BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029287
(196 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN
Conformation
Length = 196
Score = 179 bits (455), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 91/190 (47%), Positives = 129/190 (67%), Gaps = 10/190 (5%)
Query: 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIAS-NSEYGTTILNTIKEGKI 67
P + FVLGGPG+GKGTQCA+IV+ YG THLSAGELLR E + +S+YG I IKEGKI
Sbjct: 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKI 62
Query: 68 VPSEVTVSLIQKEME-----SSDSKKFLIDGFPRSEENRAAFERIMGAEPDI--VLFFDC 120
VP E+T+SL+++EM+ ++ KFLIDGFPR+++N + + M + D+ VLFFDC
Sbjct: 63 VPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDC 122
Query: 121 PEEEMVNRVLNR--NEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVD 178
E + R L R + GR DDN +++ KR+Q + P+I+ Y GK+ I+A +VD
Sbjct: 123 NNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVD 182
Query: 179 EIFEQVRAVF 188
E+F++V +F
Sbjct: 183 EVFDEVVQIF 192
>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
pdb|1UKZ|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
Length = 203
Score = 167 bits (424), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/181 (45%), Positives = 123/181 (67%), Gaps = 7/181 (3%)
Query: 11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIA-SNSEYGTTILNTIKEGKIVP 69
+ FVLGGPG+GKGTQC K+VK+Y HLSAG+LLR E + S+YG I N IKEG+IVP
Sbjct: 17 VIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVP 76
Query: 70 SEVTVSLIQKEMES---SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMV 126
E+T++L++ + ++ KFLIDGFPR + +FER + E +LFFDCPE+ M+
Sbjct: 77 QEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDI-VESKFILFFDCPEDIML 135
Query: 127 NRVLNRNE--GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQV 184
R+L R + GR DDNI++++KR FK ++PVI Y+ + K+ + +V+++++ V
Sbjct: 136 ERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDV 195
Query: 185 R 185
+
Sbjct: 196 Q 196
>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At
2.1 Angstroms Resolution
Length = 195
Score = 164 bits (415), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 84/186 (45%), Positives = 120/186 (64%), Gaps = 5/186 (2%)
Query: 11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPS 70
I FV+GGPGSGKGTQC KIV+ YG THLS G+LLR E++S S G + +++G++VP
Sbjct: 11 IIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPL 70
Query: 71 EVTVSLIQKEM--ESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNR 128
E + +++ M + SK FLIDG+PR + FER +G +P ++L+ D E M R
Sbjct: 71 ETVLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFERKIG-QPTLLLYVDAGPETMTKR 129
Query: 129 VLNRNE--GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRA 186
+L R E GRVDDN +T++KRL+ + PVI +Y +RG + +NA G+VD++F QV
Sbjct: 130 LLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDDVFSQVCT 189
Query: 187 VFAALK 192
LK
Sbjct: 190 HLDTLK 195
>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|B Chain B, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|C Chain C, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|2C95|A Chain A, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
pdb|2C95|B Chain B, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
Length = 196
Score = 164 bits (415), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 84/185 (45%), Positives = 120/185 (64%), Gaps = 5/185 (2%)
Query: 11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPS 70
I FV+GGPGSGKGTQC KIV+ YG THLS G+LLR E++S S G + +++G++VP
Sbjct: 11 IIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPL 70
Query: 71 EVTVSLIQKEM--ESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNR 128
E + +++ M + + SK FLIDG+PR + FER +G +P ++L+ D E M R
Sbjct: 71 ETVLDMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIG-QPTLLLYVDAGPETMTQR 129
Query: 129 VLNRNE--GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRA 186
+L R E GRVDDN +T++KRL+ + PVI +Y +RG + +NA G+VD +F QV
Sbjct: 130 LLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCT 189
Query: 187 VFAAL 191
AL
Sbjct: 190 HLDAL 194
>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog In UmpCMP
Kinase
pdb|5UKD|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog
pdb|1UKE|A Chain A, UmpCMP KINASE FROM SLIME MOLD
pdb|2UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP
pdb|3UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP, AND
Alf3
pdb|4UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, UDP,
Beryllium Fluoride
Length = 194
Score = 164 bits (415), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 89/187 (47%), Positives = 123/187 (65%), Gaps = 4/187 (2%)
Query: 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIV 68
P + FVLGGPGSGKGTQCA IV+++G HLSAG+LLR+E S S+ G I IK G+IV
Sbjct: 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIV 65
Query: 69 PSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMG--AEPDIVLFFDCPEEEMV 126
PS VTV L++ ++++ K FL+DGFPR+EEN ++E M + VLFFDCPEE M
Sbjct: 66 PSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMT 125
Query: 127 NRVLNRNE--GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQV 184
R+L R E GR DDNI++++KR F VI++Y + K+ I A V+E++ V
Sbjct: 126 QRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDV 185
Query: 185 RAVFAAL 191
+F ++
Sbjct: 186 ENLFKSM 192
>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5
pdb|2BWJ|B Chain B, Structure Of Adenylate Kinase 5
pdb|2BWJ|C Chain C, Structure Of Adenylate Kinase 5
pdb|2BWJ|D Chain D, Structure Of Adenylate Kinase 5
pdb|2BWJ|E Chain E, Structure Of Adenylate Kinase 5
pdb|2BWJ|F Chain F, Structure Of Adenylate Kinase 5
Length = 199
Score = 156 bits (395), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 79/178 (44%), Positives = 118/178 (66%), Gaps = 5/178 (2%)
Query: 11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPS 70
I F++GGPGSGKGTQC K+V+ YG THLS GELLR E+AS SE I + ++ G +VPS
Sbjct: 14 IIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPS 73
Query: 71 EVTVSLIQKEMESS--DSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNR 128
+ + L+++ M +S D++ FLIDG+PR + F R +G +P +V+ DC + M NR
Sbjct: 74 GIVLELLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIG-DPQLVICMDCSADTMTNR 132
Query: 129 VL--NRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQV 184
+L +R+ VDD T+ KRL+ + ++PVI YY + +L+ INA GT +++F Q+
Sbjct: 133 LLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQL 190
>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase
Length = 217
Score = 142 bits (358), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/178 (44%), Positives = 112/178 (62%), Gaps = 5/178 (2%)
Query: 11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPS 70
+ FVLGGPGSGKGTQC K+V+ + HLS+G+LLR E+ S S G + ++ G++VP
Sbjct: 31 VIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPL 90
Query: 71 EVTVSLIQKEMESSDSK--KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNR 128
EV ++L+++ M K FLIDG+PR + FE+ + V+ FD EE M R
Sbjct: 91 EVVLALLKEAMIKLVDKNCHFLIDGYPRELDQGIKFEKEV-CPCLCVINFDVSEEVMRKR 149
Query: 129 VLNRNE--GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQV 184
+L R E RVDDN +T+ KR + F L PVI +Y ++ K+ TI+A GTVD IF++V
Sbjct: 150 LLKRAETSNRVDDNEETIVKRFRTFNELTKPVIEHYKQQNKVITIDASGTVDAIFDKV 207
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 100/174 (57%), Gaps = 8/174 (4%)
Query: 12 CFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSE 71
+LG PG+GKGTQ K+ + G+ +S GEL RR I ++ G + G +VPS+
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSD 62
Query: 72 VTVSLIQKEMESSDSKK-FLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVN 127
+T L+ + + D+ F++DG+PRS E A ++ G + D VL F EE ++
Sbjct: 63 LTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLE 122
Query: 128 RVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIF 181
R+ R GR DD D + R++V++ P++ YY R +L T++AVGT+DE+F
Sbjct: 123 RLKGR--GRADDTDDVILNRMKVYRDETAPLLEYY--RDQLKTVDAVGTMDEVF 172
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 100/174 (57%), Gaps = 8/174 (4%)
Query: 12 CFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSE 71
+LG PG+GKGTQ K+ + G+ +S GEL RR I ++ G + G +VPS+
Sbjct: 23 VLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSD 82
Query: 72 VTVSLIQKEMESSDSKK-FLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVN 127
+T L+ + + D+ F++DG+PRS E A ++ G + D VL F EE ++
Sbjct: 83 LTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLE 142
Query: 128 RVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIF 181
R+ R GR DD D + R++V++ P++ YY R +L T++AVGT+DE+F
Sbjct: 143 RLKGR--GRADDTDDVILNRMKVYRDETAPLLEYY--RDQLKTVDAVGTMDEVF 192
>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus
Thermophilus Hb8
Length = 186
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 111/187 (59%), Gaps = 10/187 (5%)
Query: 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKI 67
G + F LG PG+GKGTQ +++ + G LS G++LR +A + G + ++ G +
Sbjct: 4 GQAVIF-LGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDL 62
Query: 68 VPSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVL---FFDCPEEE 124
VP ++ + LI++E+ +++ + DGFPR+ A +R++ +L + PEEE
Sbjct: 63 VPDDLILELIREEL----AERVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEE 118
Query: 125 MVNRVLNRNE--GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFE 182
+V R+L R E GR DDN +TVR+RL+V++ P++ YY RG L ++ +GT DE++
Sbjct: 119 LVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYA 178
Query: 183 QVRAVFA 189
++RA
Sbjct: 179 RIRAALG 185
>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2
pdb|2AK2|A Chain A, Adenylate Kinase Isoenzyme-2
Length = 233
Score = 110 bits (274), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 103/209 (49%), Gaps = 33/209 (15%)
Query: 14 VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
+LG PG+GKGTQ K+ KN+ + HL+ G++LR +AS SE G + T+ GK+V E+
Sbjct: 21 LLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMV 80
Query: 74 VSLIQKEMESSDSKK-FLIDGFPRSEENRAAFERIMGAEP---DIVLFFDCPEEEMVNRV 129
+ LI+K +E+ K FL+DGFPR+ + +M D V+ F P+ ++ R+
Sbjct: 81 LELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRI 140
Query: 130 LNR----NEG-------------------------RVDDNIDTVRKRLQVFKALNLPVIN 160
R G R DDN ++ RL+ + P++
Sbjct: 141 TGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVE 200
Query: 161 YYARRGKLYTINAVGTVDEIFEQVRAVFA 189
YY++RG I+A T D +F + A F+
Sbjct: 201 YYSKRGIHSAIDASQTPDVVFASILAAFS 229
>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2
Length = 242
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 102/209 (48%), Gaps = 33/209 (15%)
Query: 14 VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
+LG PG+GKGTQ ++ +N+ + HL+ G++LR +AS SE G + T+ GK+V E+
Sbjct: 21 LLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMV 80
Query: 74 VSLIQKEMESSDSKK-FLIDGFPRSEENRAAFERIMGAEP---DIVLFFDCPEEEMVNRV 129
V LI+K +E+ K FL+DGFPR+ + +M D V+ F P+ ++ R+
Sbjct: 81 VELIEKNLETPLCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRI 140
Query: 130 LNR----NEG-------------------------RVDDNIDTVRKRLQVFKALNLPVIN 160
R G R DDN ++ RLQ + P+I
Sbjct: 141 TGRLIHPKSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNEKALKIRLQAYHTQTTPLIE 200
Query: 161 YYARRGKLYTINAVGTVDEIFEQVRAVFA 189
YY +RG I+A T D +F + A F+
Sbjct: 201 YYRKRGIHSAIDASQTPDVVFASILAAFS 229
>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|B Chain B, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|C Chain C, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|D Chain D, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
Length = 243
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 108/203 (53%), Gaps = 33/203 (16%)
Query: 15 LGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTV 74
LG PGSGKGTQ + K++ HLS G+LLR +E G I N I EGK+V ++ +
Sbjct: 35 LGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVL 94
Query: 75 SLIQKEMESSDSKK-FLIDGFPRSEENRAAFERIMGAEP---DIVLFFDCPEEEMVNRV- 129
SL+ +++++ KK F++DG+PR+ + +++ D V +F+ P+E +VNR+
Sbjct: 95 SLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRIS 154
Query: 130 ---LNRNEGRV-------------------------DDNIDTVRKRLQVFKALNLPVINY 161
+++ GR+ DDN D ++KRL VFK+ P+I+Y
Sbjct: 155 GRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISY 214
Query: 162 YARRGKLYTINAVGTVDEIFEQV 184
Y + L ++A +++ +++
Sbjct: 215 YKNKNLLINLDATQPANDLEKKI 237
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 27/205 (13%)
Query: 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVP 69
I LG PG+GKGTQ ++ K G H+S G++LR + + G ++ G++VP
Sbjct: 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVP 60
Query: 70 SEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMV 126
++ ++LI++ + + DGFPR+ + A + ++ G + D VL F+ P+E ++
Sbjct: 61 DDLIIALIEEVFPKHGN--VIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVI 118
Query: 127 NRV----LNRNEGRV------------------DDNIDTVRKRLQVFKALNLPVINYYAR 164
R+ +N G V DD + ++KRL+V++ P+I YY +
Sbjct: 119 ERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKK 178
Query: 165 RGKLYTINAVGTVDEIFEQVRAVFA 189
+G L I+A V+E++ QV V
Sbjct: 179 KGILRIIDASKPVEEVYRQVLEVIG 203
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 102/205 (49%), Gaps = 32/205 (15%)
Query: 14 VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
+LG PGSGKGT C +I +N+GL HLS+G LR I +++E G I++ +VP V
Sbjct: 32 ILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVI 91
Query: 74 VSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNR- 132
L+ E+E+ + +L+DGFPR+ A ++I E D+V+ + P E + +R+ R
Sbjct: 92 TRLMMSELENRRGQHWLLDGFPRTLGQAEALDKI--CEVDLVISLNIPFETLKDRLSRRW 149
Query: 133 ---NEGRV-------------------------DDNIDTVRKRLQVFKALNLPVINYYAR 164
GRV DD + V RL+ +K + PVI Y
Sbjct: 150 IHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKS 209
Query: 165 RGKLYTINAVGTVDEIFEQVRAVFA 189
RG L+ + T ++I+ V +F+
Sbjct: 210 RGVLHQFSGTET-NKIWPYVYTLFS 233
>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
pdb|1ZAK|B Chain B, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
Length = 222
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 76/126 (60%), Gaps = 3/126 (2%)
Query: 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIV 68
P + G P SGKGTQC I Y L H+SAG+LLR EIA+ SE G +++G++V
Sbjct: 5 PLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLV 64
Query: 69 PSEVTVSLIQKEMESSDSKK--FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMV 126
P E+ V+++++ + D+++ +L+DG+PRS A E + PD + D P+E +V
Sbjct: 65 PDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALE-TLEIRPDTFILLDVPDELLV 123
Query: 127 NRVLNR 132
RV+ R
Sbjct: 124 ERVVGR 129
>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1AKE|B Chain B, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1ANK|A Chain A, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|1ANK|B Chain B, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|4AKE|A Chain A, Adenylate Kinase
pdb|4AKE|B Chain B, Adenylate Kinase
pdb|2ECK|A Chain A, Structure Of Phosphotransferase
pdb|2ECK|B Chain B, Structure Of Phosphotransferase
pdb|3HPQ|A Chain A, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
pdb|3HPQ|B Chain B, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
Length = 214
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 94/182 (51%), Gaps = 31/182 (17%)
Query: 13 FVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEV 72
+LG PG+GKGTQ I++ YG+ +S G++LR + S SE G + + GK+V E+
Sbjct: 4 ILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDEL 63
Query: 73 TVSLIQKEMESSDSKK-FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLN 131
++L+++ + D + FL+DGFPR+ A + G D VL FD P+E +V+R++
Sbjct: 64 VIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVG 122
Query: 132 RN----EGRV-------------------------DDNIDTVRKRLQVFKALNLPVINYY 162
R GRV DD +TVRKRL + + P+I YY
Sbjct: 123 RRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYY 182
Query: 163 AR 164
++
Sbjct: 183 SK 184
>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
pdb|3HPR|B Chain B, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
Length = 214
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 94/182 (51%), Gaps = 31/182 (17%)
Query: 13 FVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEV 72
+LG PG+GKGTQ I++ YG+ +S G++LR + S SE G + + GK+V E+
Sbjct: 4 ILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDEL 63
Query: 73 TVSLIQKEMESSDSKK-FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLN 131
++L+++ + D + FL+DGFPR+ A + G D VL FD P+E +V+R++
Sbjct: 64 VIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVG 122
Query: 132 RN----EGRV-------------------------DDNIDTVRKRLQVFKALNLPVINYY 162
R GRV DD +TVRKRL + + P+I YY
Sbjct: 123 RRVHAPSGRVYHVKFNPPKVEGKDDGTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYY 182
Query: 163 AR 164
++
Sbjct: 183 SK 184
>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
Length = 231
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 101/205 (49%), Gaps = 32/205 (15%)
Query: 14 VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
+LG PGSGKGT C +I +N+GL HLS+G LR I +++E G I++ +VP V
Sbjct: 10 ILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVI 69
Query: 74 VSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNR- 132
L+ E+E+ + +L+DGFPR+ A ++I E D+V+ + P E + +R+ R
Sbjct: 70 TRLMMSELENRRGQHWLLDGFPRTLGQAEALDKI--CEVDLVISLNIPFETLKDRLSRRW 127
Query: 133 ---NEGRV-------------------------DDNIDTVRKRLQVFKALNLPVINYYAR 164
GRV DD + V R + +K + PVI Y
Sbjct: 128 IHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARPRQYKDVAKPVIELYKS 187
Query: 165 RGKLYTINAVGTVDEIFEQVRAVFA 189
RG L+ + T ++I+ V +F+
Sbjct: 188 RGVLHQFSGTET-NKIWPYVYTLFS 211
>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus
Marinus
Length = 216
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 107/212 (50%), Gaps = 33/212 (15%)
Query: 14 VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
++G PG+GKGTQ +I++ Y + H+S G++ R I + +E G + + +G +VP EVT
Sbjct: 5 LMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVT 64
Query: 74 VSLIQKEMESSDSKK-FLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRV 129
+ ++ + + D +K FL+DGFPR+ A + + +G + D VL +EE++ R+
Sbjct: 65 IGIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRL 124
Query: 130 LNRN------------------EG-----------RVDDNIDTVRKRLQVFKALNLPVIN 160
R EG R+DD +TV+ RL V P+++
Sbjct: 125 TGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLD 184
Query: 161 YYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192
+Y+++G L I+ + ++F + + L+
Sbjct: 185 FYSQKGVLKDIDGQQDIKKVFVDINDLLGGLR 216
>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
pdb|2AK3|B Chain B, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
Length = 226
Score = 100 bits (248), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 105/209 (50%), Gaps = 33/209 (15%)
Query: 14 VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
++G PGSGKGT ++I K++ L HLS+G+LLR + +E G I +GK++P +V
Sbjct: 11 IMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVM 70
Query: 74 VSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCP----EEEMVNRV 129
L+ E+++ +L+DGFPR+ A +R + D V+ + P ++ + R
Sbjct: 71 TRLVLHELKNLTQYNWLLDGFPRTLPQAEALDR--AYQIDTVINLNVPFEVIKQRLTARW 128
Query: 130 LNRNEGRV-------------------------DDNIDTVRKRLQVFKALNLPVINYYAR 164
++ GRV DD +TV KRL+ ++A PV+ YY +
Sbjct: 129 IHPGSGRVYNIEFNPPKTMGIDDLTGEPLVQREDDRPETVVKRLKAYEAQTEPVLEYYRK 188
Query: 165 RGKLYTINAVGTVDEIFEQVRAVFAALKL 193
+G L T + T ++I+ V A F KL
Sbjct: 189 KGVLETFSGTET-NKIWPHVYA-FLQTKL 215
>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a
pdb|1ZIO|A Chain A, Phosphotransferase
pdb|1ZIP|A Chain A, Bacillus Stearothermophilus Adenylate Kinase
Length = 217
Score = 99.8 bits (247), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 101/211 (47%), Gaps = 33/211 (15%)
Query: 14 VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
++G PG+GKGTQ KIV YG+ H+S G++ R + + G + G +VP EVT
Sbjct: 5 LMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVT 64
Query: 74 VSLIQKEMESSDSKK-FLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPE----EEM 125
+ ++++ + D + FL+DGFPR+ A E ++ G + D V+ D + E +
Sbjct: 65 IGIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERL 124
Query: 126 VNRVLNRNEG-------------------------RVDDNIDTVRKRLQVFKALNLPVIN 160
R + RN G R DDN TV RL+V P+++
Sbjct: 125 TGRRICRNCGATYHLIFHPPAKPGVCDKCGGELYQRADDNEATVANRLEVNMKQMKPLVD 184
Query: 161 YYARRGKLYTINAVGTVDEIFEQVRAVFAAL 191
+Y ++G L IN ++++F +R + L
Sbjct: 185 FYEQKGYLRNINGEQDMEKVFADIRELLGGL 215
>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus
Globisporus
Length = 217
Score = 99.8 bits (247), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 102/208 (49%), Gaps = 33/208 (15%)
Query: 14 VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
++G PG+GKGTQ +IV+ YG H+S G++ R I +E G + + +G +VP EVT
Sbjct: 5 LMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVT 64
Query: 74 VSLIQKEMESSDSKK-FLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRV 129
+ ++++ + SD FL+DGFPR+ A +++ MG + + VL +EE++ R+
Sbjct: 65 IGIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIARL 124
Query: 130 LNRN------------------EG-----------RVDDNIDTVRKRLQVFKALNLPVIN 160
R EG R DDN DTV RL+V P++
Sbjct: 125 TGRRICKVCGTSYHLLFNPPQVEGKCDKDGGELYQRADDNPDTVTNRLEVNMNQTAPLLA 184
Query: 161 YYARRGKLYTINAVGTVDEIFEQVRAVF 188
+Y + L IN + ++F+ + +
Sbjct: 185 FYDSKEVLVNINGQKDIKDVFKDLDVIL 212
>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1
Length = 217
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 104/212 (49%), Gaps = 33/212 (15%)
Query: 14 VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
++G PG+GKGTQ +IV+ YG+ H+S G++ R + + G + I +G++VP EVT
Sbjct: 5 LMGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT 64
Query: 74 VSLIQKEMESSDSKK-FLIDGFPRS---EENRAAFERIMGAEPDIVLFFDCPEEEMVNRV 129
+ ++++ + SD ++ FL+DGFPR+ E MG D V+ +EE++ R+
Sbjct: 65 IGIVRERLSKSDCERGFLLDGFPRTVAQAEALEEILEEMGRPIDYVINIQVDKEELMERL 124
Query: 130 LNR------------------------NEG-----RVDDNIDTVRKRLQVFKALNLPVIN 160
R +G R DDN +TV KRL+V P++
Sbjct: 125 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLA 184
Query: 161 YYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192
+Y + L +N + ++F V+ + LK
Sbjct: 185 FYDSKEVLVNVNGQQDIQDVFADVKVILGGLK 216
>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4V|B Chain B, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 93/182 (51%), Gaps = 31/182 (17%)
Query: 13 FVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEV 72
+LG P +GKGTQ I++ YG+ +S G++LR + S SE G + + GK+V E+
Sbjct: 4 ILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDEL 63
Query: 73 TVSLIQKEMESSDSKK-FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLN 131
++L+++ + D + FL+DGFPR+ A + G D VL FD P+E +V+R++
Sbjct: 64 VIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVG 122
Query: 132 RN----EGRV-------------------------DDNIDTVRKRLQVFKALNLPVINYY 162
R GRV DD +TVRKRL + + P+I YY
Sbjct: 123 RRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYY 182
Query: 163 AR 164
++
Sbjct: 183 SK 184
>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate
Kinase Cgd5_3360
Length = 217
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 99/209 (47%), Gaps = 33/209 (15%)
Query: 13 FVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEV 72
++G PGSGKGTQC I K YGL HLS G++LR I + ++ G + I+ G V E+
Sbjct: 9 ILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEI 68
Query: 73 TVSLIQKEMESSDS-KKFLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVNR 128
+ L++++ + F++DGFPR+ +I+ G V++F+ + E++ R
Sbjct: 69 VLGLVKEKFDLGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIER 128
Query: 129 VLNR----NEGRV-------------------------DDNIDTVRKRLQVFKALNLPVI 159
+ R GR+ DDN + V+ RL VF P++
Sbjct: 129 ISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAPLV 188
Query: 160 NYYARRGKLYTINAVGTVDEIFEQVRAVF 188
+Y G L +NA E+ EQ++ +
Sbjct: 189 KFYEDLGILKRVNAKLPPKEVTEQIKKIL 217
>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis
Length = 217
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 106/212 (50%), Gaps = 33/212 (15%)
Query: 14 VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
++G PG+GKGTQ +IV++YG+ H+S G++ R + + G + I +G++VP EVT
Sbjct: 5 LMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT 64
Query: 74 VSLIQKEMESSDSKK-FLIDGFPRS---EENRAAFERIMGAEPDIVLFFDCPEEEMVNRV 129
+ ++++ + D ++ FL+DGFPR+ E G D V+ + ++ ++ R+
Sbjct: 65 IGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERL 124
Query: 130 LNR------------------------NEG-----RVDDNIDTVRKRLQVFKALNLPVIN 160
R +G R DDN +TV KRL+V P+++
Sbjct: 125 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLD 184
Query: 161 YYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192
+Y+ +G L +N + +++ V+ + LK
Sbjct: 185 FYSEKGYLANVNGQQDIQDVYADVKDLLGGLK 216
>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
pdb|2ORI|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
Length = 216
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 106/212 (50%), Gaps = 33/212 (15%)
Query: 14 VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
++G PG+GKGTQ +IV++YG+ H+S G++ R + + G + I +G++VP EVT
Sbjct: 5 LMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT 64
Query: 74 VSLIQKEMESSDSKK-FLIDGFPRS---EENRAAFERIMGAEPDIVLFFDCPEEEMVNRV 129
+ ++++ + D ++ FL+DGFPR+ E G D V+ + ++ ++ R+
Sbjct: 65 IGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERL 124
Query: 130 LNR------------------------NEG-----RVDDNIDTVRKRLQVFKALNLPVIN 160
R +G R DDN +TV KRL+V P+++
Sbjct: 125 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLD 184
Query: 161 YYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192
+Y+ +G L +N + +++ V+ + LK
Sbjct: 185 FYSEKGYLVNVNGQRDIQDVYADVKDLLGGLK 216
>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3
pdb|3DL0|B Chain B, Crystal Structure Of Adenylate Kinase Variant Aklse3
Length = 216
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 104/212 (49%), Gaps = 33/212 (15%)
Query: 14 VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
++G PG+GKGTQ +IV+ YG+ H+S G++ R + + G + I +G++VP EVT
Sbjct: 5 LMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT 64
Query: 74 VSLIQKEMESSDSKK-FLIDGFPRS---EENRAAFERIMGAEPDIVLFFDCPEEEMVNRV 129
+ ++++ + D ++ FL+DGFPR+ E MG D V+ ++ ++ R+
Sbjct: 65 IGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERL 124
Query: 130 LNR------------------------NEG-----RVDDNIDTVRKRLQVFKALNLPVIN 160
R +G R DDN +TV KRL+V P+++
Sbjct: 125 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLD 184
Query: 161 YYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192
+Y +G L +N + +++ ++ + LK
Sbjct: 185 FYDEKGYLVNVNGQQDIQDVYADLKVLLGGLK 216
>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
pdb|2EU8|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
Length = 216
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 106/212 (50%), Gaps = 33/212 (15%)
Query: 14 VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
++G PG+GKGTQ +IV++YG+ H+S G++ R + + G + I +G++VP EVT
Sbjct: 5 LMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT 64
Query: 74 VSLIQKEMESSDSKK-FLIDGFPRS---EENRAAFERIMGAEPDIVLFFDCPEEEMVNRV 129
+ ++++ + D ++ FL+DGFPR+ E G D V+ + ++ ++ R+
Sbjct: 65 IGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERL 124
Query: 130 LNR------------------------NEG-----RVDDNIDTVRKRLQVFKALNLPVIN 160
R +G R DDN +TV KRL+V P+++
Sbjct: 125 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLD 184
Query: 161 YYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192
+Y+ +G L +N + +++ V+ + LK
Sbjct: 185 FYSEKGYLANVNGQRDIQDVYADVKDLLGGLK 216
>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4Y|B Chain B, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 92/182 (50%), Gaps = 31/182 (17%)
Query: 13 FVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEV 72
+LG +GKGTQ I++ YG+ +S G++LR + S SE G + + GK+V E+
Sbjct: 4 ILLGALVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDEL 63
Query: 73 TVSLIQKEMESSDSKK-FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLN 131
++L+++ + D + FL+DGFPR+ A + G D VL FD P+E +V+R++
Sbjct: 64 VIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVG 122
Query: 132 RN----EGRV-------------------------DDNIDTVRKRLQVFKALNLPVINYY 162
R GRV DD +TVRKRL + + P+I YY
Sbjct: 123 RRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYY 182
Query: 163 AR 164
++
Sbjct: 183 SK 184
>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
pdb|2QAJ|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
Length = 217
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 106/212 (50%), Gaps = 33/212 (15%)
Query: 14 VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
++G PG+GKGTQ +IV++YG+ H+S G++ R + + G + I +G++VP EVT
Sbjct: 5 LMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT 64
Query: 74 VSLIQKEMESSDSKK-FLIDGFPRS---EENRAAFERIMGAEPDIVLFFDCPEEEMVNRV 129
+ ++++ + D ++ FL+DGFPR+ E G D V+ + ++ ++ R+
Sbjct: 65 IGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERL 124
Query: 130 LNR------------------------NEG-----RVDDNIDTVRKRLQVFKALNLPVIN 160
R +G R DDN +TV KRL+V P+++
Sbjct: 125 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLD 184
Query: 161 YYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192
+Y+ +G L +N + +++ V+ + LK
Sbjct: 185 FYSEKGYLANVNGQRDIQDVYADVKDLLEGLK 216
>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (G214rQ199R)
Length = 217
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 106/212 (50%), Gaps = 33/212 (15%)
Query: 14 VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
++G PG+GKGTQ +IV++YG+ H+S G++ R + + G + I +G++VP EVT
Sbjct: 5 LMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT 64
Query: 74 VSLIQKEMESSDSKK-FLIDGFPRS---EENRAAFERIMGAEPDIVLFFDCPEEEMVNRV 129
+ ++++ + D ++ FL+DGFPR+ E G D V+ + ++ ++ R+
Sbjct: 65 IGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERL 124
Query: 130 LNR------------------------NEG-----RVDDNIDTVRKRLQVFKALNLPVIN 160
R +G R DDN +TV KRL+V P+++
Sbjct: 125 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLD 184
Query: 161 YYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192
+Y+ +G L +N + +++ V+ + LK
Sbjct: 185 FYSEKGYLANVNGQRDIQDVYADVKDLLGRLK 216
>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1
Length = 227
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 99/204 (48%), Gaps = 32/204 (15%)
Query: 12 CFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSE 71
++G PGSGKGT ++I ++ L HLS+G+LLR + +E G I +GK++P +
Sbjct: 10 AVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDD 69
Query: 72 VTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCP----EEEMVN 127
V L E+++ +L+DGFPR+ A +R + D V+ + P ++ +
Sbjct: 70 VMTRLALHELKNLTQYSWLLDGFPRTLPQAEALDR--AYQIDTVINLNVPFEVIKQRLTA 127
Query: 128 RVLNRNEGRV-------------------------DDNIDTVRKRLQVFKALNLPVINYY 162
R ++ GRV DD +TV KRL+ ++ PV+ YY
Sbjct: 128 RWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLEYY 187
Query: 163 ARRGKLYTINAVGTVDEIFEQVRA 186
++G L T + T ++I+ V A
Sbjct: 188 QKKGVLETFSGTET-NKIWPYVYA 210
>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
pdb|2OO7|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
Length = 217
Score = 93.2 bits (230), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 106/212 (50%), Gaps = 33/212 (15%)
Query: 14 VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
++G PG+GKGTQ +IV++YG+ H+S G++ R + + G + I +G++VP EVT
Sbjct: 5 LMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT 64
Query: 74 VSLIQKEMESSDSKK-FLIDGFPRS---EENRAAFERIMGAEPDIVLFFDCPEEEMVNRV 129
+ ++++ + D ++ FL+DGFPR+ E G D V+ + ++ ++ R+
Sbjct: 65 IGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERL 124
Query: 130 LNR------------------------NEG-----RVDDNIDTVRKRLQVFKALNLPVIN 160
R +G R DDN +TV KRL+V P+++
Sbjct: 125 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQIQPLLD 184
Query: 161 YYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192
+Y+ +G L +N + +++ V+ + LK
Sbjct: 185 FYSEKGYLANVNGQRDIQDVYADVKDLLGGLK 216
>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
pdb|2OSB|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
Length = 216
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 105/212 (49%), Gaps = 33/212 (15%)
Query: 14 VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
++G PG+GKGT +IV++YG+ H+S G++ R + + G + I +G++VP EVT
Sbjct: 5 LMGLPGAGKGTLGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT 64
Query: 74 VSLIQKEMESSDSKK-FLIDGFPRS---EENRAAFERIMGAEPDIVLFFDCPEEEMVNRV 129
+ ++++ + D ++ FL+DGFPR+ E G D V+ + ++ ++ R+
Sbjct: 65 IGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERL 124
Query: 130 LNR------------------------NEG-----RVDDNIDTVRKRLQVFKALNLPVIN 160
R +G R DDN +TV KRL+V P+++
Sbjct: 125 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLD 184
Query: 161 YYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192
+Y+ +G L +N + +++ V+ + LK
Sbjct: 185 FYSEKGYLANVNGQRDIQDVYADVKDLLGGLK 216
>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
pdb|3GMT|B Chain B, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
Length = 230
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 100/214 (46%), Gaps = 42/214 (19%)
Query: 13 FVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEV 72
+LG PG+GKGTQ I + +G+ +S G+ LR + + + G EGK+VP +
Sbjct: 12 ILLGAPGAGKGTQANFIKEKFGIPQISTGDXLRAAVKAGTPLGVEAKTYXDEGKLVPDSL 71
Query: 73 TVSLIQKEMESSD-SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLN 131
+ L+++ ++ +D + +L DGFPR+ A + G D VL D P E++ R
Sbjct: 72 IIGLVKERLKEADCANGYLFDGFPRTIAQADAXKE-AGVAIDYVLEIDVPFSEIIERXSG 130
Query: 132 RN------------------EG-----------RVDDNIDTVRKRLQVFKALNLPVINYY 162
R EG R DD +TV+KRL V++A P+I YY
Sbjct: 131 RRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYY 190
Query: 163 ---ARRG--------KLYTINAVGTVDEIFEQVR 185
ARRG I+ +G V+EI +VR
Sbjct: 191 GDWARRGAENGLKAPAYRKISGLGAVEEIRARVR 224
>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase
Mutants
Length = 220
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 95/194 (48%), Gaps = 34/194 (17%)
Query: 14 VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
++G PG+GKGTQ + + + HL+ G++LR +IA ++ G + +G +V ++
Sbjct: 9 LIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIM 68
Query: 74 VSLIQKEMESSDSKK--FLIDGFPRS-----------EENRAAFERIMGAEPDIVLF--- 117
V++I+ E+ ++ + K F++DGFPR+ +E E+ + + D L
Sbjct: 69 VNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVAR 128
Query: 118 -----------------FDCPEEEMVNRVLNRN-EGRVDDNIDTVRKRLQVFKALNLPVI 159
F+ P+E+M + V R DDN D ++KRL + A P++
Sbjct: 129 ITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIV 188
Query: 160 NYYARRGKLYTINA 173
++Y + G ++A
Sbjct: 189 DFYKKTGIWAGVDA 202
>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
pdb|2AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
Length = 220
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 95/194 (48%), Gaps = 34/194 (17%)
Query: 14 VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
++G PG+GKGTQ + + + HL+ G++LR +IA ++ G + +G +V ++
Sbjct: 9 LIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIM 68
Query: 74 VSLIQKEMESSDSKK--FLIDGFPRS-----------EENRAAFERIMGAEPDIVLF--- 117
V++I+ E+ ++ + K F++DGFPR+ +E E+ + + D L
Sbjct: 69 VNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVAR 128
Query: 118 -----------------FDCPEEEMVNRVLNRN-EGRVDDNIDTVRKRLQVFKALNLPVI 159
F+ P+E+M + V R DDN D ++KRL + A P++
Sbjct: 129 ITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIV 188
Query: 160 NYYARRGKLYTINA 173
++Y + G ++A
Sbjct: 189 DFYKKTGIWAGVDA 202
>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
pdb|1DVR|B Chain B, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
Length = 220
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 95/194 (48%), Gaps = 34/194 (17%)
Query: 14 VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
++G PG+GKGTQ + + + HL+ G++LR +IA ++ G + +G +V ++
Sbjct: 9 LIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIM 68
Query: 74 VSLIQKEMESSDSKK--FLIDGFPRS-----------EENRAAFERIMGAEPDIVLF--- 117
V++I+ E+ ++ + K F++ GFPR+ +E E+ + + D L
Sbjct: 69 VNMIKDELTNNPACKNGFILVGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVAR 128
Query: 118 -----------------FDCPEEEMVNRVLNRNEGRV-DDNIDTVRKRLQVFKALNLPVI 159
F+ P+E+M + V ++ DDN D ++KRL + A P++
Sbjct: 129 ITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQISDDNADALKKRLAAYHAQTEPIV 188
Query: 160 NYYARRGKLYTINA 173
++Y + G ++A
Sbjct: 189 DFYKKTGIWAGVDA 202
>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase
From Desulfovibrio Gigas
Length = 223
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 3/123 (2%)
Query: 13 FVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEV 72
+ G GSGKGTQ + Y L H+ +G + R I +E G I G +VP ++
Sbjct: 4 LIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDI 63
Query: 73 TVSLIQKEMESSDSKKFLIDGFPRSE-ENRAAFERIM--GAEPDIVLFFDCPEEEMVNRV 129
T+ ++ + +ES +L+DGFPR+ + + FE + G + + V+ P E NR+
Sbjct: 64 TIPMVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRI 123
Query: 130 LNR 132
+ R
Sbjct: 124 MGR 126
>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase
From Desulfovibrio Gigas
pdb|3L0S|A Chain A, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
pdb|3L0S|C Chain C, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
Length = 223
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 3/123 (2%)
Query: 13 FVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEV 72
+ G GSGKGTQ + Y L H+ +G + R I +E G I G +VP ++
Sbjct: 4 LIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDI 63
Query: 73 TVSLIQKEMESSDSKKFLIDGFPRSE-ENRAAFERIM--GAEPDIVLFFDCPEEEMVNRV 129
T+ ++ + +ES +L+DGFPR+ + + FE + G + + V+ P E NR+
Sbjct: 64 TIPMVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRI 123
Query: 130 LNR 132
+ R
Sbjct: 124 MGR 126
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 33.5 bits (75), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 41/183 (22%)
Query: 11 ICFVLGGPGSGKGTQCAKIVKNY----GLTHLSAGEL-------LRREIASNSE----YG 55
+ ++G GSGK T + +++ Y G L ++ LR +I + S+ +
Sbjct: 372 VTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS 431
Query: 56 TTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKFLIDGFPR---------------SEEN 100
+I I G PS VT IQ+ E +++ F I FP+ ++
Sbjct: 432 CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAF-IRNFPQGFNTVVGEKGVLLSGGQKQ 490
Query: 101 RAAFERIMGAEPDIVLF------FDCPEEEMVNRVLNR-NEGRVDDNIDTVRKRLQVFKA 153
R A R + P I+L D E +V L+R +GR + + RL K
Sbjct: 491 RIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGR---TVLVIAHRLSTIKN 547
Query: 154 LNL 156
N+
Sbjct: 548 ANM 550
>pdb|1XRJ|A Chain A, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
pdb|1XRJ|B Chain B, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
Length = 261
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 2 QVKGGKGPFICFVLGGPGSGKGTQCAKIVKNYG 34
Q G PF+ V GG SGK + CAKIV+ G
Sbjct: 13 QQPNGGEPFLIGVSGGTASGKSSVCAKIVQLLG 45
>pdb|1LY1|A Chain A, Structure And Mechanism Of T4 Polynucleotide Kinase
Length = 181
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 10/175 (5%)
Query: 11 ICFVLGGPGSGKGTQCAK-IVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVP 69
I +G PGSGK T + I KN G +++ + R+ I ++ E KEG +
Sbjct: 4 IILTIGCPGSGKSTWAREFIAKNPGFYNINRDD-YRQSIMAHEERDEYKYTKKKEGIVTG 62
Query: 70 SEVTVSLIQKEMESSDS-KKFLIDGFPRSEENRAAFERIMGAEPDIVLF--FDCPEEEMV 126
+ + + + DS K +I + E R A+E V FD P E+V
Sbjct: 63 MQFDTA--KSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELV 120
Query: 127 NRVLNRNEGRVDDNIDTVRKRLQVFKA-LNLPVINYYARRGKLYTINAVGTVDEI 180
R N G ID +R + + L LPV N + K + GT+ ++
Sbjct: 121 KR--NSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAKM 173
>pdb|2IA5|A Chain A, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
Magnesium.
pdb|2IA5|B Chain B, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
Magnesium.
pdb|2IA5|C Chain C, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
Magnesium.
pdb|2IA5|D Chain D, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
Magnesium.
pdb|2IA5|E Chain E, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
Magnesium.
pdb|2IA5|F Chain F, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
Magnesium.
pdb|2IA5|G Chain G, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
Magnesium.
pdb|2IA5|H Chain H, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
Magnesium.
pdb|2IA5|I Chain I, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
Magnesium.
pdb|2IA5|J Chain J, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
Magnesium.
pdb|2IA5|K Chain K, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
Magnesium.
pdb|2IA5|L Chain L, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
Magnesium
Length = 301
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 70/172 (40%), Gaps = 10/172 (5%)
Query: 11 ICFVLGGPGSGKGTQCAK-IVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVP 69
I +G PGSGK T + I KN G +++ + R+ I ++ E KEG +
Sbjct: 4 IILTIGCPGSGKSTWAREFIAKNPGFYNINRDD-YRQSIMAHEERDEYKYTKKKEGIVTG 62
Query: 70 SEVTVSLIQKEMESSDS-KKFLIDGFPRSEENRAAFERIMGAEPDIVLF--FDCPEEEMV 126
+ + + + DS K +I + E R A+E V FD P E+V
Sbjct: 63 MQFDTA--KSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELV 120
Query: 127 NRVLNRNEGRVDDNIDTVRKRLQVFKA-LNLPVINYYARRGKLYTINAVGTV 177
R N G ID +R + + L LPV N + K + GT+
Sbjct: 121 KR--NSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTL 170
>pdb|1LTQ|A Chain A, Crystal Structure Of T4 Polynucleotide Kinase
pdb|1RC8|A Chain A, T4 Polynucleotide Kinase Bound To 5'-Gtcac-3' Ssdna
pdb|1RPZ|A Chain A, T4 Polynucleotide Kinase Bound To 5'-Tgcac-3' Ssdna
pdb|1RRC|A Chain A, T4 Polynucleotide Kinase Bound To 5'-Gtc-3' Ssdna
Length = 301
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 70/172 (40%), Gaps = 10/172 (5%)
Query: 11 ICFVLGGPGSGKGTQCAK-IVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVP 69
I +G PGSGK T + I KN G +++ + R+ I ++ E KEG +
Sbjct: 4 IILTIGCPGSGKSTWAREFIAKNPGFYNINRDD-YRQSIXAHEERDEYKYTKKKEGIVTG 62
Query: 70 SEVTVSLIQKEMESSDS-KKFLIDGFPRSEENRAAFERIMGAEPDIVLF--FDCPEEEMV 126
+ + + + DS K +I + E R A+E V FD P E+V
Sbjct: 63 XQFDTA--KSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELV 120
Query: 127 NRVLNRNEGRVDDNIDTVRKRLQVFKA-LNLPVINYYARRGKLYTINAVGTV 177
R N G ID +R + + L LPV N + K + GT+
Sbjct: 121 KR--NSKRGTKAVPIDVLRSXYKSXREYLGLPVYNGTPGKPKAVIFDVDGTL 170
>pdb|1UDW|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With A Feedback-inhibitor, Ctp
pdb|1UDW|B Chain B, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With A Feedback-inhibitor, Ctp
pdb|1UEI|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Feedback-Inhibitor, Utp
pdb|1UEI|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Feedback-Inhibitor, Utp
pdb|1UEJ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Substrate, Cytidine
pdb|1UEJ|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Substrate, Cytidine
pdb|1UFQ|A Chain A, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|B Chain B, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|C Chain C, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|D Chain D, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UJ2|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With Products, Cmp And Adp
pdb|1UJ2|B Chain B, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With Products, Cmp And Adp
Length = 252
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 2 QVKGGKGPFICFVLGGPGSGKGTQCAKIVKNYG 34
Q G PF+ V GG SGK + CAKIV+ G
Sbjct: 15 QQPNGGEPFLIGVSGGTASGKSSVCAKIVQLLG 47
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 37/158 (23%)
Query: 11 ICFVLGGPGSGKGTQCAKIVKNY----GLTHLSAGEL-------LRREIASNSE----YG 55
+ ++G GSGK T + +++ Y G L ++ LR +I + S+ +
Sbjct: 403 VTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS 462
Query: 56 TTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKFLIDGFPR---------------SEEN 100
+I I G PS VT IQ+ E +++ F I FP+ ++
Sbjct: 463 CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAF-IRNFPQGFNTVVGEKGVLLSGGQKQ 521
Query: 101 RAAFERIMGAEPDIVLF------FDCPEEEMVNRVLNR 132
R A R + P I+L D E +V L+R
Sbjct: 522 RIAIARALLKNPKILLLDEATSALDAENEYLVQEALDR 559
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLT--HLSAGEL 43
K P I + GG G GK QC + + G+ +SAGEL
Sbjct: 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGEL 72
>pdb|2GOP|A Chain A, The Beta-Propeller Domain Of The Trilobed Protease From
Pyrococcus Furiosus Reveals An Open Velcro Topology
pdb|2GOP|B Chain B, The Beta-Propeller Domain Of The Trilobed Protease From
Pyrococcus Furiosus Reveals An Open Velcro Topology
Length = 347
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 52 SEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAE 111
SE L T+ KI+ ++ SL E DS+K LI GF R E+ FE + A
Sbjct: 85 SEIWVADLETLSSKKILEAKNIRSLEWNE----DSRKLLIVGFKRREDEDFIFEDDVPAW 140
Query: 112 PDIVLFFD 119
D + FFD
Sbjct: 141 FDDLGFFD 148
>pdb|3DMD|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|A Chain A, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3E70|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 12/127 (9%)
Query: 2 QVKGGKGPFICFVLGGPGSGKGTQCAKI---VKNYGLT-HLSAGELLRR-EIASNSEYGT 56
+++ + P++ +G GSGK T AK+ +KN+G + ++A + R I E+
Sbjct: 122 EIRKAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAK 181
Query: 57 TI-LNTIKEGKIV-PSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMG----A 110
I + IK P+ V IQ ++ LID RSE NR + +
Sbjct: 182 RIGVKVIKHSYGADPAAVAYDAIQ-HAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVT 240
Query: 111 EPDIVLF 117
+P++V+F
Sbjct: 241 KPNLVIF 247
>pdb|1S21|A Chain A, Crystal Structure Of Avrpphf Orf2, A Type Iii Effector
From P. Syringae
Length = 206
Score = 30.0 bits (66), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 26/64 (40%)
Query: 122 EEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIF 181
EE+ ++ G D D R R +LN P +N A +G L + D +
Sbjct: 99 HEELQESPYAQHIGARPDQADAYRPRTAHVSSLNTPSLNVMAGQGALSALRGYAGSDHVT 158
Query: 182 EQVR 185
++R
Sbjct: 159 TEMR 162
>pdb|1VMA|A Chain A, Crystal Structure Of Cell Division Protein Ftsy (Tm0570)
From Thermotoga Maritima At 1.60 A Resolution
pdb|1VMA|B Chain B, Crystal Structure Of Cell Division Protein Ftsy (Tm0570)
From Thermotoga Maritima At 1.60 A Resolution
Length = 306
Score = 30.0 bits (66), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 9 PFICFVLGGPGSGKGTQCAKIVKNY 33
PF+ V+G G+GK T C K+ K +
Sbjct: 104 PFVIMVVGVNGTGKTTSCGKLAKMF 128
>pdb|3STJ|A Chain A, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|B Chain B, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|C Chain C, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|D Chain D, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|E Chain E, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|F Chain F, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|G Chain G, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|H Chain H, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|I Chain I, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|J Chain J, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|K Chain K, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|L Chain L, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
Length = 345
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 7 KGPFICFVLGGPGSGK-GTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTI-LNTIKE 64
+G F+ VL G GS K G + I+ + L++ LR IA+ +E GT + L ++
Sbjct: 263 RGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIAT-TEPGTKVKLGLLRN 321
Query: 65 GKIVPSEVTVSLIQKEME 82
GK + EVT+ +E
Sbjct: 322 GKPLEVEVTLDTSTSSLE 339
>pdb|1Q3T|A Chain A, Solution Structure And Function Of An Essential Cmp
Kinase Of Streptococcus Pneumoniae
Length = 236
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 11 ICFVLGGPGS-GKGTQCAKIVKNYGLTHLSAGELLR 45
I + GP S GK T I K++G T+L G + R
Sbjct: 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYR 52
>pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|B Chain B, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|C Chain C, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|D Chain D, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|E Chain E, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|F Chain F, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|G Chain G, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|H Chain H, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|I Chain I, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|J Chain J, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|K Chain K, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|L Chain L, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8B|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8C|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A9G|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|M Chain M, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|N Chain N, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|O Chain O, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|P Chain P, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Q Chain Q, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|R Chain R, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|S Chain S, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|T Chain T, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|U Chain U, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|V Chain V, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|W Chain W, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Y Chain Y, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
Length = 436
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 7 KGPFICFVLGGPGSGK-GTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTI-LNTIKE 64
+G F+ VL G GS K G + I+ + L++ LR IA+ +E GT + L ++
Sbjct: 263 RGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIAT-TEPGTKVKLGLLRN 321
Query: 65 GKIVPSEVTV 74
GK + EVT+
Sbjct: 322 GKPLEVEVTL 331
>pdb|3DM9|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 2 QVKGGKGPFICFVLGGPGSGKGTQCAKI---VKNYGLT-HLSAGELLRR-EIASNSEYGT 56
+++ + P++ +G GSGK T AK+ +KN+G + ++A + R I E+
Sbjct: 122 EIRKAEKPYVIXFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAK 181
Query: 57 TI-LNTIKEGKIV-PSEVTVSLIQKEMESSDSKKFLIDGFPRSEENR 101
I + IK P+ V IQ ++ LID RSE NR
Sbjct: 182 RIGVKVIKHSYGADPAAVAYDAIQ-HAKARGIDVVLIDTAGRSETNR 227
>pdb|2JEO|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1
pdb|2UVQ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1 In
Complex With Adp
Length = 245
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 9 PFICFVLGGPGSGKGTQCAKIVKNYG 34
PF+ V GG SGK T C KI++ G
Sbjct: 25 PFLIGVSGGTASGKSTVCEKIMELLG 50
>pdb|2YHS|A Chain A, Structure Of The E. Coli Srp Receptor Ftsy
Length = 503
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 6 GKGPFICFVLGGPGSGKGTQCAKIVKNY----GLTHLSAGELLR 45
GK PF+ ++G G GK T K+ + + L+AG+ R
Sbjct: 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR 333
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0
Angstroms Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 13/69 (18%)
Query: 13 FVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREI---ASNSEYGTTIL---------- 59
+ G PG GK T ++ GL +++ G+L R E + EY IL
Sbjct: 15 LLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELD 74
Query: 60 NTIKEGKIV 68
N ++EG ++
Sbjct: 75 NQMREGGVI 83
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 13 FVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREI---ASNSEYGTTILN 60
+ G PG GK T ++ GL +++ G+L R E + EY IL+
Sbjct: 8 LLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILD 58
>pdb|2QY9|A Chain A, Structure Of The Ng+1 Construct Of The E. Coli Srp
Receptor Ftsy
Length = 309
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 6 GKGPFICFVLGGPGSGKGTQCAKIVKNY----GLTHLSAGELLR 45
GK PF+ ++G G GK T K+ + + L+AG+ R
Sbjct: 96 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR 139
>pdb|2XXA|B Chain B, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|D Chain D, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 302
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 6 GKGPFICFVLGGPGSGKGTQCAKIVKNY----GLTHLSAGELLR 45
GK PF+ ++G G GK T K+ + + L+AG+ R
Sbjct: 95 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR 138
>pdb|1FTS|A Chain A, Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 6 GKGPFICFVLGGPGSGKGTQCAKIVKNY----GLTHLSAGELLR 45
GK PF+ ++G G GK T K+ + + L+AG+ R
Sbjct: 90 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR 133
>pdb|1P2Z|A Chain A, Refinement Of Adenovirus Type 2 Hexon With Cns
Length = 967
Score = 26.9 bits (58), Expect = 6.9, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 50 SNSEYGTTILNTIKEGKIVPSEVTVSLIQK-EMESSDSKKFLID 92
+NS + + T++EG+ P+ V LI K ++S KKFL D
Sbjct: 839 NNSGFVGYLAPTMREGQAYPANVPYPLIGKTAVDSITQKKFLCD 882
>pdb|2PBR|A Chain A, Crystal Structure Of Thymidylate Kinase (Aq_969) From
Aquifex Aeolicus Vf5
pdb|2PBR|B Chain B, Crystal Structure Of Thymidylate Kinase (Aq_969) From
Aquifex Aeolicus Vf5
Length = 195
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 109 GAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKL 168
G +PDI L D P + + R+ +N + ++ VRK + +
Sbjct: 120 GVKPDITLLLDIPVDIALRRLKEKNRFENKEFLEKVRK----------GFLELAKEEENV 169
Query: 169 YTINAVGTVDEIFEQV-RAVFAALKL 193
I+A G +E+F+++ RA+ L++
Sbjct: 170 VVIDASGEEEEVFKEILRALSGVLRV 195
>pdb|3AQ7|A Chain A, Crystal Structure Of Truncated Hemoglobin From Tetrahymena
Pyriformis, Y25f Mutant, Fe(Iii) Form
pdb|3AQ7|B Chain B, Crystal Structure Of Truncated Hemoglobin From Tetrahymena
Pyriformis, Y25f Mutant, Fe(Iii) Form
Length = 121
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTT 57
F+ +LGGP KG + K L +L ++ A+ E G T
Sbjct: 53 FLTMLLGGPNHYKGKNMTEAHKGMNLQNLHFDAIIENLAATLKELGVT 100
>pdb|3AQ9|A Chain A, Crystal Structure Of Truncated Hemoglobin From Tetrahymena
Pyriformis, Q50e Mutant, Fe(Iii) Form
pdb|3AQ9|B Chain B, Crystal Structure Of Truncated Hemoglobin From Tetrahymena
Pyriformis, Q50e Mutant, Fe(Iii) Form
Length = 121
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTT 57
F+ +LGGP KG + K L +L ++ A+ E G T
Sbjct: 53 FLTMLLGGPNHYKGKNMTEAHKGMNLQNLHFDAIIENLAATLKELGVT 100
>pdb|3AQ8|A Chain A, Crystal Structure Of Truncated Hemoglobin From Tetrahymena
Pyriformis, Q46e Mutant, Fe(Iii) Form
pdb|3AQ8|B Chain B, Crystal Structure Of Truncated Hemoglobin From Tetrahymena
Pyriformis, Q46e Mutant, Fe(Iii) Form
Length = 121
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTT 57
F+ +LGGP KG + K L +L ++ A+ E G T
Sbjct: 53 FLTMLLGGPNHYKGKNMTEAHKGMNLQNLHFDAIIENLAATLKELGVT 100
>pdb|3AQ5|A Chain A, Crystal Structure Of Truncated Hemoglobin From Tetrahymena
Pyriformis, Fe(Ii)-O2 Form
pdb|3AQ5|B Chain B, Crystal Structure Of Truncated Hemoglobin From Tetrahymena
Pyriformis, Fe(Ii)-O2 Form
pdb|3AQ6|A Chain A, Crystal Structure Of Truncated Hemoglobin From Tetrahymena
Pyriformis, Fe(Iii) Form
pdb|3AQ6|B Chain B, Crystal Structure Of Truncated Hemoglobin From Tetrahymena
Pyriformis, Fe(Iii) Form
Length = 121
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTT 57
F+ +LGGP KG + K L +L ++ A+ E G T
Sbjct: 53 FLTMLLGGPNHYKGKNMTEAHKGMNLQNLHFDAIIENLAATLKELGVT 100
>pdb|2XHY|A Chain A, Crystal Structure Of E.Coli Bgla
pdb|2XHY|B Chain B, Crystal Structure Of E.Coli Bgla
pdb|2XHY|C Chain C, Crystal Structure Of E.Coli Bgla
pdb|2XHY|D Chain D, Crystal Structure Of E.Coli Bgla
Length = 479
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 12/18 (66%)
Query: 4 KGGKGPFICFVLGGPGSG 21
KGGKGP IC VL G G
Sbjct: 29 KGGKGPSICDVLTGGAHG 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,718,544
Number of Sequences: 62578
Number of extensions: 228686
Number of successful extensions: 741
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 589
Number of HSP's gapped (non-prelim): 93
length of query: 196
length of database: 14,973,337
effective HSP length: 94
effective length of query: 102
effective length of database: 9,091,005
effective search space: 927282510
effective search space used: 927282510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)