36 25-71 24-63 (79)
66 2enf_A Zinc finger protein 347 20.7 35 0.0012 19.3 1.0 31 29-61 13-44 (46)
67 2yrj_A Zinc finger protein 473 20.7 36 0.0012 19.2 1.0 31 29-61 13-44 (46)
68 2eoq_A Zinc finger protein 224 20.2 45 0.0015 18.8 1.4 31 29-61 13-44 (46)
69 1wee_A PHD finger family prote 20.0 25 0.00086 23.9 0.3 14 26-39 29-42 (72)
70 2ytf_A Zinc finger protein 268 20.0 45 0.0015 18.8 1.4 31 29-61 13-44 (46)
No 1
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=99.94 E-value=2.9e-27 Score=189.54 Aligned_cols=113 Identities=29% Similarity=0.457 Sum_probs=89.4
Q ss_pred CCCcccCCcceeeecCCC----CCCCCCCceEEEEEcccC---CcceEEEECCCCCccccHHHHHHhhhhCCCCCCCCcC
Q 029286 71 PADIEYDASRVWVIDRPG----IPKTPGGFKRSLVLRKDF---SKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLS 143 (196)
Q Consensus 71 P~Di~~d~sr~W~iDkp~----iP~~P~GWkRevv~R~~g---sK~DVYY~SP~GKKlRSk~EV~ryL~~npe~~~l~le 143 (196)
|+.......|+.||+... .|.+|+||+|++++|++| +++|||||||+||+|||++||++||+.|+++ +|+++
T Consensus 13 ~~~~~~~~~rr~vi~~~~~~~~~~~LP~GWkRe~~~RksG~Sagk~DVYY~SP~GKkfRSk~Ev~ryL~~~~~~-~~~~e 91 (133)
T 1ub1_A 13 PEASASPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDT-SLDPN 91 (133)
T ss_dssp CCCCSCCCCCCCCCCTTSCSSCCCCBTTBCEEEEEECCCSSSCCSEEEEEECTTSCEESSHHHHHHHHTTSCCC-SCCGG
T ss_pred cccccCccCccceeeccccccCCCCCCCCCEEEEEEecCCCCCCceeEEEECCCCCeeeCHHHHHHHHHHCCcc-CCCHh
Confidence 444444566887886555 355799999999999998 5899999999999999999999999999997 89999
Q ss_pred CeeeeCCcccCCCCCCcccccCCCCccccCCCCccCCCC-CCCCcCCCCcc
Q 029286 144 DFTFSVPKVMDDTIPEDVVKKGSASSDAKRKPKTSKGVV-GDGTARDEGSV 193 (196)
Q Consensus 144 ~F~F~~pk~~~~~ip~~~~~k~~~~~~~~kk~~~~k~~~-g~~~~~~~~~~ 193 (196)
+|||++... .+++ ++.+ +..++.|+.+..+ |+|++|++||.
T Consensus 92 ~FdF~~~gk---~~~s----~R~~--r~~k~~k~~~~~~~~~~~~~~~~~~ 133 (133)
T 1ub1_A 92 DFDFTVTGR---GSPS----RREQ--RPPKKAKSPKSPGSGRGRGRPKGSG 133 (133)
T ss_dssp GCCCCCCCC---SCSS----CCCC--CCCCCCCCCCCCCCCCCCCCCCCCC
T ss_pred HCccccCCC---CCCc----cccc--CCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 999996422 2233 2333 4467778877777 99999999984
No 2
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=99.91 E-value=3.4e-25 Score=159.66 Aligned_cols=59 Identities=34% Similarity=0.565 Sum_probs=55.7
Q ss_pred CCCCCceEEEEEcccC---CcceEEEECCCCCccccHHHHHHhhhhCCCCCCCCcCCeeeeCC
Q 029286 91 KTPGGFKRSLVLRKDF---SKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSVP 150 (196)
Q Consensus 91 ~~P~GWkRevv~R~~g---sK~DVYY~SP~GKKlRSk~EV~ryL~~npe~~~l~le~F~F~~p 150 (196)
.+|+||+|++++|++| +|.||||+||+||||||++||++||+.||++ +|++++|||++|
T Consensus 5 plp~GW~R~~~~R~~G~s~gk~DvyY~sP~Gkk~RSk~ev~~yL~~~~~~-~l~~~~FdF~~p 66 (69)
T 3vxv_A 5 PVPCGWERVVKQRLSGKTAGKFDVYFISPQGLKFRSKRSLANYLLKNGET-FLKPEDFNFTVL 66 (69)
T ss_dssp CSCTTCEEEEEECCSSTTTTCEEEEEECTTSCEECSHHHHHHHHHHHCCC-CCCGGGSCCCCC
T ss_pred cCCCCCEEEEEEeccCCCCCcceEEEEcCCCCEeeCHHHHHHHHHhCCCC-CCCHHHcceeCC
Confidence 3599999999999987 4899999999999999999999999999998 899999999987
No 3
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A
Probab=99.91 E-value=6e-25 Score=168.07 Aligned_cols=65 Identities=31% Similarity=0.497 Sum_probs=58.7
Q ss_pred CCCCCCceEEEEEcccC---CcceEEEECCCCCccccHHHHHHhhhhCCCCCCCCcCCeeeeCCcccCC
Q 029286 90 PKTPGGFKRSLVLRKDF---SKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSVPKVMDD 155 (196)
Q Consensus 90 P~~P~GWkRevv~R~~g---sK~DVYY~SP~GKKlRSk~EV~ryL~~npe~~~l~le~F~F~~pk~~~~ 155 (196)
|.+|+||+|++++|++| +++|||||||+||+|||++||++||+.||++ +|++++|||++++++.+
T Consensus 22 ~~lP~GW~re~~~R~~G~s~gk~DvYY~sP~GkkfRSk~ev~ryL~~~g~~-~~~~~~FdF~~~~~~~~ 89 (97)
T 3c2i_A 22 PTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIMYFEKVGDT-SLDPNDFDFTVTGRGSP 89 (97)
T ss_dssp TTSCTTCEEEEEECCSSTTTTCEEEEEECTTSCEECSHHHHHHHHHHHTCC-SSCTTTCCCCSSCC---
T ss_pred CCCCCCCEEEEEEecCCCCCCcceEEEECCCCCEEECHHHHHHHHHHCCCC-CCCHhhccccCCCcCcc
Confidence 56799999999999997 5899999999999999999999999999998 89999999999988665
No 4
>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}
Probab=99.90 E-value=2e-24 Score=156.63 Aligned_cols=60 Identities=42% Similarity=0.712 Sum_probs=55.0
Q ss_pred CCCCCCCceEEEEEcccC---CcceEEEECCCCCccccHHHHHHhhhhCCCCCCCCcCCeeeeCCccc
Q 029286 89 IPKTPGGFKRSLVLRKDF---SKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSVPKVM 153 (196)
Q Consensus 89 iP~~P~GWkRevv~R~~g---sK~DVYY~SP~GKKlRSk~EV~ryL~~npe~~~l~le~F~F~~pk~~ 153 (196)
+|.+|+||+|++++|++| +++||||++|+|++|||++||++||.. +|++++|||.++++|
T Consensus 10 ~p~Lp~GW~R~~~~R~~g~s~~k~DvyY~sP~Gkr~RS~~ev~~YL~~-----~l~~~~FdF~~~~~~ 72 (72)
T 2ky8_A 10 CPALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLGN-----AVDLSCFDFRTGKMM 72 (72)
T ss_dssp CSSSCTTCEEEEEECCSSTTTTCEEEEEECTTCCEEESHHHHHHHHTT-----SSCCTTCBTTTTBC-
T ss_pred CCCCCCCCEEEEEEecCCCCCCceEEEEECCCCCEeEcHHHHHHHHhc-----CCChhhcCCCCCCcC
Confidence 456699999999999988 589999999999999999999999988 789999999999875
No 5
>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*
Probab=99.89 E-value=3.9e-24 Score=156.52 Aligned_cols=62 Identities=31% Similarity=0.512 Sum_probs=56.3
Q ss_pred CCCCCCCceEEEEEcccC---CcceEEEECCCCCccccHHHHHHhhhhCCCCCCCCcCCeeeeCCcccCC
Q 029286 89 IPKTPGGFKRSLVLRKDF---SKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSVPKVMDD 155 (196)
Q Consensus 89 iP~~P~GWkRevv~R~~g---sK~DVYY~SP~GKKlRSk~EV~ryL~~npe~~~l~le~F~F~~pk~~~~ 155 (196)
.|.+|+||+|++++|++| +++|||||||+||+|||++||++||+. ++++++|||++++++.-
T Consensus 8 ~p~LP~GW~Re~~~R~~g~s~gk~DvyY~sP~Gkk~RS~~ev~ryL~~-----~~~~~~FdF~~gk~~~~ 72 (75)
T 1d9n_A 8 CPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGP-----ACDLTLFDFKQGILCYP 72 (75)
T ss_dssp CTTTCSSCEEEECSSSSSCTTCCCCEEEECSSSCEECSTHHHHHHHCT-----TCCCTTCCTTTCCCCCS
T ss_pred CCCCCCCCEEEEEEecCCCCCCceEEEEECCCCCeeecHHHHHHHhcc-----CCCccccCCCCCCccCC
Confidence 345599999999999998 589999999999999999999999975 78999999999998654
No 6
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=98.52 E-value=2.6e-08 Score=76.38 Aligned_cols=49 Identities=22% Similarity=0.627 Sum_probs=39.3
Q ss_pred ccchhhhccccccceeeeccHHHHHHHHhhhcCCCeeeccCCC---CCcCCCCCcc
Q 029286 23 SIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPG---VSCEDPADIE 75 (196)
Q Consensus 23 ~i~~yavQC~~C~KwR~ipt~e~yEeir~~~~~~pf~C~~~~~---~sC~dP~Di~ 75 (196)
.++.+.|||.+|+|||.+| .+.++.+. ..+.|+|...++ .+|+.|+++.
T Consensus 23 ~~~~~WVQCD~C~KWRrLP-~~~~~~~~---~pd~W~C~mN~D~~~nsCs~PEE~~ 74 (100)
T 2l7p_A 23 STESAWVRCDDCFKWRRIP-ASVVGSID---ESSRWICMNNSDKRFADCSKSQEMS 74 (100)
T ss_dssp SSSSEEEECTTTCCEEEEC-HHHHTTST---TSSCCCGGGSSCSSSCSTTSCCSSC
T ss_pred CCCCeEEeeCCCCccccCC-hhHccccC---CCCCceeCCCCCCCCCCCCCccCCC
Confidence 4578899999999999999 44443332 359999999776 8999999985
No 7
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=97.80 E-value=6.4e-06 Score=59.14 Aligned_cols=50 Identities=20% Similarity=0.334 Sum_probs=38.2
Q ss_pred ccccchhhhccc--cccceeeeccHHHHHHHHhhhcCCCeeeccCC---CCCcCCCCCcc
Q 029286 21 IRSIDTYAAQCE--KCFKWRVINSSEEYEEIRCKIAEIPFVCDRKP---GVSCEDPADIE 75 (196)
Q Consensus 21 ~~~i~~yavQC~--~C~KwR~ipt~e~yEeir~~~~~~pf~C~~~~---~~sC~dP~Di~ 75 (196)
......+.|||. .|.|||.+|-.... ..+-+.|+|.-.+ -.+|+.|++..
T Consensus 11 ~~~~~~~WVQCd~p~C~KWR~LP~~~~~-----~~lpd~W~C~mN~d~~~~~Cs~pEE~~ 65 (69)
T 2e61_A 11 GFGQCLVWVQCSFPNCGKWRRLCGNIDP-----SVLPDNWSCDQNTDVQYNRCDIPEETW 65 (69)
T ss_dssp SCCCCCCEEECSSTTTCCEEECCSSCCT-----TTSCTTCCGGGCSCGGGCSSSSCCCCC
T ss_pred CCCCCCeEEEeCccccCcccCCcccccc-----ccCCCcCEeCCCCCCccCCCCCCcccC
Confidence 345568899999 99999999954322 2356899999755 46899999875
No 8
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=90.85 E-value=0.016 Score=55.97 Aligned_cols=62 Identities=29% Similarity=0.587 Sum_probs=39.8
Q ss_pred hhhhccc--cccceeeeccHHHHHHHHhhhcCCCeeeccCC--------CCCcCCCCCcccCC-cceeeecCCCCCC
Q 029286 26 TYAAQCE--KCFKWRVINSSEEYEEIRCKIAEIPFVCDRKP--------GVSCEDPADIEYDA-SRVWVIDRPGIPK 91 (196)
Q Consensus 26 ~yavQC~--~C~KwR~ipt~e~yEeir~~~~~~pf~C~~~~--------~~sC~dP~Di~~d~-sr~W~iDkp~iP~ 91 (196)
-|.+||. .|.|||.+|+. +.|-..+. +-|.|...+ +-.|..|+|.---. +..|-+-...+|+
T Consensus 91 ~~~~~c~~~~c~~~~~~~~~---~~~~~~~~-~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (776)
T 4gut_A 91 PYWVQCTKPECRKWRQLTKE---IQLTPQIA-KTYRCGMKPNTAIKPETSDHCSLPEDLRVLEVSNHWWYSMLILPP 163 (776)
T ss_dssp CCEEECCCTTTCCEEECCTT---CCCCHHHH-HHCCTTCCCC-------CCGGGSCCCHHHHHTTSTTTTTTCCSCC
T ss_pred cHhhhcCcccccchhhCCCc---CCCChhhh-heeeccCccCcccccccCCCCCCCcccchhhccchHHHHhhcCCH
Confidence 5889999 99999999744 33333332 348898754 44688899963222 4555555555543
No 9
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=76.35 E-value=2.4 Score=26.15 Aligned_cols=23 Identities=22% Similarity=0.528 Sum_probs=16.2
Q ss_pred CCCCCCCceEEEEEcccCCcceEEEECC
Q 029286 89 IPKTPGGFKRSLVLRKDFSKMDAYYITP 116 (196)
Q Consensus 89 iP~~P~GWkRevv~R~~gsK~DVYY~SP 116 (196)
...+|.||+..+- ....+||+.-
T Consensus 4 ~~~LP~gWe~~~~-----~~G~~Yy~nh 26 (38)
T 2law_A 4 EGPLPDGWEQAMT-----QDGEIYYINH 26 (38)
T ss_dssp -CCCSSSCCEEEE-----TTTEEEEEET
T ss_pred cCCCCCCcEEEEC-----CCCCEEEEEC
Confidence 3456999987644 3578999975
No 10
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=70.10 E-value=3.8 Score=32.38 Aligned_cols=41 Identities=12% Similarity=0.245 Sum_probs=30.5
Q ss_pred CCCCceEEEEEcccCCcceEEEECCCCCccc-------cHHHHHHhhhhCCC
Q 029286 92 TPGGFKRSLVLRKDFSKMDAYYITPTGKKLR-------TLNEVAGFLAANPE 136 (196)
Q Consensus 92 ~P~GWkRevv~R~~gsK~DVYY~SP~GKKlR-------Sk~EV~ryL~~npe 136 (196)
+|+||.. |.+-++...||+.+--+.++ |-.||.+|+..|..
T Consensus 8 lp~~w~~----~~s~s~~~~Yy~~~~~~~~~~~~~~~vs~~ei~~yy~~~~~ 55 (177)
T 1yw5_A 8 LPPNWTI----RVSRSHNKEYFLNQSTNESSWDPPYGTDKEVLNAYIAKFKN 55 (177)
T ss_dssp CCTTEEE----EECSSTTCEEEEETTTCCEESSCCTTCCHHHHHHHHHHHHH
T ss_pred CCchHHH----HhcccCCchhhhhHHHhhHhhcCcccCCHHHHHHHHHHhHh
Confidence 5999953 34456778999988655554 67899999999753
No 11
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=68.12 E-value=5.1 Score=24.01 Aligned_cols=23 Identities=26% Similarity=0.609 Sum_probs=16.1
Q ss_pred CCCCCCCceEEEEEcccCCcceEEEECC
Q 029286 89 IPKTPGGFKRSLVLRKDFSKMDAYYITP 116 (196)
Q Consensus 89 iP~~P~GWkRevv~R~~gsK~DVYY~SP 116 (196)
.+.+|.||+... + ....+||+.-
T Consensus 2 ~~~LP~GWe~~~----d-~~G~~Yy~n~ 24 (36)
T 1wr3_A 2 SPPLPPGWEEKV----D-NLGRTYYVNH 24 (36)
T ss_dssp CSCSCTTEEEEE----C-SSSCEEEEET
T ss_pred CCCCCCCCEEEE----C-CCCCEEEEEC
Confidence 356799997653 2 3578999875
No 12
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=66.65 E-value=3.6 Score=27.55 Aligned_cols=39 Identities=26% Similarity=0.486 Sum_probs=24.3
Q ss_pred CCCCCceEEEEEcccCCcceEEEECC-CCCc------cccHHHHHHhhhh
Q 029286 91 KTPGGFKRSLVLRKDFSKMDAYYITP-TGKK------LRTLNEVAGFLAA 133 (196)
Q Consensus 91 ~~P~GWkRevv~R~~gsK~DVYY~SP-~GKK------lRSk~EV~ryL~~ 133 (196)
.+|+||+ .|.+.+.+-+||+.. +|.. ..+..+|..|+.+
T Consensus 7 ~LP~GW~----~~~~~~~Gr~YY~N~~T~~sqWe~P~~~~~~~l~~~~~~ 52 (54)
T 2jv4_A 7 GLPAGWE----VRHSNSKNLPYYFNPATRESRWEPPADTDMETLKMYMAT 52 (54)
T ss_dssp CCCSSCC----EEECSSSSCEEEEETTTTEEESSCCTTSCHHHHHHHHCS
T ss_pred CCCCCcE----EEEECCCCCEEEEECCCCcEEecCCCCccHHHHHHHHHh
Confidence 3599997 344555678888874 3321 2356677777655
No 13
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=64.63 E-value=5.8 Score=25.96 Aligned_cols=27 Identities=11% Similarity=0.287 Sum_probs=17.9
Q ss_pred CCCCCCCCCceEEEEEcccCCcceEEEECCCC
Q 029286 87 PGIPKTPGGFKRSLVLRKDFSKMDAYYITPTG 118 (196)
Q Consensus 87 p~iP~~P~GWkRevv~R~~gsK~DVYY~SP~G 118 (196)
.....+|.||+..+ + ....+||+.-.-
T Consensus 7 ~~~~~LP~gWe~~~----~-~~Gr~Yy~nh~t 33 (50)
T 1i5h_W 7 NDLGPLPPGWEERT----H-TDGRVFFINHNI 33 (50)
T ss_dssp SCCSSCSTTEEEEE----C-TTSCEEEEETTT
T ss_pred ccCCCCCcCcEEEE----c-CCCCEEEEECCC
Confidence 34456799997653 2 456899997543
No 14
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A
Probab=61.15 E-value=8.8 Score=24.20 Aligned_cols=23 Identities=13% Similarity=0.275 Sum_probs=16.2
Q ss_pred CCCCCCCceEEEEEcccCCcceEEEECC
Q 029286 89 IPKTPGGFKRSLVLRKDFSKMDAYYITP 116 (196)
Q Consensus 89 iP~~P~GWkRevv~R~~gsK~DVYY~SP 116 (196)
...+|.||+..+ + ....+|||.-
T Consensus 5 ~~~LP~GWe~~~----~-~~G~~Yy~nh 27 (42)
T 2djy_A 5 SGPLPPGWEIRN----T-ATGRVYFVDH 27 (42)
T ss_dssp CSCCCSSEEEEE----C-SSSCEEEEET
T ss_pred cCCCCcCcEEEE----C-CCCCEEEEEC
Confidence 445699997653 2 4578999875
No 15
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=61.04 E-value=8.4 Score=23.84 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=15.7
Q ss_pred CCCCCCceEEEEEcccCCcceEEEECCC
Q 029286 90 PKTPGGFKRSLVLRKDFSKMDAYYITPT 117 (196)
Q Consensus 90 P~~P~GWkRevv~R~~gsK~DVYY~SP~ 117 (196)
..+|.||+..+ + ....+|||.-.
T Consensus 6 ~~LP~gWe~~~----~-~~Gr~Yy~nh~ 28 (40)
T 2ysg_A 6 SGLPYGWEEAY----T-ADGIKYFINHV 28 (40)
T ss_dssp SCCCTTEEEEE----C-SSSCEEEEESS
T ss_pred CCCCCCcEEEE----c-CCCCEEEEECC
Confidence 45699996553 2 45788998753
No 16
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Probab=60.70 E-value=5 Score=25.15 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=13.2
Q ss_pred CCCCCceEEEEEcccCCcceEEEECC
Q 029286 91 KTPGGFKRSLVLRKDFSKMDAYYITP 116 (196)
Q Consensus 91 ~~P~GWkRevv~R~~gsK~DVYY~SP 116 (196)
.+|.||++.+- . .. +||+.-
T Consensus 3 ~LP~GWe~~~d----~-~g-~YY~n~ 22 (38)
T 2ho2_A 3 DLPAGWMRVQD----T-SG-TYYWHI 22 (38)
T ss_dssp CSCTTEEEEEC----S-SC-EEEEET
T ss_pred cCCCCceEEEe----C-CC-CEEEec
Confidence 46999976543 1 23 899863
No 17
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=56.46 E-value=14 Score=22.48 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=16.7
Q ss_pred CCCCCCCceEEEEEcccCCcceEEEECCC
Q 029286 89 IPKTPGGFKRSLVLRKDFSKMDAYYITPT 117 (196)
Q Consensus 89 iP~~P~GWkRevv~R~~gsK~DVYY~SP~ 117 (196)
.+.+|.||+..+ + ..+.+||+.-.
T Consensus 4 ~~~LP~gWe~~~----d-~~G~~YY~n~~ 27 (39)
T 2kyk_A 4 MGPLPPGWERRV----D-NMGRIYYVDHF 27 (39)
T ss_dssp SCCCCSSCEEEE----C-TTSCEEEECSS
T ss_pred cCCCCCCcEEEE----c-CCCCEEEEECC
Confidence 456799997653 2 35789999854
No 18
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=51.31 E-value=14 Score=23.74 Aligned_cols=22 Identities=23% Similarity=0.593 Sum_probs=15.5
Q ss_pred CCCCCCceEEEEEcccCCcceEEEECC
Q 029286 90 PKTPGGFKRSLVLRKDFSKMDAYYITP 116 (196)
Q Consensus 90 P~~P~GWkRevv~R~~gsK~DVYY~SP 116 (196)
..+|.||+..+- ..+.+|||.-
T Consensus 10 ~~LP~gWe~~~~-----~~G~~Yyinh 31 (46)
T 2l4j_A 10 GPLPEGWEQAIT-----PEGEIYYINH 31 (46)
T ss_dssp SCCCTTCEEEEC-----TTSCEEEEET
T ss_pred CCCCcCceeEEC-----CCCCEEEEEC
Confidence 346999976632 3578999875
No 19
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=48.69 E-value=21 Score=23.30 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=15.5
Q ss_pred CCCCCCceEEEEEcccCCcceEEEECCC
Q 029286 90 PKTPGGFKRSLVLRKDFSKMDAYYITPT 117 (196)
Q Consensus 90 P~~P~GWkRevv~R~~gsK~DVYY~SP~ 117 (196)
+.+|.||+..+- ...-+||+.-.
T Consensus 12 ~~LP~GWe~~~d-----~~Gr~YYvnh~ 34 (49)
T 2zaj_A 12 LELPAGWEKIED-----PVYGIYYVDHI 34 (49)
T ss_dssp SCCCTTEEEEEE-----TTTEEEEEETT
T ss_pred CCCCcCceEEEc-----CCCCEEEEeCC
Confidence 456999976643 23568999753
No 20
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=48.41 E-value=17 Score=22.49 Aligned_cols=23 Identities=13% Similarity=0.352 Sum_probs=15.8
Q ss_pred CCCCCCceEEEEEcccCCcceEEEECCC
Q 029286 90 PKTPGGFKRSLVLRKDFSKMDAYYITPT 117 (196)
Q Consensus 90 P~~P~GWkRevv~R~~gsK~DVYY~SP~ 117 (196)
..+|.||+..+ + ....+||+.-.
T Consensus 6 ~~LP~gWe~~~----~-~~G~~Yy~nh~ 28 (40)
T 2ysf_A 6 SGLPEGWEMRF----T-VDGIPYFVDHN 28 (40)
T ss_dssp CCCCSSEEEEE----C-TTCCEEEEETT
T ss_pred CCCCcCcEEEE----c-CCCCEEEEECC
Confidence 45699997653 2 35788998753
No 21
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=47.99 E-value=12 Score=24.06 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=15.5
Q ss_pred CCCCCCCceEEEEEcccCCcceEEEECCC
Q 029286 89 IPKTPGGFKRSLVLRKDFSKMDAYYITPT 117 (196)
Q Consensus 89 iP~~P~GWkRevv~R~~gsK~DVYY~SP~ 117 (196)
.+.+|.||+..+- ..+.+||+.-.
T Consensus 10 ~~~LP~gWe~~~~-----~~G~~Yy~nh~ 33 (49)
T 2kpz_A 10 QGFLPKGWEVRHA-----PNGRPFFIDHN 33 (49)
T ss_dssp --CCCTTEEEEEC-----TTSCEEEEETT
T ss_pred CCCCCCCcEEEEC-----CCCCEEEEECC
Confidence 3456999976532 35789998753
No 22
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=47.29 E-value=19 Score=21.10 Aligned_cols=24 Identities=29% Similarity=0.660 Sum_probs=15.5
Q ss_pred CCCCCCceEEEEEcccCCcceEEEECCCC
Q 029286 90 PKTPGGFKRSLVLRKDFSKMDAYYITPTG 118 (196)
Q Consensus 90 P~~P~GWkRevv~R~~gsK~DVYY~SP~G 118 (196)
+.+|.||+... + ..+.+||+.-..
T Consensus 3 ~~LP~gWe~~~----d-~~g~~Yy~n~~t 26 (36)
T 1wr4_A 3 PGLPSGWEERK----D-AKGRTYYVNHNN 26 (36)
T ss_dssp TTCCTTEEEEE----C-SSSCEEEEETTT
T ss_pred CCCCCCCEEEE----C-CCCCEEEEECCC
Confidence 34699996542 2 256789987543
No 23
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Probab=45.97 E-value=10 Score=24.71 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=14.8
Q ss_pred CCCCceEEEEEcccCCcceEEEECCC
Q 029286 92 TPGGFKRSLVLRKDFSKMDAYYITPT 117 (196)
Q Consensus 92 ~P~GWkRevv~R~~gsK~DVYY~SP~ 117 (196)
+|.||+..+- ....+|||.-.
T Consensus 12 LP~gWe~~~~-----~~Gr~Yy~nh~ 32 (49)
T 2ysb_A 12 LPPGWSVDWT-----MRGRKYYIDHN 32 (49)
T ss_dssp CCTTEEEEEC-----SSSCEEEEETT
T ss_pred CCCCceEEEC-----CCCCEEEEEcC
Confidence 5999976643 25689999753
No 24
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=45.62 E-value=14 Score=22.86 Aligned_cols=22 Identities=14% Similarity=0.380 Sum_probs=15.4
Q ss_pred CCCCCCceEEEEEcccCCcceEEEECC
Q 029286 90 PKTPGGFKRSLVLRKDFSKMDAYYITP 116 (196)
Q Consensus 90 P~~P~GWkRevv~R~~gsK~DVYY~SP 116 (196)
+.+|.||+..+- ....+||+.-
T Consensus 7 ~~LP~gWe~~~~-----~~G~~Yy~n~ 28 (41)
T 1wr7_A 7 SFLPPGWEMRIA-----PNGRPFFIDH 28 (41)
T ss_dssp CSSCTTEEEEEC-----TTSCEEEEET
T ss_pred CCCCCCcEEEEc-----CCCCEEEEEC
Confidence 456999976542 2468999975
No 25
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}
Probab=45.03 E-value=11 Score=24.17 Aligned_cols=22 Identities=9% Similarity=0.288 Sum_probs=15.3
Q ss_pred CCCCCceEEEEEcccCCcceEEEECCC
Q 029286 91 KTPGGFKRSLVLRKDFSKMDAYYITPT 117 (196)
Q Consensus 91 ~~P~GWkRevv~R~~gsK~DVYY~SP~ 117 (196)
.+|.||+..+- ....+|||.-.
T Consensus 10 ~LP~gWe~~~~-----~~Gr~Yyinh~ 31 (46)
T 2ez5_W 10 PLPPRWSMQVA-----PNGRTFFIDHA 31 (46)
T ss_dssp CCCTTEEEEEC-----TTSSEEEEETT
T ss_pred CCCcCcEEEEc-----CCCCEEEEECC
Confidence 45999976532 25789998753
No 26
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=43.80 E-value=11 Score=26.91 Aligned_cols=33 Identities=33% Similarity=0.698 Sum_probs=23.3
Q ss_pred hcccccccee---eeccHHHHHHHHhhhc-CCCeeec
Q 029286 29 AQCEKCFKWR---VINSSEEYEEIRCKIA-EIPFVCD 61 (196)
Q Consensus 29 vQC~~C~KwR---~ipt~e~yEeir~~~~-~~pf~C~ 61 (196)
|||..|..|= -+--.++|.++-.++. +..|.|.
T Consensus 3 i~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~ 39 (140)
T 2ku7_A 3 MQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCV 39 (140)
T ss_dssp CCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSS
T ss_pred cccccCCCccCCcccccCHHHHHHHhhccccceeeCc
Confidence 7999999993 2333367777777765 4578886
No 27
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=42.88 E-value=13 Score=25.63 Aligned_cols=25 Identities=40% Similarity=0.709 Sum_probs=15.0
Q ss_pred CCCCCCceEEEEEcccCCcceEEEEC-CCCCc
Q 029286 90 PKTPGGFKRSLVLRKDFSKMDAYYIT-PTGKK 120 (196)
Q Consensus 90 P~~P~GWkRevv~R~~gsK~DVYY~S-P~GKK 120 (196)
+.+|+||++.. +.+. +||+. ++|..
T Consensus 18 ~~LPpGW~~~~----D~sG--tYY~h~~T~tT 43 (55)
T 2e45_A 18 SDLPAGWMRVQ----DTSG--TYYWHIPTGTT 43 (55)
T ss_dssp SCCCTTEEEEE----ETTE--EEEEETTTCCE
T ss_pred CCCCCCCeEee----cCCC--CEEEEcCCCCC
Confidence 45699996643 3333 77764 56654
No 28
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=42.84 E-value=26 Score=21.21 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=14.8
Q ss_pred CCCCCCceEEEEEcccCCcceEEEECC
Q 029286 90 PKTPGGFKRSLVLRKDFSKMDAYYITP 116 (196)
Q Consensus 90 P~~P~GWkRevv~R~~gsK~DVYY~SP 116 (196)
+.+|.||+...- ..+.+||+.-
T Consensus 6 ~~LP~gW~~~~d-----~~Gr~YY~n~ 27 (40)
T 2ysh_A 6 SGLPPGWQSYLS-----PQGRRYYVNT 27 (40)
T ss_dssp SSCCTTCEEEEC-----TTSCEEEECS
T ss_pred CCCCCCceEEEC-----CCCCEEEEEC
Confidence 456999954332 2467999985
No 29
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=41.65 E-value=18 Score=22.39 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=14.3
Q ss_pred CCCCCceEEEEEcccCCcceEEEECC
Q 029286 91 KTPGGFKRSLVLRKDFSKMDAYYITP 116 (196)
Q Consensus 91 ~~P~GWkRevv~R~~gsK~DVYY~SP 116 (196)
.+|.||+... + ..+.+||+.-
T Consensus 8 ~LP~gW~~~~----~-~~Gr~YY~n~ 28 (43)
T 1ymz_A 8 PLPPGWERRT----D-VEGKVYYFNV 28 (43)
T ss_dssp CCCSSEEEEE----C-TTSCEEEEET
T ss_pred CCCCCCEEEE----C-CCCCEEEEEC
Confidence 4589996543 2 2568999875
No 30
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=41.65 E-value=17 Score=24.45 Aligned_cols=24 Identities=13% Similarity=0.380 Sum_probs=16.2
Q ss_pred CCCCCCCceEEEEEcccCCcceEEEECCC
Q 029286 89 IPKTPGGFKRSLVLRKDFSKMDAYYITPT 117 (196)
Q Consensus 89 iP~~P~GWkRevv~R~~gsK~DVYY~SP~ 117 (196)
...+|.||+..+- ....+|||.-.
T Consensus 12 ~~~LP~GWe~~~~-----~~Gr~Yyinh~ 35 (57)
T 2ysd_A 12 LGPLPENWEMAYT-----ENGEVYFIDHN 35 (57)
T ss_dssp CCSCCSSEEEEEC-----SSCCEEEEETT
T ss_pred CCCCCcCcEEEEC-----CCCCEEEEECC
Confidence 3456999976532 35789998743
No 31
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.16 E-value=24 Score=21.93 Aligned_cols=22 Identities=18% Similarity=0.460 Sum_probs=15.5
Q ss_pred CCCCCCceEEEEEcccCCcceEEEECC
Q 029286 90 PKTPGGFKRSLVLRKDFSKMDAYYITP 116 (196)
Q Consensus 90 P~~P~GWkRevv~R~~gsK~DVYY~SP 116 (196)
+.+|.||+..+- ....+||+.-
T Consensus 6 ~~LP~GWe~~~d-----~~Gr~YY~n~ 27 (43)
T 2dmv_A 6 SGLPPGWEQRVD-----QHGRVYYVDH 27 (43)
T ss_dssp CSCCTTEEEEEC-----TTSCEEEEET
T ss_pred CCCCCCceEEEC-----CCCCEEEEEC
Confidence 456999976543 2578999875
No 32
>3tvt_B PINS, partner of inscuteable; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster}
Probab=40.53 E-value=15 Score=24.67 Aligned_cols=25 Identities=32% Similarity=0.598 Sum_probs=19.3
Q ss_pred EEEEEcccC-CcceEEEECCCCCccc
Q 029286 98 RSLVLRKDF-SKMDAYYITPTGKKLR 122 (196)
Q Consensus 98 Revv~R~~g-sK~DVYY~SP~GKKlR 122 (196)
|-+++|+-. ...|..-|+|+||+|-
T Consensus 18 rmvrvrrqsmeqldlikitpdgkrlq 43 (50)
T 3tvt_B 18 RMVRVRRQDMEQLDLIKITPDGKRMQ 43 (50)
T ss_pred eEEEeeecchhhcCeEEecCCchhhh
Confidence 556666544 5799999999999974
No 33
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}
Probab=40.03 E-value=18 Score=23.99 Aligned_cols=25 Identities=8% Similarity=0.266 Sum_probs=16.7
Q ss_pred CCCCCCCceEEEEEcccCCcceEEEECCCC
Q 029286 89 IPKTPGGFKRSLVLRKDFSKMDAYYITPTG 118 (196)
Q Consensus 89 iP~~P~GWkRevv~R~~gsK~DVYY~SP~G 118 (196)
...+|.||+..+- ....+|||.-.-
T Consensus 9 ~~~LP~GWe~~~~-----~~G~~Yyinh~t 33 (54)
T 1wmv_A 9 AGDLPYGWEQETD-----ENGQVFFVDHIN 33 (54)
T ss_dssp SSCSCTTEEEEEC-----TTSCEEEEESSS
T ss_pred CCCCCcCcEEEEC-----CCCCEEEEeCCC
Confidence 3456999975532 357899997543
No 34
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=39.64 E-value=16 Score=21.72 Aligned_cols=21 Identities=19% Similarity=0.369 Sum_probs=14.0
Q ss_pred CCCCCceEEEEEcccCCcceEEEECC
Q 029286 91 KTPGGFKRSLVLRKDFSKMDAYYITP 116 (196)
Q Consensus 91 ~~P~GWkRevv~R~~gsK~DVYY~SP 116 (196)
.+|.||+..+ + ..+.+||+.-
T Consensus 3 ~LP~gW~~~~----~-~~G~~Yy~n~ 23 (37)
T 1e0m_A 3 GLPPGWDEYK----T-HNGKTYYYNH 23 (37)
T ss_dssp CSCTTEEEEE----C-SSCCEEEEET
T ss_pred CCCCCcEEEE----C-CCCCEEEEEC
Confidence 3599997542 2 2467899874
No 35
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=37.16 E-value=41 Score=21.78 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=15.1
Q ss_pred CCCCCCceEEEEEcccCCcceEEEECCC
Q 029286 90 PKTPGGFKRSLVLRKDFSKMDAYYITPT 117 (196)
Q Consensus 90 P~~P~GWkRevv~R~~gsK~DVYY~SP~ 117 (196)
+.+|.||+...- ...-+||+.-.
T Consensus 12 ~~LP~GWe~~~d-----~~g~~YYvnh~ 34 (49)
T 2dwv_A 12 EGLPPGWERVES-----SEFGTYYVDHT 34 (49)
T ss_dssp SCCCTTEEEEEE-----TTTEEEEEETT
T ss_pred CCCCcCcEEEEC-----CCCCEEEEECC
Confidence 456999976532 23469999753
No 36
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=33.51 E-value=37 Score=24.01 Aligned_cols=23 Identities=17% Similarity=0.554 Sum_probs=15.4
Q ss_pred CCCCCCCceEEEEEcccCCcceEEEECC
Q 029286 89 IPKTPGGFKRSLVLRKDFSKMDAYYITP 116 (196)
Q Consensus 89 iP~~P~GWkRevv~R~~gsK~DVYY~SP 116 (196)
...+|.||+..+- ..+-+|||.-
T Consensus 10 ~~~LP~gWe~~~~-----~~Gr~Yy~n~ 32 (88)
T 1tk7_A 10 LGPLPDGWEKKIQ-----SDNRVYFVNH 32 (88)
T ss_dssp TSSSSSSCCEEEE-----TTTEEEEEET
T ss_pred cCCCCCCcEEEEC-----CCCCEEEEEC
Confidence 3456999976543 3467899853
No 37
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.38 E-value=23 Score=20.36 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=19.6
Q ss_pred hccccccceeeeccHHHHH-HHHhhhcCCCeeec
Q 029286 29 AQCEKCFKWRVINSSEEYE-EIRCKIAEIPFVCD 61 (196)
Q Consensus 29 vQC~~C~KwR~ipt~e~yE-eir~~~~~~pf~C~ 61 (196)
-+|..|.|.=. ++..+. -+|.+..+.||.|+
T Consensus 13 ~~C~~C~k~F~--~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2eom_A 13 HRCSDCGKFFL--QASNFIQHRRIHTGEKPSGPS 44 (46)
T ss_dssp CCCSSSCCCCS--SHHHHHHHHHHHSSCCCSSCC
T ss_pred cCCCCCCCeeC--ChHHHHHHHHHhCCCCCCCCC
Confidence 46888876432 233322 25667889999996
No 38
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=30.31 E-value=29 Score=21.66 Aligned_cols=9 Identities=22% Similarity=0.645 Sum_probs=6.9
Q ss_pred CCCCCceEE
Q 029286 91 KTPGGFKRS 99 (196)
Q Consensus 91 ~~P~GWkRe 99 (196)
.+|+||+..
T Consensus 8 ~LP~GWe~~ 16 (39)
T 2ysc_A 8 GLPPGWRKI 16 (39)
T ss_dssp CCCTTEEEE
T ss_pred CCCCCcEEE
Confidence 469999765
No 39
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.36 E-value=30 Score=19.52 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=19.8
Q ss_pred hccccccceeeeccHHHHH-HHHhhhcCCCeeec
Q 029286 29 AQCEKCFKWRVINSSEEYE-EIRCKIAEIPFVCD 61 (196)
Q Consensus 29 vQC~~C~KwR~ipt~e~yE-eir~~~~~~pf~C~ 61 (196)
.+|..|.|.=. ++..+. -+|.+..+.||.|+
T Consensus 13 ~~C~~C~k~f~--~~~~L~~H~~~H~~~kp~~C~ 44 (46)
T 2eor_A 13 YNCEECGKAFI--HDSQLQEHQRIHTGEKPSGPS 44 (46)
T ss_dssp EECTTTCCEES--SHHHHHHHHHHHHSCCCSSST
T ss_pred ccCCCCCCCcC--CHHHHHHHHHhcCCCCCCCCC
Confidence 46888876533 233332 35667789999996
No 40
>2l3a_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Streptococcus pneumoniae} PDB: 3obh_A*
Probab=28.14 E-value=55 Score=24.17 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=30.8
Q ss_pred CCCCCceEEEEEcccCC---cceEEEECCCCCccc-----cHHHHHH
Q 029286 91 KTPGGFKRSLVLRKDFS---KMDAYYITPTGKKLR-----TLNEVAG 129 (196)
Q Consensus 91 ~~P~GWkRevv~R~~gs---K~DVYY~SP~GKKlR-----Sk~EV~r 129 (196)
..+.||.+||-+-+.++ |.|+-=.+|+..|+- +..|+..
T Consensus 20 e~~kGW~KELNlVSWNg~~pKyDIR~Wspdh~kMGKGITLT~eE~~~ 66 (82)
T 2l3a_A 20 ENEKGWTKEINRVSFNGAPAKFDIRAWSPDHTKMGKGITLSNEEFQT 66 (82)
T ss_dssp EETTTEEEEEEEEEESSSCEEEEEEEECSTTCCCCCCEEECHHHHHH
T ss_pred cCCCCceEEEEEEeECCCCCCccccccCcchhhccCcccccHHHHHH
Confidence 34899999999998875 799999999877663 5555544
No 41
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=27.73 E-value=53 Score=23.25 Aligned_cols=23 Identities=13% Similarity=0.472 Sum_probs=15.4
Q ss_pred CCCCCceEEEEEcccCCcceEEEECCCC
Q 029286 91 KTPGGFKRSLVLRKDFSKMDAYYITPTG 118 (196)
Q Consensus 91 ~~P~GWkRevv~R~~gsK~DVYY~SP~G 118 (196)
.+|.||...+- ..+.+|||...-
T Consensus 9 ~LP~gWe~~~~-----~~Gr~YY~n~~t 31 (90)
T 2kxq_A 9 DLPEGYEQRTT-----QQGQVYFLHTQT 31 (90)
T ss_dssp SCCSSCEEEEE-----TTTEEEEEETTT
T ss_pred CCCCCcEEEEC-----CCCCEEEEECCC
Confidence 46999965443 256799997533
No 42
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=25.93 E-value=38 Score=26.68 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=14.5
Q ss_pred CCCCCceEEEEEcccCCcceEEEECC
Q 029286 91 KTPGGFKRSLVLRKDFSKMDAYYITP 116 (196)
Q Consensus 91 ~~P~GWkRevv~R~~gsK~DVYY~SP 116 (196)
.+|+||+. |.+-+..-+||+..
T Consensus 9 ~LP~gWe~----~~~~~~g~~yy~n~ 30 (166)
T 3tc5_A 9 KLPPGWEK----AMSRSSGRVYYFNH 30 (166)
T ss_dssp -CCTTEEE----EECTTTCCEEEEET
T ss_pred CCCCCceE----EEcCCCCCEEEEEC
Confidence 46999953 33435678899874
No 43
>2v0f_A Chromodomain-helicase-DNA-binding protein 7; nucleotide-binding, chromatin regulator, charge syndrome, phosphorylation, disease mutation; NMR {Homo sapiens} SCOP: d.76.2.1
Probab=25.71 E-value=27 Score=25.87 Aligned_cols=21 Identities=24% Similarity=0.585 Sum_probs=18.0
Q ss_pred CCCccccHHHHHHhhhhCCCC
Q 029286 117 TGKKLRTLNEVAGFLAANPEY 137 (196)
Q Consensus 117 ~GKKlRSk~EV~ryL~~npe~ 137 (196)
.|.+.=...+|.+||..||.|
T Consensus 31 ~G~~AP~l~~L~~WL~~nP~y 51 (87)
T 2v0f_A 31 GGAMAPPMKDLPRWLEENPEF 51 (87)
T ss_dssp CSSSSCBGGGHHHHHHHCTTE
T ss_pred cCCcCchhHHHHHHHHHCCCc
Confidence 356677889999999999999
No 44
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.33 E-value=67 Score=18.06 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=19.8
Q ss_pred hccccccceeeeccHHHHH-HHHhhhcCCCeeec
Q 029286 29 AQCEKCFKWRVINSSEEYE-EIRCKIAEIPFVCD 61 (196)
Q Consensus 29 vQC~~C~KwR~ipt~e~yE-eir~~~~~~pf~C~ 61 (196)
-+|..|.|.= .++..+. -+|.+..+.||.|+
T Consensus 13 ~~C~~C~k~f--~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2ytk_A 13 YKCNECGKVF--TQNSHLTNHWRIHTGEKPSGPS 44 (46)
T ss_dssp EECSSSCCEE--SSHHHHHHHHHHHSSSSCSSCC
T ss_pred EeCCcCCCcc--CCHHHHHHHHHHHCCCCCCCCC
Confidence 4688887643 2333332 25567789999997
No 45
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.74 E-value=70 Score=21.77 Aligned_cols=25 Identities=20% Similarity=0.505 Sum_probs=16.6
Q ss_pred CCCCCCceEEEEEcccCCcceEEEECCCCC
Q 029286 90 PKTPGGFKRSLVLRKDFSKMDAYYITPTGK 119 (196)
Q Consensus 90 P~~P~GWkRevv~R~~gsK~DVYY~SP~GK 119 (196)
..+|.||+..+ + ...-+||+.-.-+
T Consensus 12 ~~LP~GWE~~~----d-~~Gr~YYvnh~tk 36 (60)
T 2yse_A 12 LELPAGWEKIE----D-PVYGIYYVDHINR 36 (60)
T ss_dssp SSCCSSEEEEE----C-SSSCEEEEETTTT
T ss_pred CCCCCCcEEEE----C-CCCCEEEEeCCCC
Confidence 45699997653 2 3467999986443
No 46
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=24.73 E-value=50 Score=24.39 Aligned_cols=31 Identities=13% Similarity=0.279 Sum_probs=21.4
Q ss_pred ceEEEECCCCCccccHHHHHHhhhhCCCCCCCCcCCe
Q 029286 109 MDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDF 145 (196)
Q Consensus 109 ~DVYY~SP~GKKlRSk~EV~ryL~~npe~~~l~le~F 145 (196)
-|....--|||+|.++. ++|..+- +|+.+.+
T Consensus 19 ~d~iiClecGK~fK~Lk---RHL~~~h---gltpeeY 49 (87)
T 2jsp_A 19 DDHIVCLECGGSFKSLK---RHLTTHH---SMTPEEY 49 (87)
T ss_dssp SSCEECTBTCCEESBHH---HHHHHTT---CSCHHHH
T ss_pred CCceEecccchhhHHHH---HHHHHcc---CCCHHHH
Confidence 44444446999999855 9999831 6677665
No 47
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.48 E-value=37 Score=19.13 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=20.3
Q ss_pred hccccccceeeeccHHHHH-HHHhhhcCCCeeec
Q 029286 29 AQCEKCFKWRVINSSEEYE-EIRCKIAEIPFVCD 61 (196)
Q Consensus 29 vQC~~C~KwR~ipt~e~yE-eir~~~~~~pf~C~ 61 (196)
.+|..|.|.= .++..+. -+|.+..+.||.|.
T Consensus 13 ~~C~~C~k~f--~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2eow_A 13 YKCNECGKAF--RARSSLAIHQATHSGEKPSGPS 44 (46)
T ss_dssp EECTTSCCEE--SSHHHHHHHHHHHCCCSCSCTT
T ss_pred eeccccCChh--cCHHHHHHHHHHcCCCCCCCCC
Confidence 4788887753 3333332 35667889999996
No 48
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.28 E-value=41 Score=19.10 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=19.5
Q ss_pred hccccccceeeeccHHHHH-HHHhhhcCCCeeec
Q 029286 29 AQCEKCFKWRVINSSEEYE-EIRCKIAEIPFVCD 61 (196)
Q Consensus 29 vQC~~C~KwR~ipt~e~yE-eir~~~~~~pf~C~ 61 (196)
-+|..|.|.=. ++..+. -+|.+..+.||.|+
T Consensus 13 ~~C~~C~k~F~--~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2en9_A 13 FKCNECKKTFT--QSSSLTVHQRIHTGEKPSGPS 44 (46)
T ss_dssp CBCTTTCCBCS--SHHHHHHHHHHHTSSCCCSCC
T ss_pred EECCccCcccC--CHHHHHHHHHHcCCCCCCCCC
Confidence 46888876432 333332 25667789999997
No 49
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=24.07 E-value=41 Score=20.07 Aligned_cols=17 Identities=24% Similarity=0.569 Sum_probs=15.7
Q ss_pred CCCccccHHHHHHhhhh
Q 029286 117 TGKKLRTLNEVAGFLAA 133 (196)
Q Consensus 117 ~GKKlRSk~EV~ryL~~ 133 (196)
.|+.||.-.||..|+++
T Consensus 8 kgrtfrnekelrdfiek 24 (28)
T 1fme_A 8 KGRTFRNEKELRDFIEK 24 (28)
T ss_dssp SSCEECCHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHH
Confidence 68999999999999987
No 50
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.73 E-value=28 Score=19.86 Aligned_cols=31 Identities=19% Similarity=0.169 Sum_probs=18.9
Q ss_pred hccccccceeeeccHHHHH-HHHhhhcCCCeeec
Q 029286 29 AQCEKCFKWRVINSSEEYE-EIRCKIAEIPFVCD 61 (196)
Q Consensus 29 vQC~~C~KwR~ipt~e~yE-eir~~~~~~pf~C~ 61 (196)
-+|..|.|.=. ++..+. -+|.+..+.||.|+
T Consensus 13 ~~C~~C~k~F~--~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2ytp_A 13 YECSECGKAFA--RKSTLIMHQRIHTGEKPSGPS 44 (46)
T ss_dssp EECSSSCCEES--SHHHHHHHHTTTSCCCCCSSC
T ss_pred eECCcCCcccC--CHHHHHHHHHHhCCCCCCCCC
Confidence 46888876532 223222 24556788999996
No 51
>3lv0_A Extragenic suppressor protein SUHB; niaid, seattle structural genomics center for infectious disease, ssgcid, CAT scratch disease; 1.85A {Bartonella henselae} SCOP: e.7.1.0 PDB: 3luz_A
Probab=22.91 E-value=58 Score=26.97 Aligned_cols=35 Identities=14% Similarity=0.352 Sum_probs=23.6
Q ss_pred HHHHHhhhcCCCeeeccCCCCCcCCCCCcccCCcceeeecCC
Q 029286 46 YEEIRCKIAEIPFVCDRKPGVSCEDPADIEYDASRVWVIDRP 87 (196)
Q Consensus 46 yEeir~~~~~~pf~C~~~~~~sC~dP~Di~~d~sr~W~iDkp 87 (196)
.+.|++.+.+.+|.-|-.... ...++.++|+||+-
T Consensus 58 ~~~L~~~~P~~~ilgEE~~~~-------~~~~~~~~WiIDPI 92 (267)
T 3lv0_A 58 FNELSKARPKFGFLMEESEEI-------IGEDSQHRFIVDPL 92 (267)
T ss_dssp HHHHHHHCTTSEEEETTSCCB-------CCSSTTEEEEEEEE
T ss_pred HHHHHHHCCCCEEEeCCCCCC-------CCCCCCCEEEEecC
Confidence 467888888899988843211 12345789999973
No 52
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=22.70 E-value=48 Score=18.78 Aligned_cols=31 Identities=23% Similarity=0.210 Sum_probs=19.6
Q ss_pred hccccccceeeeccHHHHH-HHHhhhcCCCeeec
Q 029286 29 AQCEKCFKWRVINSSEEYE-EIRCKIAEIPFVCD 61 (196)
Q Consensus 29 vQC~~C~KwR~ipt~e~yE-eir~~~~~~pf~C~ 61 (196)
-+|..|.|.=. ++..+. =+|.+..+.||.|.
T Consensus 13 ~~C~~C~k~F~--~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2emj_A 13 FECAECGKSFS--ISSQLATHQRIHTGEKPSGPS 44 (46)
T ss_dssp EECSSSSCEES--SHHHHHHHHHHHTTSCSSSSC
T ss_pred EECCCCCcccC--CHHHHHHHHHHhCCCCCCCCC
Confidence 46888876533 233322 35667789999996
No 53
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.55 E-value=48 Score=18.78 Aligned_cols=31 Identities=19% Similarity=0.147 Sum_probs=19.6
Q ss_pred hccccccceeeeccHHHHH-HHHhhhcCCCeeec
Q 029286 29 AQCEKCFKWRVINSSEEYE-EIRCKIAEIPFVCD 61 (196)
Q Consensus 29 vQC~~C~KwR~ipt~e~yE-eir~~~~~~pf~C~ 61 (196)
-+|..|.|.=. ++..+. -+|.+..+.||.|.
T Consensus 13 ~~C~~C~k~f~--~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2em4_A 13 YECIECGKAFK--TKSSLICHRRSHTGEKPSGPS 44 (46)
T ss_dssp EECSSSCCEES--SHHHHHHHHHHHSSSSCCCCC
T ss_pred cCCCCCCCccC--CHHHHHHHHHhcCCCCCCCCC
Confidence 46888876533 233322 25667789999996
No 54
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.42 E-value=47 Score=18.38 Aligned_cols=31 Identities=16% Similarity=0.171 Sum_probs=19.2
Q ss_pred hccccccceeeeccHHHHH-HHHhhhcCCCeeec
Q 029286 29 AQCEKCFKWRVINSSEEYE-EIRCKIAEIPFVCD 61 (196)
Q Consensus 29 vQC~~C~KwR~ipt~e~yE-eir~~~~~~pf~C~ 61 (196)
.+|..|.|.=. ++..+. -++.+..+.||.|+
T Consensus 13 ~~C~~C~k~f~--~~~~L~~H~~~H~~~~~~~C~ 44 (44)
T 2eof_A 13 YECNECQKAFN--TKSNLMVHQRTHTGESGPSSG 44 (44)
T ss_dssp EECTTTCCEES--CHHHHHHHHHHTTTSSCSCCC
T ss_pred eECCCCCcccC--CHhHHHHHHHHhCCCCCCCCC
Confidence 47888877532 333332 24567788999984
No 55
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.40 E-value=41 Score=19.08 Aligned_cols=31 Identities=13% Similarity=0.066 Sum_probs=19.8
Q ss_pred hccccccceeeeccHHHHH-HHHhhhcCCCeeec
Q 029286 29 AQCEKCFKWRVINSSEEYE-EIRCKIAEIPFVCD 61 (196)
Q Consensus 29 vQC~~C~KwR~ipt~e~yE-eir~~~~~~pf~C~ 61 (196)
.+|..|.|.=. ++..+. -++.+..+.||.|+
T Consensus 13 ~~C~~C~k~f~--~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2yto_A 13 YKCSDCGKAFT--RKSGLHIHQQSHTGERHSGPS 44 (46)
T ss_dssp EECSSSCCEES--SHHHHHHHHHHHTCCCBTTTB
T ss_pred EECcccCCccC--CHhHHHHHHHHcCCCCCCCCC
Confidence 47888877532 233332 25667789999997
No 56
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.29 E-value=39 Score=19.18 Aligned_cols=31 Identities=16% Similarity=0.147 Sum_probs=19.7
Q ss_pred hccccccceeeeccHHHHH-HHHhhhcCCCeeec
Q 029286 29 AQCEKCFKWRVINSSEEYE-EIRCKIAEIPFVCD 61 (196)
Q Consensus 29 vQC~~C~KwR~ipt~e~yE-eir~~~~~~pf~C~ 61 (196)
-+|..|.|.= .++..+. -+|.+..+.||.|.
T Consensus 13 ~~C~~C~k~f--~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2emz_A 13 FKCNECGKGF--GRRSHLAGHLRLHSREKSSGPS 44 (46)
T ss_dssp CCCSSSCCCC--SSHHHHHHHHHHHHHTTCCCSC
T ss_pred eECCCCCccc--CCHHHHHHHHHHhCCCCCCCCC
Confidence 4688887643 2333332 35667789999997
No 57
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.29 E-value=28 Score=19.82 Aligned_cols=31 Identities=23% Similarity=0.234 Sum_probs=19.2
Q ss_pred hccccccceeeeccHHHHH-HHHhhhcCCCeeec
Q 029286 29 AQCEKCFKWRVINSSEEYE-EIRCKIAEIPFVCD 61 (196)
Q Consensus 29 vQC~~C~KwR~ipt~e~yE-eir~~~~~~pf~C~ 61 (196)
-+|..|.|.=. ++..+. -++.+..+.||.|+
T Consensus 13 ~~C~~C~k~f~--~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2em6_A 13 YKCDVCGKEFS--QSSHLQTHQRVHTGEKPSGPS 44 (46)
T ss_dssp CBCSSSCCBCS--SHHHHHHHHTTTSSSCCCCTT
T ss_pred eECCCCCcccC--CHHHHHHHHHHcCCCCCCCCC
Confidence 46888877532 233322 24556778999996
No 58
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.77 E-value=39 Score=19.10 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=18.7
Q ss_pred hccccccceeeeccHHHHH-HHHhhhcCCCeeec
Q 029286 29 AQCEKCFKWRVINSSEEYE-EIRCKIAEIPFVCD 61 (196)
Q Consensus 29 vQC~~C~KwR~ipt~e~yE-eir~~~~~~pf~C~ 61 (196)
-+|..|.|.=. ++..+. =+|.+..+.||.|.
T Consensus 13 ~~C~~C~k~F~--~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2emi_A 13 YECSECGKAFI--QKSTLSMHQRIHRGEKPSGPS 44 (46)
T ss_dssp EECSSSCCEES--SHHHHHHHHGGGCSCCCCSCC
T ss_pred CCCCCCCcccC--CHHHHHHHHhHhCCCCCCCCC
Confidence 46888876432 223222 24556778999996
No 59
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=21.53 E-value=23 Score=29.14 Aligned_cols=19 Identities=11% Similarity=0.107 Sum_probs=15.0
Q ss_pred CCccccHHHHHHhhhhCCC
Q 029286 118 GKKLRTLNEVAGFLAANPE 136 (196)
Q Consensus 118 GKKlRSk~EV~ryL~~npe 136 (196)
-+-|+-..||..|+++|=+
T Consensus 94 k~yF~~~~dIipfI~~nWe 112 (177)
T 3rsn_A 94 KTMFSKDKDIIPFIDKYWE 112 (177)
T ss_dssp CSCEETTTTHHHHHHHTGG
T ss_pred cccccccchHHHHHHHHHH
Confidence 4567777899999999754
No 60
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=21.48 E-value=23 Score=22.74 Aligned_cols=14 Identities=21% Similarity=0.807 Sum_probs=12.1
Q ss_pred chhhhcccccccee
Q 029286 25 DTYAAQCEKCFKWR 38 (196)
Q Consensus 25 ~~yavQC~~C~KwR 38 (196)
+..-+||..|..|-
T Consensus 15 ~~~MI~Cd~C~~W~ 28 (52)
T 3o7a_A 15 GRPMIECNECHTWI 28 (52)
T ss_dssp TCCEEECTTTCCEE
T ss_pred CCCEEEcCCCCccc
Confidence 56789999999994
No 61
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.41 E-value=60 Score=18.26 Aligned_cols=31 Identities=19% Similarity=0.159 Sum_probs=19.9
Q ss_pred hccccccceeeeccHHHH-HHHHhhhcCCCeeec
Q 029286 29 AQCEKCFKWRVINSSEEY-EEIRCKIAEIPFVCD 61 (196)
Q Consensus 29 vQC~~C~KwR~ipt~e~y-Eeir~~~~~~pf~C~ 61 (196)
-+|..|.|.=.- +..+ .-++.+..+.||.|.
T Consensus 13 ~~C~~C~k~F~~--~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2emy_A 13 YECHECGKAFSR--KYQLISHQRTHAGEKPSGPS 44 (46)
T ss_dssp EECSSSCCEESS--HHHHHHHHHHHTTSCCSCSS
T ss_pred cCCCCCCcccCc--HHHHHHHHHHcCCCCCCCCC
Confidence 468888775332 2322 235667889999997
No 62
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.32 E-value=50 Score=18.71 Aligned_cols=31 Identities=23% Similarity=0.173 Sum_probs=19.3
Q ss_pred hccccccceeeeccHHHHH-HHHhhhcCCCeeec
Q 029286 29 AQCEKCFKWRVINSSEEYE-EIRCKIAEIPFVCD 61 (196)
Q Consensus 29 vQC~~C~KwR~ipt~e~yE-eir~~~~~~pf~C~ 61 (196)
-+|..|.|.=. ++..+. -+|.+..+.||.|.
T Consensus 13 ~~C~~C~k~f~--~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2eoz_A 13 YSCNVCGKAFV--LSAHLNQHLRVHTQETLSGPS 44 (46)
T ss_dssp EEETTTTEEES--SHHHHHHHHHHHSSCCSSSCC
T ss_pred eECcccChhhC--CHHHHHHHHHHhCCCCCCCCC
Confidence 46888876433 233222 25567788999996
No 63
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Probab=21.19 E-value=82 Score=20.68 Aligned_cols=23 Identities=9% Similarity=0.339 Sum_probs=15.6
Q ss_pred CCCCCCceEEEEEcccCCcceEEEECCC
Q 029286 90 PKTPGGFKRSLVLRKDFSKMDAYYITPT 117 (196)
Q Consensus 90 P~~P~GWkRevv~R~~gsK~DVYY~SP~ 117 (196)
..+|.||+..+ + ..+.+||+.-.
T Consensus 17 ~~LP~GWe~~~----~-~~Gr~Yyinh~ 39 (53)
T 2jmf_A 17 GPLPPGWEIRY----T-AAGERFFVDHN 39 (53)
T ss_dssp SCCCTTEEEEE----C-TTSCEEEEETT
T ss_pred CCCCcCcEEEE----c-CCCCEEEEeCC
Confidence 34699997553 2 35788998753
No 64
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.14 E-value=55 Score=18.43 Aligned_cols=31 Identities=19% Similarity=0.134 Sum_probs=19.6
Q ss_pred hccccccceeeeccHHHH-HHHHhhhcCCCeeec
Q 029286 29 AQCEKCFKWRVINSSEEY-EEIRCKIAEIPFVCD 61 (196)
Q Consensus 29 vQC~~C~KwR~ipt~e~y-Eeir~~~~~~pf~C~ 61 (196)
-+|..|.|.=. ++..+ .=+|.+..+.||.|.
T Consensus 13 ~~C~~C~k~f~--~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2ytd_A 13 YKCSECGKAFH--RHTHLNEHRRIHTGYRPSGPS 44 (46)
T ss_dssp EECSSSCCEES--SHHHHHHHHHHHTCCCSSCSS
T ss_pred eECCCCCCeeC--ChHHHHHHHHHcCCCCCCCCC
Confidence 46888876432 23322 235667789999997
No 65
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=20.80 E-value=24 Score=24.36 Aligned_cols=36 Identities=19% Similarity=0.505 Sum_probs=22.2
Q ss_pred chhhhccccccceeeec----cHHHHHHHHhhhcCCCeeeccCCCCCcCCC
Q 029286 25 DTYAAQCEKCFKWRVIN----SSEEYEEIRCKIAEIPFVCDRKPGVSCEDP 71 (196)
Q Consensus 25 ~~yavQC~~C~KwR~ip----t~e~yEeir~~~~~~pf~C~~~~~~sC~dP 71 (196)
+...|||..|..|=-.. +.++. ..-+.|+|. .|...
T Consensus 24 ~~~MIqCd~C~~WfH~~Cvgl~~~~~------~~~~~~~C~-----~C~~~ 63 (79)
T 1wep_A 24 NHFMIECGLCQDWFHGSCVGIEEENA------VDIDIYHCP-----DCEAV 63 (79)
T ss_dssp SSCEEEBTTTCCEEEHHHHTCCHHHH------TTCSBBCCT-----TTTTT
T ss_pred CCceEEcCCCCCcEEeeecCcccccc------cCCCeEECC-----Ccccc
Confidence 46679999999994321 12211 113689998 66543
No 66
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.70 E-value=35 Score=19.33 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=19.0
Q ss_pred hccccccceeeeccHHHHH-HHHhhhcCCCeeec
Q 029286 29 AQCEKCFKWRVINSSEEYE-EIRCKIAEIPFVCD 61 (196)
Q Consensus 29 vQC~~C~KwR~ipt~e~yE-eir~~~~~~pf~C~ 61 (196)
-+|..|.|.=. ++..+. =+|.+..+.||.|.
T Consensus 13 ~~C~~C~k~F~--~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2enf_A 13 YKCNECGKVFT--QNSHLVRHRGIHTGEKPSGPS 44 (46)
T ss_dssp CBCSSSCCBCS--SHHHHHHHHTTTTTSSCCCCS
T ss_pred eECCCCCcccC--CHHHHHHHHHhhCCCCCCCCC
Confidence 46888876432 233322 24556778999996
No 67
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.66 E-value=36 Score=19.22 Aligned_cols=31 Identities=19% Similarity=0.174 Sum_probs=19.1
Q ss_pred hccccccceeeeccHHHHH-HHHhhhcCCCeeec
Q 029286 29 AQCEKCFKWRVINSSEEYE-EIRCKIAEIPFVCD 61 (196)
Q Consensus 29 vQC~~C~KwR~ipt~e~yE-eir~~~~~~pf~C~ 61 (196)
.+|..|.|.=.- +..+. =+|.+..+.||.|+
T Consensus 13 ~~C~~C~k~f~~--~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2yrj_A 13 YRCGECGKAFAQ--KANLTQHQRIHTGEKPSGPS 44 (46)
T ss_dssp EECSSSCCEESS--HHHHHHHHTTTSSCCSSCSC
T ss_pred eECCCCCCccCC--HHHHHHHHHHcCCCCCCCCC
Confidence 468888875332 22222 24556678999996
No 68
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.24 E-value=45 Score=18.83 Aligned_cols=31 Identities=19% Similarity=0.151 Sum_probs=19.4
Q ss_pred hccccccceeeeccHHHHH-HHHhhhcCCCeeec
Q 029286 29 AQCEKCFKWRVINSSEEYE-EIRCKIAEIPFVCD 61 (196)
Q Consensus 29 vQC~~C~KwR~ipt~e~yE-eir~~~~~~pf~C~ 61 (196)
-+|..|.|.= .++..+. -++.+..+.||.|.
T Consensus 13 ~~C~~C~k~f--~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2eoq_A 13 FKCDICGKSF--CGRSRLNRHSMVHTAEKPSGPS 44 (46)
T ss_dssp CCCSSSCCCC--SSHHHHHHHHHHTTCCCSSSCC
T ss_pred cCCCcCCchh--CCHHHHHHHHHHcCCCCCCCCC
Confidence 4677787642 2333332 25667789999997
No 69
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=20.03 E-value=25 Score=23.86 Aligned_cols=14 Identities=21% Similarity=0.631 Sum_probs=11.5
Q ss_pred hhhhccccccceee
Q 029286 26 TYAAQCEKCFKWRV 39 (196)
Q Consensus 26 ~yavQC~~C~KwR~ 39 (196)
..-|||..|..|--
T Consensus 29 ~~mI~Cd~C~~W~H 42 (72)
T 1wee_A 29 ERMLACDGCGVWHH 42 (72)
T ss_dssp SCEEECSSSCEEEE
T ss_pred CcEEECCCCCCccC
Confidence 46799999999943
No 70
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.01 E-value=45 Score=18.76 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=19.9
Q ss_pred hccccccceeeeccHHHHHH-HHhhhcCCCeeec
Q 029286 29 AQCEKCFKWRVINSSEEYEE-IRCKIAEIPFVCD 61 (196)
Q Consensus 29 vQC~~C~KwR~ipt~e~yEe-ir~~~~~~pf~C~ 61 (196)
-+|..|.|.= .++..+.. +|.+..+.||.|.
T Consensus 13 ~~C~~C~k~f--~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2ytf_A 13 FECSECQKAF--NTKSNLIVHQRTHTGEKPSGPS 44 (46)
T ss_dssp EECSSSCCEE--SSHHHHHHHHHTSCSSSSSCCC
T ss_pred cCCCCCCccc--CCHHHHHHHHHHhCCCCCCCCC
Confidence 5788887753 33333332 5666788999996
Done!