Query 029287
Match_columns 196
No_of_seqs 107 out of 1648
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 10:29:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029287.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029287hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3079 Uridylate kinase/adeny 100.0 3E-36 6.5E-41 208.1 23.0 185 6-190 5-193 (195)
2 PLN02200 adenylate kinase fami 100.0 9.4E-35 2E-39 215.4 25.0 191 6-196 40-230 (234)
3 PLN02674 adenylate kinase 100.0 6.1E-33 1.3E-37 205.0 24.1 182 7-188 29-243 (244)
4 PRK14531 adenylate kinase; Pro 100.0 2.5E-32 5.5E-37 196.3 23.5 178 9-188 2-182 (183)
5 PRK13808 adenylate kinase; Pro 100.0 1.6E-32 3.5E-37 210.1 23.7 184 10-193 1-196 (333)
6 PLN02459 probable adenylate ki 100.0 1.1E-31 2.3E-36 199.1 23.7 180 8-189 28-250 (261)
7 TIGR01359 UMP_CMP_kin_fam UMP- 100.0 3E-31 6.5E-36 191.0 23.6 178 11-188 1-182 (183)
8 PRK14528 adenylate kinase; Pro 100.0 4.4E-31 9.6E-36 190.0 23.7 178 10-187 2-185 (186)
9 PRK14529 adenylate kinase; Pro 100.0 1.7E-31 3.7E-36 195.2 21.8 179 10-188 1-222 (223)
10 PRK14532 adenylate kinase; Pro 100.0 1.3E-30 2.8E-35 188.4 23.9 179 11-189 2-186 (188)
11 PRK14527 adenylate kinase; Pro 100.0 1.5E-30 3.2E-35 188.4 23.8 181 8-188 5-190 (191)
12 TIGR01351 adk adenylate kinase 100.0 2.8E-30 6.1E-35 189.5 23.6 177 12-188 2-209 (210)
13 PRK02496 adk adenylate kinase; 100.0 4.9E-30 1.1E-34 184.8 24.1 178 9-188 1-182 (184)
14 PRK14526 adenylate kinase; Pro 100.0 2.2E-30 4.8E-35 188.9 22.5 178 11-190 2-209 (211)
15 PRK00279 adk adenylate kinase; 100.0 4.6E-30 1E-34 189.1 23.5 181 10-190 1-214 (215)
16 PTZ00088 adenylate kinase 1; P 100.0 1.8E-29 3.9E-34 186.1 22.8 178 8-187 5-228 (229)
17 TIGR01360 aden_kin_iso1 adenyl 100.0 4E-28 8.7E-33 175.3 24.6 181 10-191 4-188 (188)
18 PRK14530 adenylate kinase; Pro 100.0 3.2E-28 6.9E-33 179.3 22.9 175 11-190 5-213 (215)
19 cd01428 ADK Adenylate kinase ( 100.0 3.1E-27 6.7E-32 171.5 20.9 170 11-180 1-194 (194)
20 PLN02842 nucleotide kinase 100.0 7.5E-27 1.6E-31 187.0 22.1 177 14-193 2-205 (505)
21 COG0563 Adk Adenylate kinase a 100.0 9.3E-27 2E-31 165.4 19.5 173 10-188 1-177 (178)
22 PF00406 ADK: Adenylate kinase 100.0 7.1E-27 1.5E-31 163.1 18.1 146 14-166 1-150 (151)
23 KOG3078 Adenylate kinase [Nucl 99.9 4E-22 8.6E-27 144.7 18.6 183 8-192 14-226 (235)
24 COG0125 Tmk Thymidylate kinase 99.9 5.5E-21 1.2E-25 138.5 14.8 174 8-193 2-206 (208)
25 PRK13973 thymidylate kinase; P 99.9 5.1E-20 1.1E-24 135.3 19.9 170 9-192 3-208 (213)
26 PRK01184 hypothetical protein; 99.9 4.6E-19 1E-23 127.6 21.7 173 9-193 1-181 (184)
27 PRK13974 thymidylate kinase; P 99.9 5.8E-20 1.3E-24 134.9 17.0 176 10-195 4-211 (212)
28 PLN02924 thymidylate kinase 99.8 1.9E-19 4E-24 132.4 17.6 173 4-191 11-204 (220)
29 PRK00698 tmk thymidylate kinas 99.8 2.2E-18 4.7E-23 126.1 15.5 173 9-192 3-204 (205)
30 PRK13975 thymidylate kinase; P 99.8 1E-17 2.2E-22 121.8 18.9 166 9-190 2-190 (196)
31 PRK00081 coaE dephospho-CoA ki 99.8 3.4E-18 7.4E-23 123.9 15.9 164 9-190 2-193 (194)
32 PRK07933 thymidylate kinase; V 99.8 2.2E-18 4.8E-23 126.4 14.3 168 10-188 1-211 (213)
33 PRK03839 putative kinase; Prov 99.8 2.6E-17 5.6E-22 118.1 18.2 152 10-190 1-153 (180)
34 PRK08356 hypothetical protein; 99.8 1.7E-17 3.7E-22 120.5 17.0 175 7-192 3-194 (195)
35 PRK13976 thymidylate kinase; P 99.8 1.9E-17 4.1E-22 120.9 17.0 171 10-193 1-204 (209)
36 PRK06217 hypothetical protein; 99.8 2.7E-17 5.8E-22 118.3 16.6 161 9-189 1-178 (183)
37 PRK14730 coaE dephospho-CoA ki 99.8 1.8E-17 3.9E-22 120.0 15.8 162 10-188 2-192 (195)
38 PRK14734 coaE dephospho-CoA ki 99.8 1.8E-17 3.8E-22 120.5 15.6 167 10-193 2-197 (200)
39 PRK14731 coaE dephospho-CoA ki 99.8 2.2E-17 4.7E-22 120.9 15.7 171 6-194 2-206 (208)
40 COG0237 CoaE Dephospho-CoA kin 99.8 4E-17 8.6E-22 117.9 16.3 168 9-193 2-195 (201)
41 PRK08233 hypothetical protein; 99.8 1.1E-17 2.4E-22 120.1 13.3 170 8-190 2-177 (182)
42 PLN02422 dephospho-CoA kinase 99.8 5.4E-17 1.2E-21 119.5 16.8 165 10-192 2-196 (232)
43 PRK14733 coaE dephospho-CoA ki 99.8 1.4E-16 3.1E-21 115.4 17.9 170 7-194 4-202 (204)
44 TIGR00041 DTMP_kinase thymidyl 99.8 1.3E-16 2.8E-21 115.9 16.8 161 9-184 3-195 (195)
45 COG1102 Cmk Cytidylate kinase 99.8 7.7E-16 1.7E-20 104.9 18.9 168 10-192 1-174 (179)
46 PF02223 Thymidylate_kin: Thym 99.7 1.9E-17 4.1E-22 119.4 11.4 159 14-184 1-186 (186)
47 cd01672 TMPK Thymidine monopho 99.7 4.4E-16 9.5E-21 113.2 18.7 166 10-189 1-199 (200)
48 PTZ00451 dephospho-CoA kinase; 99.7 5.8E-16 1.3E-20 115.1 18.0 167 9-192 1-209 (244)
49 PRK14732 coaE dephospho-CoA ki 99.7 2E-16 4.3E-21 114.5 14.5 165 11-193 1-193 (196)
50 PRK04040 adenylate kinase; Pro 99.7 6.3E-16 1.4E-20 111.3 16.9 171 9-188 2-187 (188)
51 cd02030 NDUO42 NADH:Ubiquinone 99.7 4.7E-16 1E-20 114.8 16.6 172 11-185 1-216 (219)
52 PRK13949 shikimate kinase; Pro 99.7 8.9E-16 1.9E-20 108.8 17.3 157 10-186 2-167 (169)
53 COG0703 AroK Shikimate kinase 99.7 6.6E-16 1.4E-20 107.6 14.3 157 9-191 2-169 (172)
54 PRK08118 topology modulation p 99.7 4.3E-16 9.3E-21 110.2 13.3 97 10-132 2-99 (167)
55 COG1936 Predicted nucleotide k 99.7 2.7E-15 5.8E-20 103.6 15.9 154 10-190 1-156 (180)
56 PRK03731 aroL shikimate kinase 99.7 1.2E-15 2.5E-20 108.6 14.4 154 10-189 3-169 (171)
57 PHA02530 pseT polynucleotide k 99.7 8.7E-16 1.9E-20 118.7 13.5 163 9-179 2-171 (300)
58 PRK06762 hypothetical protein; 99.7 1.2E-14 2.7E-19 102.9 18.3 157 9-188 2-162 (166)
59 PF01121 CoaE: Dephospho-CoA k 99.7 4.9E-16 1.1E-20 110.8 9.6 152 10-179 1-180 (180)
60 PRK04182 cytidylate kinase; Pr 99.7 2.9E-14 6.3E-19 102.1 18.9 170 10-194 1-177 (180)
61 cd02022 DPCK Dephospho-coenzym 99.7 3.1E-15 6.8E-20 107.1 13.6 128 11-150 1-156 (179)
62 PRK03333 coaE dephospho-CoA ki 99.7 3.2E-15 7E-20 119.0 14.8 166 10-192 2-194 (395)
63 KOG3327 Thymidylate kinase/ade 99.7 4E-15 8.6E-20 103.4 13.3 172 9-193 5-198 (208)
64 COG3265 GntK Gluconate kinase 99.7 7.3E-15 1.6E-19 98.7 13.9 153 15-189 1-158 (161)
65 TIGR00152 dephospho-CoA kinase 99.7 5.1E-15 1.1E-19 106.9 14.0 158 11-185 1-187 (188)
66 KOG3220 Similar to bacterial d 99.7 3E-14 6.6E-19 100.4 17.3 164 9-190 1-194 (225)
67 cd01673 dNK Deoxyribonucleosid 99.6 4.9E-15 1.1E-19 107.4 13.1 156 11-175 1-186 (193)
68 TIGR01313 therm_gnt_kin carboh 99.6 4.4E-14 9.5E-19 99.7 17.6 155 12-188 1-161 (163)
69 PRK13946 shikimate kinase; Pro 99.6 3E-14 6.6E-19 102.5 16.7 165 8-193 9-179 (184)
70 TIGR02173 cyt_kin_arch cytidyl 99.6 1.1E-13 2.3E-18 98.4 19.2 113 10-133 1-113 (171)
71 PRK00131 aroK shikimate kinase 99.6 4.2E-14 9.1E-19 100.8 16.9 165 8-193 3-174 (175)
72 PRK13947 shikimate kinase; Pro 99.6 6.7E-14 1.4E-18 99.5 16.6 157 11-186 3-163 (171)
73 PRK00625 shikimate kinase; Pro 99.6 2.3E-14 5E-19 101.6 14.0 114 10-133 1-117 (173)
74 COG2019 AdkA Archaeal adenylat 99.6 1.7E-13 3.7E-18 94.0 17.2 172 7-190 2-188 (189)
75 PRK13948 shikimate kinase; Pro 99.6 1E-13 2.2E-18 99.1 16.9 164 7-191 8-176 (182)
76 KOG3347 Predicted nucleotide k 99.6 3.5E-14 7.5E-19 95.6 13.2 160 10-193 8-169 (176)
77 KOG3354 Gluconate kinase [Carb 99.6 6.2E-14 1.3E-18 94.9 13.7 158 10-188 13-186 (191)
78 PRK05057 aroK shikimate kinase 99.6 1E-13 2.2E-18 98.6 15.6 162 9-189 4-170 (172)
79 PRK10078 ribose 1,5-bisphospho 99.6 1.3E-13 2.9E-18 99.3 16.4 165 10-193 3-179 (186)
80 COG3839 MalK ABC-type sugar tr 99.6 2.1E-15 4.5E-20 116.2 6.7 167 11-186 31-227 (338)
81 COG3842 PotA ABC-type spermidi 99.6 7.9E-16 1.7E-20 119.1 4.4 168 10-186 32-230 (352)
82 PRK05480 uridine/cytidine kina 99.6 5.4E-14 1.2E-18 103.2 13.8 38 7-44 4-44 (209)
83 COG0572 Udk Uridine kinase [Nu 99.6 1.3E-14 2.8E-19 104.8 9.1 148 7-164 6-177 (218)
84 PRK09825 idnK D-gluconate kina 99.6 9.9E-14 2.1E-18 98.9 13.4 159 10-191 4-169 (176)
85 COG0283 Cmk Cytidylate kinase 99.6 7.2E-13 1.6E-17 94.9 17.3 173 9-190 4-219 (222)
86 PRK11545 gntK gluconate kinase 99.6 4.3E-13 9.3E-18 94.6 15.5 154 15-191 1-161 (163)
87 PRK14738 gmk guanylate kinase; 99.5 1.2E-13 2.7E-18 101.0 12.3 167 6-191 10-195 (206)
88 PLN02199 shikimate kinase 99.5 8.6E-13 1.9E-17 99.7 16.8 166 9-193 102-291 (303)
89 cd02021 GntK Gluconate kinase 99.5 3.6E-13 7.8E-18 93.8 13.6 131 11-154 1-138 (150)
90 COG1428 Deoxynucleoside kinase 99.5 7.8E-13 1.7E-17 94.5 15.3 30 9-38 4-33 (216)
91 PF13671 AAA_33: AAA domain; P 99.5 7.9E-14 1.7E-18 96.2 9.9 115 11-134 1-120 (143)
92 PRK13477 bifunctional pantoate 99.5 3.6E-13 7.8E-18 109.5 15.0 40 8-47 283-322 (512)
93 PRK08154 anaerobic benzoate ca 99.5 8.3E-13 1.8E-17 102.3 16.5 164 8-193 132-304 (309)
94 cd00227 CPT Chloramphenicol (C 99.5 3.9E-12 8.5E-17 90.8 17.6 158 10-188 3-174 (175)
95 PRK14021 bifunctional shikimat 99.5 1.1E-12 2.5E-17 108.5 16.6 168 8-190 5-176 (542)
96 PRK07261 topology modulation p 99.5 1.3E-13 2.8E-18 98.0 9.2 100 10-133 1-100 (171)
97 COG1126 GlnQ ABC-type polar am 99.5 1.1E-13 2.3E-18 99.2 8.3 109 10-123 29-165 (240)
98 PRK05541 adenylylsulfate kinas 99.5 8.8E-13 1.9E-17 94.3 12.8 107 8-131 6-121 (176)
99 TIGR03574 selen_PSTK L-seryl-t 99.5 4.3E-12 9.4E-17 95.6 16.3 160 11-190 1-169 (249)
100 PF01202 SKI: Shikimate kinase 99.5 1.7E-12 3.8E-17 91.1 13.1 152 18-188 1-157 (158)
101 PRK12339 2-phosphoglycerate ki 99.5 3.4E-12 7.3E-17 92.4 14.5 120 8-133 2-141 (197)
102 PTZ00301 uridine kinase; Provi 99.5 2.6E-13 5.7E-18 99.1 8.7 175 9-193 3-208 (210)
103 PRK00023 cmk cytidylate kinase 99.5 5.6E-12 1.2E-16 93.4 15.9 38 9-46 4-41 (225)
104 COG1134 TagH ABC-type polysacc 99.5 7.5E-14 1.6E-18 101.7 5.7 174 10-190 54-244 (249)
105 COG1116 TauB ABC-type nitrate/ 99.5 8.2E-14 1.8E-18 102.0 5.8 146 10-164 30-199 (248)
106 cd00464 SK Shikimate kinase (S 99.5 5.4E-12 1.2E-16 88.1 14.9 109 12-133 2-113 (154)
107 COG1124 DppF ABC-type dipeptid 99.5 3.7E-13 7.9E-18 98.1 9.0 161 10-181 34-230 (252)
108 PRK06547 hypothetical protein; 99.5 1.6E-13 3.5E-18 97.3 7.0 125 6-133 12-139 (172)
109 COG0194 Gmk Guanylate kinase [ 99.5 5E-12 1.1E-16 88.8 13.9 161 8-189 3-181 (191)
110 TIGR00235 udk uridine kinase. 99.5 1.7E-12 3.7E-17 95.1 11.9 174 7-190 4-204 (207)
111 COG4088 Predicted nucleotide k 99.5 2.4E-12 5.3E-17 91.5 12.0 161 10-188 2-171 (261)
112 TIGR02322 phosphon_PhnN phosph 99.4 1E-11 2.2E-16 89.0 15.5 162 10-189 2-177 (179)
113 COG1127 Ttg2A ABC-type transpo 99.4 2.9E-13 6.4E-18 98.3 7.3 165 10-190 35-243 (263)
114 COG1118 CysA ABC-type sulfate/ 99.4 1.9E-13 4.1E-18 102.5 6.3 165 10-183 29-228 (345)
115 TIGR00017 cmk cytidylate kinas 99.4 4.8E-12 1E-16 93.1 13.5 39 9-47 2-40 (217)
116 cd02020 CMPK Cytidine monophos 99.4 3.8E-12 8.2E-17 88.1 11.7 103 11-132 1-103 (147)
117 COG1121 ZnuC ABC-type Mn/Zn tr 99.4 2E-13 4.2E-18 101.1 4.3 161 10-183 31-228 (254)
118 PRK06696 uridine kinase; Valid 99.4 1.1E-11 2.3E-16 91.9 12.5 121 6-133 19-168 (223)
119 PRK14737 gmk guanylate kinase; 99.4 2E-11 4.4E-16 87.8 13.5 162 8-189 3-183 (186)
120 PRK09518 bifunctional cytidyla 99.4 6.3E-12 1.4E-16 107.4 12.5 38 10-47 2-39 (712)
121 COG1120 FepC ABC-type cobalami 99.4 4.8E-13 1E-17 99.5 4.8 162 10-182 29-228 (258)
122 KOG4235 Mitochondrial thymidin 99.4 1.2E-10 2.6E-15 82.0 16.3 76 103-180 145-223 (244)
123 PRK12338 hypothetical protein; 99.4 5.7E-11 1.2E-15 91.2 16.0 177 8-191 3-205 (319)
124 PRK03846 adenylylsulfate kinas 99.4 3.9E-11 8.4E-16 87.4 14.5 159 6-190 21-192 (198)
125 smart00072 GuKc Guanylate kina 99.4 1.2E-11 2.6E-16 89.0 11.4 162 9-190 2-182 (184)
126 PHA03132 thymidine kinase; Pro 99.4 2.3E-11 5E-16 99.8 14.1 142 9-154 257-445 (580)
127 PF13207 AAA_17: AAA domain; P 99.4 1.2E-12 2.7E-17 87.7 5.5 34 11-44 1-34 (121)
128 COG4555 NatA ABC-type Na+ tran 99.3 3.5E-12 7.6E-17 90.5 7.3 163 10-183 29-223 (245)
129 COG1125 OpuBA ABC-type proline 99.3 9.3E-12 2E-16 91.4 9.3 162 10-183 28-226 (309)
130 KOG3877 NADH:ubiquinone oxidor 99.3 2.1E-10 4.5E-15 85.1 16.3 172 8-186 70-293 (393)
131 cd02023 UMPK Uridine monophosp 99.3 3.7E-11 8.1E-16 87.4 12.4 34 11-44 1-37 (198)
132 PRK13951 bifunctional shikimat 99.3 4.3E-11 9.4E-16 97.7 13.9 109 10-132 1-112 (488)
133 PRK07429 phosphoribulokinase; 99.3 3.6E-11 7.8E-16 93.4 12.8 138 6-149 5-162 (327)
134 PRK00300 gmk guanylate kinase; 99.3 1.8E-10 3.9E-15 84.3 15.5 165 9-191 5-185 (205)
135 TIGR00455 apsK adenylylsulfate 99.3 1.3E-10 2.8E-15 83.6 14.5 111 7-128 16-132 (184)
136 COG3638 ABC-type phosphate/pho 99.3 9.3E-12 2E-16 90.4 8.0 165 11-183 32-238 (258)
137 PRK07667 uridine kinase; Provi 99.3 1E-11 2.2E-16 90.0 8.2 129 8-147 16-170 (193)
138 COG2274 SunT ABC-type bacterio 99.3 3.1E-12 6.8E-17 108.1 6.2 110 10-123 500-638 (709)
139 PLN02348 phosphoribulokinase 99.3 2.8E-11 6.1E-16 95.0 10.5 29 6-34 46-74 (395)
140 TIGR03263 guanyl_kin guanylate 99.3 4.4E-11 9.5E-16 85.7 10.6 161 10-188 2-178 (180)
141 PRK11860 bifunctional 3-phosph 99.3 1.3E-10 2.9E-15 98.5 15.2 173 9-190 442-655 (661)
142 COG4148 ModC ABC-type molybdat 99.3 1.8E-12 3.8E-17 96.3 3.3 161 8-183 23-219 (352)
143 COG1123 ATPase components of v 99.3 4.4E-12 9.5E-17 102.8 5.7 171 10-188 318-525 (539)
144 COG4608 AppF ABC-type oligopep 99.3 1.4E-12 2.9E-17 96.9 2.5 152 10-184 40-201 (268)
145 COG4175 ProV ABC-type proline/ 99.3 1.6E-11 3.4E-16 92.8 7.5 165 10-183 55-255 (386)
146 cd02024 NRK1 Nicotinamide ribo 99.3 2.8E-11 6.1E-16 86.7 8.4 35 11-45 1-36 (187)
147 PF13238 AAA_18: AAA domain; P 99.3 1.1E-10 2.3E-15 78.8 10.8 106 12-132 1-112 (129)
148 COG1131 CcmA ABC-type multidru 99.3 2.2E-11 4.7E-16 93.7 7.9 109 10-122 32-164 (293)
149 KOG0058 Peptide exporter, ABC 99.3 1.4E-11 3.1E-16 101.8 7.1 139 10-154 495-669 (716)
150 PF01583 APS_kinase: Adenylyls 99.2 1.5E-10 3.2E-15 80.2 10.9 112 8-130 1-118 (156)
151 COG1135 AbcC ABC-type metal io 99.2 3.1E-11 6.8E-16 90.9 8.1 161 10-184 33-233 (339)
152 PRK05537 bifunctional sulfate 99.2 3.8E-10 8.2E-15 93.8 15.1 165 7-190 390-562 (568)
153 PF00485 PRK: Phosphoribulokin 99.2 6.2E-12 1.3E-16 91.3 3.3 24 11-34 1-24 (194)
154 PRK00889 adenylylsulfate kinas 99.2 4.5E-10 9.7E-15 80.2 12.7 109 9-129 4-117 (175)
155 COG1117 PstB ABC-type phosphat 99.2 5.9E-11 1.3E-15 85.1 7.8 114 8-122 32-177 (253)
156 PRK11432 fbpC ferric transport 99.2 9.7E-12 2.1E-16 97.8 4.0 166 10-183 33-227 (351)
157 COG0444 DppD ABC-type dipeptid 99.2 1.7E-10 3.8E-15 87.6 9.9 168 10-185 32-246 (316)
158 PRK11650 ugpC glycerol-3-phosp 99.2 1.3E-11 2.7E-16 97.4 3.9 166 10-183 31-225 (356)
159 PRK15177 Vi polysaccharide exp 99.2 1.1E-10 2.5E-15 85.8 8.4 109 10-122 14-132 (213)
160 PRK09452 potA putrescine/sperm 99.2 1.4E-11 3E-16 97.7 3.7 167 10-184 41-236 (375)
161 PRK11144 modC molybdate transp 99.2 3.3E-11 7.2E-16 95.0 5.7 166 10-183 25-219 (352)
162 TIGR03265 PhnT2 putative 2-ami 99.2 1.5E-10 3.2E-15 91.3 9.2 166 10-183 31-225 (353)
163 COG4604 CeuD ABC-type enteroch 99.2 1.2E-11 2.7E-16 87.5 2.6 112 9-122 27-163 (252)
164 PRK05416 glmZ(sRNA)-inactivati 99.2 3E-09 6.6E-14 81.3 15.7 149 8-190 5-160 (288)
165 PRK13537 nodulation ABC transp 99.2 7.8E-11 1.7E-15 91.3 7.2 161 10-183 34-228 (306)
166 KOG0055 Multidrug/pheromone ex 99.2 6.3E-11 1.4E-15 103.3 6.7 112 10-122 1017-1154(1228)
167 PRK11607 potG putrescine trans 99.2 3.4E-11 7.3E-16 95.6 4.6 166 10-183 46-240 (377)
168 PRK12269 bifunctional cytidyla 99.2 1.5E-09 3.2E-14 93.7 14.8 38 10-47 35-72 (863)
169 cd02027 APSK Adenosine 5'-phos 99.2 2.1E-09 4.4E-14 74.7 13.0 108 11-131 1-116 (149)
170 PRK10851 sulfate/thiosulfate t 99.2 3.4E-11 7.4E-16 94.9 4.5 166 10-183 29-227 (353)
171 PRK11308 dppF dipeptide transp 99.1 2.6E-10 5.7E-15 89.0 9.4 166 10-183 42-245 (327)
172 TIGR03258 PhnT 2-aminoethylpho 99.1 7E-11 1.5E-15 93.3 6.1 167 10-184 32-230 (362)
173 COG1136 SalX ABC-type antimicr 99.1 9E-11 1.9E-15 85.8 6.2 34 92-126 141-174 (226)
174 PRK13546 teichoic acids export 99.1 6.8E-11 1.5E-15 89.7 5.8 172 10-192 51-242 (264)
175 TIGR01188 drrA daunorubicin re 99.1 1.6E-10 3.5E-15 89.4 7.9 109 10-122 20-152 (302)
176 COG0411 LivG ABC-type branched 99.1 5.7E-12 1.2E-16 91.9 -0.2 161 10-183 31-240 (250)
177 PRK05506 bifunctional sulfate 99.1 1.8E-09 3.8E-14 91.5 14.6 159 7-190 458-628 (632)
178 COG0410 LivF ABC-type branched 99.1 4.4E-11 9.6E-16 86.7 4.1 162 10-183 30-227 (237)
179 PRK09270 nucleoside triphospha 99.1 1.4E-09 2.9E-14 81.0 12.1 28 6-33 30-57 (229)
180 COG0529 CysC Adenylylsulfate k 99.1 2.7E-09 5.8E-14 74.3 12.4 163 6-190 20-191 (197)
181 COG4525 TauB ABC-type taurine 99.1 2.3E-10 5E-15 81.1 7.3 110 11-124 33-162 (259)
182 COG4172 ABC-type uncharacteriz 99.1 3.5E-10 7.6E-15 88.2 8.8 172 11-187 315-521 (534)
183 COG0645 Predicted kinase [Gene 99.1 7.8E-09 1.7E-13 71.7 14.5 137 10-154 2-146 (170)
184 PRK05439 pantothenate kinase; 99.1 1.1E-09 2.5E-14 84.1 11.5 40 5-44 82-128 (311)
185 cd02026 PRK Phosphoribulokinas 99.1 9.8E-10 2.1E-14 83.6 10.8 33 11-43 1-36 (273)
186 PF01591 6PF2K: 6-phosphofruct 99.1 5.5E-09 1.2E-13 76.7 14.3 158 7-171 10-191 (222)
187 COG1123 ATPase components of v 99.1 4.2E-10 9.1E-15 91.5 8.9 171 10-187 36-249 (539)
188 PRK13545 tagH teichoic acids e 99.1 9.4E-11 2E-15 95.5 5.2 169 10-189 51-239 (549)
189 TIGR00554 panK_bact pantothena 99.1 8.2E-10 1.8E-14 84.3 10.0 28 6-33 59-86 (290)
190 TIGR02314 ABC_MetN D-methionin 99.1 1.4E-10 3E-15 91.0 5.9 165 10-182 32-230 (343)
191 COG4619 ABC-type uncharacteriz 99.1 8.2E-10 1.8E-14 76.5 8.9 112 10-125 30-164 (223)
192 TIGR01663 PNK-3'Pase polynucle 99.1 5.1E-09 1.1E-13 85.9 15.2 100 7-133 367-469 (526)
193 PRK15079 oligopeptide ABC tran 99.1 6.7E-10 1.4E-14 86.9 9.5 166 10-183 48-252 (331)
194 KOG0055 Multidrug/pheromone ex 99.1 3.7E-10 8E-15 98.6 8.7 112 10-122 380-517 (1228)
195 PRK11000 maltose/maltodextrin 99.1 4.7E-10 1E-14 89.0 8.7 166 10-183 30-224 (369)
196 COG1122 CbiO ABC-type cobalt t 99.1 5.3E-11 1.2E-15 88.2 3.1 167 10-184 31-230 (235)
197 PF07931 CPT: Chloramphenicol 99.1 4.6E-09 1E-13 74.4 12.7 154 10-188 2-173 (174)
198 COG4674 Uncharacterized ABC-ty 99.1 3.8E-11 8.2E-16 84.9 2.0 95 74-183 128-236 (249)
199 PRK04220 2-phosphoglycerate ki 99.1 2E-08 4.4E-13 76.7 16.8 43 7-49 90-132 (301)
200 PRK11174 cysteine/glutathione 99.1 3.2E-10 6.9E-15 95.4 7.8 108 10-122 377-513 (588)
201 TIGR01186 proV glycine betaine 99.1 4.3E-10 9.3E-15 88.8 7.9 165 10-182 20-219 (363)
202 cd02019 NK Nucleoside/nucleoti 99.1 4.4E-10 9.6E-15 67.6 6.1 60 11-120 1-63 (69)
203 cd03237 ABC_RNaseL_inhibitor_d 99.1 2.1E-10 4.6E-15 86.1 5.8 111 10-124 26-145 (246)
204 PRK13651 cobalt transporter AT 99.1 5.7E-10 1.2E-14 86.4 8.1 83 92-182 164-254 (305)
205 PRK09536 btuD corrinoid ABC tr 99.1 1.4E-10 3.1E-15 92.5 4.9 162 10-182 30-228 (402)
206 PRK13536 nodulation factor exp 99.1 1.8E-10 4E-15 90.3 5.3 163 10-183 68-262 (340)
207 TIGR03796 NHPM_micro_ABC1 NHPM 99.1 5.4E-10 1.2E-14 96.0 8.5 109 10-122 506-643 (710)
208 COG0396 sufC Cysteine desulfur 99.1 3.7E-10 8E-15 81.9 6.2 163 10-191 31-243 (251)
209 cd03261 ABC_Org_Solvent_Resist 99.1 1E-09 2.2E-14 82.0 8.8 109 10-122 27-164 (235)
210 PRK13647 cbiO cobalt transport 99.1 3.1E-10 6.8E-15 86.6 5.9 109 10-122 32-166 (274)
211 TIGR03522 GldA_ABC_ATP gliding 99.1 1.2E-09 2.7E-14 84.5 9.3 109 10-122 29-161 (301)
212 PRK11022 dppD dipeptide transp 99.1 1.1E-09 2.4E-14 85.6 8.9 86 93-183 153-244 (326)
213 COG1132 MdlB ABC-type multidru 99.0 3.2E-10 6.9E-15 95.0 6.2 112 10-122 356-493 (567)
214 TIGR02868 CydC thiol reductant 99.0 9.8E-10 2.1E-14 91.4 9.0 115 10-125 362-501 (529)
215 cd02025 PanK Pantothenate kina 99.0 2E-09 4.3E-14 79.5 9.6 23 11-33 1-23 (220)
216 TIGR01288 nodI ATP-binding ABC 99.0 4.2E-10 9E-15 87.2 6.3 109 10-122 31-163 (303)
217 TIGR02315 ABC_phnC phosphonate 99.0 2.4E-09 5.3E-14 80.3 10.1 31 91-122 143-173 (243)
218 cd03263 ABC_subfamily_A The AB 99.0 2.8E-10 6.1E-15 84.2 4.5 110 10-123 29-162 (220)
219 PF08433 KTI12: Chromatin asso 99.0 5.6E-09 1.2E-13 79.2 11.5 132 10-156 2-142 (270)
220 PRK13643 cbiO cobalt transport 99.0 1.3E-09 2.8E-14 83.8 8.3 109 10-122 33-172 (288)
221 PRK11264 putative amino-acid A 99.0 1.2E-09 2.5E-14 82.4 7.8 31 91-122 142-172 (250)
222 cd03219 ABC_Mj1267_LivG_branch 99.0 3E-10 6.6E-15 84.9 4.4 31 91-122 141-171 (236)
223 cd03226 ABC_cobalt_CbiO_domain 99.0 3.4E-10 7.4E-15 82.8 4.5 111 10-124 27-156 (205)
224 TIGR00958 3a01208 Conjugate Tr 99.0 1.5E-10 3.3E-15 99.2 3.0 112 10-122 508-645 (711)
225 PRK10895 lipopolysaccharide AB 99.0 8.2E-10 1.8E-14 82.8 6.6 109 10-122 30-165 (241)
226 cd03256 ABC_PhnC_transporter A 99.0 2.4E-09 5.3E-14 80.2 9.1 31 91-122 142-172 (241)
227 TIGR03375 type_I_sec_LssB type 99.0 1.2E-09 2.5E-14 93.7 8.3 109 10-122 492-629 (694)
228 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.0 4E-10 8.6E-15 83.2 4.7 112 10-125 31-171 (218)
229 PRK11153 metN DL-methionine tr 99.0 3E-10 6.6E-15 89.3 4.3 109 10-122 32-168 (343)
230 TIGR03575 selen_PSTK_euk L-ser 99.0 1.1E-08 2.4E-13 79.7 12.7 34 11-44 1-40 (340)
231 PLN02318 phosphoribulokinase/u 99.0 5.7E-09 1.2E-13 85.9 11.6 37 7-43 63-100 (656)
232 PRK10938 putative molybdenum t 99.0 9.9E-10 2.1E-14 90.5 7.2 31 91-122 133-163 (490)
233 COG4586 ABC-type uncharacteriz 99.0 1.1E-09 2.3E-14 81.4 6.6 109 10-122 51-184 (325)
234 PRK15453 phosphoribulokinase; 99.0 6.9E-09 1.5E-13 78.3 11.0 38 7-44 3-45 (290)
235 TIGR00960 3a0501s02 Type II (G 99.0 4.5E-10 9.9E-15 82.8 4.7 111 10-124 30-168 (216)
236 PRK13637 cbiO cobalt transport 99.0 2.1E-09 4.5E-14 82.6 8.4 109 10-122 34-172 (287)
237 PRK09473 oppD oligopeptide tra 99.0 4.6E-09 1E-13 82.2 10.4 85 94-183 162-252 (330)
238 cd03258 ABC_MetN_methionine_tr 99.0 1.6E-09 3.4E-14 80.8 7.5 110 10-123 32-169 (233)
239 TIGR02142 modC_ABC molybdenum 99.0 6.8E-10 1.5E-14 87.7 5.7 109 10-122 24-159 (354)
240 PRK10619 histidine/lysine/argi 99.0 1.5E-09 3.2E-14 82.2 7.3 31 91-122 150-180 (257)
241 PF00625 Guanylate_kin: Guanyl 99.0 4.3E-09 9.4E-14 75.6 9.3 163 9-190 2-182 (183)
242 TIGR03797 NHPM_micro_ABC2 NHPM 99.0 2E-09 4.3E-14 92.2 8.7 109 10-122 480-616 (686)
243 cd03224 ABC_TM1139_LivF_branch 99.0 1.7E-09 3.7E-14 80.1 7.3 110 10-123 27-161 (222)
244 TIGR02673 FtsE cell division A 99.0 4.7E-10 1E-14 82.6 4.2 111 10-124 29-167 (214)
245 PRK09493 glnQ glutamine ABC tr 99.0 1.6E-09 3.6E-14 81.1 7.2 109 10-122 28-164 (240)
246 TIGR03415 ABC_choXWV_ATP choli 99.0 1.7E-10 3.6E-15 91.5 2.0 165 10-182 51-254 (382)
247 cd03235 ABC_Metallic_Cations A 99.0 5.7E-10 1.2E-14 82.1 4.6 112 10-125 26-163 (213)
248 cd03296 ABC_CysA_sulfate_impor 99.0 5.1E-10 1.1E-14 83.8 4.4 110 10-123 29-165 (239)
249 cd03214 ABC_Iron-Siderophores_ 99.0 2.2E-10 4.8E-15 82.1 2.2 102 10-124 26-127 (180)
250 TIGR03005 ectoine_ehuA ectoine 99.0 3.2E-09 7E-14 80.1 8.7 32 92-124 145-176 (252)
251 PRK13641 cbiO cobalt transport 99.0 1.6E-09 3.4E-14 83.4 7.0 109 10-122 34-173 (287)
252 PRK13638 cbiO cobalt transport 99.0 1.9E-09 4E-14 82.3 7.4 109 10-122 28-164 (271)
253 PRK13646 cbiO cobalt transport 99.0 6.2E-09 1.4E-13 80.0 10.3 109 10-122 34-173 (286)
254 cd03231 ABC_CcmA_heme_exporter 99.0 1.7E-09 3.7E-14 78.9 6.9 112 10-125 27-156 (201)
255 PRK14250 phosphate ABC transpo 99.0 4.7E-09 1E-13 78.7 9.2 109 10-122 30-159 (241)
256 PRK10575 iron-hydroxamate tran 99.0 1.4E-09 3E-14 82.7 6.3 110 10-123 38-176 (265)
257 cd02028 UMPK_like Uridine mono 99.0 2.5E-09 5.4E-14 76.6 7.3 35 11-45 1-40 (179)
258 PRK10070 glycine betaine trans 99.0 3E-09 6.4E-14 85.0 8.4 109 10-122 55-192 (400)
259 PRK11247 ssuB aliphatic sulfon 99.0 6.5E-10 1.4E-14 84.1 4.5 106 10-122 39-161 (257)
260 TIGR03410 urea_trans_UrtE urea 99.0 6E-09 1.3E-13 77.6 9.6 109 10-122 27-159 (230)
261 PF00005 ABC_tran: ABC transpo 99.0 9.9E-11 2.1E-15 80.1 -0.0 109 10-122 12-136 (137)
262 PRK13636 cbiO cobalt transport 99.0 5.5E-09 1.2E-13 80.2 9.5 109 10-122 33-169 (283)
263 TIGR01166 cbiO cobalt transpor 99.0 1.3E-09 2.7E-14 78.9 5.6 113 10-126 19-159 (190)
264 TIGR02769 nickel_nikE nickel i 99.0 6E-09 1.3E-13 79.2 9.5 32 91-123 148-179 (265)
265 cd03292 ABC_FtsE_transporter F 99.0 1.3E-09 2.8E-14 80.3 5.7 111 10-124 28-166 (214)
266 PRK13631 cbiO cobalt transport 99.0 2.8E-09 6E-14 83.1 7.8 30 92-122 175-204 (320)
267 cd03259 ABC_Carb_Solutes_like 99.0 8.5E-10 1.8E-14 81.2 4.7 111 10-124 27-160 (213)
268 PLN02772 guanylate kinase 99.0 2.5E-08 5.5E-13 78.5 13.0 163 8-189 134-317 (398)
269 PRK10771 thiQ thiamine transpo 99.0 1.1E-09 2.3E-14 81.8 5.1 110 10-123 26-158 (232)
270 PRK11124 artP arginine transpo 99.0 2.5E-09 5.4E-14 80.3 7.1 109 10-122 29-169 (242)
271 cd03225 ABC_cobalt_CbiO_domain 99.0 1.5E-09 3.2E-14 79.8 5.8 112 10-125 28-165 (211)
272 cd03260 ABC_PstB_phosphate_tra 99.0 1.8E-09 3.8E-14 80.3 6.3 32 92-124 140-171 (227)
273 PRK13639 cbiO cobalt transport 98.9 9E-10 2E-14 84.2 4.6 109 10-122 29-165 (275)
274 cd03294 ABC_Pro_Gly_Bertaine T 98.9 2.7E-09 5.8E-14 81.3 7.2 110 10-123 51-189 (269)
275 COG4152 ABC-type uncharacteriz 98.9 6E-09 1.3E-13 76.4 8.3 109 10-122 29-158 (300)
276 COG3840 ThiQ ABC-type thiamine 98.9 3.1E-09 6.7E-14 74.6 6.6 115 10-130 26-165 (231)
277 cd03293 ABC_NrtD_SsuB_transpor 98.9 3E-09 6.5E-14 78.7 7.0 110 10-123 31-160 (220)
278 PRK13652 cbiO cobalt transport 98.9 2.7E-09 5.8E-14 81.7 6.9 109 10-122 31-165 (277)
279 TIGR02770 nickel_nikD nickel i 98.9 1E-08 2.3E-13 76.3 9.9 32 91-123 123-154 (230)
280 cd03222 ABC_RNaseL_inhibitor T 98.9 2.9E-10 6.3E-15 81.0 1.5 75 10-125 26-102 (177)
281 cd03295 ABC_OpuCA_Osmoprotecti 98.9 1.6E-09 3.5E-14 81.3 5.5 109 10-122 28-163 (242)
282 cd03228 ABCC_MRP_Like The MRP 98.9 5.5E-10 1.2E-14 79.4 2.8 98 10-124 29-126 (171)
283 PRK12337 2-phosphoglycerate ki 98.9 4.4E-07 9.6E-12 73.0 19.4 41 7-47 253-293 (475)
284 PF06414 Zeta_toxin: Zeta toxi 98.9 2.4E-08 5.2E-13 72.8 11.4 116 6-132 12-141 (199)
285 PRK13634 cbiO cobalt transport 98.9 4.5E-09 9.6E-14 81.0 7.9 109 10-122 34-173 (290)
286 COG4988 CydD ABC-type transpor 98.9 5.5E-09 1.2E-13 85.0 8.7 109 10-122 348-484 (559)
287 PLN03232 ABC transporter C fam 98.9 2.6E-09 5.7E-14 97.9 7.6 112 10-122 1263-1399(1495)
288 PRK10253 iron-enterobactin tra 98.9 5.7E-09 1.2E-13 79.4 8.3 110 10-123 34-172 (265)
289 PRK13538 cytochrome c biogenes 98.9 1E-09 2.2E-14 80.3 4.0 112 10-125 28-160 (204)
290 cd03246 ABCC_Protease_Secretio 98.9 4.9E-10 1.1E-14 79.8 2.3 96 10-125 29-127 (173)
291 PTZ00265 multidrug resistance 98.9 2E-09 4.3E-14 98.2 6.7 112 10-122 1195-1386(1466)
292 PRK13645 cbiO cobalt transport 98.9 5.7E-09 1.2E-13 80.3 8.3 109 10-122 38-178 (289)
293 COG4133 CcmA ABC-type transpor 98.9 1.1E-09 2.4E-14 77.1 3.9 111 11-125 30-161 (209)
294 COG1137 YhbG ABC-type (unclass 98.9 3.1E-10 6.8E-15 80.6 1.1 157 10-183 31-229 (243)
295 cd03298 ABC_ThiQ_thiamine_tran 98.9 1.8E-09 4E-14 79.3 5.3 111 10-124 25-158 (211)
296 TIGR01193 bacteriocin_ABC ABC- 98.9 5E-09 1.1E-13 90.0 8.7 109 10-122 501-639 (708)
297 PRK13548 hmuV hemin importer A 98.9 2.2E-09 4.7E-14 81.4 5.8 110 10-123 29-169 (258)
298 PRK11300 livG leucine/isoleuci 98.9 3.7E-09 8E-14 79.9 7.0 31 91-122 151-181 (255)
299 PRK11831 putative ABC transpor 98.9 7.2E-09 1.6E-13 79.0 8.6 31 91-122 141-171 (269)
300 KOG0057 Mitochondrial Fe/S clu 98.9 8.6E-09 1.9E-13 83.2 9.3 112 10-122 379-515 (591)
301 PRK10790 putative multidrug tr 98.9 3.5E-09 7.6E-14 89.2 7.5 112 10-122 368-504 (592)
302 TIGR02857 CydD thiol reductant 98.9 4.7E-09 1E-13 87.4 8.1 112 10-125 349-489 (529)
303 TIGR02211 LolD_lipo_ex lipopro 98.9 1.6E-09 3.5E-14 80.2 4.8 111 10-124 32-171 (221)
304 cd03264 ABC_drug_resistance_li 98.9 2E-09 4.4E-14 79.1 5.3 110 11-124 27-160 (211)
305 PRK13649 cbiO cobalt transport 98.9 3.1E-09 6.7E-14 81.5 6.5 109 10-122 34-173 (280)
306 PLN03130 ABC transporter C fam 98.9 2.6E-09 5.6E-14 98.3 7.0 112 10-122 1266-1402(1622)
307 PRK09984 phosphonate/organopho 98.9 1.4E-08 3E-13 77.1 10.0 32 91-123 150-181 (262)
308 PRK15439 autoinducer 2 ABC tra 98.9 9.9E-10 2.2E-14 90.9 3.9 108 10-122 38-168 (510)
309 cd03269 ABC_putative_ATPase Th 98.9 8.6E-10 1.9E-14 81.0 3.2 111 10-124 27-158 (210)
310 PRK09544 znuC high-affinity zi 98.9 2.3E-09 4.9E-14 80.9 5.5 108 10-122 31-148 (251)
311 PRK10418 nikD nickel transport 98.9 9.4E-09 2E-13 77.7 8.9 34 91-125 138-171 (254)
312 TIGR03771 anch_rpt_ABC anchore 98.9 2.5E-09 5.4E-14 79.3 5.6 109 10-122 7-141 (223)
313 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.9 1.7E-09 3.7E-14 80.2 4.8 111 10-124 49-172 (224)
314 cd03301 ABC_MalK_N The N-termi 98.9 5.1E-09 1.1E-13 77.1 7.2 112 10-125 27-161 (213)
315 PRK10908 cell division protein 98.9 3.8E-09 8.2E-14 78.3 6.5 111 10-124 29-167 (222)
316 cd03289 ABCC_CFTR2 The CFTR su 98.9 9E-10 1.9E-14 84.0 3.2 111 10-122 31-166 (275)
317 TIGR01187 potA spermidine/putr 98.9 4.8E-09 1E-13 82.0 7.3 162 14-183 1-191 (325)
318 PRK11701 phnK phosphonate C-P 98.9 6.7E-09 1.5E-13 78.7 7.9 32 91-123 149-180 (258)
319 cd03297 ABC_ModC_molybdenum_tr 98.9 1.3E-09 2.9E-14 80.2 3.9 112 10-125 24-162 (214)
320 cd03268 ABC_BcrA_bacitracin_re 98.9 2.1E-09 4.6E-14 78.8 5.0 110 10-124 27-156 (208)
321 TIGR01846 type_I_sec_HlyB type 98.9 4.9E-09 1.1E-13 89.9 7.8 110 10-123 484-622 (694)
322 PRK13541 cytochrome c biogenes 98.9 9.4E-10 2E-14 79.9 3.0 112 10-125 27-154 (195)
323 PRK13650 cbiO cobalt transport 98.9 4.8E-09 1E-13 80.4 6.9 109 10-122 34-168 (279)
324 TIGR02203 MsbA_lipidA lipid A 98.9 1E-08 2.2E-13 86.1 9.5 113 10-123 359-498 (571)
325 TIGR03411 urea_trans_UrtD urea 98.9 4.1E-09 8.8E-14 79.1 6.4 31 91-122 141-171 (242)
326 TIGR03873 F420-0_ABC_ATP propo 98.9 3.7E-09 8.1E-14 80.0 6.2 110 10-123 28-166 (256)
327 PRK13540 cytochrome c biogenes 98.9 5.4E-09 1.2E-13 76.2 6.9 112 10-125 28-158 (200)
328 TIGR01194 cyc_pep_trnsptr cycl 98.9 5E-09 1.1E-13 87.6 7.5 108 10-123 369-499 (555)
329 PRK11176 lipid transporter ATP 98.9 7.2E-10 1.6E-14 93.2 2.5 109 10-122 370-508 (582)
330 cd03266 ABC_NatA_sodium_export 98.9 4.8E-09 1E-13 77.4 6.6 112 10-125 32-167 (218)
331 PRK09700 D-allose transporter 98.9 1.8E-09 3.9E-14 89.4 4.6 109 10-122 32-173 (510)
332 cd03265 ABC_DrrA DrrA is the A 98.9 6.2E-09 1.3E-13 77.0 7.0 110 10-123 27-160 (220)
333 TIGR00972 3a0107s01c2 phosphat 98.9 1.1E-08 2.4E-13 77.0 8.5 31 92-123 143-173 (247)
334 cd03262 ABC_HisP_GlnQ_permease 98.9 7.3E-09 1.6E-13 76.2 7.3 111 10-124 27-165 (213)
335 TIGR03740 galliderm_ABC gallid 98.9 6.4E-10 1.4E-14 82.4 1.6 108 10-122 27-152 (223)
336 PRK15112 antimicrobial peptide 98.9 5.5E-09 1.2E-13 79.5 6.7 109 10-122 40-177 (267)
337 cd03223 ABCD_peroxisomal_ALDP 98.9 1.6E-09 3.5E-14 76.6 3.6 95 10-125 28-122 (166)
338 cd03218 ABC_YhbG The ABC trans 98.9 2.9E-09 6.4E-14 79.3 5.1 109 10-122 27-161 (232)
339 COG4598 HisP ABC-type histidin 98.9 7.1E-09 1.5E-13 72.8 6.6 27 96-123 155-181 (256)
340 PRK13657 cyclic beta-1,2-gluca 98.9 9E-09 2E-13 86.7 8.6 109 10-122 362-499 (588)
341 TIGR01277 thiQ thiamine ABC tr 98.9 2.7E-09 5.8E-14 78.6 4.7 111 10-124 25-158 (213)
342 TIGR01184 ntrCD nitrate transp 98.9 1.4E-09 3.1E-14 80.9 3.3 109 10-122 12-142 (230)
343 cd03247 ABCC_cytochrome_bd The 98.9 1.1E-09 2.4E-14 78.4 2.5 96 10-123 29-127 (178)
344 PRK11614 livF leucine/isoleuci 98.9 4E-09 8.7E-14 78.9 5.6 109 10-122 32-165 (237)
345 PRK10522 multidrug transporter 98.9 5.6E-09 1.2E-13 87.2 7.0 106 10-122 350-477 (547)
346 COG4161 ArtP ABC-type arginine 98.9 3.5E-08 7.5E-13 68.2 9.5 38 91-129 135-176 (242)
347 PRK15439 autoinducer 2 ABC tra 98.9 3.5E-09 7.5E-14 87.7 5.6 31 91-122 401-431 (510)
348 cd03245 ABCC_bacteriocin_expor 98.9 4.5E-09 9.6E-14 77.7 5.7 110 10-123 31-169 (220)
349 TIGR00957 MRP_assoc_pro multi 98.9 1.7E-09 3.8E-14 99.2 4.2 112 10-122 1313-1449(1522)
350 cd03216 ABC_Carb_Monos_I This 98.9 3.6E-09 7.7E-14 74.7 4.9 87 10-125 27-113 (163)
351 PRK13648 cbiO cobalt transport 98.9 9.2E-09 2E-13 78.4 7.5 109 10-122 36-170 (269)
352 COG4987 CydC ABC-type transpor 98.9 2.8E-08 6.1E-13 80.2 10.4 113 10-123 365-503 (573)
353 cd03229 ABC_Class3 This class 98.9 5E-10 1.1E-14 80.2 0.5 102 10-124 27-130 (178)
354 COG1119 ModF ABC-type molybden 98.9 1.5E-08 3.3E-13 74.3 8.2 28 94-122 172-199 (257)
355 PRK10261 glutathione transport 98.9 1.1E-08 2.4E-13 86.5 8.7 31 91-122 166-196 (623)
356 PHA03136 thymidine kinase; Pro 98.9 3.7E-07 8E-12 71.5 16.2 45 110-154 190-234 (378)
357 PRK13547 hmuV hemin importer A 98.9 1.2E-08 2.5E-13 77.9 7.9 33 91-124 143-184 (272)
358 PRK11629 lolD lipoprotein tran 98.9 8E-09 1.7E-13 77.1 6.9 111 10-124 36-175 (233)
359 TIGR03864 PQQ_ABC_ATP ABC tran 98.9 2.9E-09 6.4E-14 79.6 4.6 109 10-122 28-160 (236)
360 COG4181 Predicted ABC-type tra 98.9 7.7E-09 1.7E-13 72.0 6.2 110 11-127 38-179 (228)
361 PRK10261 glutathione transport 98.9 5.2E-09 1.1E-13 88.6 6.5 87 91-182 461-553 (623)
362 PRK13632 cbiO cobalt transport 98.9 3.5E-09 7.6E-14 80.8 5.0 109 10-122 36-170 (271)
363 cd03230 ABC_DR_subfamily_A Thi 98.9 7.4E-10 1.6E-14 78.9 1.1 96 10-125 27-126 (173)
364 COG4618 ArpD ABC-type protease 98.9 8.7E-09 1.9E-13 82.6 7.2 111 11-122 364-500 (580)
365 PRK13635 cbiO cobalt transport 98.8 3.6E-09 7.8E-14 81.0 4.9 109 10-122 34-168 (279)
366 PRK13644 cbiO cobalt transport 98.8 7E-09 1.5E-13 79.3 6.4 109 10-122 29-164 (274)
367 PHA00729 NTP-binding motif con 98.8 4.6E-08 1E-12 71.8 10.3 112 8-133 16-140 (226)
368 TIGR03608 L_ocin_972_ABC putat 98.8 2.5E-09 5.4E-14 78.3 3.8 111 10-124 25-164 (206)
369 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.8 2E-09 4.3E-14 74.4 3.1 75 10-125 27-101 (144)
370 PRK11160 cysteine/glutathione 98.8 5.6E-09 1.2E-13 87.7 6.3 109 10-122 367-503 (574)
371 PRK13539 cytochrome c biogenes 98.8 3.5E-09 7.7E-14 77.6 4.5 110 10-124 29-157 (207)
372 TIGR01189 ccmA heme ABC export 98.8 2.6E-09 5.6E-14 77.7 3.7 34 91-125 125-158 (198)
373 PRK14259 phosphate ABC transpo 98.8 1.4E-08 3.1E-13 77.4 7.8 31 92-123 153-183 (269)
374 PRK10419 nikE nickel transport 98.8 1.3E-08 2.9E-13 77.5 7.7 33 91-124 149-181 (268)
375 PRK15064 ABC transporter ATP-b 98.8 5.3E-09 1.2E-13 87.0 5.9 109 10-122 346-466 (530)
376 PRK11248 tauB taurine transpor 98.8 3.2E-09 6.9E-14 80.3 4.2 109 10-122 28-156 (255)
377 cd03254 ABCC_Glucan_exporter_l 98.8 6.7E-09 1.4E-13 77.3 5.8 109 10-122 30-167 (229)
378 PRK14247 phosphate ABC transpo 98.8 5.6E-09 1.2E-13 78.7 5.3 31 91-122 144-174 (250)
379 cd03244 ABCC_MRP_domain2 Domai 98.8 1.9E-09 4.1E-14 79.8 2.5 111 10-124 31-169 (221)
380 PRK15093 antimicrobial peptide 98.8 2.6E-08 5.6E-13 78.1 9.0 85 93-182 158-248 (330)
381 PRK10584 putative ABC transpor 98.8 5.4E-09 1.2E-13 77.7 4.9 110 10-123 37-175 (228)
382 PRK15134 microcin C ABC transp 98.8 9.9E-09 2.2E-13 85.4 7.0 87 91-182 423-515 (529)
383 PRK14268 phosphate ABC transpo 98.8 1.4E-08 3E-13 76.9 7.2 31 92-123 153-183 (258)
384 COG4167 SapF ABC-type antimicr 98.8 9.7E-09 2.1E-13 72.3 5.7 108 11-122 41-177 (267)
385 COG3709 Uncharacterized compon 98.8 2.4E-07 5.2E-12 63.8 12.3 160 10-189 6-181 (192)
386 cd03257 ABC_NikE_OppD_transpor 98.8 1.7E-08 3.6E-13 75.1 7.5 33 91-124 143-175 (228)
387 PRK14267 phosphate ABC transpo 98.8 6.4E-09 1.4E-13 78.5 5.3 30 92-122 148-177 (253)
388 COG2884 FtsE Predicted ATPase 98.8 8.2E-09 1.8E-13 72.9 5.3 111 11-125 30-168 (223)
389 PRK10744 pstB phosphate transp 98.8 2.5E-08 5.5E-13 75.6 8.5 32 91-123 154-185 (260)
390 PRK10247 putative ABC transpor 98.8 1E-08 2.2E-13 76.1 6.2 110 10-123 34-166 (225)
391 TIGR03719 ABC_ABC_ChvD ATP-bin 98.8 5.8E-09 1.3E-13 87.2 5.3 109 10-122 349-471 (552)
392 TIGR02204 MsbA_rel ABC transpo 98.8 2.3E-08 5E-13 84.1 8.9 110 10-123 367-505 (576)
393 PRK14242 phosphate transporter 98.8 1.5E-08 3.3E-13 76.5 7.1 30 92-122 148-177 (253)
394 cd03236 ABC_RNaseL_inhibitor_d 98.8 1.2E-08 2.7E-13 77.0 6.5 32 91-123 137-168 (255)
395 cd03250 ABCC_MRP_domain1 Domai 98.8 9.6E-10 2.1E-14 80.4 0.5 111 10-124 32-157 (204)
396 cd03215 ABC_Carb_Monos_II This 98.8 1.9E-09 4.2E-14 77.4 2.0 100 10-124 27-134 (182)
397 TIGR03269 met_CoM_red_A2 methy 98.8 1.3E-08 2.7E-13 84.6 7.0 31 91-122 425-455 (520)
398 KOG3308 Uncharacterized protei 98.8 3.4E-08 7.4E-13 70.2 8.0 120 8-133 3-149 (225)
399 PRK13543 cytochrome c biogenes 98.8 1.4E-08 3E-13 74.9 6.3 112 10-125 38-168 (214)
400 PRK10982 galactose/methyl gala 98.8 4E-09 8.6E-14 87.0 3.7 109 10-122 25-162 (491)
401 TIGR02323 CP_lyasePhnK phospho 98.8 2.5E-08 5.4E-13 75.3 7.8 31 91-122 146-176 (253)
402 cd03213 ABCG_EPDR ABCG transpo 98.8 1.9E-09 4.1E-14 78.3 1.5 100 10-124 36-141 (194)
403 PRK13640 cbiO cobalt transport 98.8 2.8E-08 6E-13 76.3 7.9 109 10-122 34-171 (282)
404 PRK14248 phosphate ABC transpo 98.8 2.1E-08 4.6E-13 76.4 7.2 32 91-123 162-193 (268)
405 PRK13409 putative ATPase RIL; 98.8 4.5E-09 9.8E-14 88.1 3.8 109 10-122 366-481 (590)
406 PRK10789 putative multidrug tr 98.8 2.4E-08 5.1E-13 83.9 8.0 109 10-122 342-479 (569)
407 cd03251 ABCC_MsbA MsbA is an e 98.8 2.3E-08 5.1E-13 74.6 7.2 109 10-122 29-166 (234)
408 PRK15064 ABC transporter ATP-b 98.8 1.4E-08 3E-13 84.5 6.5 31 91-122 153-183 (530)
409 cd03233 ABC_PDR_domain1 The pl 98.8 3.2E-09 7E-14 77.5 2.4 109 10-125 34-149 (202)
410 PRK11288 araG L-arabinose tran 98.8 4.7E-09 1E-13 86.7 3.6 31 91-122 394-424 (501)
411 PRK14256 phosphate ABC transpo 98.8 1.9E-08 4.1E-13 76.0 6.6 31 91-122 146-176 (252)
412 PTZ00243 ABC transporter; Prov 98.8 4.1E-09 8.9E-14 96.8 3.5 112 10-122 1337-1474(1560)
413 PRK15056 manganese/iron transp 98.8 6.8E-09 1.5E-13 79.3 4.2 109 10-122 34-170 (272)
414 PRK13549 xylose transporter AT 98.8 7E-09 1.5E-13 85.8 4.5 31 91-122 403-433 (506)
415 PF03668 ATP_bind_2: P-loop AT 98.8 8.5E-07 1.8E-11 67.0 15.0 29 10-39 2-30 (284)
416 cd03369 ABCC_NFT1 Domain 2 of 98.8 1.8E-08 3.8E-13 73.9 6.0 103 10-124 35-155 (207)
417 PRK11231 fecE iron-dicitrate t 98.8 2.6E-08 5.6E-13 75.3 7.0 109 10-122 29-166 (255)
418 PRK14270 phosphate ABC transpo 98.8 2.7E-08 6E-13 75.0 7.1 32 91-123 145-176 (251)
419 PRK10762 D-ribose transporter 98.8 7.7E-09 1.7E-13 85.5 4.4 109 10-122 31-169 (501)
420 PLN03073 ABC transporter F fam 98.8 1.4E-08 3E-13 86.9 5.9 108 10-122 536-655 (718)
421 cd03252 ABCC_Hemolysin The ABC 98.8 1.2E-08 2.7E-13 76.2 5.0 109 10-122 29-166 (237)
422 cd03232 ABC_PDR_domain2 The pl 98.8 3.3E-09 7.2E-14 76.8 1.9 99 10-124 34-138 (192)
423 cd02029 PRK_like Phosphoribulo 98.8 8.5E-08 1.8E-12 71.9 9.3 35 11-45 1-40 (277)
424 COG1129 MglA ABC-type sugar tr 98.8 1.1E-08 2.4E-13 82.8 4.9 144 10-170 35-219 (500)
425 cd03253 ABCC_ATM1_transporter 98.8 1.6E-08 3.6E-13 75.5 5.6 109 10-122 28-165 (236)
426 TIGR02982 heterocyst_DevA ABC 98.8 3.6E-08 7.8E-13 72.9 7.4 111 10-124 32-171 (220)
427 PRK14273 phosphate ABC transpo 98.7 3.9E-08 8.5E-13 74.3 7.6 31 91-122 148-178 (254)
428 PRK14257 phosphate ABC transpo 98.7 1.7E-08 3.7E-13 79.0 5.7 82 92-182 224-313 (329)
429 PRK11819 putative ABC transpor 98.7 3.9E-08 8.4E-13 82.3 8.3 109 10-122 351-473 (556)
430 COG4639 Predicted kinase [Gene 98.7 1.9E-07 4.1E-12 63.9 10.0 113 9-132 2-117 (168)
431 PRK14271 phosphate ABC transpo 98.7 6.8E-08 1.5E-12 73.9 8.9 31 91-122 161-191 (276)
432 TIGR03269 met_CoM_red_A2 methy 98.7 3.8E-08 8.2E-13 81.8 8.1 31 91-122 166-196 (520)
433 PRK14263 phosphate ABC transpo 98.7 4.7E-08 1E-12 74.2 8.0 30 92-122 148-177 (261)
434 PRK13409 putative ATPase RIL; 98.7 2.3E-08 5.1E-13 83.9 6.8 31 91-122 210-240 (590)
435 cd03267 ABC_NatA_like Similar 98.7 7.1E-09 1.5E-13 77.5 3.4 110 10-123 48-182 (236)
436 PRK14251 phosphate ABC transpo 98.7 3.3E-08 7.2E-13 74.6 7.0 31 91-122 145-175 (251)
437 PRK13633 cobalt transporter AT 98.7 2.2E-08 4.7E-13 76.8 6.1 109 10-122 37-172 (280)
438 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.7 2E-08 4.3E-13 75.2 5.7 109 10-122 30-167 (238)
439 KOG0061 Transporter, ABC super 98.7 8.8E-08 1.9E-12 80.7 10.0 115 10-125 57-201 (613)
440 PRK10762 D-ribose transporter 98.7 2.7E-08 5.9E-13 82.3 6.8 31 91-122 393-423 (501)
441 PRK15134 microcin C ABC transp 98.7 1.2E-07 2.5E-12 79.1 10.5 31 91-122 154-184 (529)
442 TIGR01257 rim_protein retinal- 98.7 1.7E-08 3.6E-13 93.9 5.9 109 10-122 1966-2098(2272)
443 TIGR02324 CP_lyasePhnL phospho 98.7 5.8E-08 1.3E-12 72.0 7.8 34 91-125 147-180 (224)
444 cd03248 ABCC_TAP TAP, the Tran 98.7 6.7E-08 1.5E-12 71.7 8.2 111 10-124 41-180 (226)
445 PRK14262 phosphate ABC transpo 98.7 7E-08 1.5E-12 72.8 8.3 31 91-122 144-174 (250)
446 PRK14245 phosphate ABC transpo 98.7 1.1E-07 2.5E-12 71.6 9.4 32 91-123 144-175 (250)
447 cd03288 ABCC_SUR2 The SUR doma 98.7 1.5E-08 3.3E-13 76.7 4.6 29 93-122 156-184 (257)
448 cd03238 ABC_UvrA The excision 98.7 2.8E-08 6E-13 70.8 5.6 96 10-125 22-120 (176)
449 PRK09700 D-allose transporter 98.7 2.5E-08 5.5E-13 82.6 6.3 31 91-122 407-437 (510)
450 cd00267 ABC_ATPase ABC (ATP-bi 98.7 7.6E-09 1.6E-13 72.5 2.7 86 10-125 26-111 (157)
451 PRK03695 vitamin B12-transport 98.7 4.8E-08 1E-12 73.6 7.0 108 10-122 23-161 (248)
452 PRK14265 phosphate ABC transpo 98.7 4.9E-08 1.1E-12 74.6 7.2 31 91-122 159-189 (274)
453 PRK13549 xylose transporter AT 98.7 1.5E-08 3.3E-13 83.8 4.7 109 10-122 32-171 (506)
454 TIGR01271 CFTR_protein cystic 98.7 2.7E-08 5.8E-13 91.4 6.6 112 10-122 1246-1381(1490)
455 cd03290 ABCC_SUR1_N The SUR do 98.7 6.1E-08 1.3E-12 71.6 7.3 33 91-124 138-170 (218)
456 PRK14274 phosphate ABC transpo 98.7 6.9E-08 1.5E-12 73.2 7.8 31 91-122 153-183 (259)
457 PRK14275 phosphate ABC transpo 98.7 6.4E-08 1.4E-12 74.4 7.7 31 91-122 180-210 (286)
458 PRK10636 putative ABC transpor 98.7 1.9E-08 4.1E-13 85.4 5.1 109 10-122 339-458 (638)
459 COG3845 ABC-type uncharacteriz 98.7 4.2E-08 9.1E-13 78.4 6.6 147 10-170 31-214 (501)
460 TIGR00968 3a0106s01 sulfate AB 98.7 5.8E-08 1.3E-12 72.7 7.1 109 10-122 27-158 (237)
461 TIGR03719 ABC_ABC_ChvD ATP-bin 98.7 2.9E-07 6.3E-12 77.1 11.8 31 91-122 159-189 (552)
462 COG2074 2-phosphoglycerate kin 98.7 6.1E-06 1.3E-10 61.0 16.9 46 6-51 86-131 (299)
463 PRK11288 araG L-arabinose tran 98.7 3E-08 6.6E-13 82.0 5.8 109 10-122 31-168 (501)
464 PRK13642 cbiO cobalt transport 98.7 6.7E-08 1.4E-12 74.0 7.2 109 10-122 34-168 (277)
465 cd03299 ABC_ModC_like Archeal 98.7 5.9E-08 1.3E-12 72.5 6.8 109 10-122 26-157 (235)
466 cd03300 ABC_PotA_N PotA is an 98.7 7.2E-08 1.6E-12 71.9 7.2 109 10-122 27-158 (232)
467 PRK14238 phosphate transporter 98.7 4.9E-08 1.1E-12 74.5 6.4 31 91-122 165-195 (271)
468 PRK14269 phosphate ABC transpo 98.7 7.1E-08 1.5E-12 72.6 7.2 30 92-122 141-170 (246)
469 TIGR01192 chvA glucan exporter 98.7 5.7E-08 1.2E-12 81.8 7.3 109 10-122 362-499 (585)
470 TIGR01842 type_I_sec_PrtD type 98.7 8.9E-09 1.9E-13 86.0 2.4 111 10-124 345-484 (544)
471 COG1072 CoaA Panthothenate kin 98.7 2.1E-08 4.6E-13 74.8 3.9 29 5-33 78-106 (283)
472 PRK10636 putative ABC transpor 98.7 2.3E-08 4.9E-13 84.9 4.6 31 91-122 147-177 (638)
473 PRK14253 phosphate ABC transpo 98.7 7.3E-08 1.6E-12 72.6 6.7 30 92-122 144-173 (249)
474 PLN03232 ABC transporter C fam 98.7 5.1E-08 1.1E-12 89.6 6.9 109 10-122 644-768 (1495)
475 PRK14246 phosphate ABC transpo 98.7 1.2E-07 2.7E-12 71.8 7.9 32 91-123 151-182 (257)
476 TIGR02633 xylG D-xylose ABC tr 98.7 4.1E-08 8.8E-13 81.2 5.7 109 10-122 28-169 (500)
477 PRK14252 phosphate ABC transpo 98.7 1.8E-07 3.9E-12 71.2 8.9 31 91-122 159-189 (265)
478 COG0488 Uup ATPase components 98.7 3.1E-08 6.7E-13 81.6 4.8 108 10-122 349-467 (530)
479 PRK14237 phosphate transporter 98.6 2.4E-07 5.2E-12 70.6 9.4 30 92-122 162-191 (267)
480 PRK14239 phosphate transporter 98.6 1.5E-07 3.2E-12 71.0 8.2 31 91-122 146-176 (252)
481 PRK14261 phosphate ABC transpo 98.6 1.1E-07 2.4E-12 71.8 7.2 32 91-123 147-178 (253)
482 TIGR01257 rim_protein retinal- 98.6 4.4E-08 9.5E-13 91.2 5.9 109 10-122 957-1089(2272)
483 cd03217 ABC_FeS_Assembly ABC-t 98.6 1E-08 2.2E-13 74.7 1.5 99 10-122 27-132 (200)
484 COG4778 PhnL ABC-type phosphon 98.6 1.3E-07 2.9E-12 65.8 6.8 114 10-125 38-183 (235)
485 COG0488 Uup ATPase components 98.6 1E-07 2.2E-12 78.6 7.2 31 91-122 151-181 (530)
486 PRK14235 phosphate transporter 98.6 9.7E-08 2.1E-12 72.7 6.6 31 91-122 161-191 (267)
487 PRK11147 ABC transporter ATPas 98.6 1.3E-08 2.8E-13 86.4 2.0 108 10-122 346-468 (635)
488 cd03234 ABCG_White The White s 98.6 1.5E-08 3.2E-13 75.3 2.1 33 91-124 141-173 (226)
489 TIGR01978 sufC FeS assembly AT 98.6 6.6E-08 1.4E-12 72.6 5.5 29 93-122 144-172 (243)
490 KOG0056 Heavy metal exporter H 98.6 2.8E-07 6.2E-12 74.0 9.2 112 10-122 565-702 (790)
491 PRK11819 putative ABC transpor 98.6 4.8E-08 1.1E-12 81.7 5.1 31 91-122 161-191 (556)
492 PRK14272 phosphate ABC transpo 98.6 2.7E-07 5.9E-12 69.6 8.8 31 91-122 146-176 (252)
493 PLN02165 adenylate isopentenyl 98.6 1.9E-07 4.1E-12 72.4 7.9 34 10-43 44-77 (334)
494 TIGR00956 3a01205 Pleiotropic 98.6 1.8E-07 3.8E-12 85.5 9.0 110 10-122 790-930 (1394)
495 PLN03130 ABC transporter C fam 98.6 5.5E-08 1.2E-12 89.8 5.7 109 10-122 644-768 (1622)
496 TIGR00954 3a01203 Peroxysomal 98.6 4E-08 8.6E-13 83.7 4.4 108 10-124 479-612 (659)
497 PRK14241 phosphate transporter 98.6 7.7E-08 1.7E-12 72.9 5.4 31 91-122 146-176 (258)
498 COG4559 ABC-type hemin transpo 98.6 2.1E-07 4.5E-12 67.1 6.9 111 10-123 28-170 (259)
499 cd03291 ABCC_CFTR1 The CFTR su 98.6 7.8E-09 1.7E-13 79.2 -0.6 109 10-122 64-187 (282)
500 TIGR00955 3a01204 The Eye Pigm 98.6 4.8E-07 1E-11 76.7 10.0 113 10-123 52-195 (617)
No 1
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=3e-36 Score=208.06 Aligned_cols=185 Identities=54% Similarity=0.939 Sum_probs=174.3
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhc-CChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 029287 6 GKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIAS-NSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESS 84 (196)
Q Consensus 6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~ 84 (196)
..++.+|.+.|+|||||-|+|..+.++||+.|++.|+++|++... +++.+..+++++..|..++...+..++.+.+...
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~~ 84 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRSS 84 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHhc
Confidence 456789999999999999999999999999999999999999887 8999999999999999999999999999999976
Q ss_pred CC-CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCC--CCCCcHHHHHHHHHHHHhchHhHHHH
Q 029287 85 DS-KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEG--RVDDNIDTVRKRLQVFKALNLPVINY 161 (196)
Q Consensus 85 ~~-~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (196)
.. .++++||||...+|...|.+.+...|++++||||+.+++.+|+..|.+. |.+++.+.+++|++.|.....+++++
T Consensus 85 ~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~et~~~~t~Pvi~~ 164 (195)
T KOG3079|consen 85 GDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRLETYNKSTLPVIEY 164 (195)
T ss_pred CCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHcchHHHHH
Confidence 65 5599999999999999999998888999999999999999999999766 88999999999999999999999999
Q ss_pred HHhcCcEEEEeCCCCHhHHHHHHHHHHHh
Q 029287 162 YARRGKLYTINAVGTVDEIFEQVRAVFAA 190 (196)
Q Consensus 162 ~~~~~~~~~I~~~~~~~~v~~~i~~~i~~ 190 (196)
|..++.++.|+++.++++|+.++...+..
T Consensus 165 ~e~kg~l~~i~a~~~~d~Vf~~v~~~id~ 193 (195)
T KOG3079|consen 165 YEKKGKLLKINAERSVDDVFEEVVTAIDA 193 (195)
T ss_pred HHccCcEEEecCCCCHHHHHHHHHHHhhc
Confidence 99999999999999999999999888764
No 2
>PLN02200 adenylate kinase family protein
Probab=100.00 E-value=9.4e-35 Score=215.38 Aligned_cols=191 Identities=80% Similarity=1.260 Sum_probs=175.3
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 029287 6 GKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSD 85 (196)
Q Consensus 6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~ 85 (196)
++.|++|+|.|+|||||||+|+.|++++|+.+++.|+++++.+...++.+..+.+.+..|..++++.....+.+.+....
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~~ 119 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESSD 119 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Confidence 45678999999999999999999999999999999999999998888999999999999999999888888888887655
Q ss_pred CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhc
Q 029287 86 SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARR 165 (196)
Q Consensus 86 ~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (196)
+.+||+||||.+..|+..+.......||.+|+|++|++++.+|+.+|..+|.+++.+.+.+|++.|.....++.++|...
T Consensus 120 ~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y~~~~~pv~~~y~~~ 199 (234)
T PLN02200 120 NNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQGRVDDNIDTIKKRLKVFNALNLPVIDYYSKK 199 (234)
T ss_pred CCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67899999999999999988877778999999999999999999999767788889999999999999999999999888
Q ss_pred CcEEEEeCCCCHhHHHHHHHHHHHhhhhhcC
Q 029287 166 GKLYTINAVGTVDEIFEQVRAVFAALKLVTE 196 (196)
Q Consensus 166 ~~~~~I~~~~~~~~v~~~i~~~i~~~~~~~~ 196 (196)
..++.||+++++++|++.+.+.+...+.|+|
T Consensus 200 ~~~~~IDa~~~~eeV~~~v~~~l~~~~~~~~ 230 (234)
T PLN02200 200 GKLYTINAVGTVDEIFEQVRPIFAACEAMKE 230 (234)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHcCCccc
Confidence 8899999999999999999999999988875
No 3
>PLN02674 adenylate kinase
Probab=100.00 E-value=6.1e-33 Score=205.01 Aligned_cols=182 Identities=31% Similarity=0.570 Sum_probs=166.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCC
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDS 86 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~ 86 (196)
+.++.|+|.|+|||||||+++.|+++||+.|++.|++++..+...++.+..+++++..|..+++..+...+.+.+...++
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~ 108 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC 108 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCc
Confidence 34578889999999999999999999999999999999999999999999999999999999999999999999986553
Q ss_pred -CcEEEeCCCCCHHHHHHHHHHh---CCCCcEEEEeecChHHHHHHHhhccC----------------------------
Q 029287 87 -KKFLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVNRVLNRNE---------------------------- 134 (196)
Q Consensus 87 -~~~iid~~~~~~~~~~~~~~~~---~~~p~~~i~ld~~~~~~~~Rl~~r~~---------------------------- 134 (196)
.+||+||||.+..|...|...+ +..|+.+|+|++|.+++.+|+..|+.
T Consensus 109 ~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~L 188 (244)
T PLN02674 109 QKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPL 188 (244)
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCCCcccCcccccCCcc
Confidence 7899999999999999887654 46899999999999999999998841
Q ss_pred -CCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHH
Q 029287 135 -GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVF 188 (196)
Q Consensus 135 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i 188 (196)
.|.+|+.+.+.+|+..|.+...+++++|.+.+.+..||+++++++|+++|...+
T Consensus 189 ~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l 243 (244)
T PLN02674 189 IQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL 243 (244)
T ss_pred ccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 267889999999999999999999999999989999999999999999988765
No 4
>PRK14531 adenylate kinase; Provisional
Probab=100.00 E-value=2.5e-32 Score=196.27 Aligned_cols=178 Identities=33% Similarity=0.648 Sum_probs=160.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCc
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKK 88 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~ 88 (196)
++.|+++|+|||||||+++.|++++|+.+++.|+++++.+...++.+..+++++..|..+++..+...+.+.+......+
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~~~g 81 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALNSGG 81 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhccCCc
Confidence 35788899999999999999999999999999999999998888999999999999999999999888888877545678
Q ss_pred EEEeCCCCCHHHHHHHHHH---hCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhc
Q 029287 89 FLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARR 165 (196)
Q Consensus 89 ~iid~~~~~~~~~~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (196)
||+||||.+..|...+... ....|+.+|+|++|++++.+|+..| +|.+++.+.+.+|+..|.....+++++|.+.
T Consensus 82 ~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R--~r~dD~~e~i~~Rl~~y~~~~~pv~~~y~~~ 159 (183)
T PRK14531 82 WLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLAR--GRADDNEAVIRNRLEVYREKTAPLIDHYRQR 159 (183)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999988877654 3457898999999999999999998 6777889999999999999999999999988
Q ss_pred CcEEEEeCCCCHhHHHHHHHHHH
Q 029287 166 GKLYTINAVGTVDEIFEQVRAVF 188 (196)
Q Consensus 166 ~~~~~I~~~~~~~~v~~~i~~~i 188 (196)
+.++.||+++++++++.++.+.+
T Consensus 160 ~~~~~id~~~~~~~v~~~i~~~l 182 (183)
T PRK14531 160 GLLQSVEAQGSIEAITERIEKVL 182 (183)
T ss_pred CCEEEEECCCCHHHHHHHHHHHh
Confidence 88999999999999999987754
No 5
>PRK13808 adenylate kinase; Provisional
Probab=100.00 E-value=1.6e-32 Score=210.06 Aligned_cols=184 Identities=33% Similarity=0.630 Sum_probs=165.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCC-Cc
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDS-KK 88 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~-~~ 88 (196)
|.|+|+|||||||||+++.|++.||+.+++.|++++..+...++.+..+.+++..|..++++.+..++.+.+...++ .+
T Consensus 1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G 80 (333)
T PRK13808 1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANG 80 (333)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCC
Confidence 35888999999999999999999999999999999999989999999999999999999999999999988876543 78
Q ss_pred EEEeCCCCCHHHHHHHHHHh---CCCCcEEEEeecChHHHHHHHhhcc--------CCCCCCcHHHHHHHHHHHHhchHh
Q 029287 89 FLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVNRVLNRN--------EGRVDDNIDTVRKRLQVFKALNLP 157 (196)
Q Consensus 89 ~iid~~~~~~~~~~~~~~~~---~~~p~~~i~ld~~~~~~~~Rl~~r~--------~~~~~~~~~~~~~~~~~~~~~~~~ 157 (196)
||+||||.+..|...|...+ ...||++|+||+|++++++|+..|. ..|.+++.+.+.+|+..|.....+
T Consensus 81 ~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~~~t~P 160 (333)
T PRK13808 81 FILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQTEP 160 (333)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHHHHhHH
Confidence 99999999999988877654 3589999999999999999999873 146677899999999999999999
Q ss_pred HHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287 158 VINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKL 193 (196)
Q Consensus 158 ~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~ 193 (196)
++++|.+...++.||+++++++|+++|...|..++.
T Consensus 161 Ll~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~~~ 196 (333)
T PRK13808 161 LVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVGA 196 (333)
T ss_pred HHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHHhC
Confidence 999999888899999999999999999999988764
No 6
>PLN02459 probable adenylate kinase
Probab=100.00 E-value=1.1e-31 Score=199.14 Aligned_cols=180 Identities=32% Similarity=0.617 Sum_probs=164.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcC---
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESS--- 84 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~--- 84 (196)
.++.|+|.|||||||||+++.|++.||+.+++.|+++|+.+...++.+..+++++..|..+++..+...+.+.+...
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~ 107 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEE 107 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhccccc
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccC------------------------------
Q 029287 85 DSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNE------------------------------ 134 (196)
Q Consensus 85 ~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~------------------------------ 134 (196)
...+||+||||.+..|...|... ..++.+|+|++|.+++++|+..|+.
T Consensus 108 ~~~g~iLDGFPRt~~Qa~~Le~~--~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~~~~~p~~ 185 (261)
T PLN02459 108 GESGFILDGFPRTVRQAEILEGV--TDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVMPPLL 185 (261)
T ss_pred CCceEEEeCCCCCHHHHHHHHhc--CCCCEEEEEECCHHHHHHHhhccccccccCccccccccccccccccccccCCCCC
Confidence 34789999999999999998764 3689999999999999999998841
Q ss_pred ----------CCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287 135 ----------GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFA 189 (196)
Q Consensus 135 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~ 189 (196)
.|.+++.+.+.+|+..|.+...++.++|.+.+.++.||+++++++|+++|...+.
T Consensus 186 ~~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~ 250 (261)
T PLN02459 186 PPPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALN 250 (261)
T ss_pred CCcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhc
Confidence 4678899999999999999999999999999999999999999999999887764
No 7
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=100.00 E-value=3e-31 Score=190.96 Aligned_cols=178 Identities=59% Similarity=1.017 Sum_probs=157.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcEE
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKFL 90 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~i 90 (196)
+|+|+|+|||||||+|+.|++++|+.+++.++++++.+...++.+..+.+++..|..+++.....++.+.+....+.+||
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~v 80 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADGSKKFL 80 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccCCCcEE
Confidence 47889999999999999999999999999999999998877888888999999999999998888888888764467899
Q ss_pred EeCCCCCHHHHHHHHHHhC--CCCcEEEEeecChHHHHHHHhhccC--CCCCCcHHHHHHHHHHHHhchHhHHHHHHhcC
Q 029287 91 IDGFPRSEENRAAFERIMG--AEPDIVLFFDCPEEEMVNRVLNRNE--GRVDDNIDTVRKRLQVFKALNLPVINYYARRG 166 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~--~~p~~~i~ld~~~~~~~~Rl~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (196)
+||||.+..|...+...+. ..|+.+|+|++|++++.+|+.+|.. ++.+++.+.+.+++..|.....++.++|....
T Consensus 81 lDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~~~~ 160 (183)
T TIGR01359 81 IDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKG 160 (183)
T ss_pred EeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999988887766542 4799999999999999999999853 45667889999999999999999999998888
Q ss_pred cEEEEeCCCCHhHHHHHHHHHH
Q 029287 167 KLYTINAVGTVDEIFEQVRAVF 188 (196)
Q Consensus 167 ~~~~I~~~~~~~~v~~~i~~~i 188 (196)
.++.||++++++++++++.+.+
T Consensus 161 ~~~~Id~~~~~~~v~~~i~~~l 182 (183)
T TIGR01359 161 KVKEINAEGSVEEVFEDVEKIF 182 (183)
T ss_pred CEEEEECCCCHHHHHHHHHHHh
Confidence 8999999999999999987765
No 8
>PRK14528 adenylate kinase; Provisional
Probab=100.00 E-value=4.4e-31 Score=190.02 Aligned_cols=178 Identities=30% Similarity=0.648 Sum_probs=160.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-CCc
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSD-SKK 88 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~-~~~ 88 (196)
+.|+|.|+|||||||+++.|+++||+.+++.|++++..+....+.+..+..++..|..+++..+...+.+.+.... ..+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~g 81 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKNG 81 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccCc
Confidence 5688899999999999999999999999999999999988888999999999999999999988888888887643 468
Q ss_pred EEEeCCCCCHHHHHHHHHHh---CCCCcEEEEeecChHHHHHHHhhcc--CCCCCCcHHHHHHHHHHHHhchHhHHHHHH
Q 029287 89 FLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVNRVLNRN--EGRVDDNIDTVRKRLQVFKALNLPVINYYA 163 (196)
Q Consensus 89 ~iid~~~~~~~~~~~~~~~~---~~~p~~~i~ld~~~~~~~~Rl~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (196)
||+||||.+..|...+...+ ...||.+|+||+|++++.+|+..|. .+|.+++.+.+.+|+..|.+...+++++|.
T Consensus 82 ~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~pv~~~y~ 161 (186)
T PRK14528 82 FLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLPLLDFYA 161 (186)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999988887654 3579999999999999999999884 467788999999999999999999999999
Q ss_pred hcCcEEEEeCCCCHhHHHHHHHHH
Q 029287 164 RRGKLYTINAVGTVDEIFEQVRAV 187 (196)
Q Consensus 164 ~~~~~~~I~~~~~~~~v~~~i~~~ 187 (196)
..+.++.||+++++++|+..+.+.
T Consensus 162 ~~~~~~~i~~~~~~~~v~~~~~~~ 185 (186)
T PRK14528 162 AQKKLSQVNGVGSLEEVTSLIQKE 185 (186)
T ss_pred hCCCEEEEECCCCHHHHHHHHHHh
Confidence 999999999999999999987653
No 9
>PRK14529 adenylate kinase; Provisional
Probab=100.00 E-value=1.7e-31 Score=195.20 Aligned_cols=179 Identities=28% Similarity=0.525 Sum_probs=159.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF 89 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~ 89 (196)
|.|+|.|+|||||||+++.|+++|++.+++.++++++.+...++.+..+++++..|..++++.+.+.+.+.+...+..+|
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~ 80 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGW 80 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcE
Confidence 36888999999999999999999999999999999999888899999999999999999999999999999987667899
Q ss_pred EEeCCCCCHHHHHHHHHH---hCCCCcEEEEeecChHHHHHHHhhccC-------------------------------C
Q 029287 90 LIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVLNRNE-------------------------------G 135 (196)
Q Consensus 90 iid~~~~~~~~~~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl~~r~~-------------------------------~ 135 (196)
|+||||.+..|...|... ....|+.+|+|++|.+++.+|+..|+. .
T Consensus 81 iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~l~~ 160 (223)
T PRK14529 81 LLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGELST 160 (223)
T ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCcCCcccc
Confidence 999999999999988765 356899999999999999999998840 2
Q ss_pred CCCCc-HHHHHHHHHHHHhc---hHhHHHHHHh-----cCcEEEEeCCCCHhHHHHHHHHHH
Q 029287 136 RVDDN-IDTVRKRLQVFKAL---NLPVINYYAR-----RGKLYTINAVGTVDEIFEQVRAVF 188 (196)
Q Consensus 136 ~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~I~~~~~~~~v~~~i~~~i 188 (196)
|.+|+ .+.+++|+..|.+. ..+.+++|.+ .+.++.||+++++++|+++|.+.+
T Consensus 161 R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l 222 (223)
T PRK14529 161 RADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQL 222 (223)
T ss_pred CCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 66775 67999999999987 4477889986 677889999999999999987765
No 10
>PRK14532 adenylate kinase; Provisional
Probab=100.00 E-value=1.3e-30 Score=188.39 Aligned_cols=179 Identities=30% Similarity=0.652 Sum_probs=158.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-CCcE
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSD-SKKF 89 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~-~~~~ 89 (196)
.|+|.|+|||||||+++.|++.+|+.+++.|+++++.+...++.+..+++++..|..+++..+...+.+.+.... ..+|
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 81 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEAAGGA 81 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCcE
Confidence 578899999999999999999999999999999999988888899999999999999999988888888886543 4789
Q ss_pred EEeCCCCCHHHHHHHHHHh---CCCCcEEEEeecChHHHHHHHhhcc--CCCCCCcHHHHHHHHHHHHhchHhHHHHHHh
Q 029287 90 LIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVNRVLNRN--EGRVDDNIDTVRKRLQVFKALNLPVINYYAR 164 (196)
Q Consensus 90 iid~~~~~~~~~~~~~~~~---~~~p~~~i~ld~~~~~~~~Rl~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (196)
|+|+||.+..|+..+...+ +..||.+|+|++|++++.+|+.+|. .+|.+++.+.+.+|+..|.....+...+|.+
T Consensus 82 vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i~~~y~~ 161 (188)
T PRK14532 82 IFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPLLPYYAG 161 (188)
T ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999988876543 4689999999999999999999884 4677888888999999999888888899988
Q ss_pred cCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287 165 RGKLYTINAVGTVDEIFEQVRAVFA 189 (196)
Q Consensus 165 ~~~~~~I~~~~~~~~v~~~i~~~i~ 189 (196)
...++.||+++++++++++|.+.+.
T Consensus 162 ~~~~~~id~~~~~eev~~~I~~~l~ 186 (188)
T PRK14532 162 QGKLTEVDGMGSIEAVAASIDAALE 186 (188)
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHh
Confidence 7788899999999999999888764
No 11
>PRK14527 adenylate kinase; Provisional
Probab=100.00 E-value=1.5e-30 Score=188.41 Aligned_cols=181 Identities=35% Similarity=0.726 Sum_probs=161.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCC
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSK 87 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~ 87 (196)
.+++|++.|+|||||||+++.|++++|+.+++.|+++++.....++.+....+++..+...+++.....+.+.+...++.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~~~ 84 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGMEPV 84 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCCC
Confidence 46789999999999999999999999999999999999988888888888999999999999998899988888765567
Q ss_pred cEEEeCCCCCHHHHHHHHHH---hCCCCcEEEEeecChHHHHHHHhhcc--CCCCCCcHHHHHHHHHHHHhchHhHHHHH
Q 029287 88 KFLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVLNRN--EGRVDDNIDTVRKRLQVFKALNLPVINYY 162 (196)
Q Consensus 88 ~~iid~~~~~~~~~~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (196)
+||+||||.+..|+..+... .+..++.+++|++|++++.+|+.+|. .+|.+++.+.+.+|+..|.....++.++|
T Consensus 85 ~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~~~~v~~~y 164 (191)
T PRK14527 85 RVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQPLVDYY 164 (191)
T ss_pred cEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 79999999998887766553 34678888999999999999999984 35778889999999999999999999999
Q ss_pred HhcCcEEEEeCCCCHhHHHHHHHHHH
Q 029287 163 ARRGKLYTINAVGTVDEIFEQVRAVF 188 (196)
Q Consensus 163 ~~~~~~~~I~~~~~~~~v~~~i~~~i 188 (196)
.+.+.++.||+++++++|+++|...+
T Consensus 165 ~~~~~~~~id~~~~~~~v~~~i~~~l 190 (191)
T PRK14527 165 EARGHLKRVDGLGTPDEVYARILKAL 190 (191)
T ss_pred HhcCCEEEEECCCCHHHHHHHHHHhh
Confidence 99889999999999999999987654
No 12
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=100.00 E-value=2.8e-30 Score=189.55 Aligned_cols=177 Identities=36% Similarity=0.722 Sum_probs=160.1
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC--CCcE
Q 029287 12 CFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSD--SKKF 89 (196)
Q Consensus 12 i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~--~~~~ 89 (196)
|+|+|+|||||||+++.|+++||+.+++.|+++++.+...++.+..+.+++..|..+++..+...+.+.+.... ..+|
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~~~ 81 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNENGF 81 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCCcE
Confidence 77899999999999999999999999999999999988888999999999999999999999999999987632 4789
Q ss_pred EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccC-----------------------------CCCCCc
Q 029287 90 LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNE-----------------------------GRVDDN 140 (196)
Q Consensus 90 iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~-----------------------------~~~~~~ 140 (196)
|+||||.+..|...+...+...|+.+|+|++|.+++.+|+..|.. .|.+++
T Consensus 82 ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R~dD~ 161 (210)
T TIGR01351 82 ILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDDT 161 (210)
T ss_pred EEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccccCCCCC
Confidence 999999999999888876543689999999999999999998841 367788
Q ss_pred HHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHH
Q 029287 141 IDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVF 188 (196)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i 188 (196)
.+.+.+|+..|.+...++.++|.+.+.++.||+++++++|++.|.+.+
T Consensus 162 ~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 209 (210)
T TIGR01351 162 EEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL 209 (210)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence 999999999999999999999999888999999999999999988765
No 13
>PRK02496 adk adenylate kinase; Provisional
Probab=100.00 E-value=4.9e-30 Score=184.76 Aligned_cols=178 Identities=31% Similarity=0.656 Sum_probs=158.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCC-C
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDS-K 87 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~-~ 87 (196)
|+.++|+|+|||||||+++.|++.||+.+++.|+++++.....++.+.....++..|...+++.....+.+.+...++ .
T Consensus 1 ~~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~ 80 (184)
T PRK02496 1 MTRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAAN 80 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccC
Confidence 367889999999999999999999999999999999998888888888899999999999999999998888875443 6
Q ss_pred cEEEeCCCCCHHHHHHHHHH---hCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHh
Q 029287 88 KFLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYAR 164 (196)
Q Consensus 88 ~~iid~~~~~~~~~~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (196)
+||+||||.+..|...+... +...|+.+|+|++|++++.+|+..| ++.+++.+.+.+|+..|.....++.++|.+
T Consensus 81 g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R--~~~dd~~~~~~~r~~~y~~~~~~v~~~~~~ 158 (184)
T PRK02496 81 GWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLAR--GRKDDTEEVIRRRLEVYREQTAPLIDYYRD 158 (184)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999998887766553 3467999999999999999999998 566678899999999999999999999988
Q ss_pred cCcEEEEeCCCCHhHHHHHHHHHH
Q 029287 165 RGKLYTINAVGTVDEIFEQVRAVF 188 (196)
Q Consensus 165 ~~~~~~I~~~~~~~~v~~~i~~~i 188 (196)
...++.||+++++++|+++|...+
T Consensus 159 ~~~~~~Ida~~~~~~V~~~i~~~l 182 (184)
T PRK02496 159 RQKLLTIDGNQSVEAVTTELKAAL 182 (184)
T ss_pred cCCEEEEECCCCHHHHHHHHHHHh
Confidence 888999999999999999988765
No 14
>PRK14526 adenylate kinase; Provisional
Probab=100.00 E-value=2.2e-30 Score=188.93 Aligned_cols=178 Identities=27% Similarity=0.560 Sum_probs=159.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-CCcE
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSD-SKKF 89 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~-~~~~ 89 (196)
.|+|+|+|||||||+++.|++.+++.+++.|+++++.....++.+..+++++..|..+++..+.+++.+.+.... ..+|
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g~ 81 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDNF 81 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCcE
Confidence 578899999999999999999999999999999999988888999999999999999999999999999987643 4789
Q ss_pred EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc-----------------------------CCCCCCc
Q 029287 90 LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN-----------------------------EGRVDDN 140 (196)
Q Consensus 90 iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~-----------------------------~~~~~~~ 140 (196)
|+||||.+..|...+...+. ...+|+|++|++++.+|+..|. ..|.+++
T Consensus 82 ilDGfPR~~~Qa~~l~~~~~--~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD~ 159 (211)
T PRK14526 82 ILDGFPRNINQAKALDKFLP--NIKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDK 159 (211)
T ss_pred EEECCCCCHHHHHHHHHhcC--CCEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeeccCCCC
Confidence 99999999999988877432 2456889999999999999884 1477889
Q ss_pred HHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHh
Q 029287 141 IDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAA 190 (196)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~ 190 (196)
.+.+.+|+..|.+...++.++|...+.+..||+++++++|+++|.+.+.+
T Consensus 160 ~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~ 209 (211)
T PRK14526 160 EESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISK 209 (211)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 99999999999999999999999988899999999999999999888765
No 15
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.98 E-value=4.6e-30 Score=189.07 Aligned_cols=181 Identities=36% Similarity=0.743 Sum_probs=161.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCC-Cc
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDS-KK 88 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~-~~ 88 (196)
|.|+|.|+|||||||+++.|+++||+.+++.++++++.+...++.+..+++++..|..+++..+...+.+.+....+ .+
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~g 80 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKNG 80 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccCC
Confidence 36888999999999999999999999999999999999888889999999999999999999999999988876443 48
Q ss_pred EEEeCCCCCHHHHHHHHHH---hCCCCcEEEEeecChHHHHHHHhhccC-----------------------------CC
Q 029287 89 FLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVLNRNE-----------------------------GR 136 (196)
Q Consensus 89 ~iid~~~~~~~~~~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl~~r~~-----------------------------~~ 136 (196)
||+||||.+..|...+... ....|+.+|+|++|.+++.+|+..|.. .|
T Consensus 81 ~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~~r 160 (215)
T PRK00279 81 FLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQR 160 (215)
T ss_pred EEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCcccCC
Confidence 9999999999988888644 345789999999999999999998842 46
Q ss_pred CCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHh
Q 029287 137 VDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAA 190 (196)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~ 190 (196)
.+++.+.+.+|+..|.....++.++|...+.++.||+++++++|++++.+.+..
T Consensus 161 ~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (215)
T PRK00279 161 ADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK 214 (215)
T ss_pred CCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 677899999999999999999999999988899999999999999999887754
No 16
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.97 E-value=1.8e-29 Score=186.11 Aligned_cols=178 Identities=26% Similarity=0.566 Sum_probs=159.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhc--C-
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMES--S- 84 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~--~- 84 (196)
.||.|+|+|||||||||+++.|++.||+.+++.|+++++.....++.+..+++++..|..+++..+...+.+.+.. .
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~ 84 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTDD 84 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhccc
Confidence 4678999999999999999999999999999999999999888889999999999999999999999998888875 2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc-------------------------------
Q 029287 85 DSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN------------------------------- 133 (196)
Q Consensus 85 ~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~------------------------------- 133 (196)
...+||+||||.+..|...+... ..|+.+++|++|.+++++|+..|+
T Consensus 85 ~~~g~iLDGfPRt~~Qa~~l~~~--~~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~pp~~~~~~c~ 162 (229)
T PTZ00088 85 CFKGFILDGFPRNLKQCKELGKI--TNIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADCE 162 (229)
T ss_pred cCceEEEecCCCCHHHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccccccCCCCCCCCccc
Confidence 34789999999999999888754 379999999999999999999874
Q ss_pred --------CCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCc-EEEE---eCCCCHhHHHHHHHHH
Q 029287 134 --------EGRVDDNIDTVRKRLQVFKALNLPVINYYARRGK-LYTI---NAVGTVDEIFEQVRAV 187 (196)
Q Consensus 134 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~I---~~~~~~~~v~~~i~~~ 187 (196)
..|.+++.+.+.+|+..|.+...++.++|...+. ++.+ |+++++++|.+.|...
T Consensus 163 ~~~~~~~l~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~y~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 228 (229)
T PTZ00088 163 GCKGNPKLQKRSDDTEEIVAHRLNTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFYRIVLQR 228 (229)
T ss_pred ccCCcccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHhh
Confidence 1466778999999999999999999999999887 8776 7999999999887653
No 17
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.97 E-value=4e-28 Score=175.34 Aligned_cols=181 Identities=50% Similarity=0.881 Sum_probs=153.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhc--CCCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMES--SDSK 87 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~--~~~~ 87 (196)
.+|+|+|+|||||||+++.|++.+|+.+++.|+++++.+....+.+..++..+..+...+...+...+...+.. ..+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGTSK 83 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCcCC
Confidence 57888999999999999999999999999999999988777777777888888888777777777776666553 2457
Q ss_pred cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc--CCCCCCcHHHHHHHHHHHHhchHhHHHHHHhc
Q 029287 88 KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN--EGRVDDNIDTVRKRLQVFKALNLPVINYYARR 165 (196)
Q Consensus 88 ~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (196)
+||+|+||.+..|...+...+ ..|+.+|+|++|++++.+|+.+|. .+|.+++.+.+.+|+..|.....+..++|...
T Consensus 84 ~~i~dg~~~~~~q~~~~~~~~-~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~~y~~~ 162 (188)
T TIGR01360 84 GFLIDGYPREVKQGEEFERRI-GPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYYETK 162 (188)
T ss_pred eEEEeCCCCCHHHHHHHHHcC-CCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhC
Confidence 899999999988887776654 479999999999999999999885 35677788899999999888888888888777
Q ss_pred CcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287 166 GKLYTINAVGTVDEIFEQVRAVFAAL 191 (196)
Q Consensus 166 ~~~~~I~~~~~~~~v~~~i~~~i~~~ 191 (196)
..++.||++++++++.++|...++.+
T Consensus 163 ~~~~~id~~~~~~~v~~~i~~~l~~~ 188 (188)
T TIGR01360 163 GKLRKINAEGTVDDVFLQVCTAIDKL 188 (188)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhcC
Confidence 78889999999999999998887643
No 18
>PRK14530 adenylate kinase; Provisional
Probab=99.97 E-value=3.2e-28 Score=179.29 Aligned_cols=175 Identities=33% Similarity=0.644 Sum_probs=149.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHH-----hcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREI-----ASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSD 85 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~ 85 (196)
.|+|+|+|||||||+++.|++.||+.+++.|+++++.. ......+. ..+++..|..+++......+...+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~~-- 81 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALSD-- 81 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHhc--
Confidence 68889999999999999999999999999999999876 23334443 67778888889988888888777653
Q ss_pred CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccC-----------------------------CC
Q 029287 86 SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNE-----------------------------GR 136 (196)
Q Consensus 86 ~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~-----------------------------~~ 136 (196)
..+||+||||.+..|...+.... .|+++|+||+|++++.+|+.+|.. .|
T Consensus 82 ~~~~IldG~pr~~~q~~~l~~~~--~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~rl~~R 159 (215)
T PRK14530 82 ADGFVLDGYPRNLEQAEYLESIT--DLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQR 159 (215)
T ss_pred CCCEEEcCCCCCHHHHHHHHHhc--CCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCcccCC
Confidence 46899999999998887776532 689999999999999999988741 35
Q ss_pred CCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHh
Q 029287 137 VDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAA 190 (196)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~ 190 (196)
.+++.+.+++|+..|.....++.++|.+.+.+..||+++++++|++.+...+..
T Consensus 160 ~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 213 (215)
T PRK14530 160 DDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDD 213 (215)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhc
Confidence 667899999999999999999999999888888999999999999999887753
No 19
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.96 E-value=3.1e-27 Score=171.54 Aligned_cols=170 Identities=42% Similarity=0.818 Sum_probs=150.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcC-CCCcE
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESS-DSKKF 89 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~-~~~~~ 89 (196)
.|+|+|+|||||||+++.|++.||+.+++.++++++......+.+..+.+++..+...++......+...+... ...+|
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~ 80 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKGF 80 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCE
Confidence 37889999999999999999999999999999999988888888888999998888888888888888888754 34789
Q ss_pred EEeCCCCCHHHHHHHHHHhC--CCCcEEEEeecChHHHHHHHhhccC---------------------CCCCCcHHHHHH
Q 029287 90 LIDGFPRSEENRAAFERIMG--AEPDIVLFFDCPEEEMVNRVLNRNE---------------------GRVDDNIDTVRK 146 (196)
Q Consensus 90 iid~~~~~~~~~~~~~~~~~--~~p~~~i~ld~~~~~~~~Rl~~r~~---------------------~~~~~~~~~~~~ 146 (196)
|+|+||.+..|...+..... ..|+++|+|++|++++.+|+.+|.. .|.+++.+.+++
T Consensus 81 vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~l~~r~dd~~~~i~~ 160 (194)
T cd01428 81 ILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNEETIKK 160 (194)
T ss_pred EEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCcCCCcccCCccccCCCCCHHHHHH
Confidence 99999999999888877653 3789999999999999999999853 266778899999
Q ss_pred HHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHH
Q 029287 147 RLQVFKALNLPVINYYARRGKLYTINAVGTVDEI 180 (196)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v 180 (196)
|+..|.....++.++|...+.+..||+++++++|
T Consensus 161 R~~~y~~~~~~i~~~~~~~~~~~~id~~~~~~~v 194 (194)
T cd01428 161 RLEVYKEQTAPLIDYYKKKGKLVEIDGSGDIDEV 194 (194)
T ss_pred HHHHHHHhHHHHHHHHHhCCCEEEEECCCCcCcC
Confidence 9999999999999999998899999999998764
No 20
>PLN02842 nucleotide kinase
Probab=99.96 E-value=7.5e-27 Score=186.97 Aligned_cols=177 Identities=31% Similarity=0.670 Sum_probs=156.7
Q ss_pred EEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC--CCcEEE
Q 029287 14 VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSD--SKKFLI 91 (196)
Q Consensus 14 i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~--~~~~ii 91 (196)
|+|+|||||||+++.|+++||+.+++.+++++..+...++.+..+++++..|..+++..+...+.+.+.... ..+||+
T Consensus 2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~IL 81 (505)
T PLN02842 2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWLL 81 (505)
T ss_pred eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEEE
Confidence 689999999999999999999999999999999999999999999999999999999999998888887543 467999
Q ss_pred eCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccC-------------------------CCCCCcHHHHHH
Q 029287 92 DGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNE-------------------------GRVDDNIDTVRK 146 (196)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~-------------------------~~~~~~~~~~~~ 146 (196)
||||.+..|...+.. ....||++|+||+|++++.+|+..|.. .|.+++.+.+++
T Consensus 82 DGfPRt~~Qa~~Le~-~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~eE~Ikk 160 (505)
T PLN02842 82 DGYPRSFAQAQSLEK-LKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVKA 160 (505)
T ss_pred eCCCCcHHHHHHHHh-cCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccccccccccCCCCCHHHHHH
Confidence 999999888877765 456899999999999999999988741 466788999999
Q ss_pred HHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287 147 RLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKL 193 (196)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~ 193 (196)
|+..|.....++..+|.. .+..||+++++++|+++|.+.+..++.
T Consensus 161 RL~~Y~~~t~pIl~~Y~~--rl~~IDAsqs~EeVfeeI~~iL~~~L~ 205 (505)
T PLN02842 161 RLQIYKKNAEAILSTYSD--IMVKIDGNRPKEVVFEEISSLLSQIQK 205 (505)
T ss_pred HHHHHHHHhhhHHHhcCc--EEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999888854 577899999999999999988877654
No 21
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.96 E-value=9.3e-27 Score=165.39 Aligned_cols=173 Identities=38% Similarity=0.734 Sum_probs=156.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCC-c
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSK-K 88 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~-~ 88 (196)
|.|+|.|+|||||||+|+.|+++++++|++.|++++......++.+...+.++..+..+++......+...+...++. +
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~~ 80 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKAG 80 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccCe
Confidence 468889999999999999999999999999999999999999999999999999999999999999999999976543 6
Q ss_pred EEEeCCCCCHHHHHHHHHHh---CCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhc
Q 029287 89 FLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARR 165 (196)
Q Consensus 89 ~iid~~~~~~~~~~~~~~~~---~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (196)
+|+++||.+..|...+.+.+ +..++.++.+++|.+....|+..|.. |.+++.+.+.+|+..|.....+.+.+|.
T Consensus 81 ~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~-r~dd~~~~~~~R~~~y~~~~~pli~~y~-- 157 (178)
T COG0563 81 FILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV-REDDNEETVKKRLKVYHEQTAPLIEYYS-- 157 (178)
T ss_pred EEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc-cccCCHHHHHHHHHHHHhcccchhhhhe--
Confidence 99999999999998888753 35889999999999999999999842 6788999999999999999999999987
Q ss_pred CcEEEEeCCCCHhHHHHHHHHHH
Q 029287 166 GKLYTINAVGTVDEIFEQVRAVF 188 (196)
Q Consensus 166 ~~~~~I~~~~~~~~v~~~i~~~i 188 (196)
..||+.++++++++++.+.+
T Consensus 158 ---~~id~~~~i~~v~~~i~~~l 177 (178)
T COG0563 158 ---VTIDGSGEIEEVLADILKAL 177 (178)
T ss_pred ---eeccCCCCHHHHHHHHHHhh
Confidence 67999999999999987654
No 22
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.96 E-value=7.1e-27 Score=163.13 Aligned_cols=146 Identities=42% Similarity=0.888 Sum_probs=130.1
Q ss_pred EEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcC-CCCcEEEe
Q 029287 14 VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESS-DSKKFLID 92 (196)
Q Consensus 14 i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~-~~~~~iid 92 (196)
|.|||||||||+|+.|+++||+.+++.++++++.+...++.+..+++.+..|..++++.+..++...+... ...+||+|
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~ild 80 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFILD 80 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceeeee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999876 45899999
Q ss_pred CCCCCHHHHHHHHHH---hCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcC
Q 029287 93 GFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRG 166 (196)
Q Consensus 93 ~~~~~~~~~~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (196)
|||.+..|...|... ....|+.+|+|++|.+.+.+|+.+ ++.+.+++|+..|.....++.++|.+.+
T Consensus 81 GfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~-------d~~~~i~~Rl~~y~~~~~~i~~~y~~~g 150 (151)
T PF00406_consen 81 GFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ-------DNEEVIKKRLEEYRENTEPILDYYKEQG 150 (151)
T ss_dssp SB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT-------GSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc-------CCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999988873 356899999999999999999987 4789999999999999999999998754
No 23
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=99.90 E-value=4e-22 Score=144.65 Aligned_cols=183 Identities=38% Similarity=0.675 Sum_probs=161.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCC-
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDS- 86 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~- 86 (196)
++...++.|+|||||+|++..+++.|+..|+..|++.|+.+...++.+....+.+..|..+++..++..+...+....+
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~~~ 93 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPRCQ 93 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccccc
Confidence 3578888999999999999999999999999999999999999999999999999999999999999977767776533
Q ss_pred CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc-----------------------------CCCC
Q 029287 87 KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN-----------------------------EGRV 137 (196)
Q Consensus 87 ~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~-----------------------------~~~~ 137 (196)
.+|++|+||++..|...+.. ....+|.+|.|++|.+.+.+|+..|. ..|.
T Consensus 94 ~~~ildg~Prt~~qa~~l~~-~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDitgepL~qr~ 172 (235)
T KOG3078|consen 94 KGFILDGFPRTVQQAEELLD-RIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDITGEPLIQRE 172 (235)
T ss_pred cccccCCCCcchHHHHHHHH-ccCCcceEEEecCCHHHHHHHHhcccccCcccceecccccCCccccccccccChhhcCc
Confidence 78999999999887777444 45589999999999999999999884 1466
Q ss_pred CCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287 138 DDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192 (196)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~ 192 (196)
+|+.+.++.|+..|.+...+..++|..++.+..+++.. .++|+..+...+....
T Consensus 173 dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~-~~~v~~~v~~~l~~~~ 226 (235)
T KOG3078|consen 173 DDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK-PEEVFPNVYAFLSKKV 226 (235)
T ss_pred cccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc-hhHhHHHHHHHHHhhh
Confidence 78899999999999999999999999999888788887 8889888887776543
No 24
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.87 E-value=5.5e-21 Score=138.46 Aligned_cols=174 Identities=19% Similarity=0.309 Sum_probs=113.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcC-CCCCHH--------HHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEG-KIVPSE--------VTVSLIQ 78 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~--------~~~~~i~ 78 (196)
+.++|+|+|..||||||+++.|++++.-..++ .++.++ +.+++.+..+++.+.++ ...... ...+++.
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~--v~~trE-P~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~ 78 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIK--VVLTRE-PGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLE 78 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCe--EEEEeC-CCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999998322221 122233 44478899999988876 233221 1123333
Q ss_pred HHHhc--CCCCcEEEeCCCCCHHHHHH---------HHH--HhCC---CCcEEEEeecChHHHHHHHhhccCC--CCCCc
Q 029287 79 KEMES--SDSKKFLIDGFPRSEENRAA---------FER--IMGA---EPDIVLFFDCPEEEMVNRVLNRNEG--RVDDN 140 (196)
Q Consensus 79 ~~l~~--~~~~~~iid~~~~~~~~~~~---------~~~--~~~~---~p~~~i~ld~~~~~~~~Rl~~r~~~--~~~~~ 140 (196)
+.... ..+..+|+|+|..+...... +.. .+.+ .||+++|||+|+++..+|+.+|... +.+ .
T Consensus 79 ~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~~~r~E-~ 157 (208)
T COG0125 79 EVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGELRDRFE-K 157 (208)
T ss_pred HHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCccchhh-h
Confidence 33332 24578899999877433321 111 1333 8999999999999999999998532 111 1
Q ss_pred HH--HHHHHHHHHHhchHhHHHHHHhc--CcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287 141 ID--TVRKRLQVFKALNLPVINYYARR--GKLYTINAVGTVDEIFEQVRAVFAALKL 193 (196)
Q Consensus 141 ~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~I~~~~~~~~v~~~i~~~i~~~~~ 193 (196)
.+ .+++..+.|... ++. ..+++||++.++++|.++|.+.+...+.
T Consensus 158 ~~~~f~~kvr~~Y~~l--------a~~~~~r~~vIda~~~~e~v~~~i~~~l~~~l~ 206 (208)
T COG0125 158 EDDEFLEKVREGYLEL--------AAKFPERIIVIDASRPLEEVHEEILKILKERLG 206 (208)
T ss_pred HHHHHHHHHHHHHHHH--------HhhCCCeEEEEECCCCHHHHHHHHHHHHHHhhc
Confidence 11 233333444443 333 3589999999999999999998877654
No 25
>PRK13973 thymidylate kinase; Provisional
Probab=99.87 E-value=5.1e-20 Score=135.35 Aligned_cols=170 Identities=24% Similarity=0.338 Sum_probs=107.7
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHh---CCceechhHHHHHHHhcCChhhHHHHHHhhcCC--CC------------CHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNY---GLTHLSAGELLRREIASNSEYGTTILNTIKEGK--IV------------PSE 71 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~------------~~~ 71 (196)
.++|+|+|++||||||+++.|++++ |..++.. +. +...+.+..+++.+..+. .. ...
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~-----~~-p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~r~~ 76 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT-----RE-PGGSPGAEAIRHVLLSGAAELYGPRMEALLFAAARDD 76 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE-----EC-CCCCchHHHHHHHHcCCCccCCCHHHHHHHHHHHHHH
Confidence 3788889999999999999999999 7666543 00 112223334444333211 11 111
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCHH------------HHHHHHHH--hCCCCcEEEEeecChHHHHHHHhhccC---
Q 029287 72 VTVSLIQKEMESSDSKKFLIDGFPRSEE------------NRAAFERI--MGAEPDIVLFFDCPEEEMVNRVLNRNE--- 134 (196)
Q Consensus 72 ~~~~~i~~~l~~~~~~~~iid~~~~~~~------------~~~~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~~r~~--- 134 (196)
.....+...+. .+..+|+|+|..+.. +...+... -.+.||++||||+|++++.+|+.+|..
T Consensus 77 ~~~~~i~~~l~--~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~ 154 (213)
T PRK13973 77 HVEEVIRPALA--RGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDT 154 (213)
T ss_pred HHHHHHHHHHH--CCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCc
Confidence 22233455554 356788999885421 22222221 126899999999999999999998842
Q ss_pred -CCCC-CcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287 135 -GRVD-DNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192 (196)
Q Consensus 135 -~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~ 192 (196)
++.+ ++.+.++++...|.... +. .+..+.+||+++++++|.++|...+...+
T Consensus 155 ~~~~e~~~~~~~~~~~~~y~~l~----~~--~~~~~~~Ida~~~~e~V~~~I~~~i~~~~ 208 (213)
T PRK13973 155 PDRFEKEDLAFHEKRREAFLQIA----AQ--EPERCVVIDATASPEAVAAEIWAAVDQRL 208 (213)
T ss_pred cCchhhchHHHHHHHHHHHHHHH----Hh--CCCcEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 1332 23455556666666542 21 23467889999999999999999887654
No 26
>PRK01184 hypothetical protein; Provisional
Probab=99.86 E-value=4.6e-19 Score=127.60 Aligned_cols=173 Identities=23% Similarity=0.340 Sum_probs=111.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhc-CCh-----hhHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIAS-NSE-----YGTTILNTIKEGKIVPSEVTVSLIQKEME 82 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~-~~~-----~~~~~~~~l~~~~~~~~~~~~~~i~~~l~ 82 (196)
|++|+|+|+|||||||+++ +++.+|+.+++.|+++++.... ..+ .+....+.... +........+...+.
T Consensus 1 ~~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~i~ 76 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKE---LGMDAVAKRTVPKIR 76 (184)
T ss_pred CcEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHH---HChHHHHHHHHHHHH
Confidence 3689999999999999987 6788899999999999887532 211 23323322211 111222233334444
Q ss_pred cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCC--cHHHHHHHHHHHHhchHhHHH
Q 029287 83 SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDD--NIDTVRKRLQVFKALNLPVIN 160 (196)
Q Consensus 83 ~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 160 (196)
......+|+|++ ....+...+...+. .+..+|++++|++.+.+|+..|. +.++ +.+.+.++......+.. .+
T Consensus 77 ~~~~~~vvidg~-r~~~e~~~~~~~~~-~~~~~i~v~~~~~~~~~Rl~~R~--~~~d~~~~~~~~~r~~~q~~~~~--~~ 150 (184)
T PRK01184 77 EKGDEVVVIDGV-RGDAEVEYFRKEFP-EDFILIAIHAPPEVRFERLKKRG--RSDDPKSWEELEERDERELSWGI--GE 150 (184)
T ss_pred hcCCCcEEEeCC-CCHHHHHHHHHhCC-cccEEEEEECCHHHHHHHHHHcC--CCCChhhHHHHHHHHHHHhccCH--HH
Confidence 444577899998 56666555554443 46678999999999999999883 3322 45666666554332222 11
Q ss_pred HHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287 161 YYARRGKLYTINAVGTVDEIFEQVRAVFAALKL 193 (196)
Q Consensus 161 ~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~ 193 (196)
.+ ..+. ++|+++++.+++..++...+..+..
T Consensus 151 ~~-~~ad-~vI~N~~~~~~l~~~v~~~~~~~~~ 181 (184)
T PRK01184 151 VI-ALAD-YMIVNDSTLEEFRARVRKLLERILR 181 (184)
T ss_pred HH-HhcC-EEEeCCCCHHHHHHHHHHHHHHHhc
Confidence 22 1222 4577888999999999988877654
No 27
>PRK13974 thymidylate kinase; Provisional
Probab=99.86 E-value=5.8e-20 Score=134.95 Aligned_cols=176 Identities=20% Similarity=0.238 Sum_probs=118.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcee---chhHHHHHHHhcCChhhHHHHHHhhcC--CCCCHHHH---------HH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHL---SAGELLRREIASNSEYGTTILNTIKEG--KIVPSEVT---------VS 75 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i---~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~---------~~ 75 (196)
.+|+++|++||||||+++.|++.+..... ....+..+ .+.+++.+..+++++... ....+... .+
T Consensus 4 ~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~-~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~~ 82 (212)
T PRK13974 4 KFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITR-EPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRAQ 82 (212)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeee-CCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHH
Confidence 68899999999999999999998842111 01111112 234567888899988632 22222211 11
Q ss_pred H----HHHHHhcCCCCcEEEeCCCCCHHH------------HHHHHHH--hCCCCcEEEEeecChHHHHHHHhhccCCCC
Q 029287 76 L----IQKEMESSDSKKFLIDGFPRSEEN------------RAAFERI--MGAEPDIVLFFDCPEEEMVNRVLNRNEGRV 137 (196)
Q Consensus 76 ~----i~~~l~~~~~~~~iid~~~~~~~~------------~~~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~ 137 (196)
. +...+. .+..+|+|+|..+... ...+... ....||++||||+|++++.+|+..|.
T Consensus 83 ~~~~~i~~~l~--~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~---- 156 (212)
T PRK13974 83 HVSKIIRPALE--NGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRK---- 156 (212)
T ss_pred HHHHHHHHHHH--CCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcc----
Confidence 1 222222 3557788887655221 1222221 23579999999999999999998762
Q ss_pred CCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhhhc
Q 029287 138 DDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKLVT 195 (196)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~~~ 195 (196)
++ .++++...|.....+...+|.+.+.+..||+++++++|.++|.+.+.+.+..+
T Consensus 157 dD---~~e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~I~~~l~~~~~~~ 211 (212)
T PRK13974 157 PD---RIEAEGIEFLERVAEGFALIAEERNWKVISADQSIETISNEIKETLLNNFSNK 211 (212)
T ss_pred cC---chhhhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHHHHhhc
Confidence 22 24556667888888888889888899999999999999999999988765543
No 28
>PLN02924 thymidylate kinase
Probab=99.85 E-value=1.9e-19 Score=132.39 Aligned_cols=173 Identities=21% Similarity=0.264 Sum_probs=110.5
Q ss_pred cCCCCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHH----------
Q 029287 4 KGGKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT---------- 73 (196)
Q Consensus 4 ~~~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---------- 73 (196)
.+.+.+++|+|+|.+||||||+++.|+++++...+.+ ...+.+...+..|..+++++..+........
T Consensus 11 ~~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v--~~~~ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~ 88 (220)
T PLN02924 11 SVESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA--ELWRFPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWE 88 (220)
T ss_pred CcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc--eeeeCCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 3345568999999999999999999999996544333 1222233456677778887765433322111
Q ss_pred -HHHHHHHHhcCCCCcEEEeCCCCCHHHHH--------HHHH--HhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHH
Q 029287 74 -VSLIQKEMESSDSKKFLIDGFPRSEENRA--------AFER--IMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNID 142 (196)
Q Consensus 74 -~~~i~~~l~~~~~~~~iid~~~~~~~~~~--------~~~~--~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~ 142 (196)
...+...+. .+..+|+|+|..+..... ++.. ...+.||++||||+|++++.+|...+ ..+. ++.+
T Consensus 89 ~~~~I~pal~--~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~-~~~~-E~~~ 164 (220)
T PLN02924 89 KRSLMERKLK--SGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYG-GERY-EKLE 164 (220)
T ss_pred HHHHHHHHHH--CCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccC-cccc-ccHH
Confidence 122333333 467889999987632221 1111 12468999999999999999997532 1222 2344
Q ss_pred HHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287 143 TVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAAL 191 (196)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~ 191 (196)
.+++....|... ++ ..+.+||++.++++|.++|.+.+...
T Consensus 165 ~~~rv~~~Y~~l--------a~-~~~~vIDa~~sieeV~~~I~~~I~~~ 204 (220)
T PLN02924 165 FQKKVAKRFQTL--------RD-SSWKIIDASQSIEEVEKKIREVVLDT 204 (220)
T ss_pred HHHHHHHHHHHH--------hh-cCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 444333444444 32 36788999999999999998887654
No 29
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.81 E-value=2.2e-18 Score=126.08 Aligned_cols=173 Identities=20% Similarity=0.304 Sum_probs=99.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhc--CCCCCHHHH-------H----H
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE--GKIVPSEVT-------V----S 75 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~-------~----~ 75 (196)
.++|+|+|++||||||+++.|++.++..... ..+.+.+ .....+..+++.+.. ....+.... . .
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~--~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 79 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQGRD--VVFTREP-GGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQHLEE 79 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCc--eeEeeCC-CCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999987321100 0111111 123455556665542 111111111 1 1
Q ss_pred HHHHHHhcCCCCcEEEeCCCCCHHHH------------HHHHHHh--CCCCcEEEEeecChHHHHHHHhhccCC-CCCC-
Q 029287 76 LIQKEMESSDSKKFLIDGFPRSEENR------------AAFERIM--GAEPDIVLFFDCPEEEMVNRVLNRNEG-RVDD- 139 (196)
Q Consensus 76 ~i~~~l~~~~~~~~iid~~~~~~~~~------------~~~~~~~--~~~p~~~i~ld~~~~~~~~Rl~~r~~~-~~~~- 139 (196)
.+...+ ..+..+|+|+|..+.... ..+...+ .+.||++|||++|++++.+|+.+|... +.+.
T Consensus 80 ~i~~~l--~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~~~~~~~ 157 (205)
T PRK00698 80 VIKPAL--ARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGELDRIEQE 157 (205)
T ss_pred HHHHHH--HCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhh
Confidence 122222 235678999887653211 1222222 157999999999999999999998421 1111
Q ss_pred cHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287 140 NIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192 (196)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~ 192 (196)
..+.++.....|.... . .....+++||++++++++.++|.+.+.+++
T Consensus 158 ~~~~~~~~~~~y~~~~----~--~~~~~~~~Id~~~~~e~v~~~i~~~i~~~~ 204 (205)
T PRK00698 158 GLDFFERVREGYLELA----E--KEPERIVVIDASQSLEEVHEDILAVIKAWL 204 (205)
T ss_pred hHHHHHHHHHHHHHHH----H--hCCCeEEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 1222222222333321 1 123467889999999999999999887765
No 30
>PRK13975 thymidylate kinase; Provisional
Probab=99.81 E-value=1e-17 Score=121.80 Aligned_cols=166 Identities=16% Similarity=0.247 Sum_probs=100.7
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHH-----------HHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEV-----------TVSLI 77 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------~~~~i 77 (196)
.++|+|+|++||||||+++.|+++++...... +.+...+..+++.+..+ ...... ....+
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~--------~~~~~~g~~ir~~~~~~-~~~~~~~~~~f~~~r~~~~~~i 72 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCE--------PTDGKIGKLIREILSGS-KCDKETLALLFAADRVEHVKEI 72 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeeEC--------CCCChHHHHHHHHHccC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999998432110 11223344455554433 111110 01112
Q ss_pred HHHHhcCCCCcEEEeCCCCCHH----------HHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCC-CCcHHHHHH
Q 029287 78 QKEMESSDSKKFLIDGFPRSEE----------NRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRV-DDNIDTVRK 146 (196)
Q Consensus 78 ~~~l~~~~~~~~iid~~~~~~~----------~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~-~~~~~~~~~ 146 (196)
...+. ...+|+|+|..+.. ++..........||++|||++|++++.+|+..|. +. .++.+.+++
T Consensus 73 ~~~~~---~~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~--~~~~~~~~~~~~ 147 (196)
T PRK13975 73 EEDLK---KRDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRD--KEIFEKKEFLKK 147 (196)
T ss_pred HHHHc---CCEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccC--ccccchHHHHHH
Confidence 22222 25688999875421 1111111224579999999999999999999883 22 223455555
Q ss_pred HHHHHHhchHhHHHHHHhcCcEEEEeCC-CCHhHHHHHHHHHHHh
Q 029287 147 RLQVFKALNLPVINYYARRGKLYTINAV-GTVDEIFEQVRAVFAA 190 (196)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~I~~~-~~~~~v~~~i~~~i~~ 190 (196)
....|..... ...+.....+++||++ .+++++.++|.+.+.+
T Consensus 148 ~~~~y~~~~~--~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i~~ 190 (196)
T PRK13975 148 VQEKYLELAN--NEKFMPKYGFIVIDTTNKSIEEVFNEILNKIKD 190 (196)
T ss_pred HHHHHHHHHh--hcccCCcCCEEEEECCCCCHHHHHHHHHHHHHH
Confidence 5566666533 1112223467889985 8999999998887754
No 31
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.81 E-value=3.4e-18 Score=123.88 Aligned_cols=164 Identities=20% Similarity=0.274 Sum_probs=108.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcC-----CCCCH-------------
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEG-----KIVPS------------- 70 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~------------- 70 (196)
|++|+|+|++||||||+++.|++ +|+.+++.|.+.++...++.+....+.+....+ ..++.
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~ 80 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEA 80 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHH
Confidence 46899999999999999999998 899999999999988777766666665554321 11221
Q ss_pred -----HHHHHHHHHHHh----cCCC-CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCc
Q 029287 71 -----EVTVSLIQKEME----SSDS-KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDN 140 (196)
Q Consensus 71 -----~~~~~~i~~~l~----~~~~-~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~ 140 (196)
..+++.+.+.+. .... ..++++ .| +.+...+...+|.++++++|++++.+|+.+|+ ..+
T Consensus 81 ~~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e-~p------ll~e~~~~~~~D~vi~V~a~~e~~~~Rl~~R~----~~s 149 (194)
T PRK00081 81 RKKLEAILHPLIREEILEQLQEAESSPYVVLD-IP------LLFENGLEKLVDRVLVVDAPPETQLERLMARD----GLS 149 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCEEEEE-eh------HhhcCCchhhCCeEEEEECCHHHHHHHHHHcC----CCC
Confidence 233444444433 2222 344555 33 22332333468999999999999999999882 235
Q ss_pred HHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHh
Q 029287 141 IDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAA 190 (196)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~ 190 (196)
.+.+..+...+.+.. .. ... .-++|+++++.+++.+++...+.+
T Consensus 150 ~e~~~~ri~~Q~~~~----~~-~~~-ad~vI~N~g~~e~l~~qv~~i~~~ 193 (194)
T PRK00081 150 EEEAEAIIASQMPRE----EK-LAR-ADDVIDNNGDLEELRKQVERLLQE 193 (194)
T ss_pred HHHHHHHHHHhCCHH----HH-HHh-CCEEEECCCCHHHHHHHHHHHHHh
Confidence 566666665443321 11 111 226788999999999998887754
No 32
>PRK07933 thymidylate kinase; Validated
Probab=99.80 E-value=2.2e-18 Score=126.42 Aligned_cols=168 Identities=13% Similarity=0.108 Sum_probs=98.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhC---CceechhHHHHHHHhcCChhhHHHHHHhhcCC--CCCHH------------H
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYG---LTHLSAGELLRREIASNSEYGTTILNTIKEGK--IVPSE------------V 72 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~------------~ 72 (196)
|+|+|+|++||||||+++.|++++. ..++.. +......++.+..+++.+.... ...+. .
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~----~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~ 76 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATL----AFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAG 76 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE----ecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhh
Confidence 4899999999999999999999983 222111 0000012334444555544211 10000 0
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCHHHH-------------HHHHHH------hCCCCcEEEEeecChHHHHHHHhhcc
Q 029287 73 TVSLIQKEMESSDSKKFLIDGFPRSEENR-------------AAFERI------MGAEPDIVLFFDCPEEEMVNRVLNRN 133 (196)
Q Consensus 73 ~~~~i~~~l~~~~~~~~iid~~~~~~~~~-------------~~~~~~------~~~~p~~~i~ld~~~~~~~~Rl~~r~ 133 (196)
....+...+. .+..+|+|+|..+.... ..+... ..+.||++||||+|++++.+|+.+|.
T Consensus 77 ~~~~I~p~l~--~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~ 154 (213)
T PRK07933 77 ARDELAGLLA--AHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRRA 154 (213)
T ss_pred hHHHHHHHHh--CCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhhc
Confidence 0122333333 35678999988764211 111111 12479999999999999999999884
Q ss_pred C-------CCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHH
Q 029287 134 E-------GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVF 188 (196)
Q Consensus 134 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i 188 (196)
. ++.+...+.+++..+.|..... .. .+..+++||+++++++|.++|.+.+
T Consensus 155 ~~~~~~~~d~~E~~~~f~~~v~~~Y~~~~~----~~-~~~~~~~ida~~~~e~v~~~i~~~~ 211 (213)
T PRK07933 155 AQDADRARDAYERDDGLQQRTGAVYAELAA----QG-WGGPWLVVDPDVDPAALAARLAAAL 211 (213)
T ss_pred cccCCcccccccccHHHHHHHHHHHHHHHH----hc-CCCCeEEeCCCCCHHHHHHHHHHHh
Confidence 2 1122223334333444444421 10 1358888999999999999987754
No 33
>PRK03839 putative kinase; Provisional
Probab=99.79 E-value=2.6e-17 Score=118.12 Aligned_cols=152 Identities=16% Similarity=0.238 Sum_probs=95.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF 89 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~ 89 (196)
|+|+|+|+|||||||+++.|++.+|+.+++.|+++++. ........ .+. ..-......+.+. ..+..+
T Consensus 1 m~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~-~~~~~~~~-------~~~-~~~~~l~~~~~~~---~~~~~v 68 (180)
T PRK03839 1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK-GIGEEKDD-------EME-IDFDKLAYFIEEE---FKEKNV 68 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc-CCcccCCh-------hhh-cCHHHHHHHHHHh---ccCCCE
Confidence 36889999999999999999999999999999988653 11000000 000 0011111222221 124558
Q ss_pred EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEE
Q 029287 90 LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLY 169 (196)
Q Consensus 90 iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (196)
|++++... ...++.+|+|++|++++.+|+.+|... ...........+.. ....+.+..+..++
T Consensus 69 IidG~~~~-----------l~~~~~vi~L~~~~~~~~~Rl~~R~~~----~~~~~~~~~~~~~~--~~~~~~~~~r~~~~ 131 (180)
T PRK03839 69 VLDGHLSH-----------LLPVDYVIVLRAHPKIIKERLKERGYS----KKKILENVEAELVD--VCLCEALEEKEKVI 131 (180)
T ss_pred EEEecccc-----------ccCCCEEEEEECCHHHHHHHHHHcCCC----HHHHHHHHHHHHHH--HHHHHHHHhcCCEE
Confidence 89986421 136899999999999999999887311 11111111111111 11234455667888
Q ss_pred EEeCC-CCHhHHHHHHHHHHHh
Q 029287 170 TINAV-GTVDEIFEQVRAVFAA 190 (196)
Q Consensus 170 ~I~~~-~~~~~v~~~i~~~i~~ 190 (196)
.||++ .+++++.++|.+.+..
T Consensus 132 ~Id~~~~s~eev~~~I~~~l~~ 153 (180)
T PRK03839 132 EVDTTGKTPEEVVEEILELIKS 153 (180)
T ss_pred EEECCCCCHHHHHHHHHHHHhc
Confidence 99986 6999999998887754
No 34
>PRK08356 hypothetical protein; Provisional
Probab=99.79 E-value=1.7e-17 Score=120.47 Aligned_cols=175 Identities=19% Similarity=0.239 Sum_probs=103.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCC-------hhhHHH----HHHhhcCCCCC----HH
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNS-------EYGTTI----LNTIKEGKIVP----SE 71 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~-------~~~~~~----~~~l~~~~~~~----~~ 71 (196)
..+++|+|+|||||||||+++.|++ +|+.+++.++.+++...... ..+... .+++..+...+ ..
T Consensus 3 ~~~~~i~~~G~~gsGK~t~a~~l~~-~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~ 81 (195)
T PRK08356 3 VEKMIVGVVGKIAAGKTTVAKFFEE-KGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGED 81 (195)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH-CCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcH
Confidence 3457899999999999999999965 79999999886543222110 111111 12222222222 12
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCC--cHHHHHHHHH
Q 029287 72 VTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDD--NIDTVRKRLQ 149 (196)
Q Consensus 72 ~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~--~~~~~~~~~~ 149 (196)
.....+.+.+.. ...+++||+ .+..|+..+.. ....+||+++|++++.+|+..|...+... +.+.+..+..
T Consensus 82 ~~~~~~~~~~~~--~~~ividG~-r~~~q~~~l~~----~~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~ 154 (195)
T PRK08356 82 ILIRLAVDKKRN--CKNIAIDGV-RSRGEVEAIKR----MGGKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKFDE 154 (195)
T ss_pred HHHHHHHHHhcc--CCeEEEcCc-CCHHHHHHHHh----cCCEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHHHH
Confidence 333344444432 335899999 88888877765 23578999999999999999884322111 2333332221
Q ss_pred HHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287 150 VFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192 (196)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~ 192 (196)
. +..... ...+.+.+.++ |+++++.+++.+++.+++..+.
T Consensus 155 ~-~~~l~~-~~~~~~~aD~v-I~N~~~~e~~~~~i~~~~~~~~ 194 (195)
T PRK08356 155 W-EEKLYH-TTKLKDKADFV-IVNEGTLEELRKKVEEILRELS 194 (195)
T ss_pred H-HHHhhh-hhhHHHhCcEE-EECCCCHHHHHHHHHHHHHHhc
Confidence 1 110000 01112333444 4557899999999998887653
No 35
>PRK13976 thymidylate kinase; Provisional
Probab=99.79 E-value=1.9e-17 Score=120.91 Aligned_cols=171 Identities=16% Similarity=0.189 Sum_probs=104.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCc-e-echhHHHHHHHhcCChhhHHHHHHhhcCCCCCH-H-----------HHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLT-H-LSAGELLRREIASNSEYGTTILNTIKEGKIVPS-E-----------VTVS 75 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~-~-i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~-----------~~~~ 75 (196)
++|+++|.+||||||+++.|++.+.-. . ... ++.+. +.++..+..+++.+........ . ....
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v--~~~~e-P~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~ 77 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNV--VLTRE-PGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVK 77 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcce--EEeeC-CCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999998421 0 000 01111 2345566677776654211211 1 1112
Q ss_pred HHHHHHhcCCCCcEEEeCCCCCHHHH------------HHHHHH-hCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHH
Q 029287 76 LIQKEMESSDSKKFLIDGFPRSEENR------------AAFERI-MGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNID 142 (196)
Q Consensus 76 ~i~~~l~~~~~~~~iid~~~~~~~~~------------~~~~~~-~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~ 142 (196)
.+...+. .+..+|+|+|..+.... ..+... -.+.||++||||+|++++.+|+..+ .....+.+
T Consensus 78 ~I~p~l~--~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~--~~e~~~~~ 153 (209)
T PRK13976 78 VILPALL--QGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKN--GYEFMDLE 153 (209)
T ss_pred HHHHHHH--CCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhccc--chhcccHH
Confidence 2333333 46788999998763221 111111 1357999999999999999999644 22222455
Q ss_pred HHHHHHHHHHhchHhHHHHHHhcCcEEEEeC---CCC---HhHHHHHHHHHHHhhhh
Q 029287 143 TVRKRLQVFKALNLPVINYYARRGKLYTINA---VGT---VDEIFEQVRAVFAALKL 193 (196)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~---~~~---~~~v~~~i~~~i~~~~~ 193 (196)
.+++..+.|..... ..+..+..||+ +++ +++|.++|.+.+..++.
T Consensus 154 ~l~~v~~~Y~~l~~------~~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~~~ 204 (209)
T PRK13976 154 FYDKVRKGFREIVI------KNPHRCHVITCIDAKDNIEDINSVHLEIVKLLHAVTK 204 (209)
T ss_pred HHHHHHHHHHHHHH------hCCCCeEEEECCCCccCcCCHHHHHHHHHHHHHHHHH
Confidence 66555566666522 12345777887 345 99999999888877653
No 36
>PRK06217 hypothetical protein; Validated
Probab=99.78 E-value=2.7e-17 Score=118.29 Aligned_cols=161 Identities=16% Similarity=0.250 Sum_probs=101.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCc
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKK 88 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~ 88 (196)
|+.|+|+|++||||||+++.|++.+|+.+++.|++++.. ...+.. ...+.......+.+.+. ....
T Consensus 1 ~~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~--~~~~~~----------~~~~~~~~~~~~~~~~~--~~~~ 66 (183)
T PRK06217 1 MMRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLP--TDPPFT----------TKRPPEERLRLLLEDLR--PREG 66 (183)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeecc--CCCCcc----------ccCCHHHHHHHHHHHHh--cCCC
Confidence 367999999999999999999999999999999887642 111100 11122333344444443 2457
Q ss_pred EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCC---C---CCCc----HHHHHHHHHHHHhc----
Q 029287 89 FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEG---R---VDDN----IDTVRKRLQVFKAL---- 154 (196)
Q Consensus 89 ~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~---~---~~~~----~~~~~~~~~~~~~~---- 154 (196)
||++|++... ...+...+|.+||||+|++++.+|+.+|... + ...+ ...+.++...|...
T Consensus 67 ~vi~G~~~~~------~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 140 (183)
T PRK06217 67 WVLSGSALGW------GDPLEPLFDLVVFLTIPPELRLERLRLREFQRYGNRILPGGDMHKASLEFLEWAASYDTAGPEG 140 (183)
T ss_pred EEEEccHHHH------HHHHHhhCCEEEEEECCHHHHHHHHHcCcccccCcccCCCCCHHHHHHHHHHHHHhccCCCCCc
Confidence 8999887321 1223346899999999999999999988522 1 1111 12233344444432
Q ss_pred -hHhHHHHH-Hh-cCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287 155 -NLPVINYY-AR-RGKLYTINAVGTVDEIFEQVRAVFA 189 (196)
Q Consensus 155 -~~~~~~~~-~~-~~~~~~I~~~~~~~~v~~~i~~~i~ 189 (196)
.......+ .. ...++.+++..+++++.+++...++
T Consensus 141 ~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~i~~~~~ 178 (183)
T PRK06217 141 RSLAAHEQWLADQSCPVLRLDGDLTVEDLLDEVLDHLA 178 (183)
T ss_pred ccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHHh
Confidence 12212212 22 3677888998999999988877764
No 37
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.78 E-value=1.8e-17 Score=120.00 Aligned_cols=162 Identities=17% Similarity=0.255 Sum_probs=106.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcC-----C-CCCH-------------
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEG-----K-IVPS------------- 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~-~~~~------------- 70 (196)
++|+|+|++||||||+++.|++.+|+.+++.|++.+.....+.+....+.+.+... . .++.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 57999999999999999999999999999999999888877777766666555321 1 1111
Q ss_pred -----HHHHHHHHHHHh----cCC-CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCc
Q 029287 71 -----EVTVSLIQKEME----SSD-SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDN 140 (196)
Q Consensus 71 -----~~~~~~i~~~l~----~~~-~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~ 140 (196)
..+++.+.+.+. ... ...++++ .| +.+...+...+|.++++++|++++.+|+.+|+ ..+
T Consensus 82 ~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e-~p------ll~E~~~~~~~D~ii~V~a~~e~r~~Rl~~R~----g~s 150 (195)
T PRK14730 82 RRWLENLIHPYVRERFEEELAQLKSNPIVVLV-IP------LLFEAKLTDLCSEIWVVDCSPEQQLQRLIKRD----GLT 150 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEE-eH------HhcCcchHhCCCEEEEEECCHHHHHHHHHHcC----CCC
Confidence 123444444333 221 2334444 33 22222233367999999999999999999983 235
Q ss_pred HHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHH
Q 029287 141 IDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVF 188 (196)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i 188 (196)
.+.+..|...... .. ....... ++|+++++.+++.+++...+
T Consensus 151 ~e~~~~ri~~Q~~----~~-~k~~~aD-~vI~N~g~~e~l~~qv~~~l 192 (195)
T PRK14730 151 EEEAEARINAQWP----LE-EKVKLAD-VVLDNSGDLEKLYQQVDQLL 192 (195)
T ss_pred HHHHHHHHHhCCC----HH-HHHhhCC-EEEECCCCHHHHHHHHHHHH
Confidence 5556655543211 11 1112223 47889999999999987665
No 38
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.78 E-value=1.8e-17 Score=120.54 Aligned_cols=167 Identities=19% Similarity=0.283 Sum_probs=110.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCH-------------------
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPS------------------- 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------- 70 (196)
++|+|+|++||||||+++.|++ +|+.+++.|++.++...++.+....+.+.+..+...++
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~ 80 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT 80 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence 6899999999999999999997 69999999999988888877776666666644322110
Q ss_pred ----HHHHHHHHHHHh----c--CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCc
Q 029287 71 ----EVTVSLIQKEME----S--SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDN 140 (196)
Q Consensus 71 ----~~~~~~i~~~l~----~--~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~ 140 (196)
..+++.+...+. . ..+..+++-..| +.+...+...+|.+|++++|++++.+|+.+|+ .-+
T Consensus 81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e~p------lL~e~g~~~~~D~vi~V~a~~e~ri~Rl~~R~----g~s 150 (200)
T PRK14734 81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYDMP------LLVEKGLDRKMDLVVVVDVDVEERVRRLVEKR----GLD 150 (200)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEEee------ceeEcCccccCCeEEEEECCHHHHHHHHHHcC----CCC
Confidence 122333322222 1 112223333233 11111223368999999999999999999883 234
Q ss_pred HHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287 141 IDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKL 193 (196)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~ 193 (196)
.+.+..++..+.+.... ... ..++|+++++++++.+++..+++.+++
T Consensus 151 ~e~~~~ri~~Q~~~~~k-----~~~-ad~vI~N~g~~e~l~~~v~~~~~~~~~ 197 (200)
T PRK14734 151 EDDARRRIAAQIPDDVR-----LKA-ADIVVDNNGTREQLLAQVDGLIAEILS 197 (200)
T ss_pred HHHHHHHHHhcCCHHHH-----HHh-CCEEEECcCCHHHHHHHHHHHHHHHHh
Confidence 56666666555444211 112 225789999999999999988887764
No 39
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.78 E-value=2.2e-17 Score=120.91 Aligned_cols=171 Identities=20% Similarity=0.294 Sum_probs=107.0
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhc--------CC-CCCH------
Q 029287 6 GKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE--------GK-IVPS------ 70 (196)
Q Consensus 6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~-~~~~------ 70 (196)
++.+++|+|+|++||||||+++.|.+ +|+.+++.|.+.++...++.+....+...+.. +. .+..
T Consensus 2 ~~~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~ 80 (208)
T PRK14731 2 RSLPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQV 80 (208)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHH
Confidence 35578999999999999999999997 69999999888776655444322222222110 11 0111
Q ss_pred ------------HHHHHHHHHHHh----c--CCC-CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhh
Q 029287 71 ------------EVTVSLIQKEME----S--SDS-KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLN 131 (196)
Q Consensus 71 ------------~~~~~~i~~~l~----~--~~~-~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~ 131 (196)
..+++.+...+. . ..+ ..++++ .| +.+.......+|.+|++++|++++.+|+.+
T Consensus 81 vf~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e-~p------LL~e~~~~~~~d~ii~V~a~~e~~~~Rl~~ 153 (208)
T PRK14731 81 VFSDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKE-AA------ILFESGGDAGLDFIVVVAADTELRLERAVQ 153 (208)
T ss_pred HhCCHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEE-ee------eeeecCchhcCCeEEEEECCHHHHHHHHHH
Confidence 122333332222 1 112 333343 33 112222233579999999999999999999
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhhh
Q 029287 132 RNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKLV 194 (196)
Q Consensus 132 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~~ 194 (196)
|+ ..+.+.+.+|+..+....... +.. .++|+++++.+++.+++...+..++..
T Consensus 154 R~----~~s~e~~~~Ri~~q~~~~~~~-----~~a-d~vI~N~g~~e~l~~~i~~~~~~~~~~ 206 (208)
T PRK14731 154 RG----MGSREEIRRRIAAQWPQEKLI-----ERA-DYVIYNNGTLDELKAQTEQLYQVLLQA 206 (208)
T ss_pred cC----CCCHHHHHHHHHHcCChHHHH-----HhC-CEEEECCCCHHHHHHHHHHHHHHHHHh
Confidence 83 236677788776654442222 122 246888999999999999888777543
No 40
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.77 E-value=4e-17 Score=117.89 Aligned_cols=168 Identities=20% Similarity=0.270 Sum_probs=108.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCC-----CC--------------
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKI-----VP-------------- 69 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~-------------- 69 (196)
+++|+|+|.+||||||+++.+++ +|+++++.|++.++...++.+....+.+....... +.
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~ 80 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA 80 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence 68999999999999999999999 89999999999998877776655554444332111 00
Q ss_pred ----HHHHHHHHHHHH---hcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHH
Q 029287 70 ----SEVTVSLIQKEM---ESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNID 142 (196)
Q Consensus 70 ----~~~~~~~i~~~l---~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~ 142 (196)
....++.+...+ .......+++-..| +.+.......+|.+|+++||+++..+|+++| ...+.+
T Consensus 81 ~~~Le~i~hPli~~~~~~~~~~~~~~~~~~eip------lL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R----~~~~~e 150 (201)
T COG0237 81 RLKLEKILHPLIRAEIKVVIDGARSPYVVLEIP------LLFEAGGEKYFDKVIVVYAPPEIRLERLMKR----DGLDEE 150 (201)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhCCceEEEch------HHHhccccccCCEEEEEECCHHHHHHHHHhc----CCCCHH
Confidence 112344444433 11111223333344 3333323334789999999999999999999 344555
Q ss_pred HHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287 143 TVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKL 193 (196)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~ 193 (196)
....+.....+.... ...++ .++++++++++..+++...+..++.
T Consensus 151 ~~~~~~~~Q~~~~ek--~~~ad----~vi~n~~~i~~l~~~i~~~~~~~~~ 195 (201)
T COG0237 151 DAEARLASQRDLEEK--LALAD----VVIDNDGSIENLLEQIEKLLKELLG 195 (201)
T ss_pred HHHHHHHhcCCHHHH--HhhcC----ChhhcCCCHHHHHHHHHHHHHHHHh
Confidence 555444333333221 11112 3678999999999999888877654
No 41
>PRK08233 hypothetical protein; Provisional
Probab=99.77 E-value=1.1e-17 Score=120.14 Aligned_cols=170 Identities=16% Similarity=0.184 Sum_probs=94.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCC---HHHHHHHHHHHHhcC
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVP---SEVTVSLIQKEMESS 84 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~i~~~l~~~ 84 (196)
++++|+|.|++||||||+++.|++.++...+...+.+... .....+.+....+.... .......+.......
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 76 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFD-----NCPEDICKWIDKGANYSEWVLTPLIKDIQELIAKS 76 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcc-----cCchhhhhhhhccCChhhhhhHHHHHHHHHHHcCC
Confidence 3589999999999999999999999863322221211110 00111222222222221 111222232222221
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHh
Q 029287 85 DSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYAR 164 (196)
Q Consensus 85 ~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (196)
....+++| ++..... ..+...+|++|||++|++++.+|+.+|... +.+.+.+.++...|..+..+....+..
T Consensus 77 ~~~~vivd-~~~~~~~-----~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~--~~~~~~~~~~~~~~~~~~~~~y~~~~~ 148 (182)
T PRK08233 77 NVDYIIVD-YPFAYLN-----SEMRQFIDVTIFIDTPLDIAMARRILRDFK--EDTGNEIHNDLKHYLNYARPLYLEALH 148 (182)
T ss_pred CceEEEEe-eehhhcc-----HHHHHHcCEEEEEcCCHHHHHHHHHHHHhh--hccccchhhHHHHHHHHHHHHHHHHhh
Confidence 12334455 4432111 112235799999999999999998877321 122233445555666655554433222
Q ss_pred ---cCcEEEEeCCCCHhHHHHHHHHHHHh
Q 029287 165 ---RGKLYTINAVGTVDEIFEQVRAVFAA 190 (196)
Q Consensus 165 ---~~~~~~I~~~~~~~~v~~~i~~~i~~ 190 (196)
....++|+++.+++++.+++.+.+.+
T Consensus 149 ~~~~~~~~vId~~~~~e~i~~~i~~~l~~ 177 (182)
T PRK08233 149 TVKPNADIVLDGALSVEEIINQIEEELYR 177 (182)
T ss_pred cCccCCeEEEcCCCCHHHHHHHHHHHHHh
Confidence 23467799999999999999887754
No 42
>PLN02422 dephospho-CoA kinase
Probab=99.77 E-value=5.4e-17 Score=119.50 Aligned_cols=165 Identities=18% Similarity=0.265 Sum_probs=109.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcC-----CCCCH--------------
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEG-----KIVPS-------------- 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~-------------- 70 (196)
++|+|+|++||||||+++.|+ .+|+.+++.|++.++...++.+....+.+..... ..++.
T Consensus 2 ~~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~ 80 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKR 80 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 479999999999999999999 5799999999999888877766555555443221 11111
Q ss_pred ----HHHHHHHHHHHh-----c--CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCC
Q 029287 71 ----EVTVSLIQKEME-----S--SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDD 139 (196)
Q Consensus 71 ----~~~~~~i~~~l~-----~--~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~ 139 (196)
..+++.+...+. . .....+++| .| +.+...+...+|.+|++++|++++.+|+.+|+ ..
T Consensus 81 ~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~e-ip------LL~E~~~~~~~D~vI~V~a~~e~ri~RL~~R~----g~ 149 (232)
T PLN02422 81 QLLNRLLAPYISSGIFWEILKLWLKGCKVIVLD-IP------LLFETKMDKWTKPVVVVWVDPETQLERLMARD----GL 149 (232)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEE-eh------hhhhcchhhhCCEEEEEECCHHHHHHHHHHcC----CC
Confidence 233555544332 1 112334444 44 34444444568999999999999999999983 33
Q ss_pred cHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287 140 NIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192 (196)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~ 192 (196)
+.+.+..|.....+... . ...+. ++|+++++.+++..++...++.+.
T Consensus 150 s~eea~~Ri~~Q~~~ee----k-~~~AD-~VI~N~gs~e~L~~qv~~ll~~l~ 196 (232)
T PLN02422 150 SEEQARNRINAQMPLDW----K-RSKAD-IVIDNSGSLEDLKQQFQKVLEKIR 196 (232)
T ss_pred CHHHHHHHHHHcCChhH----H-HhhCC-EEEECCCCHHHHHHHHHHHHHHHh
Confidence 55666666533322211 1 12222 578899999999999988887764
No 43
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.76 E-value=1.4e-16 Score=115.36 Aligned_cols=170 Identities=16% Similarity=0.172 Sum_probs=107.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcC----CCCCH------------
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEG----KIVPS------------ 70 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~------------ 70 (196)
..|++|+|+|++||||||+++.|++.+|+.+++.|.+.++.... .+....+.+.+... ..++.
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~ 82 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKE 82 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHH
Confidence 34689999999999999999999998999999999888776544 33333333222111 11111
Q ss_pred ------HHHHHHHHHHHh----cCCCCcEEEeCCCCCHHHHHHHHHHh--CCCCcEEEEeecChHHHHHHHhhccCCCCC
Q 029287 71 ------EVTVSLIQKEME----SSDSKKFLIDGFPRSEENRAAFERIM--GAEPDIVLFFDCPEEEMVNRVLNRNEGRVD 138 (196)
Q Consensus 71 ------~~~~~~i~~~l~----~~~~~~~iid~~~~~~~~~~~~~~~~--~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~ 138 (196)
..+++.+.+.+. ......++++ .| +.+...+ ...+|.++++++|+++.++|+.+|+ .
T Consensus 83 ~~~~Le~i~HP~V~~~~~~~~~~~~~~~vv~e-ip------LL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd----~ 151 (204)
T PRK14733 83 AKKWLEDYLHPVINKEIKKQVKESDTVMTIVD-IP------LLGPYNFRHYDYLKKVIVIKADLETRIRRLMERD----G 151 (204)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCCeEEEE-ec------hhhhccCchhhhCCEEEEEECCHHHHHHHHHHcC----C
Confidence 233444444332 2222334454 33 2232221 2257999999999999999999883 3
Q ss_pred CcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCC-CHhHHHHHHHHHHHhhhhh
Q 029287 139 DNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVG-TVDEIFEQVRAVFAALKLV 194 (196)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~-~~~~v~~~i~~~i~~~~~~ 194 (196)
.+.+...+++....+. ......++ ++|++++ +.+++..++...++.+..+
T Consensus 152 ~s~~~a~~ri~~Q~~~--eek~~~aD----~VI~N~g~~~~~l~~~~~~~~~~~~~~ 202 (204)
T PRK14733 152 KNRQQAVAFINLQISD--KEREKIAD----FVIDNTELTDQELESKLITTINEITNL 202 (204)
T ss_pred CCHHHHHHHHHhCCCH--HHHHHhCC----EEEECcCCCHHHHHHHHHHHHHHHHhc
Confidence 3455555555433322 12222222 5788999 9999999999888877543
No 44
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.76 E-value=1.3e-16 Score=115.91 Aligned_cols=161 Identities=18% Similarity=0.216 Sum_probs=91.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCC---ceechhHHHHHHHhcCChhhHHHHHHhhcCCC--CCHH------------
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGL---THLSAGELLRREIASNSEYGTTILNTIKEGKI--VPSE------------ 71 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~------------ 71 (196)
.++|+|+|++||||||+++.|++.++. .++-. ..+...+.+..+++++..+.. ....
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~ 76 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFT------REPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHE 76 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE------eCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHH
Confidence 378999999999999999999999843 22211 001223445555555432221 1111
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCHH-----------HH-HHHHHHhCC-CCcEEEEeecChHHHHHHHhhccCCCC-
Q 029287 72 VTVSLIQKEMESSDSKKFLIDGFPRSEE-----------NR-AAFERIMGA-EPDIVLFFDCPEEEMVNRVLNRNEGRV- 137 (196)
Q Consensus 72 ~~~~~i~~~l~~~~~~~~iid~~~~~~~-----------~~-~~~~~~~~~-~p~~~i~ld~~~~~~~~Rl~~r~~~~~- 137 (196)
.....+...+. .+..+|+|+|..+.. ++ ..+...+.. .||++|||++|++.+.+|+..|.....
T Consensus 77 ~~~~~i~~~l~--~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~~~~~~ 154 (195)
T TIGR00041 77 HLEDKIKPALA--EGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRGELDRE 154 (195)
T ss_pred HHHHHHHHHHh--CCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcCCcchH
Confidence 11122222332 356778998764421 11 122222332 499999999999999999998832100
Q ss_pred -CCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHH
Q 029287 138 -DDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQV 184 (196)
Q Consensus 138 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i 184 (196)
..+.+.++.....|.+. +.....+++||+++++++|.++|
T Consensus 155 ~~~~~~~~~~~~~~y~~~-------~~~~~~~~~id~~~~~e~v~~~i 195 (195)
T TIGR00041 155 EFEKLDFFEKVRQRYLEL-------ADKEKSIHVIDATNSVEEVEQDI 195 (195)
T ss_pred HHHHHHHHHHHHHHHHHH-------HcCCCcEEEEeCCCCHHHHHhhC
Confidence 00111222222222222 22255788999999999998764
No 45
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.75 E-value=7.7e-16 Score=104.95 Aligned_cols=168 Identities=18% Similarity=0.189 Sum_probs=98.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF 89 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~ 89 (196)
|+|.|.|+|||||||+++.|++++|+.+++.|.++|+......=.-..+.++ .+..+..+..+......... ...+
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~-AE~~p~iD~~iD~rq~e~a~---~~nv 76 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRY-AEEDPEIDKEIDRRQKELAK---EGNV 76 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHH-HhcCchhhHHHHHHHHHHHH---cCCe
Confidence 5789999999999999999999999999999999987643322222222222 22223333333333333333 3445
Q ss_pred EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHH-hc---
Q 029287 90 LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYA-RR--- 165 (196)
Q Consensus 90 iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--- 165 (196)
|+++-. .-++. ...+|+-|||++|.++..+|+.+|.....++-.....+|- .+....+.+.|. +.
T Consensus 77 VlegrL-----A~Wi~---k~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE---~se~kRY~~~YgIDidDl 145 (179)
T COG1102 77 VLEGRL-----AGWIV---REYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVERE---ESEKKRYKKIYGIDIDDL 145 (179)
T ss_pred EEhhhh-----HHHHh---ccccceEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHH---HHHHHHHHHHhCCCCccc
Confidence 676532 11111 1478999999999999999999994221111111111111 111112222232 11
Q ss_pred -CcEEEEeC-CCCHhHHHHHHHHHHHhhh
Q 029287 166 -GKLYTINA-VGTVDEIFEQVRAVFAALK 192 (196)
Q Consensus 166 -~~~~~I~~-~~~~~~v~~~i~~~i~~~~ 192 (196)
..-++||. .-++++++.-+...+..+.
T Consensus 146 SiyDLVinTs~~~~~~v~~il~~aid~~~ 174 (179)
T COG1102 146 SIYDLVINTSKWDPEEVFLILLDAIDALS 174 (179)
T ss_pred eeeEEEEecccCCHHHHHHHHHHHHHhhc
Confidence 12244664 4578889888888876654
No 46
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=99.75 E-value=1.9e-17 Score=119.42 Aligned_cols=159 Identities=19% Similarity=0.293 Sum_probs=93.3
Q ss_pred EEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHH------------HHHHHHHHHH
Q 029287 14 VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSE------------VTVSLIQKEM 81 (196)
Q Consensus 14 i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~~~i~~~l 81 (196)
|+|.+||||||+++.|++++.-..... ++ ...+..++.+..+++++......... .....+...+
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~--~~-~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l 77 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYKV--II-TFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPAL 77 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEEE--EE-EESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCcc--cc-cCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999983211110 00 01123456667777777632222211 1112233333
Q ss_pred hcCCCCcEEEeCCCCCHH------------HHHHHHHH-hCCCCcEEEEeecChHHHHHHHhhccC-CCCCC-cHHHHHH
Q 029287 82 ESSDSKKFLIDGFPRSEE------------NRAAFERI-MGAEPDIVLFFDCPEEEMVNRVLNRNE-GRVDD-NIDTVRK 146 (196)
Q Consensus 82 ~~~~~~~~iid~~~~~~~------------~~~~~~~~-~~~~p~~~i~ld~~~~~~~~Rl~~r~~-~~~~~-~~~~~~~ 146 (196)
. .+..+|+|+|..+.. ....+... ....||++||||+||+++.+|+..|.. .+... ..+.+.+
T Consensus 78 ~--~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~~~~~~~~~~~~~~~ 155 (186)
T PF02223_consen 78 K--RGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGEKDDEEEEDLEYLRR 155 (186)
T ss_dssp H--TTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSSTTTTTTHHHHHHHH
T ss_pred c--CCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCccchHHHHHHHHHHH
Confidence 3 467889999775421 11111111 233999999999999999999999954 11111 2233332
Q ss_pred HHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHH
Q 029287 147 RLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQV 184 (196)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i 184 (196)
....|... +....++++||++.++++|.++|
T Consensus 156 ~~~~y~~l-------~~~~~~~~iid~~~~~e~v~~~I 186 (186)
T PF02223_consen 156 VREAYLEL-------AKDPNNWVIIDASRSIEEVHEQI 186 (186)
T ss_dssp HHHHHHHH-------HHTTTTEEEEETTS-HHHHHHHH
T ss_pred HHHHHHHH-------HcCCCCEEEEECCCCHHHHHhhC
Confidence 23333333 22467999999999999998875
No 47
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.75 E-value=4.4e-16 Score=113.24 Aligned_cols=166 Identities=16% Similarity=0.258 Sum_probs=94.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh---CCceechhHHHHHHHhcCChhhHHHHHHhhcCC--CCCHH-H-------HHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY---GLTHLSAGELLRREIASNSEYGTTILNTIKEGK--IVPSE-V-------TVSL 76 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~-~-------~~~~ 76 (196)
++|+|+|++||||||+++.|++.+ |..++.... +...+.+..+++++.... ..... . ....
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 74 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE------PGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQH 74 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHH
Confidence 478999999999999999999998 544433211 011123344454443321 11110 0 0111
Q ss_pred HHHHHh--cCCCCcEEEeCCCCCHH------------HHHHHHHH--hCCCCcEEEEeecChHHHHHHHhhccCCCC--C
Q 029287 77 IQKEME--SSDSKKFLIDGFPRSEE------------NRAAFERI--MGAEPDIVLFFDCPEEEMVNRVLNRNEGRV--D 138 (196)
Q Consensus 77 i~~~l~--~~~~~~~iid~~~~~~~------------~~~~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~--~ 138 (196)
..+.+. ...+..+|+|+|+.+.. ....+... ....|+.+|||++|++++.+|+.+|..... +
T Consensus 75 ~~~~~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~ 154 (200)
T cd01672 75 VEEVIKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDRDEQ 154 (200)
T ss_pred HHHHHHHHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhh
Confidence 111111 12467788998875521 11122111 124799999999999999999998842111 1
Q ss_pred CcHHHHHHHHHHHHhchHhHHHHHHh--cCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287 139 DNIDTVRKRLQVFKALNLPVINYYAR--RGKLYTINAVGTVDEIFEQVRAVFA 189 (196)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~I~~~~~~~~v~~~i~~~i~ 189 (196)
...+.+++....|... .. ..++++||++.+++++.++|.+.|.
T Consensus 155 ~~~~~~~~~~~~y~~~--------~~~~~~~~~~id~~~~~e~i~~~i~~~i~ 199 (200)
T cd01672 155 EGLEFHERVREGYLEL--------AAQEPERIIVIDASQPLEEVLAEILKAIL 199 (200)
T ss_pred hhHHHHHHHHHHHHHH--------HHhCCCeEEEEeCCCCHHHHHHHHHHHHh
Confidence 1122222222223322 22 2468889999999999999887764
No 48
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.74 E-value=5.8e-16 Score=115.07 Aligned_cols=167 Identities=19% Similarity=0.186 Sum_probs=107.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhc-----CCCCCH-------------
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE-----GKIVPS------------- 70 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~------------- 70 (196)
|++|+|+|..||||||+++.|++.+|+.+++.|.+.++...++.+....+.+.... ...++.
T Consensus 1 M~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~ 80 (244)
T PTZ00451 1 MILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQA 80 (244)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHH
Confidence 47899999999999999999999899999999999988877776655555443321 111211
Q ss_pred -----HHHHHHHHHH----Hh------------cCCCCcEEEeCCCCCHHHHHHHHHHh-CCCCcEEEEeecChHHHHHH
Q 029287 71 -----EVTVSLIQKE----ME------------SSDSKKFLIDGFPRSEENRAAFERIM-GAEPDIVLFFDCPEEEMVNR 128 (196)
Q Consensus 71 -----~~~~~~i~~~----l~------------~~~~~~~iid~~~~~~~~~~~~~~~~-~~~p~~~i~ld~~~~~~~~R 128 (196)
..+++.+... +. ......+++| .| +.|...+ ...+|.++++++|+++..+|
T Consensus 81 ~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~e-vP------LL~E~~~~~~~~D~iv~V~a~~e~ri~R 153 (244)
T PTZ00451 81 RRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLD-AP------TLFETKTFTYFVSASVVVSCSEERQIER 153 (244)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEE-ec------hhhccCchhhcCCeEEEEECCHHHHHHH
Confidence 1223333222 11 0112244555 33 3333221 22569999999999999999
Q ss_pred HhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCC--CCHhHHHHHHHHHHHhhh
Q 029287 129 VLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAV--GTVDEIFEQVRAVFAALK 192 (196)
Q Consensus 129 l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~--~~~~~v~~~i~~~i~~~~ 192 (196)
+.+|+ ..+.+.+++|...-.+ . . ....... ++|+++ ++.+++.+++...+.++.
T Consensus 154 L~~R~----g~s~eea~~Ri~~Q~~--~--~-ek~~~aD-~VI~N~~~g~~~~L~~~v~~~~~~~~ 209 (244)
T PTZ00451 154 LRKRN----GFSKEEALQRIGSQMP--L--E-EKRRLAD-YIIENDSADDLDELRGSVCDCVAWMS 209 (244)
T ss_pred HHHcC----CCCHHHHHHHHHhCCC--H--H-HHHHhCC-EEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 99882 3355666766654222 1 1 1122333 467778 999999999998876654
No 49
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.73 E-value=2e-16 Score=114.53 Aligned_cols=165 Identities=19% Similarity=0.288 Sum_probs=105.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcC-----CCCC----------------
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEG-----KIVP---------------- 69 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~---------------- 69 (196)
+|+|+|++||||||+++.|++ +|..+++.|.+.+....++.+....+.+.+... ..++
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~ 79 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK 79 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence 478999999999999998876 599999999999887777766555555433221 1111
Q ss_pred --HHHHHHHHHHHHh----c-CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHH
Q 029287 70 --SEVTVSLIQKEME----S-SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNID 142 (196)
Q Consensus 70 --~~~~~~~i~~~l~----~-~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~ 142 (196)
...+++.+.+.+. . .....++++ .|. .+...+...+|.++++++|++++.+|+.+|+ ..+.+
T Consensus 80 ~L~~i~hP~v~~~~~~~~~~~~~~~~vi~e-~pL------L~E~~~~~~~D~vi~V~a~~e~r~~RL~~R~----g~s~e 148 (196)
T PRK14732 80 ALNELIHPLVRKDFQKILQTTAEGKLVIWE-VPL------LFETDAYTLCDATVTVDSDPEESILRTISRD----GMKKE 148 (196)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCcEEEE-eee------eeEcCchhhCCEEEEEECCHHHHHHHHHHcC----CCCHH
Confidence 1233454444332 1 122334444 442 2222222357999999999999999999983 33556
Q ss_pred HHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287 143 TVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKL 193 (196)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~ 193 (196)
.+..|...-. +..+ ....+. ++|+++++.+++..++...++++++
T Consensus 149 ~a~~ri~~Q~----~~~~-k~~~aD-~vI~N~~~~~~l~~~v~~l~~~~~~ 193 (196)
T PRK14732 149 DVLARIASQL----PITE-KLKRAD-YIVRNDGNREGLKEECKILYSTLLK 193 (196)
T ss_pred HHHHHHHHcC----CHHH-HHHhCC-EEEECCCCHHHHHHHHHHHHHHHHH
Confidence 6666655422 1111 122333 4678888999999999988877654
No 50
>PRK04040 adenylate kinase; Provisional
Probab=99.73 E-value=6.3e-16 Score=111.26 Aligned_cols=171 Identities=13% Similarity=0.195 Sum_probs=100.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHh--CCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHh-cCC
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNY--GLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEME-SSD 85 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~-~~~ 85 (196)
|++|+|+|+|||||||+++.|++.+ ++.+++.|++++.......-. .-++.++.-...............+. ...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~--~~~d~~r~l~~~~~~~~~~~a~~~i~~~~~ 79 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLV--EHRDEMRKLPPEEQKELQREAAERIAEMAG 79 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCC--CCHHHHhhCChhhhHHHHHHHHHHHHHhhc
Confidence 6799999999999999999999999 899999999876654332210 01122221111111111122222222 123
Q ss_pred CCcEEEeCCCC-----CH---HHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhc-cCCCCCCcHHHHHHHHHHHHhchH
Q 029287 86 SKKFLIDGFPR-----SE---ENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNR-NEGRVDDNIDTVRKRLQVFKALNL 156 (196)
Q Consensus 86 ~~~~iid~~~~-----~~---~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r-~~~~~~~~~~~~~~~~~~~~~~~~ 156 (196)
...+|+|+... +. .....+ . ...|+.+|+|++||+.+.+|+.+. .++|..++.+.++.+...- .
T Consensus 80 ~~~~~~~~h~~i~~~~g~~~~~~~~~~-~--~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~~~~~a----~ 152 (188)
T PRK04040 80 EGPVIVDTHATIKTPAGYLPGLPEWVL-E--ELNPDVIVLIEADPDEILMRRLRDETRRRDVETEEDIEEHQEMN----R 152 (188)
T ss_pred CCCEEEeeeeeeccCCCCcCCCCHHHH-h--hcCCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHHHHHHH----H
Confidence 44578887442 10 011112 2 238999999999999998888853 2256666777776554432 3
Q ss_pred hHHHHHHh--cCcEEEE-eCCCCHhHHHHHHHHHH
Q 029287 157 PVINYYAR--RGKLYTI-NAVGTVDEIFEQVRAVF 188 (196)
Q Consensus 157 ~~~~~~~~--~~~~~~I-~~~~~~~~v~~~i~~~i 188 (196)
.+..+|+. ...+++| |.++.+++..+++.+.+
T Consensus 153 ~~a~~~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii 187 (188)
T PRK04040 153 AAAMAYAVLTGATVKIVENREGLLEEAAEEIVEVL 187 (188)
T ss_pred HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence 23344443 3344444 44444888888877765
No 51
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.73 E-value=4.7e-16 Score=114.81 Aligned_cols=172 Identities=14% Similarity=0.210 Sum_probs=91.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCceechh-HHHHH-HHhcCChhhH------HHHHHhhcCC---CCCHHH-------
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAG-ELLRR-EIASNSEYGT------TILNTIKEGK---IVPSEV------- 72 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~-~~~~~-~~~~~~~~~~------~~~~~l~~~~---~~~~~~------- 72 (196)
+|+|+|..||||||+++.|+++++..++... ..... .-+.+...+. .++....... ......
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~ 80 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSS 80 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHH
Confidence 4889999999999999999999986554332 11100 0001111111 1222222211 111110
Q ss_pred HHHHHHHHHh--cCCCCcEEEeCCCCCHHHH------------------HHHHHH---hCCCCcEEEEeecChHHHHHHH
Q 029287 73 TVSLIQKEME--SSDSKKFLIDGFPRSEENR------------------AAFERI---MGAEPDIVLFFDCPEEEMVNRV 129 (196)
Q Consensus 73 ~~~~i~~~l~--~~~~~~~iid~~~~~~~~~------------------~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl 129 (196)
..+.+.+... ...+..+|+|++..+.... ..+... ..+.||++||||+|++.+.+|+
T Consensus 81 R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~Ri 160 (219)
T cd02030 81 RLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKRI 160 (219)
T ss_pred HHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHH
Confidence 1111122111 1235678999986542111 011111 1267999999999999999999
Q ss_pred hhccCCCC-CCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCC--CCHhHHHHHHH
Q 029287 130 LNRNEGRV-DDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAV--GTVDEIFEQVR 185 (196)
Q Consensus 130 ~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~--~~~~~v~~~i~ 185 (196)
.+|+.... ..+.+.++.....|.....+ .|.....+++||++ .+++++.++|.
T Consensus 161 ~~R~~~~e~~~~~~yl~~l~~~y~~~~~~---~~~~~~~~i~id~~~~~~~e~i~~~I~ 216 (219)
T cd02030 161 KKRGDPHEMKVTSAYLQDIENAYKKTFLP---EISEHSEVLQYDWTEAGDTEKVVEDIE 216 (219)
T ss_pred HHcCCchhhcccHHHHHHHHHHHHHHHHH---hhccCCCEEEEeCCChhhHHHHHHHHH
Confidence 98832111 11334444333444444211 13345689999988 77887777654
No 52
>PRK13949 shikimate kinase; Provisional
Probab=99.73 E-value=8.9e-16 Score=108.78 Aligned_cols=157 Identities=16% Similarity=0.239 Sum_probs=90.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhh-cCCCCCHHHHHHHHHHHHhcCCCCc
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIK-EGKIVPSEVTVSLIQKEMESSDSKK 88 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~i~~~l~~~~~~~ 88 (196)
..|+|+|++||||||+++.|++.+++.+++.|.++.+.... .+.+... .|...+.......+.+ +.. ...
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~------~~~~~~~~~g~~~fr~~e~~~l~~-l~~--~~~ 72 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHK------TVGDIFAERGEAVFRELERNMLHE-VAE--FED 72 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCc------cHHHHHHHhCHHHHHHHHHHHHHH-HHh--CCC
Confidence 46889999999999999999999999999999887654322 1222221 1222222222333333 322 223
Q ss_pred EEE-e--CCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCC---cHHHHHHH-HHHHHhchHhHHHH
Q 029287 89 FLI-D--GFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDD---NIDTVRKR-LQVFKALNLPVINY 161 (196)
Q Consensus 89 ~ii-d--~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~ 161 (196)
+|+ . +++....++..+. ..+++|||++|++.+.+|+..+..+|+.. ..+.+.+. ...|... ...
T Consensus 73 ~vis~Ggg~~~~~~~~~~l~-----~~~~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~i~~l~~~R----~~~ 143 (169)
T PRK13949 73 VVISTGGGAPCFFDNMELMN-----ASGTTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELLDFIIEALEKR----APF 143 (169)
T ss_pred EEEEcCCcccCCHHHHHHHH-----hCCeEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHH----HHH
Confidence 444 3 3444444454443 35788999999999999998543344322 11222211 1233333 333
Q ss_pred HHhcCcEEEEeC-CCCHhHHHHHHHH
Q 029287 162 YARRGKLYTINA-VGTVDEIFEQVRA 186 (196)
Q Consensus 162 ~~~~~~~~~I~~-~~~~~~v~~~i~~ 186 (196)
|.. ++ ++||. +.+++++.+.|.+
T Consensus 144 Y~~-ad-~~id~~~~~~~e~~~~I~~ 167 (169)
T PRK13949 144 YRQ-AK-IIFNADKLEDESQIEQLVQ 167 (169)
T ss_pred HHh-CC-EEEECCCCCHHHHHHHHHH
Confidence 443 34 56664 4478887777654
No 53
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.71 E-value=6.6e-16 Score=107.63 Aligned_cols=157 Identities=18% Similarity=0.318 Sum_probs=98.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCCC
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE-GKIVPSEVTVSLIQKEMESSDSK 87 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~i~~~l~~~~~~ 87 (196)
.+.|+|+|+.||||||+++.|++.+++.++|.|..+.+... ..+.+.... |...+...-...+.+..... .
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g------~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~--~ 73 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTG------MSIAEIFEEEGEEGFRRLETEVLKELLEED--N 73 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHC------cCHHHHHHHHhHHHHHHHHHHHHHHHhhcC--C
Confidence 35688899999999999999999999999999999877432 233333332 33333333344455555532 2
Q ss_pred cEEEe--CCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCC---cH-----HHHHHHHHHHHhchHh
Q 029287 88 KFLID--GFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDD---NI-----DTVRKRLQVFKALNLP 157 (196)
Q Consensus 88 ~~iid--~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~---~~-----~~~~~~~~~~~~~~~~ 157 (196)
.+|.- |.....+.+..+.. -.++|||++|++++++|+.... .|+.- +. +.+++|...|.+.
T Consensus 74 ~ViaTGGG~v~~~enr~~l~~-----~g~vv~L~~~~e~l~~Rl~~~~-~RPll~~~~~~~~l~~L~~~R~~~Y~e~--- 144 (172)
T COG0703 74 AVIATGGGAVLSEENRNLLKK-----RGIVVYLDAPFETLYERLQRDR-KRPLLQTEDPREELEELLEERQPLYREV--- 144 (172)
T ss_pred eEEECCCccccCHHHHHHHHh-----CCeEEEEeCCHHHHHHHhcccc-CCCcccCCChHHHHHHHHHHHHHHHHHh---
Confidence 33322 34444555555443 3478999999999999999332 33311 22 2233333444333
Q ss_pred HHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287 158 VINYYARRGKLYTINAVGTVDEIFEQVRAVFAAL 191 (196)
Q Consensus 158 ~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~ 191 (196)
..++++.+...+++.++|.+.+...
T Consensus 145 ---------a~~~~~~~~~~~~v~~~i~~~l~~~ 169 (172)
T COG0703 145 ---------ADFIIDTDDRSEEVVEEILEALEGS 169 (172)
T ss_pred ---------CcEEecCCCCcHHHHHHHHHHHHHh
Confidence 3356776666688888887777654
No 54
>PRK08118 topology modulation protein; Reviewed
Probab=99.71 E-value=4.3e-16 Score=110.19 Aligned_cols=97 Identities=21% Similarity=0.345 Sum_probs=69.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF 89 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~ 89 (196)
+.|+|+|++||||||+++.|++.+++.+++.|.+++..- ....++......+...+. ...|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~----------------w~~~~~~~~~~~~~~~~~---~~~w 62 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPN----------------WEGVPKEEQITVQNELVK---EDEW 62 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccC----------------CcCCCHHHHHHHHHHHhc---CCCE
Confidence 578899999999999999999999999999988875310 011222333333334333 3569
Q ss_pred EEeCCCC-CHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhc
Q 029287 90 LIDGFPR-SEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNR 132 (196)
Q Consensus 90 iid~~~~-~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r 132 (196)
|+||... ....+. ..+|.+||||+|.+.+..|+.+|
T Consensus 63 VidG~~~~~~~~~l-------~~~d~vi~Ld~p~~~~~~R~~~R 99 (167)
T PRK08118 63 IIDGNYGGTMDIRL-------NAADTIIFLDIPRTICLYRAFKR 99 (167)
T ss_pred EEeCCcchHHHHHH-------HhCCEEEEEeCCHHHHHHHHHHH
Confidence 9999543 332111 25899999999999999999988
No 55
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.70 E-value=2.7e-15 Score=103.64 Aligned_cols=154 Identities=15% Similarity=0.289 Sum_probs=93.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF 89 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~ 89 (196)
|.|+|+|.||+||||+|+.|+ .+|+.+++..+++.+.--.. ... -.+....+....+...+...+. ....
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~~~~-~~d-----e~r~s~~vD~d~~~~~le~~~~---~~~~ 70 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENGLYT-EYD-----ELRKSVIVDVDKLRKRLEELLR---EGSG 70 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcCCee-ccC-----CccceEEeeHHHHHHHHHHHhc---cCCe
Confidence 578999999999999999999 88999999888776531110 000 0000111222333333343331 3445
Q ss_pred EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHH-HHHHhchHhHHHHHHhcCcE
Q 029287 90 LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRL-QVFKALNLPVINYYARRGKL 168 (196)
Q Consensus 90 iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 168 (196)
|+++... .+.+.+|++|+|.++|+.+.+||..| +... ....++.. +.+.--.....+. ..++
T Consensus 71 Ivd~H~~----------hl~~~~dlVvVLR~~p~~L~~RLk~R--Gy~~--eKI~ENveAEi~~vi~~EA~E~---~~~v 133 (180)
T COG1936 71 IVDSHLS----------HLLPDCDLVVVLRADPEVLYERLKGR--GYSE--EKILENVEAEILDVILIEAVER---FEAV 133 (180)
T ss_pred Eeechhh----------hcCCCCCEEEEEcCCHHHHHHHHHHc--CCCH--HHHHHHHHHHHHHHHHHHHHHh---cCce
Confidence 6776531 12225899999999999999999999 3322 22222211 1111111111222 2567
Q ss_pred EEEe-CCCCHhHHHHHHHHHHHh
Q 029287 169 YTIN-AVGTVDEIFEQVRAVFAA 190 (196)
Q Consensus 169 ~~I~-~~~~~~~v~~~i~~~i~~ 190 (196)
+.|| .+.+++++.+.|..++..
T Consensus 134 ~evdtt~~s~ee~~~~i~~ii~~ 156 (180)
T COG1936 134 IEVDTTNRSPEEVAEEIIDIIGG 156 (180)
T ss_pred EEEECCCCCHHHHHHHHHHHHcc
Confidence 7887 578999999999998874
No 56
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.70 E-value=1.2e-15 Score=108.62 Aligned_cols=154 Identities=16% Similarity=0.271 Sum_probs=90.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCCCc
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE-GKIVPSEVTVSLIQKEMESSDSKK 88 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~i~~~l~~~~~~~ 88 (196)
..|+|+|++||||||+++.|++.+|+.+++.|.+....... . +.+.+.. +...........+ +.+. ....
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g~--~----~~~~~~~~g~~~~~~~e~~~~-~~~~--~~~~ 73 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSNM--T----VAEIVEREGWAGFRARESAAL-EAVT--APST 73 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhCC--C----HHHHHHHHCHHHHHHHHHHHH-HHhc--CCCe
Confidence 46788999999999999999999999999998887654221 1 1111111 1111111112222 2222 2233
Q ss_pred EEEeC--CCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccC--CCCCC--------cHHHHHHHHHHHHhchH
Q 029287 89 FLIDG--FPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNE--GRVDD--------NIDTVRKRLQVFKALNL 156 (196)
Q Consensus 89 ~iid~--~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~--~~~~~--------~~~~~~~~~~~~~~~~~ 156 (196)
+|.-| ++.....+..+. ..+++|||++|++.+.+|+..|.. .|... ..+.+++|...|...
T Consensus 74 vi~~ggg~vl~~~~~~~l~-----~~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~~~y~~~-- 146 (171)
T PRK03731 74 VIATGGGIILTEENRHFMR-----NNGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAEREALYREV-- 146 (171)
T ss_pred EEECCCCccCCHHHHHHHH-----hCCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHHHHHHHh--
Confidence 33222 333344443332 467899999999999999987631 12211 112222233333221
Q ss_pred hHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287 157 PVINYYARRGKLYTINAVGTVDEIFEQVRAVFA 189 (196)
Q Consensus 157 ~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~ 189 (196)
..++||++++++++.+++.+.+.
T Consensus 147 ----------a~~~Id~~~~~e~v~~~i~~~l~ 169 (171)
T PRK03731 147 ----------AHHIIDATQPPSQVVSEILSALA 169 (171)
T ss_pred ----------CCEEEcCCCCHHHHHHHHHHHHh
Confidence 23689999999999999887764
No 57
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.68 E-value=8.7e-16 Score=118.68 Aligned_cols=163 Identities=23% Similarity=0.341 Sum_probs=101.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHh-CCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCC
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNY-GLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSK 87 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~ 87 (196)
+.+|++.|+|||||||+++.|++++ +..+++.|++.. .+......+.. .+...+...........+...+. .+.
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~--~g~ 76 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQ-SLFGHGEWGEY--KFTKEKEDLVTKAQEAAALAALK--SGK 76 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHH-HhcCCCccccc--ccChHHHHHHHHHHHHHHHHHHH--cCC
Confidence 5688889999999999999999999 899999876543 32221110000 00000000000111222333333 346
Q ss_pred cEEEeCCCCCHHHHHHHHHH---hCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHH---HHHHHHHhchHhHHHH
Q 029287 88 KFLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVR---KRLQVFKALNLPVINY 161 (196)
Q Consensus 88 ~~iid~~~~~~~~~~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 161 (196)
.+|+|+++.+..++..+... ....+. +++|++|.+++.+|+.+| +......+.++ ++++.|.....+.+..
T Consensus 77 ~vIid~~~~~~~~~~~~~~la~~~~~~~~-~v~l~~~~e~~~~R~~~R--~~~~~~~~~i~~~~~~~~~~~~~~~p~~~~ 153 (300)
T PHA02530 77 SVIISDTNLNPERRRKWKELAKELGAEFE-EKVFDVPVEELVKRNRKR--GERAVPEDVLRSMFKQMKEYRGLVWPVYTA 153 (300)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCeEE-EEEeCCCHHHHHHHHHcc--CcCCCCHHHHHHHHHHHHHhcCCCCceecc
Confidence 68999999887777666543 222233 489999999999999999 33334555555 6667777766677666
Q ss_pred HHhcCcEEEEeCCCCHhH
Q 029287 162 YARRGKLYTINAVGTVDE 179 (196)
Q Consensus 162 ~~~~~~~~~I~~~~~~~~ 179 (196)
+.....++.+|.++++.+
T Consensus 154 ~~~~~~~~~~D~dgtl~~ 171 (300)
T PHA02530 154 DPGLPKAVIFDIDGTLAK 171 (300)
T ss_pred CCCCCCEEEEECCCcCcC
Confidence 655567777887766554
No 58
>PRK06762 hypothetical protein; Provisional
Probab=99.68 E-value=1.2e-14 Score=102.85 Aligned_cols=157 Identities=15% Similarity=0.240 Sum_probs=92.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHh--CCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCC
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNY--GLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDS 86 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~ 86 (196)
|++|+|.|++||||||+++.|++.+ +..+++.+.+ ++.+..... .. ...............+. .+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~-r~~l~~~~~---------~~-~~~~~~~~~~~~~~~~~--~g 68 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVV-RRDMLRVKD---------GP-GNLSIDLIEQLVRYGLG--HC 68 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHH-HHHhccccC---------CC-CCcCHHHHHHHHHHHHh--CC
Confidence 6789999999999999999999998 4556676544 332221110 00 00111222222222232 34
Q ss_pred CcEEEeCCCCCHHHHHHHHHH--hCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHh
Q 029287 87 KKFLIDGFPRSEENRAAFERI--MGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYAR 164 (196)
Q Consensus 87 ~~~iid~~~~~~~~~~~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (196)
..+|+|+.......+..+... ....+..++|||+|++++.+|..+|.... ....+.+..++..+....
T Consensus 69 ~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~-~~~~~~l~~~~~~~~~~~--------- 138 (166)
T PRK06762 69 EFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSH-EFGEDDMRRWWNPHDTLG--------- 138 (166)
T ss_pred CEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccc-cCCHHHHHHHHhhcCCcC---------
Confidence 667888875543333323222 12236678999999999999999884221 224555555433322221
Q ss_pred cCcEEEEeCCCCHhHHHHHHHHHH
Q 029287 165 RGKLYTINAVGTVDEIFEQVRAVF 188 (196)
Q Consensus 165 ~~~~~~I~~~~~~~~v~~~i~~~i 188 (196)
....+.++.+.+++++.+++...+
T Consensus 139 ~~~~~~~~~~~~~~~v~~~i~~~~ 162 (166)
T PRK06762 139 VIGETIFTDNLSLKDIFDAILTDI 162 (166)
T ss_pred CCCeEEecCCCCHHHHHHHHHHHh
Confidence 123355667789999998877654
No 59
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.67 E-value=4.9e-16 Score=110.77 Aligned_cols=152 Identities=23% Similarity=0.316 Sum_probs=93.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcC-----CCCCH--------------
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEG-----KIVPS-------------- 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~-------------- 70 (196)
|+|+|+|..||||||+++.|++ +|+.+++.|.+.++...++.+....+.+.+... ..++.
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 6899999999999999999999 799999999999888777777666666544322 11211
Q ss_pred ----HHHHHHHHHHHh----cCCC-CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcH
Q 029287 71 ----EVTVSLIQKEME----SSDS-KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNI 141 (196)
Q Consensus 71 ----~~~~~~i~~~l~----~~~~-~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~ 141 (196)
..+++.+.+.+. .... ..++++ .|. .+...+...+|.++++.+|+++..+|+.+|+ ..+.
T Consensus 80 ~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e-~pL------L~E~~~~~~~D~vi~V~a~~e~ri~Rl~~R~----~~~~ 148 (180)
T PF01121_consen 80 KKLENIIHPLIREEIEKFIKRNKSEKVVVVE-IPL------LFESGLEKLCDEVIVVYAPEEIRIKRLMERD----GLSE 148 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE--TT------TTTTTGGGGSSEEEEEE--HHHHHHHHHHHH----TSTH
T ss_pred HHHHHHHhHHHHHHHHHHHHhccCCCEEEEE-cch------hhhhhHhhhhceEEEEECCHHHHHHHHHhhC----CCcH
Confidence 233455444444 2222 445555 442 2222334468999999999999999999983 3355
Q ss_pred HHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhH
Q 029287 142 DTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDE 179 (196)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~ 179 (196)
+.++.++....+... ....++ ++|+++++.++
T Consensus 149 ~~~~~ri~~Q~~~~~--k~~~ad----~vI~N~g~~~~ 180 (180)
T PF01121_consen 149 EEAEARIASQMPDEE--KRKRAD----FVIDNNGSLEE 180 (180)
T ss_dssp HHHHHHHHTS--HHH--HHHH-S----EEEE-SSHHH-
T ss_pred HHHHHHHHhCCCHHH--HHHhCC----EEEECCCCCCC
Confidence 666655443333322 112222 57888887664
No 60
>PRK04182 cytidylate kinase; Provisional
Probab=99.67 E-value=2.9e-14 Score=102.11 Aligned_cols=170 Identities=18% Similarity=0.223 Sum_probs=92.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF 89 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~ 89 (196)
|+|+|.|++||||||+++.|++.+|+.+++.+++++............+.+.... ...........+.... . ....+
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~-~~~~~ 77 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFNKYAEE-DPEIDKEIDRRQLEIA-E-KEDNV 77 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHHHHhhc-CchHHHHHHHHHHHHH-h-cCCCE
Confidence 4799999999999999999999999999998888776433221111112111111 1111111222222221 1 23456
Q ss_pred EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCC-cHHHHHHHHHHHHhchHhHHHHHH----h
Q 029287 90 LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDD-NIDTVRKRLQVFKALNLPVINYYA----R 164 (196)
Q Consensus 90 iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~ 164 (196)
|+++..... .....++++|||++|++++.+|+..|. ++... ....++++.. .....+...|. .
T Consensus 78 Vi~g~~~~~--------~~~~~~~~~V~l~a~~e~~~~Rl~~r~-~~~~~~a~~~~~~~d~---~~~~~~~~~~~~~~~~ 145 (180)
T PRK04182 78 VLEGRLAGW--------MAKDYADLKIWLKAPLEVRAERIAERE-GISVEEALEETIEREE---SEAKRYKEYYGIDIDD 145 (180)
T ss_pred EEEEeecce--------EecCCCCEEEEEECCHHHHHHHHHhcc-CCCHHHHHHHHHHHHH---HHHHHHHHHhCCCccc
Confidence 677632110 011237899999999999999999873 22111 1111111111 11111111111 0
Q ss_pred -cCcEEEEeC-CCCHhHHHHHHHHHHHhhhhh
Q 029287 165 -RGKLYTINA-VGTVDEIFEQVRAVFAALKLV 194 (196)
Q Consensus 165 -~~~~~~I~~-~~~~~~v~~~i~~~i~~~~~~ 194 (196)
...-++||+ ..+++++.+.|.+.+......
T Consensus 146 ~~~~d~~idt~~~~~~~~~~~I~~~~~~~~~~ 177 (180)
T PRK04182 146 LSIYDLVINTSRWDPEGVFDIILTAIDKLLKA 177 (180)
T ss_pred cccccEEEECCCCCHHHHHHHHHHHHHHHhcc
Confidence 112245775 468999999998888766543
No 61
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.67 E-value=3.1e-15 Score=107.14 Aligned_cols=128 Identities=23% Similarity=0.351 Sum_probs=85.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCC-----CCC----------------
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGK-----IVP---------------- 69 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~---------------- 69 (196)
+|+|+|++||||||+++.|++ +|+.+++.|++.++....+.+....+.+...... .+.
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~ 79 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence 489999999999999999999 8999999999999887777776666666553321 111
Q ss_pred --HHHHHHHHHHHHh----cCCC-CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHH
Q 029287 70 --SEVTVSLIQKEME----SSDS-KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNID 142 (196)
Q Consensus 70 --~~~~~~~i~~~l~----~~~~-~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~ 142 (196)
...+++.+...+. .... ..++++ .| +.+...+...+|.++++++|+++..+|+.+|+ ..+.+
T Consensus 80 ~l~~i~hp~i~~~~~~~~~~~~~~~~vive-~p------lL~e~~~~~~~D~vv~V~a~~~~ri~Rl~~Rd----~~s~~ 148 (179)
T cd02022 80 KLEAITHPLIRKEIEEQLAEARKEKVVVLD-IP------LLFETGLEKLVDRVIVVDAPPEIQIERLMKRD----GLSEE 148 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCEEEEE-eh------HhhcCCcHHhCCeEEEEECCHHHHHHHHHHcC----CCCHH
Confidence 1233444444433 2222 344455 33 22222223367999999999999999999883 23555
Q ss_pred HHHHHHHH
Q 029287 143 TVRKRLQV 150 (196)
Q Consensus 143 ~~~~~~~~ 150 (196)
.+.+++..
T Consensus 149 ~~~~r~~~ 156 (179)
T cd02022 149 EAEARIAS 156 (179)
T ss_pred HHHHHHHh
Confidence 55555544
No 62
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.66 E-value=3.2e-15 Score=119.00 Aligned_cols=166 Identities=20% Similarity=0.255 Sum_probs=101.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcC-----CCCCH--------------
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEG-----KIVPS-------------- 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~-------------- 70 (196)
++|+|+|++||||||+++.|++ +|+.+++.|.+.++.+..+.+....+.+..... ..++.
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~ 80 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR 80 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 5799999999999999999997 799999999998887776655444444333221 11111
Q ss_pred ----HHHHHHHHHHH----hcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHH
Q 029287 71 ----EVTVSLIQKEM----ESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNID 142 (196)
Q Consensus 71 ----~~~~~~i~~~l----~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~ 142 (196)
..+++.+...+ ...+...+++.+.|. .+...+...+|.+|++++|++++.+|+.+|+ + .+.+
T Consensus 81 ~~le~i~hP~I~~~i~~~i~~~~~~~vvv~eipL------L~E~~~~~~~D~iI~V~ap~e~ri~Rl~~rR-g---~s~~ 150 (395)
T PRK03333 81 AVLNGIVHPLVGARRAELIAAAPEDAVVVEDIPL------LVESGMAPLFHLVVVVDADVEVRVRRLVEQR-G---MAEA 150 (395)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCCEEEEEeee------eecCCchhhCCEEEEEECCHHHHHHHHHhcC-C---CCHH
Confidence 12344444332 222334455555442 1111222357999999999999999998853 2 2223
Q ss_pred HHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287 143 TVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192 (196)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~ 192 (196)
....+....... ...... ..++|+++++.+++..++...+...+
T Consensus 151 ~a~~ri~~Q~~~--e~k~~~----AD~vIdN~~s~e~l~~~v~~~l~~~~ 194 (395)
T PRK03333 151 DARARIAAQASD--EQRRAV----ADVWLDNSGTPDELVEAVRALWADRL 194 (395)
T ss_pred HHHHHHHhcCCh--HHHHHh----CCEEEECCCCHHHHHHHHHHHHHHHH
Confidence 333332221111 111111 23568899999999999888776654
No 63
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.66 E-value=4e-15 Score=103.43 Aligned_cols=172 Identities=23% Similarity=0.330 Sum_probs=112.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHH-----------HHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT-----------VSLI 77 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----------~~~i 77 (196)
-.+|++.|.++|||||++..|.+.+ +...+. ....+...-.+..|..+..++.+....++..+ .+.|
T Consensus 5 g~liV~eGlDrsgKstQ~~~l~~~l-~~~~~~-~~l~~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~~i 82 (208)
T KOG3327|consen 5 GALIVLEGLDRSGKSTQCGKLVESL-IPGLDP-AELLRFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVSLI 82 (208)
T ss_pred ccEEeeeccccCCceeehhHHHHHH-HhccCh-HHhhhcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHHHH
Confidence 3688889999999999999999887 222221 22233334445678888888887766665433 3445
Q ss_pred HHHHhcCCCCcEEEeCCCCCHHHHHHHHH-----------HhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH
Q 029287 78 QKEMESSDSKKFLIDGFPRSEENRAAFER-----------IMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK 146 (196)
Q Consensus 78 ~~~l~~~~~~~~iid~~~~~~~~~~~~~~-----------~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~ 146 (196)
.+.+. .+..+|+|+|..+-...- .++ .-.++||+++||++||+. ..|....+..| .++.+..++
T Consensus 83 ~e~l~--kg~~~ivDRY~~SGvAyS-~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~-~a~rggfG~Er-ye~v~fqek 157 (208)
T KOG3327|consen 83 KEKLA--KGTTLIVDRYSFSGVAYS-AAKGLDLDWCKQPDVGLPKPDLVLFLDVSPED-AARRGGFGEER-YETVAFQEK 157 (208)
T ss_pred HHHHh--cCCeEEEecceecchhhh-hhcCCCcchhhCCccCCCCCCeEEEEeCCHHH-HHHhcCcchhH-HHHHHHHHH
Confidence 55554 356689999987632211 111 125789999999999999 44444442122 123444444
Q ss_pred HHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287 147 RLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKL 193 (196)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~ 193 (196)
....|....+ .+..++.++|++.++++|.+.|..+++.++.
T Consensus 158 v~~~~q~l~r------~e~~~~~~vDAs~sve~V~~~V~~i~e~~~~ 198 (208)
T KOG3327|consen 158 VLVFFQKLLR------KEDLNWHVVDASKSVEKVHQQVRSLVENVLS 198 (208)
T ss_pred HHHHHHHHHh------ccCCCeEEEecCccHHHHHHHHHHHHHHhcc
Confidence 4555555421 2456889999999999999999988887764
No 64
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.66 E-value=7.3e-15 Score=98.74 Aligned_cols=153 Identities=14% Similarity=0.176 Sum_probs=101.1
Q ss_pred EcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHH---HHHHHHhc--CCCCcE
Q 029287 15 LGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVS---LIQKEMES--SDSKKF 89 (196)
Q Consensus 15 ~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~i~~~l~~--~~~~~~ 89 (196)
+|.+||||||++..|++.+|+.+++.|++.... ..+.+..|.+++++-..+ .+...+.. ..+...
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~a----------Ni~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~ 70 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPA----------NIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHV 70 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHH----------HHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCce
Confidence 499999999999999999999999998775432 445566777776543321 12222221 123345
Q ss_pred EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEE
Q 029287 90 LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLY 169 (196)
Q Consensus 90 iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (196)
|+-+.......+..+... .+. -.+|||+.+++++.+|+..|. .+....+.+..++...+.... ...++
T Consensus 71 vi~CSALKr~YRD~LR~~-~~~-~~Fv~L~g~~~~i~~Rm~~R~--gHFM~~~ll~SQfa~LE~P~~--------de~vi 138 (161)
T COG3265 71 VIACSALKRSYRDLLREA-NPG-LRFVYLDGDFDLILERMKARK--GHFMPASLLDSQFATLEEPGA--------DEDVL 138 (161)
T ss_pred EEecHHHHHHHHHHHhcc-CCC-eEEEEecCCHHHHHHHHHhcc--cCCCCHHHHHHHHHHhcCCCC--------CCCEE
Confidence 566554443344443332 222 235999999999999999993 344467777776666655522 12688
Q ss_pred EEeCCCCHhHHHHHHHHHHH
Q 029287 170 TINAVGTVDEIFEQVRAVFA 189 (196)
Q Consensus 170 ~I~~~~~~~~v~~~i~~~i~ 189 (196)
.||.+.+++++.+++...+.
T Consensus 139 ~idi~~~~e~vv~~~~~~l~ 158 (161)
T COG3265 139 TIDIDQPPEEVVAQALAWLK 158 (161)
T ss_pred EeeCCCCHHHHHHHHHHHHh
Confidence 89999999999888766554
No 65
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.66 E-value=5.1e-15 Score=106.91 Aligned_cols=158 Identities=20% Similarity=0.270 Sum_probs=98.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhc-----CCCCCH---------------
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE-----GKIVPS--------------- 70 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~--------------- 70 (196)
+|+|+|.+||||||+++.|++..|+.+++.|++.++.+..+.+....+.+.... ...+..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~ 80 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK 80 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence 489999999999999999999977999999999988877766555554433321 111111
Q ss_pred ---HHHH----HHHHHHHhcC--CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcH
Q 029287 71 ---EVTV----SLIQKEMESS--DSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNI 141 (196)
Q Consensus 71 ---~~~~----~~i~~~l~~~--~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~ 141 (196)
..++ ..+.+.+... .+..++++ .|.- +...+...+|.++++++|++++.+|+.+|+ ..+.
T Consensus 81 ~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~-~pll------~e~~~~~~~D~vv~V~~~~~~~~~Rl~~R~----~~s~ 149 (188)
T TIGR00152 81 WLNNLLHPLIREWMKKLLAQFQSKLAYVLLD-VPLL------FENKLRSLCDRVIVVDVSPQLQLERLMQRD----NLTE 149 (188)
T ss_pred HHHHhhCHHHHHHHHHHHHHhhcCCCEEEEE-chHh------hhCCcHHhCCEEEEEECCHHHHHHHHHHcC----CCCH
Confidence 1112 2223332221 12234444 4321 111122357899999999999999999983 3355
Q ss_pred HHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHH
Q 029287 142 DTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVR 185 (196)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~ 185 (196)
+.+.+|+...... ... ... .-++|+++++++++..++.
T Consensus 150 ~~~~~r~~~q~~~----~~~-~~~-ad~vI~N~~~~e~l~~~~~ 187 (188)
T TIGR00152 150 EEVQKRLASQMDI----EER-LAR-ADDVIDNSATLADLVKQLE 187 (188)
T ss_pred HHHHHHHHhcCCH----HHH-HHh-CCEEEECCCCHHHHHHHHh
Confidence 6666665554322 111 111 2256888999999988764
No 66
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=99.66 E-value=3e-14 Score=100.43 Aligned_cols=164 Identities=21% Similarity=0.288 Sum_probs=111.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCC-----CCCHH------------
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGK-----IVPSE------------ 71 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~------------ 71 (196)
|++++|+|..||||||+++.+. .+|++++|+|.+.|+...++.+....+.+.....- .++..
T Consensus 1 M~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~ 79 (225)
T KOG3220|consen 1 MLIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKK 79 (225)
T ss_pred CeEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHH
Confidence 4799999999999999999888 66999999999999999999888777766554321 11110
Q ss_pred ------HHHHHHHHHHh-------cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCC
Q 029287 72 ------VTVSLIQKEME-------SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVD 138 (196)
Q Consensus 72 ------~~~~~i~~~l~-------~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~ 138 (196)
..++.|...+- ..+...+|+| .| +.|+..+......++.+.||.+...+|+..| ++
T Consensus 80 r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlD-iP------LLFE~~~~~~~~~tvvV~cd~~~Ql~Rl~~R----d~ 148 (225)
T KOG3220|consen 80 RQALNKITHPAIRKEMFKEILKLLLRGYRVIVLD-IP------LLFEAKLLKICHKTVVVTCDEELQLERLVER----DE 148 (225)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEe-ch------HHHHHhHHhheeeEEEEEECcHHHHHHHHHh----cc
Confidence 11222222111 1233444454 55 4454444445667789999999999999999 35
Q ss_pred CcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHh
Q 029287 139 DNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAA 190 (196)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~ 190 (196)
.+.+..++|.....+..... +. .-++|++++++++..+++......
T Consensus 149 lse~dAe~Rl~sQmp~~~k~-----~~-a~~Vi~Nng~~~~l~~qv~~v~~~ 194 (225)
T KOG3220|consen 149 LSEEDAENRLQSQMPLEKKC-----EL-ADVVIDNNGSLEDLYEQVEKVLAL 194 (225)
T ss_pred ccHHHHHHHHHhcCCHHHHH-----Hh-hheeecCCCChHHHHHHHHHHHHH
Confidence 56777777766554443311 11 125789999999999998776543
No 67
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=99.65 E-value=4.9e-15 Score=107.42 Aligned_cols=156 Identities=15% Similarity=0.215 Sum_probs=82.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCH----HH---HHHHHHHHHh-
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPS----EV---TVSLIQKEME- 82 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~---~~~~i~~~l~- 82 (196)
+|+|+|++||||||+++.|++++|...+....- .. ....+. ++........... .. ..+.+.+...
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep~~-~~--~~~~~~---l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~ 74 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPVE-PD--VEGNPF---LEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEH 74 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCcccccccc-cc--CCCCCC---HHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence 478999999999999999999887654432110 00 000011 1111111000000 00 1111111111
Q ss_pred cCCCCcEEEeCCCCCHHH---------------HH---HHHHHh---CCCCcEEEEeecChHHHHHHHhhccCCCC-CCc
Q 029287 83 SSDSKKFLIDGFPRSEEN---------------RA---AFERIM---GAEPDIVLFFDCPEEEMVNRVLNRNEGRV-DDN 140 (196)
Q Consensus 83 ~~~~~~~iid~~~~~~~~---------------~~---~~~~~~---~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~-~~~ 140 (196)
...+..+|+|+++.+... .. .+...+ ...||++||||+|++++.+|+.+|..... ..+
T Consensus 75 ~~~~~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R~r~~e~~~~ 154 (193)
T cd01673 75 LSTGQGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRGRPEEQGIP 154 (193)
T ss_pred cccCCceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhcCcHhhhcCC
Confidence 124678899998865221 11 111111 35799999999999999999998832111 113
Q ss_pred HHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCC
Q 029287 141 IDTVRKRLQVFKALNLPVINYYARRGKLYTINAVG 175 (196)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~ 175 (196)
.+.+++....|..+.... .....++++||++.
T Consensus 155 ~~~~~~l~~~y~~~~~~~---~~~~~~~~vid~~~ 186 (193)
T cd01673 155 LDYLEDLHEAYEKWFLPQ---MYEKAPVLIIDANE 186 (193)
T ss_pred HHHHHHHHHHHHHHHhhc---cCCCCCEEEEECCc
Confidence 444444444555542211 11246888999875
No 68
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.65 E-value=4.4e-14 Score=99.73 Aligned_cols=155 Identities=14% Similarity=0.158 Sum_probs=87.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH-----HHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCC
Q 029287 12 CFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR-----EIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDS 86 (196)
Q Consensus 12 i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~ 86 (196)
|+|.|++||||||+++.|++.++..+++.+++... ..............+ -......+...+.. +
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~--~ 70 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLNDDDRWPW--------LQNLNDASTAAAAK--N 70 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCChhhHHHH--------HHHHHHHHHHHHhc--C
Confidence 46899999999999999999999999998776322 111110000000000 01112233333332 2
Q ss_pred CcEEEeCCCCCHHHHHHHHHHhCCCCcE-EEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhc
Q 029287 87 KKFLIDGFPRSEENRAAFERIMGAEPDI-VLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARR 165 (196)
Q Consensus 87 ~~~iid~~~~~~~~~~~~~~~~~~~p~~-~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (196)
...|++.-......+..+. .. .+++ ++||++|++++.+|+..|.. .....+.++.+...+.... .+.
T Consensus 71 ~~~Vi~~t~~~~~~r~~~~-~~--~~~~~~i~l~~~~e~~~~R~~~R~~--~~~~~~~i~~~~~~~~~~~-------~~e 138 (163)
T TIGR01313 71 KVGIITCSALKRHYRDILR-EA--EPNLHFIYLSGDKDVILERMKARKG--HFMKADMLESQFAALEEPL-------ADE 138 (163)
T ss_pred CCEEEEecccHHHHHHHHH-hc--CCCEEEEEEeCCHHHHHHHHHhccC--CCCCHHHHHHHHHHhCCCC-------CCC
Confidence 2335554333333333332 22 2333 59999999999999998841 1223444444433222110 112
Q ss_pred CcEEEEeCCCCHhHHHHHHHHHH
Q 029287 166 GKLYTINAVGTVDEIFEQVRAVF 188 (196)
Q Consensus 166 ~~~~~I~~~~~~~~v~~~i~~~i 188 (196)
..+.+||++++++++.+++.+.+
T Consensus 139 ~~~~~id~~~~~~~~~~~~~~~~ 161 (163)
T TIGR01313 139 TDVLRVDIDQPLEGVEEDCIAVV 161 (163)
T ss_pred CceEEEECCCCHHHHHHHHHHHH
Confidence 36788999999999998877665
No 69
>PRK13946 shikimate kinase; Provisional
Probab=99.64 E-value=3e-14 Score=102.48 Aligned_cols=165 Identities=21% Similarity=0.266 Sum_probs=96.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCC
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSK 87 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~ 87 (196)
.++.|+++|++||||||+++.|++.+|+.+++.|..+.+.. +..... +.+. .|...........+...+.. ..
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~--g~~~~e-~~~~--~ge~~~~~~e~~~l~~l~~~--~~ 81 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAA--RMTIAE-IFAA--YGEPEFRDLERRVIARLLKG--GP 81 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh--CCCHHH-HHHH--HCHHHHHHHHHHHHHHHHhc--CC
Confidence 45689999999999999999999999999999987765542 112111 1111 11111112223333333332 23
Q ss_pred cEEEeCCC--CCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCC----CCcHHHHHHHHHHHHhchHhHHHH
Q 029287 88 KFLIDGFP--RSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRV----DDNIDTVRKRLQVFKALNLPVINY 161 (196)
Q Consensus 88 ~~iid~~~--~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 161 (196)
.+|..+.. .....+..+. ...++|||++|++++.+|+.+|. ++. .+..+.+++ .+... ...
T Consensus 82 ~Vi~~ggg~~~~~~~r~~l~-----~~~~~v~L~a~~e~~~~Rl~~r~-~rp~~~~~~~~~~i~~---~~~~R----~~~ 148 (184)
T PRK13946 82 LVLATGGGAFMNEETRAAIA-----EKGISVWLKADLDVLWERVSRRD-TRPLLRTADPKETLAR---LMEER----YPV 148 (184)
T ss_pred eEEECCCCCcCCHHHHHHHH-----cCCEEEEEECCHHHHHHHhcCCC-CCCcCCCCChHHHHHH---HHHHH----HHH
Confidence 45554432 2333333332 24678999999999999998773 332 112233332 22222 112
Q ss_pred HHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287 162 YARRGKLYTINAVGTVDEIFEQVRAVFAALKL 193 (196)
Q Consensus 162 ~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~ 193 (196)
|.. ..+.+.....+++++.+.|...+....+
T Consensus 149 y~~-~dl~i~~~~~~~~~~~~~i~~~i~~~~~ 179 (184)
T PRK13946 149 YAE-ADLTVASRDVPKEVMADEVIEALAAYLE 179 (184)
T ss_pred HHh-CCEEEECCCCCHHHHHHHHHHHHHHhhc
Confidence 333 3444455778999999999888877654
No 70
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.64 E-value=1.1e-13 Score=98.36 Aligned_cols=113 Identities=22% Similarity=0.287 Sum_probs=70.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF 89 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~ 89 (196)
|+|+|.|++||||||+++.|++.+|+.+++.+++++............+.........+ .......+..... ....+
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~--~~~~~ 77 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENPEI-DKKIDRRIHEIAL--KEKNV 77 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCcHH-HHHHHHHHHHHHh--cCCCE
Confidence 47999999999999999999999999999998877664322111111111111111101 1112222222221 23456
Q ss_pred EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc
Q 029287 90 LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN 133 (196)
Q Consensus 90 iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~ 133 (196)
|+++..... .+...++++|+|++|++++.+|+.+|.
T Consensus 78 Vi~g~~~~~--------~~~~~~d~~v~v~a~~~~r~~R~~~R~ 113 (171)
T TIGR02173 78 VLESRLAGW--------IVREYADVKIWLKAPLEVRARRIAKRE 113 (171)
T ss_pred EEEecccce--------eecCCcCEEEEEECCHHHHHHHHHHcc
Confidence 777753211 112357899999999999999999984
No 71
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.64 E-value=4.2e-14 Score=100.75 Aligned_cols=165 Identities=19% Similarity=0.268 Sum_probs=92.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCC
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSK 87 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~ 87 (196)
.++.|+|.|++||||||+++.|++.+|+.+++.+.++....+. +....+.+ .+...........+...... ..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g~--~~~~~~~~---~g~~~~~~~~~~~~~~l~~~--~~ 75 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGK--SIPEIFEE---EGEAAFRELEEEVLAELLAR--HN 75 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCC--CHHHHHHH---HCHHHHHHHHHHHHHHHHhc--CC
Confidence 3568899999999999999999999999999998877653221 11111111 11111111222333333321 22
Q ss_pred cEEEeCC--CCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCC----CcHHHHHHHHHHHHhchHhHHHH
Q 029287 88 KFLIDGF--PRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVD----DNIDTVRKRLQVFKALNLPVINY 161 (196)
Q Consensus 88 ~~iid~~--~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 161 (196)
.+|..+- ......+..+. ...++|||++|++.+.+|+.++.. +.. ...+.+.+ .|... .+.
T Consensus 76 ~vi~~g~~~~~~~~~r~~l~-----~~~~~v~l~~~~~~~~~R~~~~~~-r~~~~~~~~~~~~~~---~~~~~-~~~--- 142 (175)
T PRK00131 76 LVISTGGGAVLREENRALLR-----ERGTVVYLDASFEELLRRLRRDRN-RPLLQTNDPKEKLRD---LYEER-DPL--- 142 (175)
T ss_pred CEEEeCCCEeecHHHHHHHH-----hCCEEEEEECCHHHHHHHhcCCCC-CCcCCCCChHHHHHH---HHHHH-HHH---
Confidence 3433331 11222232221 345779999999999999987642 221 11222222 22222 111
Q ss_pred HHhcCcEEEEe-CCCCHhHHHHHHHHHHHhhhh
Q 029287 162 YARRGKLYTIN-AVGTVDEIFEQVRAVFAALKL 193 (196)
Q Consensus 162 ~~~~~~~~~I~-~~~~~~~v~~~i~~~i~~~~~ 193 (196)
|..... +.|| ++.+++++.+.|.+.++.+++
T Consensus 143 ~~~~~d-l~idt~~~~~~e~~~~I~~~v~~~~~ 174 (175)
T PRK00131 143 YEEVAD-ITVETDGRSPEEVVNEILEKLEAAWR 174 (175)
T ss_pred HHhhcC-eEEeCCCCCHHHHHHHHHHHHHhhcc
Confidence 111123 3565 678999999999999987764
No 72
>PRK13947 shikimate kinase; Provisional
Probab=99.62 E-value=6.7e-14 Score=99.54 Aligned_cols=157 Identities=15% Similarity=0.203 Sum_probs=85.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE-GKIVPSEVTVSLIQKEMESSDSKKF 89 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~i~~~l~~~~~~~~ 89 (196)
.|+|.|++||||||+++.|++.+|+.+++.+.+++... +.+ +.+.+.. +....... ...+.+.+.. ....+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~--g~~----~~~~~~~~ge~~~~~~-e~~~~~~l~~-~~~~v 74 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMT--GMT----VAEIFEKDGEVRFRSE-EKLLVKKLAR-LKNLV 74 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhc--CCc----HHHHHHHhChHHHHHH-HHHHHHHHhh-cCCeE
Confidence 58889999999999999999999999999988776542 111 1121211 11111111 1122223321 12223
Q ss_pred EEeC--CCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCC-cHHHHHHHHHHHHhchHhHHHHHHhcC
Q 029287 90 LIDG--FPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDD-NIDTVRKRLQVFKALNLPVINYYARRG 166 (196)
Q Consensus 90 iid~--~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (196)
|..+ ++........+. ..+++|||++|++.+.+|+..|. .++.. ..+......+.|.... ..|. ..
T Consensus 75 i~~g~g~vl~~~~~~~l~-----~~~~vv~L~~~~~~l~~Rl~~r~-~rp~~~~~~~~~~i~~~~~~r~----~~y~-~a 143 (171)
T PRK13947 75 IATGGGVVLNPENVVQLR-----KNGVVICLKARPEVILRRVGKKK-SRPLLMVGDPEERIKELLKERE----PFYD-FA 143 (171)
T ss_pred EECCCCCcCCHHHHHHHH-----hCCEEEEEECCHHHHHHHhcCCC-CCCCCCCCChHHHHHHHHHHHH----HHHH-hc
Confidence 2222 223333333332 23578999999999999998763 33221 1122222122333331 2222 12
Q ss_pred cEEEEeCCCCHhHHHHHHHH
Q 029287 167 KLYTINAVGTVDEIFEQVRA 186 (196)
Q Consensus 167 ~~~~I~~~~~~~~v~~~i~~ 186 (196)
.+.+.+++.+++++.+.|.+
T Consensus 144 d~~Idt~~~~~~~i~~~I~~ 163 (171)
T PRK13947 144 DYTIDTGDMTIDEVAEEIIK 163 (171)
T ss_pred CEEEECCCCCHHHHHHHHHH
Confidence 33333467899999998877
No 73
>PRK00625 shikimate kinase; Provisional
Probab=99.62 E-value=2.3e-14 Score=101.65 Aligned_cols=114 Identities=13% Similarity=0.156 Sum_probs=67.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCCCc
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE-GKIVPSEVTVSLIQKEMESSDSKK 88 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~i~~~l~~~~~~~ 88 (196)
|.|+|+|++||||||+++.|++++|+.+++.|+++++...... ...+.+.... |...+.......+ ..+.. ...
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~--~~~i~eif~~~Ge~~fr~~E~~~l-~~l~~--~~~ 75 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGAL--YSSPKEIYQAYGEEGFCREEFLAL-TSLPV--IPS 75 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCC--CCCHHHHHHHHCHHHHHHHHHHHH-HHhcc--CCe
Confidence 3688999999999999999999999999999999876533210 0112222221 2111111112222 22222 233
Q ss_pred EEEeC--CCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc
Q 029287 89 FLIDG--FPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN 133 (196)
Q Consensus 89 ~iid~--~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~ 133 (196)
+|..+ .+.....+..+ .....+|||++|++++.+|+.+|.
T Consensus 76 VIs~GGg~~~~~e~~~~l-----~~~~~Vv~L~~~~e~l~~Rl~~R~ 117 (173)
T PRK00625 76 IVALGGGTLMIEPSYAHI-----RNRGLLVLLSLPIATIYQRLQKRG 117 (173)
T ss_pred EEECCCCccCCHHHHHHH-----hcCCEEEEEECCHHHHHHHHhcCC
Confidence 43232 22222222222 134678999999999999999884
No 74
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=99.62 E-value=1.7e-13 Score=94.00 Aligned_cols=172 Identities=16% Similarity=0.247 Sum_probs=99.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHh-CCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHH-HHHHHHHHhcC
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNY-GLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT-VSLIQKEMESS 84 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~i~~~l~~~ 84 (196)
+++++++|+|.||+||||+++.+.+.+ ....++.|+++.+.... ......++.++ +.+...+.. .....+.+...
T Consensus 2 k~~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k--~glve~rD~~R-klp~e~Q~~lq~~Aa~rI~~~ 78 (189)
T COG2019 2 KGRKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKK--KGLVEHRDEMR-KLPLENQRELQAEAAKRIAEM 78 (189)
T ss_pred CCceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHH--hCCcccHHHHh-cCCHHHHHHHHHHHHHHHHHh
Confidence 347899999999999999999999998 77789999987543111 11112333333 222222211 11111222211
Q ss_pred CCCcEEEeC---------CCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhc-cCCCCCCcHHHHHHHHHHHHhc
Q 029287 85 DSKKFLIDG---------FPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNR-NEGRVDDNIDTVRKRLQVFKAL 154 (196)
Q Consensus 85 ~~~~~iid~---------~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r-~~~~~~~~~~~~~~~~~~~~~~ 154 (196)
... +|+|. |..+...|+ .. ..+||++++|..+|+.+..|..+. ++.|..++.+.+. .+.+.
T Consensus 79 ~~~-iivDtH~~IkTP~GylpgLP~~V--l~--~l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~e~i~----eHqe~ 149 (189)
T COG2019 79 ALE-IIVDTHATIKTPAGYLPGLPSWV--LE--ELNPDVIVLLEADPEEILERRLRDSRRDRDVESVEEIR----EHQEM 149 (189)
T ss_pred hhc-eEEeccceecCCCccCCCCcHHH--HH--hcCCCEEEEEeCCHHHHHHHHhcccccccccccHHHHH----HHHHH
Confidence 111 45653 222222222 12 238999999999998888777655 3345555555544 55555
Q ss_pred hHhHHHHHHh--cCcEEEEe-CCCCHhHHHHHHHHHHHh
Q 029287 155 NLPVINYYAR--RGKLYTIN-AVGTVDEIFEQVRAVFAA 190 (196)
Q Consensus 155 ~~~~~~~~~~--~~~~~~I~-~~~~~~~v~~~i~~~i~~ 190 (196)
++-.+..|+- ...+.+|. .++.+++...+|...+..
T Consensus 150 nR~aA~a~A~~~gatVkIV~n~~~~~e~Aa~eiv~~l~~ 188 (189)
T COG2019 150 NRAAAMAYAILLGATVKIVENHEGDPEEAAEEIVELLDR 188 (189)
T ss_pred HHHHHHHHHHHhCCeEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 5655555554 33454454 457888888888776653
No 75
>PRK13948 shikimate kinase; Provisional
Probab=99.62 E-value=1e-13 Score=99.06 Aligned_cols=164 Identities=13% Similarity=0.130 Sum_probs=92.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCC
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE-GKIVPSEVTVSLIQKEMESSD 85 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~i~~~l~~~~ 85 (196)
+.+..|+|+|++||||||+++.|++.+|..+++.|..+.+.... .+.+.... |...+.......+.+.+..
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g~------si~~if~~~Ge~~fR~~E~~~l~~l~~~-- 79 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTGK------SIPEIFRHLGEAYFRRCEAEVVRRLTRL-- 79 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHhC------CHHHHHHHhCHHHHHHHHHHHHHHHHhc--
Confidence 34578899999999999999999999999999999887664322 22222221 2222222223333333332
Q ss_pred CCcEEEe--CCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCc-HHHHHHHHHHHHhchHhHHHHH
Q 029287 86 SKKFLID--GFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDN-IDTVRKRLQVFKALNLPVINYY 162 (196)
Q Consensus 86 ~~~~iid--~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 162 (196)
...+|.- +.+.....+..+. ....+|||++|++++.+|+..+ +|+.-. ....++....|... ...|
T Consensus 80 ~~~VIa~GgG~v~~~~n~~~l~-----~~g~vV~L~~~~e~l~~Rl~~~--~RPll~~~~~~~~l~~l~~~R----~~~Y 148 (182)
T PRK13948 80 DYAVISLGGGTFMHEENRRKLL-----SRGPVVVLWASPETIYERTRPG--DRPLLQVEDPLGRIRTLLNER----EPVY 148 (182)
T ss_pred CCeEEECCCcEEcCHHHHHHHH-----cCCeEEEEECCHHHHHHHhcCC--CCCCCCCCChHHHHHHHHHHH----HHHH
Confidence 2233321 2333333333333 2366799999999999999543 333211 11111111233333 2223
Q ss_pred HhcCcEEEEeC-CCCHhHHHHHHHHHHHhh
Q 029287 163 ARRGKLYTINA-VGTVDEIFEQVRAVFAAL 191 (196)
Q Consensus 163 ~~~~~~~~I~~-~~~~~~v~~~i~~~i~~~ 191 (196)
.. .. ++|++ +.+++++.++|.+.+...
T Consensus 149 ~~-a~-~~i~t~~~~~~ei~~~i~~~l~~~ 176 (182)
T PRK13948 149 RQ-AT-IHVSTDGRRSEEVVEEIVEKLWAW 176 (182)
T ss_pred Hh-CC-EEEECCCCCHHHHHHHHHHHHHHH
Confidence 22 22 35554 568999999888777553
No 76
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=99.62 E-value=3.5e-14 Score=95.56 Aligned_cols=160 Identities=15% Similarity=0.252 Sum_probs=101.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF 89 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~ 89 (196)
+.|.|+|.||+||||+++.|++.+|+.++..+++++..--.. .+-+ -..-..++++.+.+.+...+.. .+.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~-----gyDE-~y~c~i~DEdkv~D~Le~~m~~---Gg~ 78 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYE-----GYDE-EYKCHILDEDKVLDELEPLMIE---GGN 78 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchh-----cccc-cccCccccHHHHHHHHHHHHhc---CCc
Confidence 567779999999999999999999999999999987641110 0100 0112345566777777777775 344
Q ss_pred EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH--HHHHHHhchHhHHHHHHhcCc
Q 029287 90 LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK--RLQVFKALNLPVINYYARRGK 167 (196)
Q Consensus 90 iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 167 (196)
|+|-..... |. ...+|++++|.||..++..||..| +..+ ..+++ .-++|........+.|.+. .
T Consensus 79 IVDyHgCd~-----Fp---erwfdlVvVLr~~~s~LY~RL~sR--gY~e---~Ki~eNiecEIfgv~~eea~eSy~~~-i 144 (176)
T KOG3347|consen 79 IVDYHGCDF-----FP---ERWFDLVVVLRTPNSVLYDRLKSR--GYSE---KKIKENIECEIFGVVLEEARESYSPK-I 144 (176)
T ss_pred EEeecccCc-----cc---hhheeEEEEEecCchHHHHHHHHc--CCCH---HHHhhhcchHHHHHHHHHHHHHcCCc-c
Confidence 555322110 00 124799999999999999999988 3322 22222 2355666666666666654 4
Q ss_pred EEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287 168 LYTINAVGTVDEIFEQVRAVFAALKL 193 (196)
Q Consensus 168 ~~~I~~~~~~~~v~~~i~~~i~~~~~ 193 (196)
|.....+ ..+++...+...+...-.
T Consensus 145 V~eL~s~-~~Eem~~ni~ri~~w~~~ 169 (176)
T KOG3347|consen 145 VVELQSE-TKEEMESNISRILNWTRM 169 (176)
T ss_pred eeecCcC-CHHHHHHHHHHHHHHHHH
Confidence 4444444 447777776666655443
No 77
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=6.2e-14 Score=94.89 Aligned_cols=158 Identities=16% Similarity=0.265 Sum_probs=104.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHH-------HHHHHHHHh
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT-------VSLIQKEME 82 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~i~~~l~ 82 (196)
-+|++.|++||||||++++|++.+|+.+++.|++... ..++-+..|.+++++.. .......+.
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~----------~NveKM~~GipLnD~DR~pWL~~i~~~~~~~l~ 82 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPP----------ANVEKMTQGIPLNDDDRWPWLKKIAVELRKALA 82 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCH----------HHHHHHhcCCCCCcccccHHHHHHHHHHHHHhh
Confidence 4788899999999999999999999999999887532 24455666666654322 222333333
Q ss_pred cCCCCcEEEeCCCCCHHHHHHHHHHhC-----CCC---cEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhc
Q 029287 83 SSDSKKFLIDGFPRSEENRAAFERIMG-----AEP---DIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKAL 154 (196)
Q Consensus 83 ~~~~~~~iid~~~~~~~~~~~~~~~~~-----~~p---~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~ 154 (196)
+.+++|+-+....-..+..+..++. ..| -.+++|..+.+++.+|+.+|.. +....+.++.++...+..
T Consensus 83 --~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~g--HFMp~~lleSQf~~LE~p 158 (191)
T KOG3354|consen 83 --SGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKG--HFMPADLLESQFATLEAP 158 (191)
T ss_pred --cCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhccc--ccCCHHHHHHHHHhccCC
Confidence 5677777766555444554444321 112 2358899999999999999943 333667777766555444
Q ss_pred hHhHHHHHHhcCcEEEEeCC-CCHhHHHHHHHHHH
Q 029287 155 NLPVINYYARRGKLYTINAV-GTVDEIFEQVRAVF 188 (196)
Q Consensus 155 ~~~~~~~~~~~~~~~~I~~~-~~~~~v~~~i~~~i 188 (196)
. ++..+++.|+.. .+++++.+.|.+-+
T Consensus 159 ~-------~~e~div~isv~~~~~e~iv~tI~k~~ 186 (191)
T KOG3354|consen 159 D-------ADEEDIVTISVKTYSVEEIVDTIVKMV 186 (191)
T ss_pred C-------CCccceEEEeeccCCHHHHHHHHHHHH
Confidence 2 233356777755 88888887766544
No 78
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.60 E-value=1e-13 Score=98.56 Aligned_cols=162 Identities=15% Similarity=0.236 Sum_probs=86.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhh-cCCCCCHHHHHHHHHHHHhcCCCC
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIK-EGKIVPSEVTVSLIQKEMESSDSK 87 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~i~~~l~~~~~~ 87 (196)
+..|+|.|++||||||+++.|++.+|+.+++.|..+.+.... . +..... .|...+.......+.. +.. ..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g~--~----i~~~~~~~g~~~fr~~e~~~l~~-l~~--~~ 74 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGA--D----IGWVFDVEGEEGFRDREEKVINE-LTE--KQ 74 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhCc--C----HhHHHHHhCHHHHHHHHHHHHHH-HHh--CC
Confidence 357889999999999999999999999999998765543221 1 111111 1111111111222223 222 12
Q ss_pred cEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHh
Q 029287 88 KFLIDG---FPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYAR 164 (196)
Q Consensus 88 ~~iid~---~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (196)
.+++.. .+.....+..+. ..+.+|||++|++++.+|+..+. .|+........+.+..+.....+++..+++
T Consensus 75 ~~vi~~ggg~v~~~~~~~~l~-----~~~~vv~L~~~~e~~~~Ri~~~~-~rP~~~~~~~~~~~~~l~~~R~~~Y~~~Ad 148 (172)
T PRK05057 75 GIVLATGGGSVKSRETRNRLS-----ARGVVVYLETTIEKQLARTQRDK-KRPLLQVDDPREVLEALANERNPLYEEIAD 148 (172)
T ss_pred CEEEEcCCchhCCHHHHHHHH-----hCCEEEEEeCCHHHHHHHHhCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHhhCC
Confidence 233332 122223333333 34688999999999999997653 333221000011121222222333333333
Q ss_pred cCcEEEEeC-CCCHhHHHHHHHHHHH
Q 029287 165 RGKLYTINA-VGTVDEIFEQVRAVFA 189 (196)
Q Consensus 165 ~~~~~~I~~-~~~~~~v~~~i~~~i~ 189 (196)
++||+ ..+++++.+.|.+.++
T Consensus 149 ----~~idt~~~s~~ei~~~i~~~l~ 170 (172)
T PRK05057 149 ----VTIRTDDQSAKVVANQIIHMLE 170 (172)
T ss_pred ----EEEECCCCCHHHHHHHHHHHHh
Confidence 45664 4689999888776653
No 79
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.60 E-value=1.3e-13 Score=99.34 Aligned_cols=165 Identities=16% Similarity=0.166 Sum_probs=92.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHH-----hcCChhhHHHHHHhhcCCCCCHHHH-------HHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREI-----ASNSEYGTTILNTIKEGKIVPSEVT-------VSLI 77 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~i 77 (196)
.+++|.||+||||||++++|+..++..+...+..+.+.. ....-....+...+..+........ ...+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~~~ 82 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGIEI 82 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcHHH
Confidence 478889999999999999999876654444333222110 0111112222222222221111000 0124
Q ss_pred HHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHh
Q 029287 78 QKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLP 157 (196)
Q Consensus 78 ~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (196)
...+.. +..+|+++- ......+.+.+ ..+..+|||++|++++.+|+.+| ++. +.+.+++|+..+.
T Consensus 83 ~~~l~~--g~~VI~~G~---~~~~~~~~~~~-~~~~~vi~l~~s~e~l~~RL~~R--~~~--~~~~i~~rl~r~~----- 147 (186)
T PRK10078 83 DLWLHA--GFDVLVNGS---RAHLPQARARY-QSALLPVCLQVSPEILRQRLENR--GRE--NASEINARLARAA----- 147 (186)
T ss_pred HHHHhC--CCEEEEeCh---HHHHHHHHHHc-CCCEEEEEEeCCHHHHHHHHHHh--CCC--CHHHHHHHHHHhh-----
Confidence 444443 345666544 12222233333 34566799999999999999987 322 4455666653221
Q ss_pred HHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287 158 VINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKL 193 (196)
Q Consensus 158 ~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~ 193 (196)
.+ .....++|+++++++++.++|...+..-.+
T Consensus 148 ---~~-~~ad~~vi~~~~s~ee~~~~i~~~l~~~~~ 179 (186)
T PRK10078 148 ---RY-QPQDCHTLNNDGSLRQSVDTLLTLLHLSQK 179 (186)
T ss_pred ---hh-ccCCEEEEeCCCCHHHHHHHHHHHHhhcCc
Confidence 11 134567788888999999999887755433
No 80
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.59 E-value=2.1e-15 Score=116.16 Aligned_cols=167 Identities=23% Similarity=0.327 Sum_probs=109.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH------------HHHhcCChhhH-----HHHHHhhcCCCC---CH
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR------------REIASNSEYGT-----TILNTIKEGKIV---PS 70 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~------------~~~~~~~~~~~-----~~~~~l~~~~~~---~~ 70 (196)
+++|.|||||||||++++++ |+..++.|++.- +.+....+... +..+++..+... +.
T Consensus 31 f~vllGPSGcGKSTlLr~IA---GLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k 107 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIA---GLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPK 107 (338)
T ss_pred EEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCch
Confidence 67779999999999999999 999998887741 11222222211 245555554332 23
Q ss_pred HHHHHHHHHHHhcCCCCcEEEeCCC----CCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH
Q 029287 71 EVTVSLIQKEMESSDSKKFLIDGFP----RSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK 146 (196)
Q Consensus 71 ~~~~~~i~~~l~~~~~~~~iid~~~----~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~ 146 (196)
......+.+....-.-.. .++++| .++.|++++++++-..|.+ ++||+|...+..+++.. .......+++
T Consensus 108 ~ei~~rV~eva~~L~l~~-lL~r~P~~LSGGQrQRVAlaRAlVr~P~v-~L~DEPlSnLDa~lR~~----mr~ei~~lh~ 181 (338)
T COG3839 108 AEIDKRVKEVAKLLGLEH-LLNRKPLQLSGGQRQRVALARALVRKPKV-FLLDEPLSNLDAKLRVL----MRSEIKKLHE 181 (338)
T ss_pred HHHHHHHHHHHHHcCChh-HHhcCcccCChhhHHHHHHHHHHhcCCCE-EEecCchhHhhHHHHHH----HHHHHHHHHH
Confidence 334444444444322333 255544 5699999999999999997 88999999888888755 1112333444
Q ss_pred HH---HHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHHHHH
Q 029287 147 RL---QVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQVRA 186 (196)
Q Consensus 147 ~~---~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~i~~ 186 (196)
++ ..|-+|+...+...+++..++. |...+++.++++.-.+
T Consensus 182 ~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n 227 (338)
T COG3839 182 RLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPAN 227 (338)
T ss_pred hcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccc
Confidence 43 3688999988888888655554 4456788888876443
No 81
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.59 E-value=7.9e-16 Score=119.09 Aligned_cols=168 Identities=23% Similarity=0.345 Sum_probs=111.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH------------HHHHhcCChhhH-----HHHHHhhcCCC----C
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL------------RREIASNSEYGT-----TILNTIKEGKI----V 68 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~------------~~~~~~~~~~~~-----~~~~~l~~~~~----~ 68 (196)
-+++|.|||||||||++++|+ |+..++.|.+. ++.+....+.+. .+.+++..|.. .
T Consensus 32 ef~~lLGPSGcGKTTlLR~IA---Gfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~ 108 (352)
T COG3842 32 EFVTLLGPSGCGKTTLLRMIA---GFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKL 108 (352)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCC
Confidence 367789999999999999999 99998888663 222222222211 24555555443 2
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEeCCC----CCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHH
Q 029287 69 PSEVTVSLIQKEMESSDSKKFLIDGFP----RSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTV 144 (196)
Q Consensus 69 ~~~~~~~~i~~~l~~~~~~~~iid~~~----~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~ 144 (196)
........+.+++.......+ .+++| .++.|++++++++...|.+ ++||+|...+...++.. .......+
T Consensus 109 ~~~~i~~rv~e~L~lV~L~~~-~~R~p~qLSGGQqQRVALARAL~~~P~v-LLLDEPlSaLD~kLR~~----mr~Elk~l 182 (352)
T COG3842 109 KKAEIKARVEEALELVGLEGF-ADRKPHQLSGGQQQRVALARALVPEPKV-LLLDEPLSALDAKLREQ----MRKELKEL 182 (352)
T ss_pred CHHHHHHHHHHHHHHcCchhh-hhhChhhhChHHHHHHHHHHHhhcCcch-hhhcCcccchhHHHHHH----HHHHHHHH
Confidence 334455666666665444433 45544 5699999999999999999 88999998777777655 11122222
Q ss_pred HHHH---HHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHHHHH
Q 029287 145 RKRL---QVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQVRA 186 (196)
Q Consensus 145 ~~~~---~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~i~~ 186 (196)
.++. -.|.+|+...+..++++..++. |..-+++++++..-.+
T Consensus 183 q~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~ 230 (352)
T COG3842 183 QRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPAT 230 (352)
T ss_pred HHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcch
Confidence 2222 3577888888888887655543 5566889999877543
No 82
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.59 E-value=5.4e-14 Score=103.23 Aligned_cols=38 Identities=32% Similarity=0.531 Sum_probs=30.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhC---CceechhHHH
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYG---LTHLSAGELL 44 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~---~~~i~~~~~~ 44 (196)
.++++|+|.|++||||||+++.|++.++ +..++.|+.+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~ 44 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYY 44 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccc
Confidence 4679999999999999999999999983 3445665554
No 83
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.58 E-value=1.3e-14 Score=104.82 Aligned_cols=148 Identities=16% Similarity=0.249 Sum_probs=87.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhCCc---eechhHHHHHHHhc----------CC------hhhHHHHHHhhcCCC
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLT---HLSAGELLRREIAS----------NS------EYGTTILNTIKEGKI 67 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~---~i~~~~~~~~~~~~----------~~------~~~~~~~~~l~~~~~ 67 (196)
.+..+|+|.|+|||||||+++.|.+.++.. .++.|+++...-.. +. +...+-...+..|..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence 456899999999999999999999999844 56666665321110 00 111122233344433
Q ss_pred CC----HHHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccC-CCCCCcHH
Q 029287 68 VP----SEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNE-GRVDDNID 142 (196)
Q Consensus 68 ~~----~~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~-~~~~~~~~ 142 (196)
+. +...+....+.....+...+|++|+..-.. +.+....|+.||+|+|.+.+..|...|.- .|. .
T Consensus 86 v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d------~~lr~~~d~kIfvdtd~D~RliRri~RD~~~rg----~ 155 (218)
T COG0572 86 VDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD------ERLRDLMDLKIFVDTDADVRLIRRIKRDVQERG----R 155 (218)
T ss_pred ccccccchhcccccCCccccCCCcEEEEeccccccc------HHHHhhcCEEEEEeCCccHHHHHHHHHHHHHhC----C
Confidence 22 222222222233334567788999753322 22333579999999999999999988841 121 1
Q ss_pred HHHHHHHHHHhchHhHHHHHHh
Q 029287 143 TVRKRLQVFKALNLPVINYYAR 164 (196)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~ 164 (196)
.++..++.|.....+..+.|-+
T Consensus 156 ~~e~vi~qy~~~vkp~~~~fIe 177 (218)
T COG0572 156 DLESVIEQYVKTVRPMYEQFIE 177 (218)
T ss_pred CHHHHHHHHHHhhChhhhhccC
Confidence 2333344666666666666655
No 84
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.57 E-value=9.9e-14 Score=98.93 Aligned_cols=159 Identities=16% Similarity=0.195 Sum_probs=96.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCC------C-HHHHHHHHHHHHh
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIV------P-SEVTVSLIQKEME 82 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~-~~~~~~~i~~~l~ 82 (196)
.+++|.|++||||||+++.|+..++..+++.+++.... ..+.. ..+... + ...........+.
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~---------~~r~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~ 73 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAK---------NIDKM-SQGIPLTDEDRLPWLERLNDASYSLYK 73 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHh---------HHHHH-hcCCCCCcccchHHHHHHHHHHHHHHh
Confidence 36888999999999999999999888888876542210 01110 011111 1 1122222222222
Q ss_pred cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHH
Q 029287 83 SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYY 162 (196)
Q Consensus 83 ~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (196)
.. ..++|+-.+ .....+..+ +... .|-.+|+|++|++++.+|+.+|.. ...+.+.+..+...++....
T Consensus 74 ~~-~~g~iv~s~-~~~~~R~~~-r~~~-~~~~~v~l~a~~~~l~~Rl~~R~~--~~~~~~vl~~Q~~~~e~~~~------ 141 (176)
T PRK09825 74 KN-ETGFIVCSS-LKKQYRDIL-RKSS-PNVHFLWLDGDYETILARMQRRAG--HFMPPDLLQSQFDALERPCA------ 141 (176)
T ss_pred cC-CCEEEEEEe-cCHHHHHHH-HhhC-CCEEEEEEeCCHHHHHHHHhcccC--CCCCHHHHHHHHHHcCCCCC------
Confidence 22 345555222 233333333 3233 455679999999999999999953 23477777777776665422
Q ss_pred HhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287 163 ARRGKLYTINAVGTVDEIFEQVRAVFAAL 191 (196)
Q Consensus 163 ~~~~~~~~I~~~~~~~~v~~~i~~~i~~~ 191 (196)
....++.||++++++.+..++...+..+
T Consensus 142 -~e~~~~~~d~~~~~~~~~~~~~~~~~~~ 169 (176)
T PRK09825 142 -DEHDIARIDVNHDIENVTEQCRQAVQAF 169 (176)
T ss_pred -CcCCeEEEECCCCHHHHHHHHHHHHHHH
Confidence 2235889999999888877766666543
No 85
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.57 E-value=7.2e-13 Score=94.93 Aligned_cols=173 Identities=14% Similarity=0.258 Sum_probs=93.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhc----CC--hhhHHHHHHh--------------hcCCCC
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIAS----NS--EYGTTILNTI--------------KEGKIV 68 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~----~~--~~~~~~~~~l--------------~~~~~~ 68 (196)
.++|+|.||+||||||+++.|+++||+.+++.|-++|..-.. .. .....+.+.. .+|..+
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~gedv 83 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLNGEDV 83 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceecccceEEECCchh
Confidence 489999999999999999999999999999999988753211 11 1111111111 111122
Q ss_pred CHHHH-------------HHHHHHHHh-----cCCC-CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHH
Q 029287 69 PSEVT-------------VSLIQKEME-----SSDS-KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRV 129 (196)
Q Consensus 69 ~~~~~-------------~~~i~~~l~-----~~~~-~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl 129 (196)
.+... .+.+.+.+. .... .++|+||=- +..-..+..++-|||+++++++.+|.
T Consensus 84 s~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRD--------iGTvV~PdA~lKiFLtAS~e~RA~RR 155 (222)
T COG0283 84 SEEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRD--------IGTVVFPDAELKIFLTASPEERAERR 155 (222)
T ss_pred hhhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecCC--------CcceECCCCCeEEEEeCCHHHHHHHH
Confidence 11100 111111111 1112 446677521 11123457788999999999998888
Q ss_pred hhccCCCC-CCcHHHHHHHHH--HHHhchHhHHHHHHhcCcEEEEe-CCCCHhHHHHHHHHHHHh
Q 029287 130 LNRNEGRV-DDNIDTVRKRLQ--VFKALNLPVINYYARRGKLYTIN-AVGTVDEIFEQVRAVFAA 190 (196)
Q Consensus 130 ~~r~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~I~-~~~~~~~v~~~i~~~i~~ 190 (196)
-+...... ....+.+.+.+. -+....+...- +......+.|| .+.++++|.++|...+.+
T Consensus 156 ~~q~~~~g~~~~~e~ll~eI~~RD~~D~~R~~~P-Lk~A~DA~~iDTs~msieeVv~~il~~~~~ 219 (222)
T COG0283 156 YKQLQAKGFSEVFEELLAEIKERDERDSNRAVAP-LKPAEDALLLDTSSLSIEEVVEKILELIRQ 219 (222)
T ss_pred HHHHHhccCcchHHHHHHHHHHhhhccccCcCCC-CcCCCCeEEEECCCCcHHHHHHHHHHHHHH
Confidence 76632222 111222222211 11111111000 01123445666 578999999999887763
No 86
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.56 E-value=4.3e-13 Score=94.58 Aligned_cols=154 Identities=10% Similarity=0.136 Sum_probs=90.4
Q ss_pred EcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCH-------HHHHHHHHHHHhcCCCC
Q 029287 15 LGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPS-------EVTVSLIQKEMESSDSK 87 (196)
Q Consensus 15 ~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~i~~~l~~~~~~ 87 (196)
+|+|||||||+++.|++.+|..+++.+.+..+.. ++. ...|....+ ............. ...
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~---------~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 69 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRN---------IEK-MASGEPLNDDDRKPWLQALNDAAFAMQRT-NKV 69 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhh---------hcc-ccCCCCCChhhHHHHHHHHHHHHHHHHHc-CCc
Confidence 5999999999999999999998888865421110 000 000111100 1111222222221 233
Q ss_pred cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCc
Q 029287 88 KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGK 167 (196)
Q Consensus 88 ~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (196)
.+|+ ........+..+.. ...|-.+|+|++|++++.+|+.+|..+ ..+.+.+..+...++.... .+ ..
T Consensus 70 ~viv-~s~~~~~~r~~~~~--~~~~~~~v~l~a~~~~l~~Rl~~R~~~--~a~~~vl~~Q~~~~ep~~~------~e-~~ 137 (163)
T PRK11545 70 SLIV-CSALKKHYRDLLRE--GNPNLSFIYLKGDFDVIESRLKARKGH--FFKTQMLVTQFETLQEPGA------DE-TD 137 (163)
T ss_pred eEEE-EecchHHHHHHHHc--cCCCEEEEEEECCHHHHHHHHHhccCC--CCCHHHHHHHHHHcCCCCC------CC-CC
Confidence 3344 32222333333332 234556699999999999999999532 2477777777666654422 11 25
Q ss_pred EEEEeCCCCHhHHHHHHHHHHHhh
Q 029287 168 LYTINAVGTVDEIFEQVRAVFAAL 191 (196)
Q Consensus 168 ~~~I~~~~~~~~v~~~i~~~i~~~ 191 (196)
++.||+..+++++...+...+.+.
T Consensus 138 ~~~id~~~~~~~~~~~~~~~~~~~ 161 (163)
T PRK11545 138 VLVVDIDQPLEGVVASTIEVIKKG 161 (163)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHh
Confidence 688999999998888877776543
No 87
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.55 E-value=1.2e-13 Score=100.99 Aligned_cols=167 Identities=16% Similarity=0.231 Sum_probs=92.9
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHHHh-CCceechhHHHHHHHhcCCh--------hhHHHHHHhhcCCCCCHH-----
Q 029287 6 GKGPFICFVLGGPGSGKGTQCAKIVKNY-GLTHLSAGELLRREIASNSE--------YGTTILNTIKEGKIVPSE----- 71 (196)
Q Consensus 6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~-~~~~i~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~----- 71 (196)
+..+.+|+|+|||||||||+++.|.+.. .+..... .. .+....+.. ....+...+..+..+...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~-~t-tr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~ 87 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVT-AT-TRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGN 87 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhcCCccccccc-cc-CCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCc
Confidence 4567899999999999999999998652 1111110 00 000001100 112233444444333211
Q ss_pred ---HHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh--HHHHHHHhhccCCCCCCcHHHHHH
Q 029287 72 ---VTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE--EEMVNRVLNRNEGRVDDNIDTVRK 146 (196)
Q Consensus 72 ---~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~--~~~~~Rl~~r~~~~~~~~~~~~~~ 146 (196)
.....+...+.. +..+|++.-. .....+. ...|+.++++++|+ +++.+|+.+|. .++.+.+.+
T Consensus 88 ~YGt~~~~i~~~~~~--g~~vi~~~~~---~g~~~l~---~~~pd~~~if~~pps~e~l~~Rl~~R~----~~~~~~~~~ 155 (206)
T PRK14738 88 YYGVPKAPVRQALAS--GRDVIVKVDV---QGAASIK---RLVPEAVFIFLAPPSMDELTRRLELRR----TESPEELER 155 (206)
T ss_pred eecCCHHHHHHHHHc--CCcEEEEcCH---HHHHHHH---HhCCCeEEEEEeCCCHHHHHHHHHHcC----CCCHHHHHH
Confidence 112344455543 4556676432 1112222 23588888888865 57899999872 335566666
Q ss_pred HHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287 147 RLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAAL 191 (196)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~ 191 (196)
|+..+..... ......+++||++.+++++.+++.+.+...
T Consensus 156 Rl~~~~~e~~-----~~~~~~~~iId~~~~~e~v~~~i~~~l~~~ 195 (206)
T PRK14738 156 RLATAPLELE-----QLPEFDYVVVNPEDRLDEAVAQIMAIISAE 195 (206)
T ss_pred HHHHHHHHHh-----cccCCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 6654322111 012346778999999999999998888553
No 88
>PLN02199 shikimate kinase
Probab=99.55 E-value=8.6e-13 Score=99.69 Aligned_cols=166 Identities=16% Similarity=0.175 Sum_probs=95.7
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhh-cCCCCCHHHHHHHHHHHHhcCCCC
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIK-EGKIVPSEVTVSLIQKEMESSDSK 87 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~i~~~l~~~~~~ 87 (196)
...|+|+|++||||||+++.|++.+|+.+++.|.++.+... +..+.+.+. .|...+.....+.+.+.... ..
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~-----G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~--~~ 174 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN-----GTSVAEIFVHHGENFFRGKETDALKKLSSR--YQ 174 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc-----CCCHHHHHHHhCHHHHHHHHHHHHHHHHhc--CC
Confidence 35788899999999999999999999999999998877532 112333332 23323333334444443332 23
Q ss_pred cEEEe--CCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhc-cCCCCCC---cHHH----HHHHHHHHHhchHh
Q 029287 88 KFLID--GFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNR-NEGRVDD---NIDT----VRKRLQVFKALNLP 157 (196)
Q Consensus 88 ~~iid--~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r-~~~~~~~---~~~~----~~~~~~~~~~~~~~ 157 (196)
.+|.- |.+.....+..+ . -.++|||++|++.+.+|+... ...|+-- +.+. .+.....|.+.
T Consensus 175 ~VIStGGG~V~~~~n~~~L----~--~G~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~~~~L~~L~~~R--- 245 (303)
T PLN02199 175 VVVSTGGGAVIRPINWKYM----H--KGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDER--- 245 (303)
T ss_pred EEEECCCcccCCHHHHHHH----h--CCeEEEEECCHHHHHHHHhhcCCCCCCcCCCCCcchhhhHHHHHHHHHHHH---
Confidence 33321 122223333322 1 267899999999999999852 1123211 1111 11122334333
Q ss_pred HHHHHHhcCcEEEEe-------------CCCCHhHHHHHHHHHHHhhhh
Q 029287 158 VINYYARRGKLYTIN-------------AVGTVDEIFEQVRAVFAALKL 193 (196)
Q Consensus 158 ~~~~~~~~~~~~~I~-------------~~~~~~~v~~~i~~~i~~~~~ 193 (196)
...|.. +.+ .|+ .+.+++++..+|.+.+.++++
T Consensus 246 -~plY~~-Ad~-~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l~ 291 (303)
T PLN02199 246 -GEAYTN-ANA-RVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLE 291 (303)
T ss_pred -HHHHHh-CCE-EEecccccccccccccCCCCHHHHHHHHHHHHHHHHh
Confidence 223333 223 333 457899999998888887765
No 89
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.54 E-value=3.6e-13 Score=93.76 Aligned_cols=131 Identities=15% Similarity=0.189 Sum_probs=77.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCC----H---HHHHHHHHHHHhc
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVP----S---EVTVSLIQKEMES 83 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~---~~~~~~i~~~l~~ 83 (196)
+++|.|++||||||+++.|++.++..+++.|.+..... ...+..+.... . ..........+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~- 69 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPAN----------IAKMAAGIPLNDEDRWPWLQALTDALLAKLA- 69 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHH----------HHHHHcCCCCCccchhhHHHHHHHHHHHHHH-
Confidence 46789999999999999999999999999877654311 00011111111 0 111112222221
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhc
Q 029287 84 SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKAL 154 (196)
Q Consensus 84 ~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~ 154 (196)
..+..+|++.-......+..+.......+-.++++++|++++.+|+.+|... ....+.+..+...|+..
T Consensus 70 ~~~~~vVid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~--~~~~~~~~~~~~~~~~p 138 (150)
T cd02021 70 SAGEGVVVACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAARKGH--FMPADLLDSQFETLEPP 138 (150)
T ss_pred hCCCCEEEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhcccC--CCCHHHHHHHHHHhcCC
Confidence 1345577775544544554444432223455799999999999999998322 22355666655555544
No 90
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=99.54 E-value=7.8e-13 Score=94.53 Aligned_cols=30 Identities=20% Similarity=0.418 Sum_probs=27.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCcee
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHL 38 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i 38 (196)
.++|+|.|+.|+||||++++|++++|..++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~ 33 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVF 33 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCcee
Confidence 579999999999999999999999996554
No 91
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.54 E-value=7.9e-14 Score=96.20 Aligned_cols=115 Identities=25% Similarity=0.418 Sum_probs=73.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhh---HHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCC
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYG---TTILNTIKEGKIVPSEVTVSLIQKEMESSDSK 87 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~ 87 (196)
+|++.|+|||||||+++.|++.++..+++.|.+.........+.. ....+.. ...+...+...+. .+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~--~g~ 71 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEERA-------YQILNAAIRKALR--NGN 71 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHHH-------HHHHHHHHHHHHH--TT-
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHHH-------HHHHHHHHHHHHH--cCC
Confidence 578899999999999999999999999999877654432221110 0010000 0122233444444 345
Q ss_pred cEEEeCCCCCHHHHHHHHHHhC--CCCcEEEEeecChHHHHHHHhhccC
Q 029287 88 KFLIDGFPRSEENRAAFERIMG--AEPDIVLFFDCPEEEMVNRVLNRNE 134 (196)
Q Consensus 88 ~~iid~~~~~~~~~~~~~~~~~--~~p~~~i~ld~~~~~~~~Rl~~r~~ 134 (196)
.+|+|........+..+..+.. ..+..+|+|++|.+++.+|+.+|..
T Consensus 72 ~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~ 120 (143)
T PF13671_consen 72 SVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNR 120 (143)
T ss_dssp EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHC
T ss_pred CceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCC
Confidence 5788877666666655555431 2355669999999999999999953
No 92
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.54 E-value=3.6e-13 Score=109.54 Aligned_cols=40 Identities=30% Similarity=0.405 Sum_probs=36.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE 47 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~ 47 (196)
.+++|+|.||+||||||+++.|++++|+.+++.|.++|..
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~ 322 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV 322 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence 4589999999999999999999999999999999988763
No 93
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.54 E-value=8.3e-13 Score=102.27 Aligned_cols=164 Identities=13% Similarity=0.206 Sum_probs=93.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhh-cCCCCCHHHHHHHHHHHHhcCCC
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIK-EGKIVPSEVTVSLIQKEMESSDS 86 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~i~~~l~~~~~ 86 (196)
....|+|+|++||||||+++.|++.+|+.+++.+..+.+.... . +.+... .|...........+.+.+.. .
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G~--~----i~ei~~~~G~~~fr~~e~~~l~~ll~~--~ 203 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAGL--S----VSEIFALYGQEGYRRLERRALERLIAE--H 203 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhCC--C----HHHHHHHHCHHHHHHHHHHHHHHHHhh--C
Confidence 4468999999999999999999999999999998776554221 1 112111 12111112223334443332 2
Q ss_pred CcEEEeCCCC---CHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCC----CCcHHHHHHHHHHHHhchHhHH
Q 029287 87 KKFLIDGFPR---SEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRV----DDNIDTVRKRLQVFKALNLPVI 159 (196)
Q Consensus 87 ~~~iid~~~~---~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 159 (196)
...|+.+-.. ....+..+ . ...++|||++|++++.+|+.+|...|. ....+.+++ .+..+ .+
T Consensus 204 ~~~VI~~Ggg~v~~~~~~~~l---~--~~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~---~~~~R-~~-- 272 (309)
T PRK08154 204 EEMVLATGGGIVSEPATFDLL---L--SHCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRR---ILASR-EP-- 272 (309)
T ss_pred CCEEEECCCchhCCHHHHHHH---H--hCCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHH---HHHHH-HH--
Confidence 2234443211 11222221 1 246789999999999999998743332 112333333 22222 11
Q ss_pred HHHHhcCcEEEEeCC-CCHhHHHHHHHHHHHhhhh
Q 029287 160 NYYARRGKLYTINAV-GTVDEIFEQVRAVFAALKL 193 (196)
Q Consensus 160 ~~~~~~~~~~~I~~~-~~~~~v~~~i~~~i~~~~~ 193 (196)
+|. ... ++|+++ .+++++.+.|.+.+..++.
T Consensus 273 -~y~-~ad-~~I~t~~~s~ee~~~~I~~~l~~~~~ 304 (309)
T PRK08154 273 -LYA-RAD-AVVDTSGLTVAQSLARLRELVRPALG 304 (309)
T ss_pred -HHH-hCC-EEEECCCCCHHHHHHHHHHHHHHHhc
Confidence 121 123 356655 4899999999988877653
No 94
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.52 E-value=3.9e-12 Score=90.80 Aligned_cols=158 Identities=14% Similarity=0.119 Sum_probs=84.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCc--eechhHHHHHHHhcCChhhHHHHHHhhc-C--CCCCH-------HHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLT--HLSAGELLRREIASNSEYGTTILNTIKE-G--KIVPS-------EVTVSLI 77 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~--~~~~~-------~~~~~~i 77 (196)
.+|+|.|+|||||||+++.|++.++.. +++.|++.......... . .+.+.. + ...+. ......+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 78 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQD-A---EGGIEFDGDGGVSPGPEFRLLEGAWYEAV 78 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcc-c---ccccccCccCCcccchHHHHHHHHHHHHH
Confidence 478899999999999999999998643 44666554332111000 0 000000 0 00011 1112223
Q ss_pred HHHHhcCCCCcEEEeCCCC-CHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchH
Q 029287 78 QKEMESSDSKKFLIDGFPR-SEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNL 156 (196)
Q Consensus 78 ~~~l~~~~~~~~iid~~~~-~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~ 156 (196)
...+. .+..+|+|.... ....+..+.. +...+-..|+++||.+++.+|+.+|. .. .......+...+
T Consensus 79 ~~~l~--~G~~VIvD~~~~~~~~~r~~~~~-~~~~~~~~v~l~~~~~~l~~R~~~R~--~~--~~~~~~~~~~~~----- 146 (175)
T cd00227 79 AAMAR--AGANVIADDVFLGRAALQDCWRS-FVGLDVLWVGVRCPGEVAEGRETARG--DR--VPGQARKQARVV----- 146 (175)
T ss_pred HHHHh--CCCcEEEeeeccCCHHHHHHHHH-hcCCCEEEEEEECCHHHHHHHHHhcC--Cc--cchHHHHHHHHh-----
Confidence 33333 356678886433 3333333332 33345567999999999999999883 11 111111111111
Q ss_pred hHHHHHHhcCcEEEEeCC-CCHhHHHHHHHHHH
Q 029287 157 PVINYYARRGKLYTINAV-GTVDEIFEQVRAVF 188 (196)
Q Consensus 157 ~~~~~~~~~~~~~~I~~~-~~~~~v~~~i~~~i 188 (196)
.......+.||++ .++++..++|...+
T Consensus 147 -----~~~~~~dl~iDts~~s~~e~a~~i~~~l 174 (175)
T cd00227 147 -----HAGVEYDLEVDTTHKTPIECARAIAARV 174 (175)
T ss_pred -----cCCCcceEEEECCCCCHHHHHHHHHHhc
Confidence 1112245678876 47888887776543
No 95
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.51 E-value=1.1e-12 Score=108.46 Aligned_cols=168 Identities=20% Similarity=0.251 Sum_probs=97.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhh-cCCCCCHHHHHHHHHHHHhcCCC
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIK-EGKIVPSEVTVSLIQKEMESSDS 86 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~i~~~l~~~~~ 86 (196)
+...|+|+|++||||||+++.|++.+|+.++|.|+.+.+.. +..+.+.+. .|...+...-.+.+.+.+.. .
T Consensus 5 ~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~------g~si~eif~~~Ge~~FR~~E~~~l~~~~~~--~ 76 (542)
T PRK14021 5 RRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREI------GMSIPSYFEEYGEPAFREVEADVVADMLED--F 76 (542)
T ss_pred CCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHH------CcCHHHHHHHHHHHHHHHHHHHHHHHHHhc--C
Confidence 44678889999999999999999999999999999887643 233444442 23333333334444444332 2
Q ss_pred CcEE-Ee-CCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHh
Q 029287 87 KKFL-ID-GFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYAR 164 (196)
Q Consensus 87 ~~~i-id-~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (196)
..+| +. |.+.....+..+...+. ....+|||++|++++.+|+..+ ..|+--.....++-.+.|... .+....++
T Consensus 77 ~~VIs~GGG~v~~~~n~~~L~~~~~-~~g~vv~L~~~~~~l~~Rl~~~-~~RPll~~~~~~~~~~l~~~R-~~~Y~~~A- 152 (542)
T PRK14021 77 DGIFSLGGGAPMTPSTQHALASYIA-HGGRVVYLDADPKEAMERANRG-GGRPMLNGDANKRWKKLFKQR-DPVFRQVA- 152 (542)
T ss_pred CeEEECCCchhCCHHHHHHHHHHHh-cCCEEEEEECCHHHHHHHHhCC-CCCCCCCCCcHHHHHHHHHHH-HHHHHhhC-
Confidence 2333 22 23444444544433222 3357899999999999999754 234322111111111233333 22222222
Q ss_pred cCcEEEEeC-CCCHhHHHHHHHHHHHh
Q 029287 165 RGKLYTINA-VGTVDEIFEQVRAVFAA 190 (196)
Q Consensus 165 ~~~~~~I~~-~~~~~~v~~~i~~~i~~ 190 (196)
. +.|++ ..+++++.++|.+.+..
T Consensus 153 --d-~~i~~~~~~~~~~~~~i~~~~~~ 176 (542)
T PRK14021 153 --N-VHVHTRGLTPQAAAKKLIDMVAE 176 (542)
T ss_pred --C-EEEECCCCCHHHHHHHHHHHHHh
Confidence 2 34554 56899999888777654
No 96
>PRK07261 topology modulation protein; Provisional
Probab=99.51 E-value=1.3e-13 Score=97.99 Aligned_cols=100 Identities=19% Similarity=0.236 Sum_probs=69.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF 89 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~ 89 (196)
+.|+|+|+|||||||+++.|++.+++.+++.|.+..... ....+.......+...+.. ..|
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~----------------~~~~~~~~~~~~~~~~~~~---~~w 61 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN----------------WQERDDDDMIADISNFLLK---HDW 61 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc----------------cccCCHHHHHHHHHHHHhC---CCE
Confidence 468899999999999999999999999988876643210 0111223344445555542 349
Q ss_pred EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc
Q 029287 90 LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN 133 (196)
Q Consensus 90 iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~ 133 (196)
|+||..........+. ..|.+|+||+|...+..|+.+|.
T Consensus 62 Iidg~~~~~~~~~~l~-----~ad~vI~Ld~p~~~~~~R~lkR~ 100 (171)
T PRK07261 62 IIDGNYSWCLYEERMQ-----EADQIIFLNFSRFNCLYRAFKRY 100 (171)
T ss_pred EEcCcchhhhHHHHHH-----HCCEEEEEcCCHHHHHHHHHHHH
Confidence 9999864422222222 46899999999999999999883
No 97
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.50 E-value=1.1e-13 Score=99.16 Aligned_cols=109 Identities=21% Similarity=0.326 Sum_probs=65.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH---------------HHHhcCCh------hhHHHHHHhhc---C
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR---------------REIASNSE------YGTTILNTIKE---G 65 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~---------------~~~~~~~~------~~~~~~~~l~~---~ 65 (196)
-+++|+|||||||||++++|. ++..++.|.+.- +......+ +-..+.+.... -
T Consensus 29 evv~iiGpSGSGKSTlLRclN---~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v 105 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLN---GLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV 105 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHH---CCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH
Confidence 478899999999999999999 777766665432 22222211 11111111111 0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCcEEEeCCC----CCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 66 KIVPSEVTVSLIQKEMESSDSKKFLIDGFP----RSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 66 ~~~~~~~~~~~i~~~l~~~~~~~~iid~~~----~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
...+.....+...+.|...+-... .+.|| .+++||+++++++...|++ +++|+|+.
T Consensus 106 ~~~~k~eA~~~A~~lL~~VGL~~k-a~~yP~qLSGGQqQRVAIARALaM~P~v-mLFDEPTS 165 (240)
T COG1126 106 KKLSKAEAREKALELLEKVGLADK-ADAYPAQLSGGQQQRVAIARALAMDPKV-MLFDEPTS 165 (240)
T ss_pred cCCCHHHHHHHHHHHHHHcCchhh-hhhCccccCcHHHHHHHHHHHHcCCCCE-EeecCCcc
Confidence 112233334444445543332222 44455 4699999999999999999 77999983
No 98
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.50 E-value=8.8e-13 Score=94.25 Aligned_cols=107 Identities=18% Similarity=0.271 Sum_probs=61.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhC-----CceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHH----HHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYG-----LTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSE----VTVSLIQ 78 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~i~ 78 (196)
.+++|+++|++||||||+++.|++.++ ..+++.+. +++..... +...... .....+.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~-~r~~~~~~-------------~~~~~~~~~~~~~~~~l~ 71 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDE-LREILGHY-------------GYDKQSRIEMALKRAKLA 71 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHH-HHhhcCCC-------------CCCHHHHHHHHHHHHHHH
Confidence 467999999999999999999999884 45555433 33322111 0000000 1111222
Q ss_pred HHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhh
Q 029287 79 KEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLN 131 (196)
Q Consensus 79 ~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~ 131 (196)
..+. ..+..+|+++.... .......+... .+.+++||++|++++.+|+.+
T Consensus 72 ~~l~-~~g~~VI~~~~~~~-~~~~~~~~~~~-~~~~~v~l~~~~e~~~~R~~~ 121 (176)
T PRK05541 72 KFLA-DQGMIVIVTTISMF-DEIYAYNRKHL-PNYFEVYLKCDMEELIRRDQK 121 (176)
T ss_pred HHHH-hCCCEEEEEeCCcH-HHHHHHHHhhc-CCeEEEEEeCCHHHHHHhchh
Confidence 2222 23456778765422 22222222222 456789999999999999864
No 99
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.48 E-value=4.3e-12 Score=95.58 Aligned_cols=160 Identities=18% Similarity=0.299 Sum_probs=90.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC---C--ceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYG---L--THLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSD 85 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~---~--~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~ 85 (196)
+|+++|+|||||||+++.|++.++ . .+++. +.++........ ...+.. .......+...+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~-D~lr~~~~~~~~---~~e~~~-------~~~~~~~i~~~l~~-- 67 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT-DLIRESFPVWKE---KYEEFI-------RDSTLYLIKTALKN-- 67 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc-HHHHHHhHHhhH---HhHHHH-------HHHHHHHHHHHHhC--
Confidence 478899999999999999999873 2 34444 334333211111 011111 11223344444443
Q ss_pred CCcEEEeCCCCCHHHHHHHHHH--hCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHH
Q 029287 86 SKKFLIDGFPRSEENRAAFERI--MGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYA 163 (196)
Q Consensus 86 ~~~~iid~~~~~~~~~~~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (196)
+..+|+|+.......+..+... -...+..+||+++|.+.+.+|...|. .. ...+.+.+....|+.... . +.
T Consensus 68 ~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~--~~-~~~~~i~~l~~r~e~p~~---~-~~ 140 (249)
T TIGR03574 68 KYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERG--EK-IPNEVIKDMYEKFDEPGT---K-YS 140 (249)
T ss_pred CCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCC--CC-CCHHHHHHHHHhhCCCCC---C-CC
Confidence 4557889865433333333221 12356778999999999999998873 21 234455554444443321 0 00
Q ss_pred hcCcEEEEeCCC--CHhHHHHHHHHHHHh
Q 029287 164 RRGKLYTINAVG--TVDEIFEQVRAVFAA 190 (196)
Q Consensus 164 ~~~~~~~I~~~~--~~~~v~~~i~~~i~~ 190 (196)
-..+.+.||.+. +++++.+.|.+.+..
T Consensus 141 wd~~~~~vd~~~~~~~~ei~~~i~~~~~~ 169 (249)
T TIGR03574 141 WDLPDLTIDTTKKIDYNEILEEILEISEN 169 (249)
T ss_pred ccCceEEecCCCCCCHHHHHHHHHHHhhc
Confidence 012567788765 668888888766543
No 100
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.48 E-value=1.7e-12 Score=91.09 Aligned_cols=152 Identities=20% Similarity=0.289 Sum_probs=85.6
Q ss_pred CCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCCCcEE-Ee-CC
Q 029287 18 PGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE-GKIVPSEVTVSLIQKEMESSDSKKFL-ID-GF 94 (196)
Q Consensus 18 ~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~i~~~l~~~~~~~~i-id-~~ 94 (196)
+||||||+++.|++.+|+.++|.|+.+.+... ..+.+.+.. |...+...-.+.+.+.+... ..+| +. |.
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g------~si~~i~~~~G~~~fr~~E~~~l~~l~~~~--~~VIa~GGG~ 72 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTG------MSISEIFAEEGEEAFRELESEALRELLKEN--NCVIACGGGI 72 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHT------SHHHHHHHHHHHHHHHHHHHHHHHHHHCSS--SEEEEE-TTG
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHhC------CcHHHHHHcCChHHHHHHHHHHHHHHhccC--cEEEeCCCCC
Confidence 69999999999999999999999998866432 233333321 22112222334444444432 3332 22 24
Q ss_pred CCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCC-cHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeC
Q 029287 95 PRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDD-NIDTVRKRLQVFKALNLPVINYYARRGKLYTINA 173 (196)
Q Consensus 95 ~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 173 (196)
+.....+..+. ....+|||+.|++.+.+|+..+.. |+.- ...........+. ...+.+..+ ..++++.
T Consensus 73 ~~~~~~~~~L~-----~~g~vI~L~~~~~~l~~Rl~~~~~-Rp~l~~~~~~~~~~~~~~-~R~~~Y~~~----a~~~v~~ 141 (158)
T PF01202_consen 73 VLKEENRELLK-----ENGLVIYLDADPEELAERLRARDN-RPLLKGKMEHEEILELLF-EREPLYEQA----ADIVVDT 141 (158)
T ss_dssp GGSHHHHHHHH-----HHSEEEEEE--HHHHHHHHHHHCT-SGGTCSHHHHHHHHHHHH-HHHHHHHHH----SSEEEET
T ss_pred cCcHHHHHHHH-----hCCEEEEEeCCHHHHHHHHhCCCC-CCCCCCCChHHHHHHHHH-HHHHHHHhc----CeEEEeC
Confidence 44555555544 346689999999999999987742 3222 1111111122222 222223232 3356777
Q ss_pred CCCH-hHHHHHHHHHH
Q 029287 174 VGTV-DEIFEQVRAVF 188 (196)
Q Consensus 174 ~~~~-~~v~~~i~~~i 188 (196)
+..+ +++.++|.+.+
T Consensus 142 ~~~~~~~i~~~i~~~l 157 (158)
T PF01202_consen 142 DGSPPEEIAEEILEFL 157 (158)
T ss_dssp SSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 6665 89988887765
No 101
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.47 E-value=3.4e-12 Score=92.44 Aligned_cols=120 Identities=14% Similarity=0.168 Sum_probs=72.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhh-HHHHH----HhhcCCCCCHH----------H
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYG-TTILN----TIKEGKIVPSE----------V 72 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~----~l~~~~~~~~~----------~ 72 (196)
.+++|+|.|+|||||||+++.|++.+|+.++..+|++++.+......+ ....+ .-..+....+. .
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~ 81 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARA 81 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 357999999999999999999999999999999999988776543322 11111 00001111110 1
Q ss_pred ----HHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeec-ChHHHHHHHhhcc
Q 029287 73 ----TVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDC-PEEEMVNRVLNRN 133 (196)
Q Consensus 73 ----~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~-~~~~~~~Rl~~r~ 133 (196)
+...+...+. .+..+|+++.......+..... .. ..++++.+ +++...+|+..|.
T Consensus 82 v~~~L~~va~~~l~--~G~sVIvEgv~l~p~~~~~~~~---~~-v~~i~l~v~d~e~lr~Rl~~R~ 141 (197)
T PRK12339 82 IMPGINRVIRRALL--NGEDLVIESLYFHPPMIDENRT---NN-IRAFYLYIRDAELHRSRLADRI 141 (197)
T ss_pred HHHHHHHHHHHHHH--cCCCEEEEecCcCHHHHHHHHh---cC-eEEEEEEeCCHHHHHHHHHHHh
Confidence 1112222222 4667889987666554422111 12 24466655 5788889999984
No 102
>PTZ00301 uridine kinase; Provisional
Probab=99.47 E-value=2.6e-13 Score=99.08 Aligned_cols=175 Identities=16% Similarity=0.195 Sum_probs=88.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHh----C---CceechhHHHHHHHh----------cCChh---hHHHH---HHhhcC
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNY----G---LTHLSAGELLRREIA----------SNSEY---GTTIL---NTIKEG 65 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~----~---~~~i~~~~~~~~~~~----------~~~~~---~~~~~---~~l~~~ 65 (196)
-++|+|.|+|||||||+++.|.+.+ | ...+..|.+++.... .+.+. ...+. ..+..|
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g 82 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSG 82 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcC
Confidence 3899999999999999999998776 2 224455555432100 00000 00011 122222
Q ss_pred CCC----CHHHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcH
Q 029287 66 KIV----PSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNI 141 (196)
Q Consensus 66 ~~~----~~~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~ 141 (196)
..+ .+..............+...+|++|+..-.. ..+....|+.||+++|.+++..|...|.......+.
T Consensus 83 ~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~~------~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~ 156 (210)
T PTZ00301 83 KTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTN------AELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTF 156 (210)
T ss_pred CcccCCCcccccCCcCCceEEeCCCcEEEEechhhhCC------HHHHHhCCEEEEEeCChhHHHHHHHhhhHHhcCCCH
Confidence 211 1111111111111112335667788643101 112225688999999999999999998522112233
Q ss_pred HHHHHHHHHHHhchHhHHHHHHh----cCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287 142 DTVRKRLQVFKALNLPVINYYAR----RGKLYTINAVGTVDEIFEQVRAVFAALKL 193 (196)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~I~~~~~~~~v~~~i~~~i~~~~~ 193 (196)
+...+ .|...+.+....|.. .+.+ +|...++.+.....+...+...++
T Consensus 157 e~v~~---~~~~~v~~~~~~~I~p~k~~ADi-Ii~~~~~~~~~~~~~~~~~~~~~~ 208 (210)
T PTZ00301 157 ESVIE---QYEATVRPMYYAYVEPSKVYADI-IVPSWKDNSVAVGVLRAKLNHDLE 208 (210)
T ss_pred HHHHH---HHHHhhcccHHHHcCccccCCcE-EEcCCCcchHHHHHHHHHHHHHcc
Confidence 33322 344444443333333 2333 456555656666666666665543
No 103
>PRK00023 cmk cytidylate kinase; Provisional
Probab=99.47 E-value=5.6e-12 Score=93.36 Aligned_cols=38 Identities=32% Similarity=0.538 Sum_probs=35.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR 46 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~ 46 (196)
+++|+|.|++||||||+++.|++++|+.+++.|.++|.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~ 41 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA 41 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence 47999999999999999999999999999999998765
No 104
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.47 E-value=7.5e-14 Score=101.73 Aligned_cols=174 Identities=20% Similarity=0.192 Sum_probs=106.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH-------HhcCChhhHHHHHHhhcCCCC---CHH---HHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE-------IASNSEYGTTILNTIKEGKIV---PSE---VTVSL 76 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~---~~~---~~~~~ 76 (196)
=.++|+|.+||||||+++.|+ |+..++.|.+..+. +..+.+...+-++++.....+ ... ...+.
T Consensus 54 e~vGiiG~NGaGKSTLlklia---Gi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~e 130 (249)
T COG1134 54 ERVGIIGHNGAGKSTLLKLIA---GIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDE 130 (249)
T ss_pred CEEEEECCCCCcHHHHHHHHh---CccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHHHH
Confidence 378999999999999999999 98888877663321 122222222223322211111 122 22334
Q ss_pred HHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHH-HHHHHHHhch
Q 029287 77 IQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVR-KRLQVFKALN 155 (196)
Q Consensus 77 i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~-~~~~~~~~~~ 155 (196)
+.+..+..+.-..=+..|+.++..+++|.-+....||+ +++|+-..+......++-..+. .+..+ .....+-+|+
T Consensus 131 IieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdI-LllDEvlavGD~~F~~K~~~rl---~e~~~~~~tiv~VSHd 206 (249)
T COG1134 131 IIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDI-LLLDEVLAVGDAAFQEKCLERL---NELVEKNKTIVLVSHD 206 (249)
T ss_pred HHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCE-EEEehhhhcCCHHHHHHHHHHH---HHHHHcCCEEEEEECC
Confidence 44444443322222677999999999999999999999 7788866333333322200000 00000 0122567788
Q ss_pred HhHHHHHHhcCcEEE---EeCCCCHhHHHHHHHHHHHh
Q 029287 156 LPVINYYARRGKLYT---INAVGTVDEIFEQVRAVFAA 190 (196)
Q Consensus 156 ~~~~~~~~~~~~~~~---I~~~~~~~~v~~~i~~~i~~ 190 (196)
...+..+|++..|+. |-..++++++.+...+.+.+
T Consensus 207 ~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~~~~~ 244 (249)
T COG1134 207 LGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEEDLAD 244 (249)
T ss_pred HHHHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHHhhhh
Confidence 889999999888875 77788999999887766544
No 105
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.47 E-value=8.2e-14 Score=102.04 Aligned_cols=146 Identities=20% Similarity=0.292 Sum_probs=90.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHH---hcCCh-----------hhHHHHHHhhcCCCC---CHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREI---ASNSE-----------YGTTILNTIKEGKIV---PSEV 72 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~---~~~~~-----------~~~~~~~~l~~~~~~---~~~~ 72 (196)
=+++|.|||||||||+++.++ |+...+.|.+..... .+..+ .+.++.+++..+... ....
T Consensus 30 EfvsilGpSGcGKSTLLriiA---GL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e 106 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIA---GLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAE 106 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchHh
Confidence 377889999999999999999 998888876543221 11111 345555665544332 2333
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCC----CHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcH-HHHHH-
Q 029287 73 TVSLIQKEMESSDSKKFLIDGFPR----SEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNI-DTVRK- 146 (196)
Q Consensus 73 ~~~~i~~~l~~~~~~~~iid~~~~----~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~-~~~~~- 146 (196)
....+.+.++..+-.++ -+.||. +++|++++++++...|++ +++|+|+.-+..--+.. ..+.. ..+++
T Consensus 107 ~~~~a~~~L~~VgL~~~-~~~~P~qLSGGMrQRVaiARAL~~~P~l-LLlDEPFgALDalTR~~----lq~~l~~lw~~~ 180 (248)
T COG1116 107 ARERAKELLELVGLAGF-EDKYPHQLSGGMRQRVAIARALATRPKL-LLLDEPFGALDALTREE----LQDELLRLWEET 180 (248)
T ss_pred HHHHHHHHHHHcCCcch-hhcCccccChHHHHHHHHHHHHhcCCCE-EEEcCCcchhhHHHHHH----HHHHHHHHHHhh
Confidence 34456666665554444 555664 699999999999999999 88999994333322211 00111 11221
Q ss_pred -HHHHHHhchHhHHHHHHh
Q 029287 147 -RLQVFKALNLPVINYYAR 164 (196)
Q Consensus 147 -~~~~~~~~~~~~~~~~~~ 164 (196)
....+.+|+.+.+-+.++
T Consensus 181 ~~TvllVTHdi~EAv~Lsd 199 (248)
T COG1116 181 RKTVLLVTHDVDEAVYLAD 199 (248)
T ss_pred CCEEEEEeCCHHHHHhhhC
Confidence 123466677777777776
No 106
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.47 E-value=5.4e-12 Score=88.07 Aligned_cols=109 Identities=23% Similarity=0.317 Sum_probs=63.5
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcEEE
Q 029287 12 CFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKFLI 91 (196)
Q Consensus 12 i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~ii 91 (196)
|+|+|++||||||+++.|++.+|+.+++.+.++...... ... .+.+.. +...........+.. +.. ... .|+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~--~~~-~~~~~~--~~~~~~~~e~~~~~~-~~~-~~~-~vi 73 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGM--SIP-EIFAEE--GEEGFRELEREVLLL-LLT-KEN-AVI 73 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCC--CHH-HHHHHH--CHHHHHHHHHHHHHH-Hhc-cCC-cEE
Confidence 678999999999999999999999999998887654322 111 111111 110001111112222 222 123 344
Q ss_pred eC---CCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc
Q 029287 92 DG---FPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN 133 (196)
Q Consensus 92 d~---~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~ 133 (196)
.+ +......+..+ ....++|||++|++.+.+|+..|.
T Consensus 74 ~~g~~~i~~~~~~~~~-----~~~~~~i~l~~~~e~~~~R~~~r~ 113 (154)
T cd00464 74 ATGGGAVLREENRRLL-----LENGIVVWLDASPEELLERLARDK 113 (154)
T ss_pred ECCCCccCcHHHHHHH-----HcCCeEEEEeCCHHHHHHHhccCC
Confidence 42 21222221111 246788999999999999998873
No 107
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.47 E-value=3.7e-13 Score=98.06 Aligned_cols=161 Identities=19% Similarity=0.257 Sum_probs=95.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCC----------------------hhhHHHHHHhhcCCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNS----------------------EYGTTILNTIKEGKI 67 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~----------------------~~~~~~~~~l~~~~~ 67 (196)
-+++|.|+|||||||+++.|+ |+...+.|++......... .....+.+.+.+...
T Consensus 34 e~lgivGeSGsGKSTL~r~l~---Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~ 110 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLA---GLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLR 110 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHh---cccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhc
Confidence 478999999999999999999 8887777766432211000 012223333332221
Q ss_pred CC-HHHHHHHHHHHHhcCCCCcEEEeCCCC----CHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHH
Q 029287 68 VP-SEVTVSLIQKEMESSDSKKFLIDGFPR----SEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNID 142 (196)
Q Consensus 68 ~~-~~~~~~~i~~~l~~~~~~~~iid~~~~----~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~ 142 (196)
.. -....+.+.+.+...+-..-..+++|+ ++.||.++++++...|.+ +++|+|...+.-.+... -+.
T Consensus 111 ~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~Pkl-LIlDEptSaLD~siQa~-------Iln 182 (252)
T COG1124 111 PHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKL-LILDEPTSALDVSVQAQ-------ILN 182 (252)
T ss_pred cCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCE-EEecCchhhhcHHHHHH-------HHH
Confidence 10 011112255555554433334777775 589999999999999999 77999995444433322 111
Q ss_pred HHHHHH------HHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHH
Q 029287 143 TVRKRL------QVFKALNLPVINYYARRGKLYT---INAVGTVDEIF 181 (196)
Q Consensus 143 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~ 181 (196)
.+.+.. -.|.+|+...+.++|++..++. +....+.+++.
T Consensus 183 lL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 183 LLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred HHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhh
Confidence 111111 2567899999999999755543 33334444443
No 108
>PRK06547 hypothetical protein; Provisional
Probab=99.46 E-value=1.6e-13 Score=97.28 Aligned_cols=125 Identities=17% Similarity=0.229 Sum_probs=70.5
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHh-hcCCCCCHH--HHHHHHHHHHh
Q 029287 6 GKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTI-KEGKIVPSE--VTVSLIQKEME 82 (196)
Q Consensus 6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~--~~~~~i~~~l~ 82 (196)
+..+++|+|.|++||||||+++.|++.++...++.++++...- ........+.+.+ ..|....-. ...........
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~-~~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~~~~ 90 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWH-GLAAASEHVAEAVLDEGRPGRWRWDWANNRPGDWVS 90 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecccc-cCChHHHHHHHHHHhCCCCceecCCCCCCCCCCcEE
Confidence 4567899999999999999999999999999999888764210 1111111222222 222111000 00000000111
Q ss_pred cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc
Q 029287 83 SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN 133 (196)
Q Consensus 83 ~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~ 133 (196)
......+|++|......+...+.. ....-++|||++|++++.+|+.+|.
T Consensus 91 l~~~~vVIvEG~~al~~~~r~~~d--~~g~v~~I~ld~~~~vr~~R~~~Rd 139 (172)
T PRK06547 91 VEPGRRLIIEGVGSLTAANVALAS--LLGEVLTVWLDGPEALRKERALARD 139 (172)
T ss_pred eCCCCeEEEEehhhccHHHHHHhc--cCCCEEEEEEECCHHHHHHHHHhcC
Confidence 123456778876432222111111 1112278999999999999999993
No 109
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.46 E-value=5e-12 Score=88.78 Aligned_cols=161 Identities=14% Similarity=0.189 Sum_probs=93.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCh--------hhHHHHHHhhcCCCCCHHHH------
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSE--------YGTTILNTIKEGKIVPSEVT------ 73 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~------ 73 (196)
+.++++|.||||+||||++++|.+.. -..++++...| .++++.. ....+.+.+..+..+.....
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR-~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYG 80 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTR-KPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYG 80 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccC-CCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCccc
Confidence 45788999999999999999999998 44444433332 2233332 23346666666655543221
Q ss_pred --HHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEE-EEeecCh-HHHHHHHhhccCCCCCCcHHHHHHHHH
Q 029287 74 --VSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIV-LFFDCPE-EEMVNRVLNRNEGRVDDNIDTVRKRLQ 149 (196)
Q Consensus 74 --~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~-i~ld~~~-~~~~~Rl~~r~~~~~~~~~~~~~~~~~ 149 (196)
...+...+.. +..+++|== +..-.+.....|+.+ ||+..|. +.+.+|+..| ..++.+.++.|+.
T Consensus 81 T~~~~ve~~~~~--G~~vildId------~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~R----gtds~e~I~~Rl~ 148 (191)
T COG0194 81 TSREPVEQALAE--GKDVILDID------VQGALQVKKKMPNAVSIFILPPSLEELERRLKGR----GTDSEEVIARRLE 148 (191)
T ss_pred CcHHHHHHHHhc--CCeEEEEEe------hHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHcc----CCCCHHHHHHHHH
Confidence 3344455553 445555511 122222222344554 5555544 7778888776 6778999998887
Q ss_pred HHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287 150 VFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFA 189 (196)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~ 189 (196)
....... .+.+ ...++| +.+++...+++..++.
T Consensus 149 ~a~~Ei~----~~~~-fdyviv--Ndd~e~a~~~l~~ii~ 181 (191)
T COG0194 149 NAKKEIS----HADE-FDYVIV--NDDLEKALEELKSIIL 181 (191)
T ss_pred HHHHHHH----HHHh-CCEEEE--CccHHHHHHHHHHHHH
Confidence 6555422 2222 222233 3478888888877663
No 110
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.45 E-value=1.7e-12 Score=95.10 Aligned_cols=174 Identities=16% Similarity=0.206 Sum_probs=85.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhC---CceechhHHHHHH--------HhcCCh-----hhHHHHHH---hhcCCC
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYG---LTHLSAGELLRRE--------IASNSE-----YGTTILNT---IKEGKI 67 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~---~~~i~~~~~~~~~--------~~~~~~-----~~~~~~~~---l~~~~~ 67 (196)
+...+|+|.|++||||||+++.|...++ +..++.++.+... .....+ ....+.+. +..|..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~ 83 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNGSP 83 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCCCC
Confidence 3458999999999999999999998875 3445554432110 000000 00111111 111211
Q ss_pred CC----HHHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccC-CCCCCcHH
Q 029287 68 VP----SEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNE-GRVDDNID 142 (196)
Q Consensus 68 ~~----~~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~-~~~~~~~~ 142 (196)
+. +..................+|+||++.... ..+....|.+||+++|.+++.+|+..|.. .|.....+
T Consensus 84 v~~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~~~~------~~~~~~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~ 157 (207)
T TIGR00235 84 IDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPLFD------ERLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDS 157 (207)
T ss_pred EecccceeecCCCCCceEEeCCCCEEEEEehhhhch------HhHHHhCCEEEEEECChhHHHHHHHHHHHHhhCCCHHH
Confidence 10 000000000111112235677887653211 12223578999999999999999988731 12222222
Q ss_pred HHHHHHHHHHhchHhHHHHHHhc---CcEEEEeCCCCHhHHHHHHHHHHHh
Q 029287 143 TVRKRLQVFKALNLPVINYYARR---GKLYTINAVGTVDEIFEQVRAVFAA 190 (196)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~I~~~~~~~~v~~~i~~~i~~ 190 (196)
..+ .|.....+....+..+ ..-++|+++++.+...+.+...+..
T Consensus 158 ~~~----~~~~~~~~~~~~~i~~~~~~Ad~vi~~~~~~~~~~~~~~~~~~~ 204 (207)
T TIGR00235 158 VID----QYRKTVRPMYEQFVEPTKQYADLIIPEGGRNEVAINVLDTKIKH 204 (207)
T ss_pred HHH----HHHHhhhhhHHHhCcccccccEEEEcCCCCchHHHHHHHHHHHH
Confidence 222 3333333333222211 1224566666767766665554443
No 111
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.45 E-value=2.4e-12 Score=91.47 Aligned_cols=161 Identities=16% Similarity=0.232 Sum_probs=87.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhC---CceechhHHHHHHHhcCChhh---HHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYG---LTHLSAGELLRREIASNSEYG---TTILNTIKEGKIVPSEVTVSLIQKEMES 83 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~---~~~i~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~i~~~l~~ 83 (196)
+.|+++|+|||||||+++.|++.+. ..+++.+.=+......+...+ ..+++.. .......+..++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~-------~ks~~rlldSalk- 73 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESF-------LKSVERLLDSALK- 73 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHH-------HHHHHHHHHHHhc-
Confidence 5777899999999999999998872 222222110111111111111 0111111 1122234444444
Q ss_pred CCCCcEEEeC--CCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCC-cHHHHHHHHHHHHhchHhHHH
Q 029287 84 SDSKKFLIDG--FPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDD-NIDTVRKRLQVFKALNLPVIN 160 (196)
Q Consensus 84 ~~~~~~iid~--~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 160 (196)
+..+|+|. |-.++...+.+...-...+--+||+.+|+++|.+|-..|+ +. -.+.+++....|++.+...
T Consensus 74 --n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~erg----epip~Evl~qly~RfEePn~~~-- 145 (261)
T COG4088 74 --NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERG----EPIPEEVLRQLYDRFEEPNPDR-- 145 (261)
T ss_pred --ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCC----CCCCHHHHHHHHHhhcCCCCCc--
Confidence 55677775 3344554444444334466667999999999999987663 22 3556666556666654311
Q ss_pred HHHhcCcEEEEeCCCCHhHHHHHHHHHH
Q 029287 161 YYARRGKLYTINAVGTVDEIFEQVRAVF 188 (196)
Q Consensus 161 ~~~~~~~~~~I~~~~~~~~v~~~i~~~i 188 (196)
.+ ..++++|+......++.+.+...+
T Consensus 146 rW--Dspll~id~~d~~t~~IDfiesvl 171 (261)
T COG4088 146 RW--DSPLLVIDDSDVSTEVIDFIESVL 171 (261)
T ss_pred cc--cCceEEEecccccccchhHHHHHH
Confidence 11 135667775555556666655544
No 112
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.45 E-value=1e-11 Score=88.96 Aligned_cols=162 Identities=15% Similarity=0.162 Sum_probs=84.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCc---eechhHHHHHHHhcCC----hhhHHHHHHhhcCCCCC--H-----HHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLT---HLSAGELLRREIASNS----EYGTTILNTIKEGKIVP--S-----EVTVS 75 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~---~i~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~--~-----~~~~~ 75 (196)
.+++|+|+|||||||+++.|+..++.. .+......+.....+. -....+......+.... . .-...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPA 81 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChH
Confidence 368889999999999999999877432 1110000010000000 01112222222221100 0 00011
Q ss_pred HHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhch
Q 029287 76 LIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALN 155 (196)
Q Consensus 76 ~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~ 155 (196)
.+...+. .+..+|+++.. .....+...+ ....+|||++|++++.+|+..| ++. +.+.+.+++..+....
T Consensus 82 ~i~~~~~--~g~~vv~~g~~---~~~~~~~~~~--~~~~~i~l~~~~~~~~~Rl~~R--~~~--~~~~~~~rl~~~~~~~ 150 (179)
T TIGR02322 82 EIDQWLE--AGDVVVVNGSR---AVLPEARQRY--PNLLVVNITASPDVLAQRLAAR--GRE--SREEIEERLARSARFA 150 (179)
T ss_pred HHHHHHh--cCCEEEEECCH---HHHHHHHHHC--CCcEEEEEECCHHHHHHHHHHc--CCC--CHHHHHHHHHHHhhcc
Confidence 2233333 34556777642 1122222222 2446799999999999999988 332 3455555543322221
Q ss_pred HhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287 156 LPVINYYARRGKLYTINAVGTVDEIFEQVRAVFA 189 (196)
Q Consensus 156 ~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~ 189 (196)
. ....+.+|+++++++++.++|.+.+.
T Consensus 151 ~-------~~~~~~vi~~~~~~ee~~~~i~~~l~ 177 (179)
T TIGR02322 151 A-------APADVTTIDNSGSLEVAGETLLRLLR 177 (179)
T ss_pred c-------ccCCEEEEeCCCCHHHHHHHHHHHHc
Confidence 0 23456668888999999999887764
No 113
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.45 E-value=2.9e-13 Score=98.33 Aligned_cols=165 Identities=24% Similarity=0.397 Sum_probs=105.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------------HHHHhcCChhhHH-----HHHH----hh
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------------RREIASNSEYGTT-----ILNT----IK 63 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------------~~~~~~~~~~~~~-----~~~~----l~ 63 (196)
-+.+|.|+|||||||+.+.+. |....+.|++. ++......+.+.. +.++ ++
T Consensus 35 ei~~iiGgSGsGKStlLr~I~---Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplr 111 (263)
T COG1127 35 EILAILGGSGSGKSTLLRLIL---GLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLR 111 (263)
T ss_pred cEEEEECCCCcCHHHHHHHHh---ccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehH
Confidence 588999999999999999999 77766655542 2222222232222 1222 22
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCCcEEEeCCCC----CHHHHHHHHHHhCCCCcEEEEeecCh-----------HHHHHH
Q 029287 64 EGKIVPSEVTVSLIQKEMESSDSKKFLIDGFPR----SEENRAAFERIMGAEPDIVLFFDCPE-----------EEMVNR 128 (196)
Q Consensus 64 ~~~~~~~~~~~~~i~~~l~~~~~~~~iid~~~~----~~~~~~~~~~~~~~~p~~~i~ld~~~-----------~~~~~R 128 (196)
+....+.....+.+..-++..+-.+.+.+.||. ++..+.++++++...|++ +++|+|+ +.++.+
T Consensus 112 e~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPel-l~~DEPtsGLDPI~a~~~~~LI~~ 190 (263)
T COG1127 112 EHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPEL-LFLDEPTSGLDPISAGVIDELIRE 190 (263)
T ss_pred hhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCE-EEecCCCCCCCcchHHHHHHHHHH
Confidence 344466677777777777776666666777775 589999999999999999 8899998 455555
Q ss_pred HhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHHHHHHHHh
Q 029287 129 VLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQVRAVFAA 190 (196)
Q Consensus 129 l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~i~~~i~~ 190 (196)
+.... .-+. ...+|+.......+++..++. |-..++++++.+.=...+++
T Consensus 191 L~~~l----g~T~--------i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~sd~P~v~q 243 (263)
T COG1127 191 LNDAL----GLTV--------IMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDPWVRQ 243 (263)
T ss_pred HHHhh----CCEE--------EEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhCCCHHHHH
Confidence 54431 1111 234455555555566544443 66788999987653333333
No 114
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.44 E-value=1.9e-13 Score=102.54 Aligned_cols=165 Identities=23% Similarity=0.323 Sum_probs=99.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH---------------HHhcCChhhH-----HHHHHhhcCCCCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR---------------EIASNSEYGT-----TILNTIKEGKIVP 69 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~---------------~~~~~~~~~~-----~~~~~l~~~~~~~ 69 (196)
-.+++.|||||||||++++++ |+...+.|.+... .+....+++. ++.+++..|....
T Consensus 29 e~vaLlGpSGaGKsTlLRiIA---GLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~ 105 (345)
T COG1118 29 ELVALLGPSGAGKSTLLRIIA---GLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR 105 (345)
T ss_pred cEEEEECCCCCcHHHHHHHHh---CcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhccccc
Confidence 478999999999999999999 9888776655311 1111112222 2345565554322
Q ss_pred -----HHHHHHHHHHHHhcCCCCcEEEeCCCC----CHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCc
Q 029287 70 -----SEVTVSLIQKEMESSDSKKFLIDGFPR----SEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDN 140 (196)
Q Consensus 70 -----~~~~~~~i~~~l~~~~~~~~iid~~~~----~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~ 140 (196)
.......+.+.+...+..+ +-++||. ++.|++++++++...|.+ ++||+|+.-+...+++.. ..-
T Consensus 106 ~~~p~~~~~r~rv~elL~lvqL~~-la~ryP~QLSGGQrQRVALARALA~eP~v-LLLDEPf~ALDa~vr~~l----r~w 179 (345)
T COG1118 106 KERPSEAEIRARVEELLRLVQLEG-LADRYPAQLSGGQRQRVALARALAVEPKV-LLLDEPFGALDAKVRKEL----RRW 179 (345)
T ss_pred ccCCChhhHHHHHHHHHHHhcccc-hhhcCchhcChHHHHHHHHHHHhhcCCCe-EeecCCchhhhHHHHHHH----HHH
Confidence 2233334444455434444 4777775 589999999999999998 889999966666555430 001
Q ss_pred HHHHHHHH---HHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287 141 IDTVRKRL---QVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ 183 (196)
Q Consensus 141 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~ 183 (196)
...+.++. ..|.+|+...+...+++.-++. |...++++++++.
T Consensus 180 Lr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~ 228 (345)
T COG1118 180 LRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDH 228 (345)
T ss_pred HHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcC
Confidence 11222221 2456677766666666432221 3445688888755
No 115
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.44 E-value=4.8e-12 Score=93.08 Aligned_cols=39 Identities=26% Similarity=0.447 Sum_probs=35.7
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE 47 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~ 47 (196)
+++|+|.||+||||||+++.|++++|+.+++.|.+++..
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~ 40 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI 40 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence 479999999999999999999999999999999887654
No 116
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.43 E-value=3.8e-12 Score=88.11 Aligned_cols=103 Identities=17% Similarity=0.278 Sum_probs=63.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcEE
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKFL 90 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~i 90 (196)
+|+|.|++||||||+++.|++.+|+++++.+.+....... ..+...... .........+.+ +. ....||
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~~-------~~~~~~~~~-~i~~~l~~~~~~-~~--~~~~~V 69 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGK-------LASEVAAIP-EVRKALDERQRE-LA--KKPGIV 69 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHHH-------HHHHhcccH-hHHHHHHHHHHH-Hh--hCCCEE
Confidence 4789999999999999999999999999987442221100 000000000 001111222222 22 234578
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhc
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNR 132 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r 132 (196)
+++..... .+....+++|||++|++.+.+|+.+|
T Consensus 70 idg~~~~~--------~~~~~~~~~i~l~~~~~~r~~R~~~r 103 (147)
T cd02020 70 LEGRDIGT--------VVFPDADLKIFLTASPEVRAKRRAKQ 103 (147)
T ss_pred EEeeeeee--------EEcCCCCEEEEEECCHHHHHHHHHHH
Confidence 88754211 11235789999999999999999985
No 117
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.41 E-value=2e-13 Score=101.15 Aligned_cols=161 Identities=19% Similarity=0.303 Sum_probs=94.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH-----------HHhcCC-------hhhHHHHHHhhcCCCC---
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR-----------EIASNS-------EYGTTILNTIKEGKIV--- 68 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~-----------~~~~~~-------~~~~~~~~~l~~~~~~--- 68 (196)
-+++|+||+||||||+.+.+. |+.....|.+... .+.+.+ .+..+..+.+.-|...
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iL---Gll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g 107 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAIL---GLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKG 107 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccc
Confidence 588999999999999999999 8766666555311 122222 2233345555443211
Q ss_pred ----CHHHHHHHHHHHHhcCCC---CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh-------HHHHHHHhhccC
Q 029287 69 ----PSEVTVSLIQKEMESSDS---KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE-------EEMVNRVLNRNE 134 (196)
Q Consensus 69 ----~~~~~~~~i~~~l~~~~~---~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~-------~~~~~Rl~~r~~ 134 (196)
....-.+.+.++++..+. ..--+..++.++.|++.+++++...|++ ++||+|+ +..+-++.++..
T Consensus 108 ~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~l-llLDEP~~gvD~~~~~~i~~lL~~l~ 186 (254)
T COG1121 108 WFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDL-LLLDEPFTGVDVAGQKEIYDLLKELR 186 (254)
T ss_pred ccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCE-EEecCCcccCCHHHHHHHHHHHHHHH
Confidence 111224555566664332 2223666888999999999999999999 8899999 233333333210
Q ss_pred CCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEE--EeCCCCHhHHHHH
Q 029287 135 GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYT--INAVGTVDEIFEQ 183 (196)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--I~~~~~~~~v~~~ 183 (196)
. + .... ...+|+......++++.-++. +.+.++++++.+.
T Consensus 187 ~--e-g~tI------l~vtHDL~~v~~~~D~vi~Ln~~~~~~G~~~~~~~~ 228 (254)
T COG1121 187 Q--E-GKTV------LMVTHDLGLVMAYFDRVICLNRHLIASGPPEEVLTE 228 (254)
T ss_pred H--C-CCEE------EEEeCCcHHhHhhCCEEEEEcCeeEeccChhhccCH
Confidence 0 0 1111 334455555555555432221 5577888888754
No 118
>PRK06696 uridine kinase; Validated
Probab=99.39 E-value=1.1e-11 Score=91.90 Aligned_cols=121 Identities=16% Similarity=0.092 Sum_probs=67.1
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHHHh---CCce--echhHHHHHH-----HhcCChh--------hHHHHHHhh----
Q 029287 6 GKGPFICFVLGGPGSGKGTQCAKIVKNY---GLTH--LSAGELLRRE-----IASNSEY--------GTTILNTIK---- 63 (196)
Q Consensus 6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~---~~~~--i~~~~~~~~~-----~~~~~~~--------~~~~~~~l~---- 63 (196)
.+.+++|+|.|++||||||+++.|++.+ |..+ ++.|+++... .....+. ...+.+.+.
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l~ 98 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPLG 98 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhcc
Confidence 4578999999999999999999999998 5444 3456654211 1111111 111222211
Q ss_pred cCCC--C----CHHHHHHHHH-HHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc
Q 029287 64 EGKI--V----PSEVTVSLIQ-KEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN 133 (196)
Q Consensus 64 ~~~~--~----~~~~~~~~i~-~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~ 133 (196)
.+.. + .+........ ..........+|+++... +...+....|++||+++|.+++.+|+..|.
T Consensus 99 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l-------~~~~~~~~~d~~i~v~~~~e~~~~R~~~Rd 168 (223)
T PRK06696 99 PNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFL-------LRPELRDLWDYKIFLDTDFEVSRRRGAKRD 168 (223)
T ss_pred CCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHH-------hhhhHHhhCCEEEEEECCHHHHHHHHHHhh
Confidence 1110 1 1110001000 111112234567787531 222233356899999999999999999884
No 119
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.39 E-value=2e-11 Score=87.76 Aligned_cols=162 Identities=17% Similarity=0.257 Sum_probs=91.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCh--------hhHHHHHHhhcCCCCCHH--------
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSE--------YGTTILNTIKEGKIVPSE-------- 71 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~-------- 71 (196)
++++|+|.|||||||||+++.|.+.+.-.+....... +...++.. ....+.+.+..+..+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TT-R~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YG 81 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTT-RAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYG 81 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccC-CCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeec
Confidence 5789999999999999999999988632222222222 22222211 223345555555444321
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCc--EEEEeecC-hHHHHHHHhhccCCCCCCcHHHHHHHH
Q 029287 72 VTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPD--IVLFFDCP-EEEMVNRVLNRNEGRVDDNIDTVRKRL 148 (196)
Q Consensus 72 ~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~--~~i~ld~~-~~~~~~Rl~~r~~~~~~~~~~~~~~~~ 148 (196)
...+.+...+.. +..+|++--+.+.. .+.. ..|+ ++||+..| .+.+.+|+.+| ...+.+.+++|+
T Consensus 82 t~~~~i~~~~~~--g~~~i~d~~~~g~~---~l~~---~~~~~~~~Ifi~pps~e~l~~RL~~R----~~~s~e~i~~Rl 149 (186)
T PRK14737 82 TPKAFIEDAFKE--GRSAIMDIDVQGAK---IIKE---KFPERIVTIFIEPPSEEEWEERLIHR----GTDSEESIEKRI 149 (186)
T ss_pred CcHHHHHHHHHc--CCeEEEEcCHHHHH---HHHH---hCCCCeEEEEEECCCHHHHHHHHHhc----CCCCHHHHHHHH
Confidence 223445555553 55667774332222 2222 2454 57888885 58899999888 334566777776
Q ss_pred HHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287 149 QVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFA 189 (196)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~ 189 (196)
...... .. +..... ++|+++ ++++..+++..++.
T Consensus 150 ~~~~~e----~~-~~~~~D-~vI~N~-dle~a~~ql~~ii~ 183 (186)
T PRK14737 150 ENGIIE----LD-EANEFD-YKIIND-DLEDAIADLEAIIC 183 (186)
T ss_pred HHHHHH----Hh-hhccCC-EEEECc-CHHHHHHHHHHHHh
Confidence 653321 11 122223 345555 88999888877664
No 120
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.38 E-value=6.3e-12 Score=107.38 Aligned_cols=38 Identities=24% Similarity=0.401 Sum_probs=35.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE 47 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~ 47 (196)
++|+|.|||||||||+++.|++.+|+.+++.|.++|..
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~ 39 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRAC 39 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHH
Confidence 48999999999999999999999999999999987763
No 121
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.38 E-value=4.8e-13 Score=99.51 Aligned_cols=162 Identities=23% Similarity=0.318 Sum_probs=87.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH-------HH-------HHHhcC-----ChhhHHHHHHhhcCCC---
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL-------LR-------REIASN-----SEYGTTILNTIKEGKI--- 67 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~-------~~-------~~~~~~-----~~~~~~~~~~l~~~~~--- 67 (196)
-+++|.||+||||||++++|+ |+.....|++ .. +.+... .+.+.+..+....|..
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~---g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~ 105 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLA---GLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHL 105 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHh---ccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCccc
Confidence 588999999999999999999 5443333322 11 111111 1223333343333311
Q ss_pred --CC--HHHHHHHHHHHHhc---CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCc
Q 029287 68 --VP--SEVTVSLIQKEMES---SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDN 140 (196)
Q Consensus 68 --~~--~~~~~~~i~~~l~~---~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~ 140 (196)
.. ...-...+.+.++. .....-.++.++.++.|+.++++++.+.|++ ++||+|+..+.-+-.-. -
T Consensus 106 ~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~i-LLLDEPTs~LDi~~Q~e-------v 177 (258)
T COG1120 106 GLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPI-LLLDEPTSHLDIAHQIE-------V 177 (258)
T ss_pred ccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCE-EEeCCCccccCHHHHHH-------H
Confidence 11 11112234334443 2222223677888999999999999999999 88999993322211111 0
Q ss_pred HHHHHHH------HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHH
Q 029287 141 IDTVRKR------LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFE 182 (196)
Q Consensus 141 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~ 182 (196)
.+.+.+. ....-.|+.-.+..||++..++. |.+.+++++++.
T Consensus 178 l~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 178 LELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 0000000 01233345555667777544443 667788888763
No 122
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=99.38 E-value=1.2e-10 Score=81.99 Aligned_cols=76 Identities=12% Similarity=0.141 Sum_probs=48.5
Q ss_pred HHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCc---HHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhH
Q 029287 103 AFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDN---IDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDE 179 (196)
Q Consensus 103 ~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~ 179 (196)
++.......+|.+|||.++|++|.+|+.+| .|.++. .+.+++.-..+++.-.....-+....+++++|++.+.|-
T Consensus 145 ~i~~~~~v~~dgiIYLrasPetc~~Ri~~R--~R~EE~gipL~YLe~LH~~HE~WLi~~~f~~lq~vpvLVLDad~n~df 222 (244)
T KOG4235|consen 145 WILRSMDVSLDGIIYLRASPETCYKRIYLR--AREEEKGIPLKYLEALHELHESWLIKLHFPNLQAVPVLVLDADHNMDF 222 (244)
T ss_pred HHHhccccccceEEEeecChHHHHHHHHHH--hhhhhcCCcHHHHHHHHHHHHHHHHHHhhhHhhcCCeEEEecccchhH
Confidence 333344567999999999999999999999 555553 344444333333332222222234689999998876554
Q ss_pred H
Q 029287 180 I 180 (196)
Q Consensus 180 v 180 (196)
.
T Consensus 223 ~ 223 (244)
T KOG4235|consen 223 S 223 (244)
T ss_pred H
Confidence 3
No 123
>PRK12338 hypothetical protein; Provisional
Probab=99.37 E-value=5.7e-11 Score=91.22 Aligned_cols=177 Identities=15% Similarity=0.250 Sum_probs=91.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCh-------hhHHHHHH--hhcCCCC-C--------
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSE-------YGTTILNT--IKEGKIV-P-------- 69 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~-------~~~~~~~~--l~~~~~~-~-------- 69 (196)
.|++|+|.|+|||||||+++.|++.+|+.++..++.+++.+....+ +...+..+ +...... +
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~~g 82 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELICAG 82 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHHHH
Confidence 4689999999999999999999999999998778888876554211 01111111 1111111 0
Q ss_pred ----HHHHHHHHHHHHhc--CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCC--CCCCcH
Q 029287 70 ----SEVTVSLIQKEMES--SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEG--RVDDNI 141 (196)
Q Consensus 70 ----~~~~~~~i~~~l~~--~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~--~~~~~~ 141 (196)
-..+...+...+.. .++..+|++|.-....-... .......+-.++++..+.+...+|...|... |.....
T Consensus 83 f~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~-~~~~~~~~v~~~vl~~dee~h~~Rf~~R~~~~~r~~~~l 161 (319)
T PRK12338 83 FEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDI-EQFEENASIHFFILSADEEVHKERFVKRAMEIKRGGKQL 161 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhh-hhhcccCceEEEEEECCHHHHHHHHHHhhhccCCchhhh
Confidence 11122233333331 35667889997544322111 1100111222344557789999999987311 111111
Q ss_pred HHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287 142 DTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAAL 191 (196)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~ 191 (196)
..++. .......+.+. +....+.+| .+.+.++..+.+.+.+...
T Consensus 162 ~~f~~----Ir~Iq~~l~~~-A~e~~VpvI-~N~did~Tv~~ile~I~e~ 205 (319)
T PRK12338 162 EYFRE----NRIIHDHLVEQ-AREHNVPVI-KNDDIDCTVKKMLSYIREV 205 (319)
T ss_pred hChHH----HHHHHHHHHHh-HhhCCCcee-CCCcHHHHHHHHHHHHHhh
Confidence 11221 11111111222 223344444 4457888888777766543
No 124
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.37 E-value=3.9e-11 Score=87.36 Aligned_cols=159 Identities=18% Similarity=0.239 Sum_probs=81.7
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHHHh-----CCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHH--HH
Q 029287 6 GKGPFICFVLGGPGSGKGTQCAKIVKNY-----GLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSL--IQ 78 (196)
Q Consensus 6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--i~ 78 (196)
+..+.+|+|+|++||||||+++.|+..+ +..+++.+++... +.... + ............. +.
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~-~~~~~--~--------~~~~~~~~~~~~l~~~a 89 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHG-LCSDL--G--------FSDADRKENIRRVGEVA 89 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhh-hhhcC--C--------cCcccHHHHHHHHHHHH
Confidence 3467899999999999999999999876 3455665544322 11100 0 0000000111111 11
Q ss_pred HHHhcCCCCcEEEeCCCC-CHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc---CCCCCCcHHHHHHHHHHHHhc
Q 029287 79 KEMESSDSKKFLIDGFPR-SEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN---EGRVDDNIDTVRKRLQVFKAL 154 (196)
Q Consensus 79 ~~l~~~~~~~~iid~~~~-~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~---~~~~~~~~~~~~~~~~~~~~~ 154 (196)
..+. ..+..+ +..|.. ....+..+...+....-++|||++|++++.+|-. |+ ..+.+ .. . .+...
T Consensus 90 ~~~~-~~G~~V-I~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R~~-r~l~~~~~~~-~~---~----~l~~~ 158 (198)
T PRK03846 90 KLMV-DAGLVV-LTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEARDP-KGLYKKARAG-EI---R----NFTGI 158 (198)
T ss_pred HHHh-hCCCEE-EEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhcCc-hhHHHHhhcC-Cc---c----Ccccc
Confidence 1111 123344 444544 4456656655554333347999999999999921 10 00000 00 0 01111
Q ss_pred hHhHHHHHHh-cCcEEEEe-CCCCHhHHHHHHHHHHHh
Q 029287 155 NLPVINYYAR-RGKLYTIN-AVGTVDEIFEQVRAVFAA 190 (196)
Q Consensus 155 ~~~~~~~~~~-~~~~~~I~-~~~~~~~v~~~i~~~i~~ 190 (196)
.. . |.. ...-+.|+ ...+++++.++|.+.+..
T Consensus 159 r~---~-Y~~p~~ad~~Idt~~~~~~~vv~~Il~~l~~ 192 (198)
T PRK03846 159 DS---V-YEAPESPEIHLDTGEQLVTNLVEQLLDYLRQ 192 (198)
T ss_pred cc---c-CCCCCCCCEEEECCCCCHHHHHHHHHHHHHH
Confidence 11 1 231 11225677 467899998888777654
No 125
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.37 E-value=1.2e-11 Score=88.99 Aligned_cols=162 Identities=21% Similarity=0.321 Sum_probs=93.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHh--CCceechhHHHHHHHhcCC----h----hhHHHHHHhhcCCCCCHH-------
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNY--GLTHLSAGELLRREIASNS----E----YGTTILNTIKEGKIVPSE------- 71 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~--~~~~i~~~~~~~~~~~~~~----~----~~~~~~~~l~~~~~~~~~------- 71 (196)
+++|+|.||+||||+|+++.|.+.+ ++...-. .. .+...++. + ....+.+.+..|..++..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~-~T-tR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~Y 79 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVS-HT-TRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYY 79 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeee-ec-CCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCc
Confidence 3578899999999999999999886 2222111 01 11111111 1 124566666666554321
Q ss_pred -HHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh-HHHHHHHhhccCCCCCCcHHHHHHHHH
Q 029287 72 -VTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE-EEMVNRVLNRNEGRVDDNIDTVRKRLQ 149 (196)
Q Consensus 72 -~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~-~~~~~Rl~~r~~~~~~~~~~~~~~~~~ 149 (196)
...+.+...+.. +..+|+|..+.+..+... ....| ++||+..|. +.+.+|+.+| ..++.+.+++|+.
T Consensus 80 Gt~~~~i~~~~~~--~~~~ild~~~~~~~~l~~----~~~~~-~vIfi~~~s~~~l~~rl~~R----~~~~~~~i~~rl~ 148 (184)
T smart00072 80 GTSKETIRQVAEQ--GKHCLLDIDPQGVKQLRK----AQLYP-IVIFIAPPSSEELERRLRGR----GTETAERIQKRLA 148 (184)
T ss_pred ccCHHHHHHHHHc--CCeEEEEECHHHHHHHHH----hCCCc-EEEEEeCcCHHHHHHHHHhc----CCCCHHHHHHHHH
Confidence 223345555553 567888877655443322 22233 678898554 6799999877 4446677777766
Q ss_pred HHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHh
Q 029287 150 VFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAA 190 (196)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~ 190 (196)
..... ...+ .... .+|+++ ++++..+++.+.+.+
T Consensus 149 ~a~~~----~~~~-~~fd-~~I~n~-~l~~~~~~l~~~i~~ 182 (184)
T smart00072 149 AAQKE----AQEY-HLFD-YVIVND-DLEDAYEELKEILEA 182 (184)
T ss_pred HHHHH----Hhhh-ccCC-EEEECc-CHHHHHHHHHHHHHh
Confidence 43332 1122 1122 234444 788888888887754
No 126
>PHA03132 thymidine kinase; Provisional
Probab=99.36 E-value=2.3e-11 Score=99.81 Aligned_cols=142 Identities=20% Similarity=0.203 Sum_probs=78.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhH--HHHHHHhcCChhhHHHHHHhhcCC--CCC-HHHH----------
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGE--LLRREIASNSEYGTTILNTIKEGK--IVP-SEVT---------- 73 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~l~~~~--~~~-~~~~---------- 73 (196)
.++|+|+|..||||||+++.|++++|..++...+ -.+.... ...+..+++.+..+. ... ...+
T Consensus 257 ~~fIv~EGidGsGKTTlik~L~e~lg~~Vi~t~EP~~~W~~vy--~n~l~~I~~~~~r~~~g~~s~~~ella~Ql~FA~P 334 (580)
T PHA03132 257 ACFLFLEGVMGVGKTTLLNHMRGILGDNVLVFPEPMRYWTEVY--SNCLKEIYKLVKPGKHGKTSTSAKLLACQMKFATP 334 (580)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhCCceEEEeCCCCchhhcc--ccHHHHHHHHHhcccccCCCHHHHHHHHHHHHhhH
Confidence 5899999999999999999999998433322100 0011000 133444544443221 111 1111
Q ss_pred ----HHHHHHH---Hh-----cCCCCcEEEeCCCCCHHH----------------HHHHHHHh-CCCCcEEEEeecChHH
Q 029287 74 ----VSLIQKE---ME-----SSDSKKFLIDGFPRSEEN----------------RAAFERIM-GAEPDIVLFFDCPEEE 124 (196)
Q Consensus 74 ----~~~i~~~---l~-----~~~~~~~iid~~~~~~~~----------------~~~~~~~~-~~~p~~~i~ld~~~~~ 124 (196)
...+... .. ...+..+|+|+|+.+... ...+...+ ...||++||||+++++
T Consensus 335 fl~~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~ls~~e~~~lL~~~~~~~PDLiIyLdv~pe~ 414 (580)
T PHA03132 335 FRALATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGMLSFSHFIQLLSTFRAHEGDVIVLLKLNSEE 414 (580)
T ss_pred HHHHHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhccccccCCHHHHHHHHHHhcccCCCEEEEEeCCHHH
Confidence 0111111 11 123467889998865321 01111112 2469999999999999
Q ss_pred HHHHHhhccCCCCCC---cHHHHHHHHHHHHhc
Q 029287 125 MVNRVLNRNEGRVDD---NIDTVRKRLQVFKAL 154 (196)
Q Consensus 125 ~~~Rl~~r~~~~~~~---~~~~~~~~~~~~~~~ 154 (196)
+.+|+.+|. |..+ +.+.+++..+.|...
T Consensus 415 alkRIkkRg--R~~E~~IdleYL~rLre~Y~~l 445 (580)
T PHA03132 415 NLRRVKKRG--RKEEKGINLTYLKELNWAYHAV 445 (580)
T ss_pred HHHHHHhcC--chhhhcCCHHHHHHHHHHHHHH
Confidence 999999983 3322 455666555555443
No 127
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.36 E-value=1.2e-12 Score=87.68 Aligned_cols=34 Identities=29% Similarity=0.616 Sum_probs=31.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCceechhHHH
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL 44 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~ 44 (196)
+|+|.|+|||||||+++.|++.+|+.+++.|+++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~ 34 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLI 34 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceE
Confidence 5889999999999999999999999999999853
No 128
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.35 E-value=3.5e-12 Score=90.49 Aligned_cols=163 Identities=18% Similarity=0.247 Sum_probs=94.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH-------------HHHHHhcCC---hh--hHHHHHHhhcCCCC---
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL-------------LRREIASNS---EY--GTTILNTIKEGKIV--- 68 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~-------------~~~~~~~~~---~~--~~~~~~~l~~~~~~--- 68 (196)
-+++|.|++||||||++++|+ .+.+++.|.+ +++.+...+ .. ..+.++++..-..+
T Consensus 29 ei~GlLG~NGAGKTT~LRmia---tlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l 105 (245)
T COG4555 29 EITGLLGENGAGKTTLLRMIA---TLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGL 105 (245)
T ss_pred eEEEEEcCCCCCchhHHHHHH---HhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhh
Confidence 589999999999999999999 5554444433 223222111 01 11122333221111
Q ss_pred C---HHHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh---HHHHHHHhhccCCCCCCcHH
Q 029287 69 P---SEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE---EEMVNRVLNRNEGRVDDNID 142 (196)
Q Consensus 69 ~---~~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~---~~~~~Rl~~r~~~~~~~~~~ 142 (196)
. -......+.+.+...++-.--+.+|+.+++|++.+++++-.+|++ ++||+|. +....|.... -..
T Consensus 106 ~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i-~vlDEP~sGLDi~~~r~~~d-------fi~ 177 (245)
T COG4555 106 SRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSI-LVLDEPTSGLDIRTRRKFHD-------FIK 177 (245)
T ss_pred hhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCe-EEEcCCCCCccHHHHHHHHH-------HHH
Confidence 1 122233344444433321122456899999999999999999999 7799998 3333333221 001
Q ss_pred HHH--HHHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287 143 TVR--KRLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ 183 (196)
Q Consensus 143 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~ 183 (196)
..+ .+...|-+|..+.++..|+...++. +...++++.+...
T Consensus 178 q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 178 QLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred HhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 111 1234788899999999999655553 5566787777654
No 129
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.34 E-value=9.3e-12 Score=91.39 Aligned_cols=162 Identities=24% Similarity=0.283 Sum_probs=92.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh-----hhHHHHHHhhc---CCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE-----YGTTILNTIKE---GKI 67 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~-----~~~~~~~~l~~---~~~ 67 (196)
-++++.|||||||||+++++- ++...+.|.+ +|+.+.+.-+ ...++.+++.. -..
T Consensus 28 ef~vliGpSGsGKTTtLkMIN---rLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~ 104 (309)
T COG1125 28 EFLVLIGPSGSGKTTTLKMIN---RLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLG 104 (309)
T ss_pred eEEEEECCCCCcHHHHHHHHh---cccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcC
Confidence 467779999999999999998 4444444433 2333322211 00111222211 111
Q ss_pred CCHHHHHHHHHHHHhcCCCCc-EEEeCCCC----CHHHHHHHHHHhCCCCcEEEEeecChHH----HHHHHhhccCCCCC
Q 029287 68 VPSEVTVSLIQKEMESSDSKK-FLIDGFPR----SEENRAAFERIMGAEPDIVLFFDCPEEE----MVNRVLNRNEGRVD 138 (196)
Q Consensus 68 ~~~~~~~~~i~~~l~~~~~~~-~iid~~~~----~~~~~~~~~~~~~~~p~~~i~ld~~~~~----~~~Rl~~r~~~~~~ 138 (196)
.......+.+.+.+...+... -..++||+ ++.|++.+++++...|.+ +++|+|+.- ....+..
T Consensus 105 w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~i-lLMDEPFgALDpI~R~~lQ~------- 176 (309)
T COG1125 105 WDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPI-LLMDEPFGALDPITRKQLQE------- 176 (309)
T ss_pred CCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCe-EeecCCccccChhhHHHHHH-------
Confidence 123444455556666544432 24888886 589999999999999999 889999922 1111211
Q ss_pred CcHHHHHHHH---HHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287 139 DNIDTVRKRL---QVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ 183 (196)
Q Consensus 139 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~ 183 (196)
....+++.+ -.|-+|+...+...+++..++. |...++++++...
T Consensus 177 -e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~ 226 (309)
T COG1125 177 -EIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 (309)
T ss_pred -HHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence 112222221 2566777777777777544443 4445677777544
No 130
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=99.34 E-value=2.1e-10 Score=85.07 Aligned_cols=172 Identities=13% Similarity=0.261 Sum_probs=94.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceec---hhHHHHHHHhcC-------ChhhHH---HHHHhhcC-CCCCH---
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS---AGELLRREIASN-------SEYGTT---ILNTIKEG-KIVPS--- 70 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~---~~~~~~~~~~~~-------~~~~~~---~~~~l~~~-~~~~~--- 70 (196)
.+.+|+++|+.|||||++++.|++.+|+.++. .|+++......+ .+.... +...-... .....
T Consensus 70 nSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~~Q 149 (393)
T KOG3877|consen 70 NSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAAMQ 149 (393)
T ss_pred cceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHHHHH
Confidence 45799999999999999999999999988764 444432211110 000000 11100000 00000
Q ss_pred --------HHHHHHHHHHHhcCCCCcEEEeCCCCCHH---------------H--------HHHHHHHhCCCCcEEEEee
Q 029287 71 --------EVTVSLIQKEMESSDSKKFLIDGFPRSEE---------------N--------RAAFERIMGAEPDIVLFFD 119 (196)
Q Consensus 71 --------~~~~~~i~~~l~~~~~~~~iid~~~~~~~---------------~--------~~~~~~~~~~~p~~~i~ld 119 (196)
..-...+...+. .++++|+++.|.+-= . ...+.+ ...|.+|||||
T Consensus 150 ~r~y~~R~~QY~dAL~HiL~--TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~--ll~PHLViYld 225 (393)
T KOG3877|consen 150 DRIYNCRFDQYLDALAHILN--TGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQ--LLWPHLVIYLD 225 (393)
T ss_pred HHHHHhHHHHHHHHHHHHHh--cCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhh--hcCccEEEEEc
Confidence 011222333333 467899999887610 0 011111 35899999999
Q ss_pred cChHHHHHHHhhccCCCCCC--cHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEe--CCCCHhHHHHHHHH
Q 029287 120 CPEEEMVNRVLNRNEGRVDD--NIDTVRKRLQVFKALNLPVINYYARRGKLYTIN--AVGTVDEIFEQVRA 186 (196)
Q Consensus 120 ~~~~~~~~Rl~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~--~~~~~~~v~~~i~~ 186 (196)
+|...+.+++.+|+...... +...++.--+.|... ....+++++.++.-| ..++.+.|.++|+.
T Consensus 226 ~Pv~~v~~~Ik~rg~~~Eik~~s~aYL~diE~~YK~~---fL~e~s~h~eiL~Ydwt~~gdt~~VVEDIEr 293 (393)
T KOG3877|consen 226 TPVNKVLENIKRRGNTDEIKTVSEAYLKDIEESYKDS---FLREYSNHSEILAYDWTKPGDTDAVVEDIER 293 (393)
T ss_pred CCcHHHHHHHHhcCCCcceeehhHHHHHHHHHHHHHH---HHHHHhhhhheeeeecccCCCchhHHHhhhh
Confidence 99999999999884111111 112222222344433 244556677777655 34566777777654
No 131
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.33 E-value=3.7e-11 Score=87.43 Aligned_cols=34 Identities=29% Similarity=0.452 Sum_probs=27.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh---CCceechhHHH
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNY---GLTHLSAGELL 44 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~---~~~~i~~~~~~ 44 (196)
+|+|.|++||||||+++.|+..+ +..+++.++++
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccc
Confidence 58999999999999999999887 35566666554
No 132
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.33 E-value=4.3e-11 Score=97.74 Aligned_cols=109 Identities=21% Similarity=0.331 Sum_probs=65.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhh-cCCCCCHHHHHHHHHHHHhcCCCCc
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIK-EGKIVPSEVTVSLIQKEMESSDSKK 88 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~i~~~l~~~~~~~ 88 (196)
|.|+|+|++||||||+++.|++.+|+.+++.|+.+.+. .+.. +.+... .|...+.....+.+.+.... ...
T Consensus 1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~--~g~~----i~~i~~~~Ge~~fr~~E~~~l~~l~~~--~~~ 72 (488)
T PRK13951 1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERR--EGRS----VRRIFEEDGEEYFRLKEKELLRELVER--DNV 72 (488)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHH--cCCC----HHHHHHHhhhHHHHHHHHHHHHHHhhc--CCE
Confidence 36889999999999999999999999999999887663 1111 222221 12222222223333333221 222
Q ss_pred EEEeC--CCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhc
Q 029287 89 FLIDG--FPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNR 132 (196)
Q Consensus 89 ~iid~--~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r 132 (196)
++..| .......+..+. ...+|||++|++++.+|+..+
T Consensus 73 Vis~Gggvv~~~~~r~~l~------~~~vI~L~as~e~l~~Rl~~~ 112 (488)
T PRK13951 73 VVATGGGVVIDPENRELLK------KEKTLFLYAPPEVLMERVTTE 112 (488)
T ss_pred EEECCCccccChHHHHHHh------cCeEEEEECCHHHHHHHhccC
Confidence 22222 122223333332 245799999999999999765
No 133
>PRK07429 phosphoribulokinase; Provisional
Probab=99.33 E-value=3.6e-11 Score=93.39 Aligned_cols=138 Identities=16% Similarity=0.248 Sum_probs=71.5
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHHHhC---CceechhHHHH------HHHhcC--Ch------hhHHHHHHhhcCCCC
Q 029287 6 GKGPFICFVLGGPGSGKGTQCAKIVKNYG---LTHLSAGELLR------REIASN--SE------YGTTILNTIKEGKIV 68 (196)
Q Consensus 6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~---~~~i~~~~~~~------~~~~~~--~~------~~~~~~~~l~~~~~~ 68 (196)
..++++|+|.|++||||||+++.|++.++ ...+..|++.. +..... .+ ......+.+..+..+
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~I 84 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQPI 84 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCce
Confidence 45789999999999999999999999886 44566665531 000000 00 000011122222211
Q ss_pred CHHHHHHH---HHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHH
Q 029287 69 PSEVTVSL---IQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVR 145 (196)
Q Consensus 69 ~~~~~~~~---i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~ 145 (196)
........ ........+...+|++|...- +...+....|++|||++|.++..+|..+|...+...+.+.+.
T Consensus 85 ~~P~yd~~~g~~~~~~~i~p~~iVIvEG~~~l------~~~~lr~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~ 158 (327)
T PRK07429 85 LKPIYNHETGTFDPPEYIEPNKIVVVEGLHPL------YDERVRELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVL 158 (327)
T ss_pred ecceeecCCCCcCCcEecCCCcEEEEechhhc------CcHhHHhhCCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 10000000 000000112356778885311 111122257999999999999988777764332233445555
Q ss_pred HHHH
Q 029287 146 KRLQ 149 (196)
Q Consensus 146 ~~~~ 149 (196)
+++.
T Consensus 159 ~~i~ 162 (327)
T PRK07429 159 AEIE 162 (327)
T ss_pred HHHH
Confidence 4443
No 134
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.32 E-value=1.8e-10 Score=84.28 Aligned_cols=165 Identities=15% Similarity=0.208 Sum_probs=87.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCC----h----hhHHHHHHhhcCCCCC-----HH---H
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNS----E----YGTTILNTIKEGKIVP-----SE---V 72 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~----~----~~~~~~~~l~~~~~~~-----~~---~ 72 (196)
..+|+|.||+||||||+++.|++.++..........+. +..+. + ....+...+..+.... .. .
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~-p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 83 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRA-PRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYGT 83 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccC-CCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccccC
Confidence 46889999999999999999998875222221111111 01110 0 1122333332222211 00 0
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHH
Q 029287 73 TVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFK 152 (196)
Q Consensus 73 ~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~ 152 (196)
....+...+.. +..+|+|.-+ .....+...+. .+-.+++..++.+.+.+|+..| ..++.+.+++|+..+.
T Consensus 84 ~~~~i~~~l~~--g~~vi~dl~~---~g~~~l~~~~~-~~~~I~i~~~s~~~l~~Rl~~R----~~~~~~~i~~rl~~~~ 153 (205)
T PRK00300 84 PRSPVEEALAA--GKDVLLEIDW---QGARQVKKKMP-DAVSIFILPPSLEELERRLRGR----GTDSEEVIARRLAKAR 153 (205)
T ss_pred cHHHHHHHHHc--CCeEEEeCCH---HHHHHHHHhCC-CcEEEEEECcCHHHHHHHHHhc----CCCCHHHHHHHHHHHH
Confidence 12334444443 4455666433 22223333332 3333344456778999999988 3456778888877665
Q ss_pred hchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287 153 ALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAAL 191 (196)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~ 191 (196)
.... .+. ....+++ + .+++++.+++.+.+...
T Consensus 154 ~~~~----~~~-~~d~vi~-n-~~~e~~~~~l~~il~~~ 185 (205)
T PRK00300 154 EEIA----HAS-EYDYVIV-N-DDLDTALEELKAIIRAE 185 (205)
T ss_pred HHHH----hHH-hCCEEEE-C-CCHHHHHHHHHHHHHHH
Confidence 4422 222 2234334 3 37999999988877653
No 135
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.32 E-value=1.3e-10 Score=83.62 Aligned_cols=111 Identities=18% Similarity=0.269 Sum_probs=63.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHh---C--CceechhHHHHHHHhcCChhh-HHHHHHhhcCCCCCHHHHHHHHHHH
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNY---G--LTHLSAGELLRREIASNSEYG-TTILNTIKEGKIVPSEVTVSLIQKE 80 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~---~--~~~i~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~i~~~ 80 (196)
..+.+++|.|++||||||+++.|...+ | ..+++.+. +++.+....... ....... ....... ..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~-~r~~l~~~~~~~~~~~~~~~--------~~~~~~~-~~ 85 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDN-VRHGLNKDLGFSEEDRKENI--------RRIGEVA-KL 85 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChH-HHhhhccccCCCHHHHHHHH--------HHHHHHH-HH
Confidence 346899999999999999999999887 2 34455443 333222111000 0000000 0011111 11
Q ss_pred HhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHH
Q 029287 81 MESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNR 128 (196)
Q Consensus 81 l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~R 128 (196)
+ ...+..+|++.......++..+.......+-.++|+++|.+.+.+|
T Consensus 86 ~-~~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R 132 (184)
T TIGR00455 86 F-VRNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQR 132 (184)
T ss_pred H-HcCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHh
Confidence 2 2345677788765555555555544433355679999999999988
No 136
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.31 E-value=9.3e-12 Score=90.36 Aligned_cols=165 Identities=18% Similarity=0.249 Sum_probs=87.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCC----------------------
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIV---------------------- 68 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------------- 68 (196)
.++|+|++||||||+++.|. |..-++.|+++........-.+..++++.+.-..+
T Consensus 32 ~VaiIG~SGaGKSTLLR~ln---gl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~ 108 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLN---GLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLG 108 (258)
T ss_pred EEEEECCCCCcHHHHHHHHh---cccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcc
Confidence 67889999999999999999 66666665553222111111122222222111110
Q ss_pred -----------CHHHHHHHHHHHHhc---CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccC
Q 029287 69 -----------PSEVTVSLIQKEMES---SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNE 134 (196)
Q Consensus 69 -----------~~~~~~~~i~~~l~~---~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~ 134 (196)
+...-.....+.++. .+....-.+.++.++.|++++++++.+.|.+ |+-|+|...+.-.-.+.
T Consensus 109 ~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pki-ILADEPvasLDp~~a~~-- 185 (258)
T COG3638 109 YTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKI-ILADEPVASLDPESAKK-- 185 (258)
T ss_pred cchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCE-EecCCcccccChhhHHH--
Confidence 111112222333332 1222233677888999999999999999999 77999984433322221
Q ss_pred CCCCCcHHHHHHH---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287 135 GRVDDNIDTVRKR---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ 183 (196)
Q Consensus 135 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~ 183 (196)
..+....+.++ .....-|...++..|+++..-+. |..+++..++-++
T Consensus 186 --Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~~~ 238 (258)
T COG3638 186 --VMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTDE 238 (258)
T ss_pred --HHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhhHH
Confidence 00001111110 01233456677888887533332 5566777776544
No 137
>PRK07667 uridine kinase; Provisional
Probab=99.31 E-value=1e-11 Score=89.96 Aligned_cols=129 Identities=16% Similarity=0.225 Sum_probs=71.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhC-----CceechhHHHHHHH----hcCChh-------------hHHHHHHhhcC
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYG-----LTHLSAGELLRREI----ASNSEY-------------GTTILNTIKEG 65 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~-----~~~i~~~~~~~~~~----~~~~~~-------------~~~~~~~l~~~ 65 (196)
.+++|+|.|++||||||+++.|++.++ ...++.++++.... ....+. ...+...+..+
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~~ 95 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQNE 95 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcCC
Confidence 458999999999999999999999873 44677777653221 111100 00111122222
Q ss_pred CCCC----HHHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcH
Q 029287 66 KIVP----SEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNI 141 (196)
Q Consensus 66 ~~~~----~~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~ 141 (196)
..+. +..................+|++|.... ...+....|.+|++++|++.+.+|+.+| ...+.
T Consensus 96 ~~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l~-------~~~~~~~~d~~v~V~~~~~~~~~R~~~r----~~~~~ 164 (193)
T PRK07667 96 TKLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFLQ-------RKEWRDFFHYMVYLDCPRETRFLRESEE----TQKNL 164 (193)
T ss_pred CeEEEeeeccccccccccceecCCCCEEEEEehhhh-------hhhHHhhceEEEEEECCHHHHHHHHhcc----cHhHH
Confidence 1111 1111111111111222456778876421 1122235799999999999999999987 33344
Q ss_pred HHHHHH
Q 029287 142 DTVRKR 147 (196)
Q Consensus 142 ~~~~~~ 147 (196)
+.++++
T Consensus 165 ~~~~~r 170 (193)
T PRK07667 165 SKFKNR 170 (193)
T ss_pred HHHHHH
Confidence 444443
No 138
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.31 E-value=3.1e-12 Score=108.08 Aligned_cols=110 Identities=23% Similarity=0.327 Sum_probs=70.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCChh----hHHHHHHhhcCCCCCH-
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSEY----GTTILNTIKEGKIVPS- 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~~----~~~~~~~l~~~~~~~~- 70 (196)
-+++|+|.+||||||+++.|. |+.....|.+ +|+.+...++. ...+++++..+.+...
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~---gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~ 576 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLL---GLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATD 576 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCH
Confidence 478999999999999999999 5444433322 45555554443 3446788877666543
Q ss_pred HHHHHHH-----HHHHhcC--CCCcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 71 EVTVSLI-----QKEMESS--DSKKFLIDG---FPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 71 ~~~~~~i-----~~~l~~~--~~~~~iid~---~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
+...+.. .+.+..- +.+..|-++ ++.+++|++++++++..+|.+ ++||+++.
T Consensus 577 e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~I-LlLDEaTS 638 (709)
T COG2274 577 EEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKI-LLLDEATS 638 (709)
T ss_pred HHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCE-EEEeCccc
Confidence 3222211 1111111 123333332 667799999999999999998 77999983
No 139
>PLN02348 phosphoribulokinase
Probab=99.30 E-value=2.8e-11 Score=94.95 Aligned_cols=29 Identities=21% Similarity=0.417 Sum_probs=26.6
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHHHhC
Q 029287 6 GKGPFICFVLGGPGSGKGTQCAKIVKNYG 34 (196)
Q Consensus 6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~ 34 (196)
...+++|+|.|++||||||+++.|++.+|
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45679999999999999999999999986
No 140
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.29 E-value=4.4e-11 Score=85.72 Aligned_cols=161 Identities=14% Similarity=0.194 Sum_probs=85.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCh--------hhHHHHHHhhcCCCCCH--------HHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSE--------YGTTILNTIKEGKIVPS--------EVT 73 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~--------~~~ 73 (196)
.+|+|.||+||||||+++.|++.++..++......+.. ..+.. ....+.+.+..+..+.. ...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 80 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKP-RPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTP 80 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCC-CCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCc
Confidence 47899999999999999999987644333322222211 11100 01123333333322211 111
Q ss_pred HHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHh
Q 029287 74 VSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKA 153 (196)
Q Consensus 74 ~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~ 153 (196)
...+...+.. +..+|+|.-+.+ ...+...+ ..+..++++..+.+.+.+|+..| ..+..+.+++++..+..
T Consensus 81 ~~~i~~~~~~--g~~vi~d~~~~~---~~~~~~~~-~~~~~i~~~~~~~e~~~~Rl~~r----~~~~~~~i~~rl~~~~~ 150 (180)
T TIGR03263 81 KSPVEEALAA--GKDVLLEIDVQG---ARQVKKKF-PDAVSIFILPPSLEELERRLRKR----GTDSEEVIERRLAKAKK 150 (180)
T ss_pred HHHHHHHHHC--CCeEEEECCHHH---HHHHHHhC-CCcEEEEEECCCHHHHHHHHHHc----CCCCHHHHHHHHHHHHH
Confidence 3345555553 555677743222 22223333 23445455566678999999987 33456677777765543
Q ss_pred chHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHH
Q 029287 154 LNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVF 188 (196)
Q Consensus 154 ~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i 188 (196)
.. + +.....+. |+++ +.++..+++.+.+
T Consensus 151 ~~----~-~~~~~d~~-i~n~-~~~~~~~~l~~~~ 178 (180)
T TIGR03263 151 EI----A-HADEFDYV-IVND-DLEKAVEELKSII 178 (180)
T ss_pred HH----h-ccccCcEE-EECC-CHHHHHHHHHHHH
Confidence 21 1 12223333 4444 7889988887765
No 141
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.29 E-value=1.3e-10 Score=98.51 Aligned_cols=173 Identities=16% Similarity=0.180 Sum_probs=93.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH----HhcCC--hhhHHHHHHhhc-------------CCCCC
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE----IASNS--EYGTTILNTIKE-------------GKIVP 69 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~----~~~~~--~~~~~~~~~l~~-------------~~~~~ 69 (196)
.++|+|.||+||||||+++.|++++|+.+++.|.++|.. +..+- .....+.+.+.. +..+.
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGVALDDEAAIAALARGLPVRFEGDRIWLGGEDVT 521 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHhcCCeeecCCeEEECCeEch
Confidence 468999999999999999999999999999999998764 11111 111112221111 11111
Q ss_pred HH-----------------HHHHHHHHHHh-cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhh
Q 029287 70 SE-----------------VTVSLIQKEME-SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLN 131 (196)
Q Consensus 70 ~~-----------------~~~~~i~~~l~-~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~ 131 (196)
.. .+...+..... .....++|+||=-- ..-+.++.++-|||+++++++.+|..+
T Consensus 522 ~~i~~~~v~~~~s~~a~~~~vr~~l~~~qr~~~~~~~~v~eGRdi--------gtvv~p~a~~kifl~a~~~~Ra~Rr~~ 593 (661)
T PRK11860 522 DAIRTEAAGMGASRVSALPAVRAALLALQRSFRRLPGLVADGRDM--------GTVIFPDAALKVFLTASAEARAERRYK 593 (661)
T ss_pred hhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHhhCCCEEEECCCC--------ccEECCCCCeEEEEECChhHHHHHHHH
Confidence 10 00111111111 11233566776221 111334678999999999999999886
Q ss_pred ccCCCC-CCcHHHHHHHHH--HHHhchHhHHHHHHhcCcEEEEeC-CCCHhHHHHHHHHHHHh
Q 029287 132 RNEGRV-DDNIDTVRKRLQ--VFKALNLPVINYYARRGKLYTINA-VGTVDEIFEQVRAVFAA 190 (196)
Q Consensus 132 r~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~I~~-~~~~~~v~~~i~~~i~~ 190 (196)
...... ..+.+.+.+.+. .+....+... -+.....-++||+ ..+++++.+.|.+.+++
T Consensus 594 ~~~~~~~~~~~~~~~~~~~~Rd~~d~~R~~~-pl~~~~da~~idts~~~~~~v~~~i~~~i~~ 655 (661)
T PRK11860 594 QLISKGISANIADLLADLEARDARDTQRSVA-PLKPAQDALLLDNSDLTIEQAVAQVLDWWQE 655 (661)
T ss_pred HHHhCCCCCCHHHHHHHHHHHhHHhhcCCCC-CCccCCCEEEEECCCCCHHHHHHHHHHHHHh
Confidence 421111 112322222111 1111111111 0111234566775 56999999999888765
No 142
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.29 E-value=1.8e-12 Score=96.29 Aligned_cols=161 Identities=19% Similarity=0.300 Sum_probs=96.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH------------------HHHHhcCChhhHH-----HHHHhhc
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL------------------RREIASNSEYGTT-----ILNTIKE 64 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~------------------~~~~~~~~~~~~~-----~~~~l~~ 64 (196)
.+-+.+|+|+|||||||+.++++ |....+.|.+. ++.+.+..+.... .+.++..
T Consensus 23 ~~GvTAlFG~SGsGKTslin~Ia---GL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~Y 99 (352)
T COG4148 23 ARGITALFGPSGSGKTSLINMIA---GLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRY 99 (352)
T ss_pred CCceEEEecCCCCChhhHHHHHh---ccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhh
Confidence 34689999999999999999999 88777665542 2222222222222 2333333
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCcEEEeCCCC----CHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCc
Q 029287 65 GKIVPSEVTVSLIQKEMESSDSKKFLIDGFPR----SEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDN 140 (196)
Q Consensus 65 ~~~~~~~~~~~~i~~~l~~~~~~~~iid~~~~----~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~ 140 (196)
|.........+.+-..+.. . -++++||. +.+|++++.+++...|++ +++|+|...+..-.++. -
T Consensus 100 G~~~~~~~~fd~iv~lLGI---~-hLL~R~P~~LSGGEkQRVAIGRALLt~P~L-LLmDEPLaSLD~~RK~E-------i 167 (352)
T COG4148 100 GMWKSMRAQFDQLVALLGI---E-HLLDRYPGTLSGGEKQRVAIGRALLTAPEL-LLMDEPLASLDLPRKRE-------I 167 (352)
T ss_pred hhcccchHhHHHHHHHhCc---H-HHHhhCCCccCcchhhHHHHHHHHhcCCCe-eeecCchhhcccchhhH-------H
Confidence 3322222222333333332 2 24777775 489999999999999999 88999985543321111 1
Q ss_pred HHHHHHH---H---HHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287 141 IDTVRKR---L---QVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ 183 (196)
Q Consensus 141 ~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~ 183 (196)
..+++.. . ..|-+|....+...++...++. |.+.++.+++++.
T Consensus 168 lpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 168 LPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred HHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence 1111111 1 1577777777777777544443 6677888888765
No 143
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.29 E-value=4.4e-12 Score=102.80 Aligned_cols=171 Identities=20% Similarity=0.307 Sum_probs=99.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHH----------------hcC-----------ChhhHHHHHHh
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREI----------------ASN-----------SEYGTTILNTI 62 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~----------------~~~-----------~~~~~~~~~~l 62 (196)
-+++|.|.|||||||+++.|+ |+...+.|.+..... ... ...+..+.+.+
T Consensus 318 E~lglVGeSGsGKSTlar~i~---gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL 394 (539)
T COG1123 318 ETLGLVGESGSGKSTLARILA---GLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPL 394 (539)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHH
Confidence 378999999999999999999 666554443322110 000 01122233333
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCCCcEEEeCCCC----CHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCC
Q 029287 63 KEGKIVPSEVTVSLIQKEMESSDSKKFLIDGFPR----SEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVD 138 (196)
Q Consensus 63 ~~~~~~~~~~~~~~i~~~l~~~~~~~~iid~~~~----~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~ 138 (196)
..............+.+.++..+-..-++++||+ ++.|+.++++++...|.+ |++|+|...+.--.... .-
T Consensus 395 ~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~l-li~DEp~SaLDvsvqa~----Vl 469 (539)
T COG1123 395 RIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKL-LILDEPVSALDVSVQAQ----VL 469 (539)
T ss_pred hhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCE-EEecCCccccCHHHHHH----HH
Confidence 3222222222223344444443332224777775 599999999999999999 77999983222211111 00
Q ss_pred CcHHHHHHHH---HHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHHHHHHH
Q 029287 139 DNIDTVRKRL---QVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQVRAVF 188 (196)
Q Consensus 139 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~i~~~i 188 (196)
+-...+++++ -.|.+|+.....++|++..++. |...++.+++++...+.+
T Consensus 470 nLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Y 525 (539)
T COG1123 470 NLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPY 525 (539)
T ss_pred HHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChH
Confidence 0111111211 2688999999999999766664 666678888887654433
No 144
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.28 E-value=1.4e-12 Score=96.86 Aligned_cols=152 Identities=20% Similarity=0.330 Sum_probs=96.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF 89 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~ 89 (196)
-+++|.|.|||||||+++.+. ++...+.|.++.+... +.. .......+.+.+.+...+...-
T Consensus 40 e~~glVGESG~GKSTlgr~i~---~L~~pt~G~i~f~g~~--------i~~-------~~~~~~~~~v~elL~~Vgl~~~ 101 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLIL---GLEEPTSGEILFEGKD--------ITK-------LSKEERRERVLELLEKVGLPEE 101 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHH---cCcCCCCceEEEcCcc--------hhh-------cchhHHHHHHHHHHHHhCCCHH
Confidence 578999999999999999999 7777777776544211 000 0022334455556665444333
Q ss_pred EEeCCCC----CHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHH---HHHHHhchHhHHHHH
Q 029287 90 LIDGFPR----SEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKR---LQVFKALNLPVINYY 162 (196)
Q Consensus 90 iid~~~~----~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 162 (196)
.+.+||+ ++.|+..+++++...|++ ++.|+|...+.-=+... .-.-...+++. .-.|.+|+...+.++
T Consensus 102 ~~~ryPhelSGGQrQRi~IARALal~P~l-iV~DEpvSaLDvSiqaq----IlnLL~dlq~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 102 FLYRYPHELSGGQRQRIGIARALALNPKL-IVADEPVSALDVSVQAQ----ILNLLKDLQEELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred HhhcCCcccCchhhhhHHHHHHHhhCCcE-EEecCchhhcchhHHHH----HHHHHHHHHHHhCCeEEEEEEEHHhhhhh
Confidence 4677775 589999999999999999 66888873322222111 00001111111 126788999999999
Q ss_pred HhcCcEEE---EeCCCCHhHHHHHH
Q 029287 163 ARRGKLYT---INAVGTVDEIFEQV 184 (196)
Q Consensus 163 ~~~~~~~~---I~~~~~~~~v~~~i 184 (196)
++...++. |...++.++++..-
T Consensus 177 sdri~VMy~G~iVE~g~~~~~~~~p 201 (268)
T COG4608 177 SDRIAVMYLGKIVEIGPTEEVFSNP 201 (268)
T ss_pred cccEEEEecCceeEecCHHHHhhCC
Confidence 98765554 66667778877653
No 145
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.27 E-value=1.6e-11 Score=92.76 Aligned_cols=165 Identities=23% Similarity=0.317 Sum_probs=97.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH-------H-----------HHHHhcCChh-----hHHHHHHhhcCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL-------L-----------RREIASNSEY-----GTTILNTIKEGK 66 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~-------~-----------~~~~~~~~~~-----~~~~~~~l~~~~ 66 (196)
-+++|.|.|||||||+.+++- ++.-++.|.+ . ++.+....+. ..++.++...|.
T Consensus 55 eIfViMGLSGSGKSTLvR~~N---rLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGL 131 (386)
T COG4175 55 EIFVIMGLSGSGKSTLVRLLN---RLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGL 131 (386)
T ss_pred eEEEEEecCCCCHHHHHHHHh---ccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcce
Confidence 478899999999999999998 4443333322 1 1112222221 122333333332
Q ss_pred ---CCCHHHHHHHHHHHHhcCCCCcEEEeCCC----CCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCC
Q 029287 67 ---IVPSEVTVSLIQKEMESSDSKKFLIDGFP----RSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDD 139 (196)
Q Consensus 67 ---~~~~~~~~~~i~~~l~~~~~~~~iid~~~----~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~ 139 (196)
-++.....+...+.++.....+| -+.|| .+++|++.+++++...||+ +++|+++.-+.-=++.. .++
T Consensus 132 ev~Gv~~~er~~~a~~~l~~VgL~~~-~~~yp~eLSGGMqQRVGLARAla~~~~I-lLMDEaFSALDPLIR~~----mQd 205 (386)
T COG4175 132 EVQGVPKAEREERALEALELVGLEGY-ADKYPNELSGGMQQRVGLARALANDPDI-LLMDEAFSALDPLIRTE----MQD 205 (386)
T ss_pred eecCCCHHHHHHHHHHHHHHcCchhh-hhcCcccccchHHHHHHHHHHHccCCCE-EEecCchhhcChHHHHH----HHH
Confidence 23455666677777776555555 44444 5699999999999999999 88999994332222211 111
Q ss_pred cHHHHHH---HHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287 140 NIDTVRK---RLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ 183 (196)
Q Consensus 140 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~ 183 (196)
..-.++. +...|.+|+...+..+-++..++. |...++++|+...
T Consensus 206 eLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~ 255 (386)
T COG4175 206 ELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLN 255 (386)
T ss_pred HHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcC
Confidence 1222222 234577787777766666544443 5567788888643
No 146
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.27 E-value=2.8e-11 Score=86.74 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=30.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh-CCceechhHHHH
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNY-GLTHLSAGELLR 45 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~-~~~~i~~~~~~~ 45 (196)
+|+|.|++||||||+++.|++.+ +..+++.|+++.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~ 36 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFK 36 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccC
Confidence 58899999999999999999998 688888887754
No 147
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=99.26 E-value=1.1e-10 Score=78.84 Aligned_cols=106 Identities=25% Similarity=0.375 Sum_probs=53.0
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcC-ChhhHHHHHHhhcCCCCCHHHH---HHHHHHHHh-cCCC
Q 029287 12 CFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASN-SEYGTTILNTIKEGKIVPSEVT---VSLIQKEME-SSDS 86 (196)
Q Consensus 12 i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~---~~~i~~~l~-~~~~ 86 (196)
|+|.|++||||||+++.|++.++ ..+....... ......-............... ...+..... ...+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLG-------DIIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIRRMNKG 73 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC-------HHHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CEEECCCCCCHHHHHHHHHHHHC-------cHHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhcccccC
Confidence 68899999999999999999972 2222211111 1000000000111122222221 222222221 2345
Q ss_pred CcEEEeCCCCCHHHHHHHHHHhCCCCcEE-EEeecChHHHHHHHhhc
Q 029287 87 KKFLIDGFPRSEENRAAFERIMGAEPDIV-LFFDCPEEEMVNRVLNR 132 (196)
Q Consensus 87 ~~~iid~~~~~~~~~~~~~~~~~~~p~~~-i~ld~~~~~~~~Rl~~r 132 (196)
..+|+|+...... ........ |+|+||++++.+|+.+|
T Consensus 74 ~~~iid~~~~~~~--------~~~~~~~~~i~L~~~~e~~~~R~~~R 112 (129)
T PF13238_consen 74 RNIIIDGILSNLE--------LERLFDIKFIFLDCSPEELRKRLKKR 112 (129)
T ss_dssp SCEEEEESSEEEC--------ETTEEEESSEEEE--HHHHHHHHHCT
T ss_pred CcEEEecccchhc--------ccccceeeEEEEECCHHHHHHHHHhC
Confidence 6778887652110 00011222 99999999999999998
No 148
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.26 E-value=2.2e-11 Score=93.67 Aligned_cols=109 Identities=21% Similarity=0.264 Sum_probs=68.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCCh-----hhHHHHHHhhcC---CCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNSE-----YGTTILNTIKEG---KIV 68 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~~-----~~~~~~~~l~~~---~~~ 68 (196)
-+++|.||+||||||+.++|+ |....+.|.+. ++.+...++ ...+.++++..- ...
T Consensus 32 ei~gllG~NGAGKTTllk~l~---gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~ 108 (293)
T COG1131 32 EIFGLLGPNGAGKTTLLKILA---GLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGL 108 (293)
T ss_pred eEEEEECCCCCCHHHHHHHHh---CCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCC
Confidence 589999999999999999999 77666555432 111111111 112223333221 111
Q ss_pred ---CHHHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 69 ---PSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 69 ---~~~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
........+.+.+........-+..|+.+++|++.++.++...|++ ++||+|+
T Consensus 109 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~l-liLDEPt 164 (293)
T COG1131 109 SKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPEL-LILDEPT 164 (293)
T ss_pred ChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCE-EEECCCC
Confidence 1122333344444443322345788999999999999999999998 8899999
No 149
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1.4e-11 Score=101.77 Aligned_cols=139 Identities=21% Similarity=0.317 Sum_probs=82.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh----CCceechhH-------HHHHHHhcCCh----hhHHHHHHhhcCCCCCHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY----GLTHLSAGE-------LLRREIASNSE----YGTTILNTIKEGKIVPSEVTV 74 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~----~~~~i~~~~-------~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~ 74 (196)
.+++|.||+||||||++++|.+.| |-..+|.-+ .+++.+....+ ++..+++++..|......
T Consensus 495 e~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~--- 571 (716)
T KOG0058|consen 495 EVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATD--- 571 (716)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCH---
Confidence 489999999999999999999887 333333222 23444443332 455688888887663322
Q ss_pred HHHHHHHhcCC-----------CCcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEeecCh-------HHHHHHHhhcc
Q 029287 75 SLIQKEMESSD-----------SKKFLIDG---FPRSEENRAAFERIMGAEPDIVLFFDCPE-------EEMVNRVLNRN 133 (196)
Q Consensus 75 ~~i~~~l~~~~-----------~~~~iid~---~~~~~~~~~~~~~~~~~~p~~~i~ld~~~-------~~~~~Rl~~r~ 133 (196)
+.+..+.+... .+..+-+. ++.+++||+++++++..+|.+ ++||+-+ |...+....+
T Consensus 572 e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~V-LILDEATSALDaeSE~lVq~aL~~- 649 (716)
T KOG0058|consen 572 EEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRV-LILDEATSALDAESEYLVQEALDR- 649 (716)
T ss_pred HHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCE-EEEechhhhcchhhHHHHHHHHHH-
Confidence 22222222111 22222222 556799999999999999998 6688765 3333333332
Q ss_pred CCCCCCcHHHHHHHHHHHHhc
Q 029287 134 EGRVDDNIDTVRKRLQVFKAL 154 (196)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~ 154 (196)
...+.+.-.+.||+...+..
T Consensus 650 -~~~~rTVlvIAHRLSTV~~A 669 (716)
T KOG0058|consen 650 -LMQGRTVLVIAHRLSTVRHA 669 (716)
T ss_pred -hhcCCeEEEEehhhhHhhhc
Confidence 11123555566666655544
No 150
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.25 E-value=1.5e-10 Score=80.21 Aligned_cols=112 Identities=20% Similarity=0.296 Sum_probs=62.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHh---C--CceechhHHHHHHHhcCChhhHHHH-HHhhcCCCCCHHHHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNY---G--LTHLSAGELLRREIASNSEYGTTIL-NTIKEGKIVPSEVTVSLIQKEM 81 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~---~--~~~i~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~i~~~l 81 (196)
++++|-|+|.+||||||+++.|.+++ | ...++. +.+++.+..+......-+ +.+ .....+...+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg-D~lR~~l~~dl~fs~~dR~e~~---------rr~~~~A~ll 70 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDG-DNLRHGLNADLGFSKEDREENI---------RRIAEVAKLL 70 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH-HHHCTTTTTT--SSHHHHHHHH---------HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC-cchhhccCCCCCCCHHHHHHHH---------HHHHHHHHHH
Confidence 36889999999999999999999998 3 445565 344443333221111111 010 0112222222
Q ss_pred hcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHh
Q 029287 82 ESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVL 130 (196)
Q Consensus 82 ~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~ 130 (196)
. ..+..+|+.........+......+....-+-||++||.+++.+|=.
T Consensus 71 ~-~~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD~ 118 (156)
T PF01583_consen 71 A-DQGIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCRKRDP 118 (156)
T ss_dssp H-HTTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHTT
T ss_pred H-hCCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhCc
Confidence 2 24566777776666666665555554334567999999999999854
No 151
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.25 E-value=3.1e-11 Score=90.90 Aligned_cols=161 Identities=21% Similarity=0.289 Sum_probs=100.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH-----------------HHHHHhcCChhh-----HHHHHHhhcC--
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL-----------------LRREIASNSEYG-----TTILNTIKEG-- 65 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~-----------------~~~~~~~~~~~~-----~~~~~~l~~~-- 65 (196)
=+++|+|.||+||||+.+++- ++...+.|.+ .|+.+....++. .+..+++...
T Consensus 33 eI~GIIG~SGAGKSTLiR~iN---~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLe 109 (339)
T COG1135 33 EIFGIIGYSGAGKSTLLRLIN---LLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLE 109 (339)
T ss_pred cEEEEEcCCCCcHHHHHHHHh---ccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHh
Confidence 488999999999999999887 6555544433 233333333321 1222222221
Q ss_pred -CCCCHHHHHHHHHHHHhcCCCCcEEEeCCCC----CHHHHHHHHHHhCCCCcEEEEeecCh--------HHHHHHHhhc
Q 029287 66 -KIVPSEVTVSLIQKEMESSDSKKFLIDGFPR----SEENRAAFERIMGAEPDIVLFFDCPE--------EEMVNRVLNR 132 (196)
Q Consensus 66 -~~~~~~~~~~~i~~~l~~~~~~~~iid~~~~----~~~~~~~~~~~~~~~p~~~i~ld~~~--------~~~~~Rl~~r 132 (196)
...+.....+.+.+.++..+-..+ .+.||. +++|++.+++++...|++ ++.|+++ +.+.+.+.+-
T Consensus 110 iag~~k~ei~~RV~elLelVgL~dk-~~~yP~qLSGGQKQRVaIARALa~~P~i-LL~DEaTSALDP~TT~sIL~LL~~I 187 (339)
T COG1135 110 LAGVPKAEIKQRVAELLELVGLSDK-ADRYPAQLSGGQKQRVAIARALANNPKI-LLCDEATSALDPETTQSILELLKDI 187 (339)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhh-hccCchhcCcchhhHHHHHHHHhcCCCE-EEecCccccCChHHHHHHHHHHHHH
Confidence 113455566667777776555555 667774 699999999999999999 7799877 3333333322
Q ss_pred cCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHHH
Q 029287 133 NEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQV 184 (196)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~i 184 (196)
.+ +..... ...+|....+..+|++..++. |...+++.+++..-
T Consensus 188 n~---~lglTI------vlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~P 233 (339)
T COG1135 188 NR---ELGLTI------VLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANP 233 (339)
T ss_pred HH---HcCCEE------EEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCc
Confidence 10 001111 445677777888888776664 66677888887554
No 152
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.24 E-value=3.8e-10 Score=93.82 Aligned_cols=165 Identities=14% Similarity=0.094 Sum_probs=86.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhCC------ceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHH
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYGL------THLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKE 80 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~ 80 (196)
+.+.+|+|+|++||||||+++.|++.++. .+++.| .+++.+.........-++... ..........
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D-~vr~~l~ge~~f~~~er~~~~-------~~l~~~a~~v 461 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGD-VVRKHLSSELGFSKEDRDLNI-------LRIGFVASEI 461 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCc-HHHHhccCCCCCCHHHHHHHH-------HHHHHHHHHH
Confidence 44578999999999999999999999985 677765 445544322111100000000 0001111112
Q ss_pred HhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCc-EEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHH
Q 029287 81 MESSDSKKFLIDGFPRSEENRAAFERIMGAEPD-IVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVI 159 (196)
Q Consensus 81 l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~-~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (196)
+. .+.++|++........+..+...+..... ++|||++|++++.+|..+... .....+.++. .|... .
T Consensus 462 ~~--~Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~rr~Ll--~~~~~~~i~~---l~~~R-~--- 530 (568)
T PRK05537 462 TK--NGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRDRKGLY--AKAREGKIKG---FTGIS-D--- 530 (568)
T ss_pred Hh--CCCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhcccccc--ccchhchhhc---ccccc-c---
Confidence 22 35667777654444334444433322222 479999999999999743210 0001111111 11111 1
Q ss_pred HHHHhcCcEEEEeCC-CCHhHHHHHHHHHHHh
Q 029287 160 NYYARRGKLYTINAV-GTVDEIFEQVRAVFAA 190 (196)
Q Consensus 160 ~~~~~~~~~~~I~~~-~~~~~v~~~i~~~i~~ 190 (196)
.+|.....-++||++ .+++++.++|...+..
T Consensus 531 ~yy~p~~Adl~IDt~~~s~~eiv~~Il~~L~~ 562 (568)
T PRK05537 531 PYEPPANPELVIDTTNVTPDECAHKILLYLEE 562 (568)
T ss_pred cccCCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 122212223567765 5899999888777654
No 153
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.23 E-value=6.2e-12 Score=91.27 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=22.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYG 34 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~ 34 (196)
+|+|.|++||||||+++.|+..++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999999996
No 154
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.22 E-value=4.5e-10 Score=80.16 Aligned_cols=109 Identities=14% Similarity=0.209 Sum_probs=58.7
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhC-----CceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYG-----LTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMES 83 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~ 83 (196)
+.+|+|.|++||||||+++.|++.+. +.+++.+.+ ++.+.........-++ ........+...+.
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~-~~~~~~~~~~~~~~r~--------~~~~~~~~~a~~~~- 73 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV-RTNLSKGLGFSKEDRD--------TNIRRIGFVANLLT- 73 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH-HHHHhcCCCCChhhHH--------HHHHHHHHHHHHHH-
Confidence 45899999999999999999998872 455666544 3332211100000000 00000111222222
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHH
Q 029287 84 SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRV 129 (196)
Q Consensus 84 ~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl 129 (196)
..+..++++........+..+... ...+ .++||++|++++.+|.
T Consensus 74 ~~g~~vi~~~~~~~~~~~~~l~~~-~~~~-~~v~l~~~~e~~~~R~ 117 (175)
T PRK00889 74 RHGVIVLVSAISPYRETREEVRAN-IGNF-LEVFVDAPLEVCEQRD 117 (175)
T ss_pred hCCCEEEEecCCCCHHHHHHHHhh-cCCe-EEEEEcCCHHHHHHhC
Confidence 234456677653333333333332 2233 4699999999999995
No 155
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.22 E-value=5.9e-11 Score=85.08 Aligned_cols=114 Identities=17% Similarity=0.316 Sum_probs=69.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCc---------eechhHH---------HHHHHhcC----ChhhHHHHHHhhcC
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLT---------HLSAGEL---------LRREIASN----SEYGTTILNTIKEG 65 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~---------~i~~~~~---------~~~~~~~~----~~~~~~~~~~l~~~ 65 (196)
...+.+++|||||||||+++.|-+-.... .++..++ +|+.+... +++...+.+++..|
T Consensus 32 ~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG 111 (253)
T COG1117 32 KNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYG 111 (253)
T ss_pred CCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCCchHHHHHHHh
Confidence 34689999999999999999998654211 1111111 34443322 23445566666555
Q ss_pred CCCC---HHHHHHHHHHHHhcCCCCcEE-------EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 66 KIVP---SEVTVSLIQKEMESSDSKKFL-------IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 66 ~~~~---~~~~~~~i~~~l~~~~~~~~i-------id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
..+. +....+.++..+..+.-=.-| .-+++.+++|++.+++++...|++ +++|+|.
T Consensus 112 ~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeV-lLmDEPt 177 (253)
T COG1117 112 LRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEV-LLMDEPT 177 (253)
T ss_pred HHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcE-EEecCcc
Confidence 3322 233334444444422100001 223667899999999999999998 8899998
No 156
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=9.7e-12 Score=97.79 Aligned_cols=166 Identities=19% Similarity=0.312 Sum_probs=92.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH------------HHHhcCCh-----hhHHHHHHhhcCC---CCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR------------REIASNSE-----YGTTILNTIKEGK---IVP 69 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~------------~~~~~~~~-----~~~~~~~~l~~~~---~~~ 69 (196)
-+++|.||+||||||++++|+ |+...+.|.+.. +.+....+ ...++.+++..+. ...
T Consensus 33 e~~~llGpsGsGKSTLLr~Ia---Gl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~ 109 (351)
T PRK11432 33 TMVTLLGPSGCGKTTVLRLVA---GLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVP 109 (351)
T ss_pred CEEEEECCCCCcHHHHHHHHH---CCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCC
Confidence 478999999999999999999 877666654421 11111111 0112333333221 122
Q ss_pred HHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH
Q 029287 70 SEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK 146 (196)
Q Consensus 70 ~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~ 146 (196)
.....+.+.+.+...+-..+ -...++.++.|++++++++...|++ ++||+|+..+....+..- ......+.+
T Consensus 110 ~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~l-LLLDEP~s~LD~~~r~~l----~~~l~~l~~ 184 (351)
T PRK11432 110 KEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKV-LLFDEPLSNLDANLRRSM----REKIRELQQ 184 (351)
T ss_pred HHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE-EEEcCCcccCCHHHHHHH----HHHHHHHHH
Confidence 22233344444443222222 1233555699999999999999999 779999944333333220 000111111
Q ss_pred ---HHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287 147 ---RLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ 183 (196)
Q Consensus 147 ---~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~ 183 (196)
....|.+|+...+..++++..++. |...++++++++.
T Consensus 185 ~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 185 QFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred hcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 123566677777777777544442 4456788887654
No 157
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.20 E-value=1.7e-10 Score=87.59 Aligned_cols=168 Identities=18% Similarity=0.256 Sum_probs=103.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCC--ceechhHHH----------HH---H----------------HhcCChhhHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGL--THLSAGELL----------RR---E----------------IASNSEYGTTI 58 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~--~~i~~~~~~----------~~---~----------------~~~~~~~~~~~ 58 (196)
-+++|+|-|||||||+++.+..-+.- ..+..|++. .+ . +.+....+.++
T Consensus 32 E~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi 111 (316)
T COG0444 32 EILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQI 111 (316)
T ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHH
Confidence 48999999999999999999966531 123333221 00 1 11222356667
Q ss_pred HHHhhcCCCC-CHHHHHHHHHHHHhcCCC--CcEEEeCCCC----CHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhh
Q 029287 59 LNTIKEGKIV-PSEVTVSLIQKEMESSDS--KKFLIDGFPR----SEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLN 131 (196)
Q Consensus 59 ~~~l~~~~~~-~~~~~~~~i~~~l~~~~~--~~~iid~~~~----~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~ 131 (196)
.+.+..+... ......+...+.++...- ..-+++.||+ ++.||+.++.++...|++ ++-|+|+.-+.--...
T Consensus 112 ~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~L-lIADEPTTALDvt~Qa 190 (316)
T COG0444 112 AEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKL-LIADEPTTALDVTVQA 190 (316)
T ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCE-EEeCCCcchhhHHHHH
Confidence 7777643322 233334444555554322 1225777776 599999999999999999 7799999333222211
Q ss_pred ccCCCCCCcHHHHHHH------HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHHHH
Q 029287 132 RNEGRVDDNIDTVRKR------LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQVR 185 (196)
Q Consensus 132 r~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~i~ 185 (196)
+ -.+.+++. .-.+.+|+...+..++++..|+. |...++.+++++.-.
T Consensus 191 q-------Il~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~~~P~ 246 (316)
T COG0444 191 Q-------ILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKNPK 246 (316)
T ss_pred H-------HHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHhcCCC
Confidence 1 01111111 12578899999999999766665 777888888877643
No 158
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.19 E-value=1.3e-11 Score=97.39 Aligned_cols=166 Identities=17% Similarity=0.271 Sum_probs=90.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH------------HHhcCCh-----hhHHHHHHhhcCCC---CC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR------------EIASNSE-----YGTTILNTIKEGKI---VP 69 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~------------~~~~~~~-----~~~~~~~~l~~~~~---~~ 69 (196)
-+++|.||+||||||++++|+ |+...+.|.+... .+....+ ...++.+++..+.. ..
T Consensus 31 e~~~llG~sGsGKSTLLr~ia---Gl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~ 107 (356)
T PRK11650 31 EFIVLVGPSGCGKSTLLRMVA---GLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMP 107 (356)
T ss_pred CEEEEECCCCCcHHHHHHHHH---CCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCC
Confidence 478999999999999999999 8776665544211 1111111 01123344432211 22
Q ss_pred HHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH
Q 029287 70 SEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK 146 (196)
Q Consensus 70 ~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~ 146 (196)
.......+.+.+...+-..+ -...++.++.|++++++++...|++ ++||+|+..+.......- ......+.+
T Consensus 108 ~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~l-lLLDEP~s~LD~~~r~~l----~~~l~~l~~ 182 (356)
T PRK11650 108 KAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAV-FLFDEPLSNLDAKLRVQM----RLEIQRLHR 182 (356)
T ss_pred HHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCcccCCHHHHHHH----HHHHHHHHH
Confidence 22222333444443222221 1334566799999999999999999 789999943333222210 000111111
Q ss_pred H---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287 147 R---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ 183 (196)
Q Consensus 147 ~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~ 183 (196)
. ...|.+|+...+..++++..++. +...++++++++.
T Consensus 183 ~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 183 RLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred hcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 1 13566677766767776543432 4445678887654
No 159
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.19 E-value=1.1e-10 Score=85.82 Aligned_cols=109 Identities=16% Similarity=0.079 Sum_probs=62.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-HHH----Hh--cCChhhHHHHHHhhcC---CCCCHHHHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-RRE----IA--SNSEYGTTILNTIKEG---KIVPSEVTVSLIQK 79 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-~~~----~~--~~~~~~~~~~~~l~~~---~~~~~~~~~~~i~~ 79 (196)
-+++|.|++||||||+++.|+ |....+.|.+. ... .. ..........+++... ...........+..
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~---Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~ 90 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLC---GLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGDEFSHFCYQ 90 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 588999999999999999999 77666666542 110 00 0000111222222210 11122222222222
Q ss_pred HHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 80 EMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 80 ~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
..........-+..++.++.++..++.++...|++ +++|+|+
T Consensus 91 ~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~l-lllDEP~ 132 (213)
T PRK15177 91 LTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRL-YIADGKL 132 (213)
T ss_pred HhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCE-EEECCCC
Confidence 22211111122456778899999999999999998 7799996
No 160
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.19 E-value=1.4e-11 Score=97.68 Aligned_cols=167 Identities=17% Similarity=0.281 Sum_probs=91.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH------------HHHhcCCh-----hhHHHHHHhhcCCC---CC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR------------REIASNSE-----YGTTILNTIKEGKI---VP 69 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~------------~~~~~~~~-----~~~~~~~~l~~~~~---~~ 69 (196)
-+++|.|++||||||++++|+ |+...+.|.+.. +.+....+ ....+.+++..+.. .+
T Consensus 41 e~~~LlGpsGsGKSTLLr~Ia---Gl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~ 117 (375)
T PRK09452 41 EFLTLLGPSGCGKTTVLRLIA---GFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTP 117 (375)
T ss_pred CEEEEECCCCCcHHHHHHHHh---CCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCC
Confidence 378999999999999999999 776665554321 11111111 01123344332211 12
Q ss_pred HHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH
Q 029287 70 SEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK 146 (196)
Q Consensus 70 ~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~ 146 (196)
.......+.+.++..+-..+ -...++.++.|++++++++...|++ ++||+|+..+....+.. .......+.+
T Consensus 118 ~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~l-lLLDEP~s~LD~~~r~~----l~~~L~~l~~ 192 (375)
T PRK09452 118 AAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKV-LLLDESLSALDYKLRKQ----MQNELKALQR 192 (375)
T ss_pred HHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCCCcCCHHHHHH----HHHHHHHHHH
Confidence 22222333344443222221 1234556799999999999999998 88999994333333222 0001111111
Q ss_pred H---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHHH
Q 029287 147 R---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQV 184 (196)
Q Consensus 147 ~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~i 184 (196)
. ...|.+|+...+..++++..++. |...++++++++.-
T Consensus 193 ~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 193 KLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 1 12567777777777776544432 44556788877653
No 161
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.18 E-value=3.3e-11 Score=95.04 Aligned_cols=166 Identities=17% Similarity=0.223 Sum_probs=84.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH------------------HHHhcCChh-----hHHHHHHhhcCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR------------------REIASNSEY-----GTTILNTIKEGK 66 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~------------------~~~~~~~~~-----~~~~~~~l~~~~ 66 (196)
-+++|.|++||||||++++|+ |....+.|.+.. +.+....+. ...+.+++..+.
T Consensus 25 e~~~l~G~nGsGKSTLl~~ia---Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~ 101 (352)
T PRK11144 25 GITAIFGRSGAGKTSLINAIS---GLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGM 101 (352)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhh
Confidence 478999999999999999999 765544443311 001111110 112333333221
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH
Q 029287 67 IVPSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK 146 (196)
Q Consensus 67 ~~~~~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~ 146 (196)
..........+.+.+........-...++.++.|++.+++++...|++ ++||+|+.-+....... ..+....+.+
T Consensus 102 ~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~l-lLLDEPts~LD~~~~~~----l~~~L~~l~~ 176 (352)
T PRK11144 102 AKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPEL-LLMDEPLASLDLPRKRE----LLPYLERLAR 176 (352)
T ss_pred hhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCE-EEEcCCcccCCHHHHHH----HHHHHHHHHH
Confidence 111111112222222221111112345667799999999999999998 77999993322221111 0000111111
Q ss_pred ---HHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287 147 ---RLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ 183 (196)
Q Consensus 147 ---~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~ 183 (196)
....+.+|+...+..++++..++. +...+++++++..
T Consensus 177 ~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~ 219 (352)
T PRK11144 177 EINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWAS 219 (352)
T ss_pred hcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhC
Confidence 112456677666666666433332 3445677777654
No 162
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.18 E-value=1.5e-10 Score=91.26 Aligned_cols=166 Identities=20% Similarity=0.279 Sum_probs=91.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH------------HHHhcCChh-----hHHHHHHhhcCC---CCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR------------REIASNSEY-----GTTILNTIKEGK---IVP 69 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~------------~~~~~~~~~-----~~~~~~~l~~~~---~~~ 69 (196)
-+++|.||+||||||++++|+ |....+.|.+.. +.+....+. ..++.+++..+. ...
T Consensus 31 e~~~l~GpsGsGKSTLLr~ia---Gl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~ 107 (353)
T TIGR03265 31 EFVCLLGPSGCGKTTLLRIIA---GLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMG 107 (353)
T ss_pred CEEEEECCCCCCHHHHHHHHH---CCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCC
Confidence 478999999999999999999 876665554321 111111110 112333333221 112
Q ss_pred HHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH
Q 029287 70 SEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK 146 (196)
Q Consensus 70 ~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~ 146 (196)
.......+.+.++..+-..+ -...++.++.|++++++++...|++ ++||+|...+....+..- ......+.+
T Consensus 108 ~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~l-lLLDEP~s~LD~~~r~~l----~~~L~~l~~ 182 (353)
T TIGR03265 108 RAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGL-LLLDEPLSALDARVREHL----RTEIRQLQR 182 (353)
T ss_pred HHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCcccCCHHHHHHH----HHHHHHHHH
Confidence 22222333444443222222 1233556799999999999999999 779999944433332220 001111111
Q ss_pred H---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287 147 R---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ 183 (196)
Q Consensus 147 ~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~ 183 (196)
+ ...|.+|+...+..++++..++. |...++++++++.
T Consensus 183 ~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~ 225 (353)
T TIGR03265 183 RLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225 (353)
T ss_pred hcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 1 12567777777777776443332 4456778888764
No 163
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.17 E-value=1.2e-11 Score=87.50 Aligned_cols=112 Identities=15% Similarity=0.211 Sum_probs=69.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhC----Cceechh--------HHHHHHHhcC-----ChhhHHHHHHhhcCCCC---
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYG----LTHLSAG--------ELLRREIASN-----SEYGTTILNTIKEGKIV--- 68 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~----~~~i~~~--------~~~~~~~~~~-----~~~~~~~~~~l~~~~~~--- 68 (196)
..+..|+||+|+||||++++.++-.+ -..++.- ++.++ ++.. .....++++....|+.=
T Consensus 27 g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~-lSILkQ~N~i~~rlTV~dLv~FGRfPYSq 105 (252)
T COG4604 27 GGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKK-LSILKQENHINSRLTVRDLVGFGRFPYSQ 105 (252)
T ss_pred CceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHH-HHHHHhhchhhheeEHHHHhhcCCCcccC
Confidence 36889999999999999999886552 2222211 11111 1111 11222355666555321
Q ss_pred -----CHHHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 69 -----PSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 69 -----~~~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
++........+++...+-..-.+|.++.++.|+..++.-+++..|+ |+||+|.
T Consensus 106 GRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdy-vlLDEPL 163 (252)
T COG4604 106 GRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDY-VLLDEPL 163 (252)
T ss_pred CCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcE-EEecCcc
Confidence 1233334444455554444445888999999999999889999999 8899998
No 164
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=99.17 E-value=3e-09 Score=81.26 Aligned_cols=149 Identities=15% Similarity=0.161 Sum_probs=73.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcC--C
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESS--D 85 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~--~ 85 (196)
.+.+|+|+|++||||||+++.|.+ .|+..++.-.. . ....+.+..... .
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~~-~g~~~~d~~~~---------------------------~-L~~~l~~~~~~~~~~ 55 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALED-LGYYCVDNLPP---------------------------S-LLPKLVELLAQSGGI 55 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHHH-cCCeEECCcCH---------------------------H-HHHHHHHHHHhcCCC
Confidence 346899999999999999999974 47766543110 0 011111111211 1
Q ss_pred C-CcEEEeCCCCCH-HHH-HHHHHHhC-CCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHH
Q 029287 86 S-KKFLIDGFPRSE-ENR-AAFERIMG-AEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINY 161 (196)
Q Consensus 86 ~-~~~iid~~~~~~-~~~-~~~~~~~~-~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (196)
. -.+++|--.... ... ..+..... ...-.+|||++|++++.+|+..++..|+........+. .+... .....
T Consensus 56 ~~~av~iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~~~l~e~--I~~eR-~~l~p- 131 (288)
T PRK05416 56 RKVAVVIDVRSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSETRRRHPLSGDGSLLEG--IELER-ELLAP- 131 (288)
T ss_pred CCeEEEEccCchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhcccCCCccCCccHHHH--HHHHH-hhhhh-
Confidence 2 233455322211 111 12222111 12334599999999999999754323332110111111 11111 11111
Q ss_pred HHhcCcEEEEeC-CCCHhHHHHHHHHHHHh
Q 029287 162 YARRGKLYTINA-VGTVDEIFEQVRAVFAA 190 (196)
Q Consensus 162 ~~~~~~~~~I~~-~~~~~~v~~~i~~~i~~ 190 (196)
+.+.+. ++||+ +.+++++.++|.+.+..
T Consensus 132 l~~~AD-ivIDTs~ls~~el~e~I~~~l~~ 160 (288)
T PRK05416 132 LRERAD-LVIDTSELSVHQLRERIRERFGG 160 (288)
T ss_pred HHHhCC-EEEECCCCCHHHHHHHHHHHHhc
Confidence 112223 45665 45899999998887643
No 165
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.17 E-value=7.8e-11 Score=91.27 Aligned_cols=161 Identities=18% Similarity=0.219 Sum_probs=85.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCCh-----hhHHHHHHhhc-C--CCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNSE-----YGTTILNTIKE-G--KIV 68 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~~-----~~~~~~~~l~~-~--~~~ 68 (196)
-+++|.||+||||||+.++|+ |....+.|.+. ++.+...++ ...+..+++.. + ...
T Consensus 34 ei~gllGpNGaGKSTLl~~l~---Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~ 110 (306)
T PRK13537 34 ECFGLLGPNGAGKTTTLRMLL---GLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGL 110 (306)
T ss_pred cEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCC
Confidence 488999999999999999999 76555544321 111111111 11223333321 1 011
Q ss_pred CHHHHHHHHHHHHh---cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH-------HHHHhhccCCCCC
Q 029287 69 PSEVTVSLIQKEME---SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM-------VNRVLNRNEGRVD 138 (196)
Q Consensus 69 ~~~~~~~~i~~~l~---~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~-------~~Rl~~r~~~~~~ 138 (196)
........+.+.++ ......--+..++.++.|++.++.++...|++ ++||+|+.-+ ..++.++.. .
T Consensus 111 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~l-llLDEPt~gLD~~~~~~l~~~l~~l~---~ 186 (306)
T PRK13537 111 SAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDV-LVLDEPTTGLDPQARHLMWERLRSLL---A 186 (306)
T ss_pred CHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCE-EEEeCCCcCCCHHHHHHHHHHHHHHH---h
Confidence 11211222233333 22211122567888999999999999999999 8899999211 111111100 0
Q ss_pred CcHHHHHHHHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287 139 DNIDTVRKRLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ 183 (196)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~ 183 (196)
... ...+.+|....++.+|++..++. +...++++++.+.
T Consensus 187 ~g~------till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 187 RGK------TILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred CCC------EEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 011 12455677776777776443332 3345666666543
No 166
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.16 E-value=6.3e-11 Score=103.31 Aligned_cols=112 Identities=23% Similarity=0.348 Sum_probs=75.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh----CCceechhHH-------HHHHHhcCCh----hhHHHHHHhhcC-CCCCHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY----GLTHLSAGEL-------LRREIASNSE----YGTTILNTIKEG-KIVPSEVT 73 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~----~~~~i~~~~~-------~~~~~~~~~~----~~~~~~~~l~~~-~~~~~~~~ 73 (196)
.-++|.||+||||||+..+|.+.| |...+|..++ +|+.+....+ +..++++++..| ..++...+
T Consensus 1017 qTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eI 1096 (1228)
T KOG0055|consen 1017 QTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEI 1096 (1228)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHH
Confidence 578999999999999999999988 5556654443 5666554443 466689999888 22344433
Q ss_pred HHHHH-----HHHhc-CC-CCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 74 VSLIQ-----KEMES-SD-SKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 74 ~~~i~-----~~l~~-~~-~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.+... +.+.. ++ .+..+-+ .++.+++||.++++++..+|.+ ++||+-+
T Consensus 1097 i~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkI-LLLDEAT 1154 (1228)
T KOG0055|consen 1097 IEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKI-LLLDEAT 1154 (1228)
T ss_pred HHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCe-eeeeccc
Confidence 33222 11111 11 2333332 2667799999999999999998 7799866
No 167
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.16 E-value=3.4e-11 Score=95.59 Aligned_cols=166 Identities=20% Similarity=0.284 Sum_probs=90.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH------------HHHhcCCh-----hhHHHHHHhhcCC---CCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR------------REIASNSE-----YGTTILNTIKEGK---IVP 69 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~------------~~~~~~~~-----~~~~~~~~l~~~~---~~~ 69 (196)
-+++|.||+||||||++++|+ |+...+.|.+.. +.+....+ ....+.+++..+. ...
T Consensus 46 e~~~llGpsGsGKSTLLr~Ia---Gl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~ 122 (377)
T PRK11607 46 EIFALLGASGCGKSTLLRMLA---GFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLP 122 (377)
T ss_pred CEEEEECCCCCcHHHHHHHHh---CCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCC
Confidence 478999999999999999999 877665554321 11111111 0112333333221 122
Q ss_pred HHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH
Q 029287 70 SEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK 146 (196)
Q Consensus 70 ~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~ 146 (196)
.....+.+.+.++...-..+ -...++.++.|++++++++...|++ ++||+|+..+....+..- ......+.+
T Consensus 123 ~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~l-LLLDEP~s~LD~~~r~~l----~~~l~~l~~ 197 (377)
T PRK11607 123 KAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKL-LLLDEPMGALDKKLRDRM----QLEVVDILE 197 (377)
T ss_pred HHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCcccCCHHHHHHH----HHHHHHHHH
Confidence 22223334444443222222 1234556799999999999999999 889999944333322210 000001111
Q ss_pred ---HHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287 147 ---RLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ 183 (196)
Q Consensus 147 ---~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~ 183 (196)
....|.+|+...+..++++..++. |...+++++++..
T Consensus 198 ~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~ 240 (377)
T PRK11607 198 RVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH 240 (377)
T ss_pred hcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence 112566777777777777543332 4455778887754
No 168
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=99.16 E-value=1.5e-09 Score=93.67 Aligned_cols=38 Identities=29% Similarity=0.470 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE 47 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~ 47 (196)
++|+|.||+||||||+++.|++++|+.+++.|.++|..
T Consensus 35 ~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~ 72 (863)
T PRK12269 35 VIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAF 72 (863)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence 58999999999999999999999999999999998764
No 169
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.15 E-value=2.1e-09 Score=74.73 Aligned_cols=108 Identities=19% Similarity=0.265 Sum_probs=61.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh---CC--ceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHH---HHHHHh
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNY---GL--THLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSL---IQKEME 82 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~---~~--~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---i~~~l~ 82 (196)
+++|.|+|||||||+++.|++.+ |. ..++. +-+++.+....... .......... ....+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~-d~~r~~l~~~~~~~-----------~~~~~~~~~~~~~~a~~l~ 68 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG-DNVRHGLNKDLGFS-----------REDREENIRRIAEVAKLLA 68 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC-HHHHHhhhhccCCC-----------cchHHHHHHHHHHHHHHHH
Confidence 46789999999999999999998 53 33444 33443322111000 0000011111 111221
Q ss_pred cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhh
Q 029287 83 SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLN 131 (196)
Q Consensus 83 ~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~ 131 (196)
..+..+|+|........+..+.......+-.+++|++|.+++.+|-.+
T Consensus 69 -~~G~~VIid~~~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~ 116 (149)
T cd02027 69 -DAGLIVIAAFISPYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPK 116 (149)
T ss_pred -hCCCEEEEccCCCCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCch
Confidence 235667788655555556555544433556679999999999998654
No 170
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.15 E-value=3.4e-11 Score=94.85 Aligned_cols=166 Identities=21% Similarity=0.300 Sum_probs=89.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH------------HHHhcCCh-----hhHHHHHHhhcCCC-----
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR------------REIASNSE-----YGTTILNTIKEGKI----- 67 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~------------~~~~~~~~-----~~~~~~~~l~~~~~----- 67 (196)
-+++|.||+||||||++++|+ |....+.|.+.. +.+....+ ....+.+++..+..
T Consensus 29 e~~~llGpsGsGKSTLLr~Ia---Gl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~ 105 (353)
T PRK10851 29 QMVALLGPSGSGKTTLLRIIA---GLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRR 105 (353)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccc
Confidence 488999999999999999999 766555544321 11111111 11223444433211
Q ss_pred --CCHHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHH
Q 029287 68 --VPSEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNID 142 (196)
Q Consensus 68 --~~~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~ 142 (196)
.........+.+.++...-..+ -...++.++.|++++++++...|++ ++||+|+..+....... ..+...
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~l-lLLDEP~s~LD~~~r~~----l~~~L~ 180 (353)
T PRK10851 106 ERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQI-LLLDEPFGALDAQVRKE----LRRWLR 180 (353)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCCccCCHHHHHH----HHHHHH
Confidence 1222222333344443222221 1334666799999999999999998 78999993332222221 000111
Q ss_pred HHHHH---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287 143 TVRKR---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ 183 (196)
Q Consensus 143 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~ 183 (196)
.+.++ ...+.+|+...+..++++..++. |...++++++++.
T Consensus 181 ~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 181 QLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 11111 12566777777777777543332 4445677877654
No 171
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.15 E-value=2.6e-10 Score=89.02 Aligned_cols=166 Identities=20% Similarity=0.230 Sum_probs=85.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------------HHHHhcCCh-----------hhHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------------RREIASNSE-----------YGTTILNT 61 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------------~~~~~~~~~-----------~~~~~~~~ 61 (196)
-+++|+|++||||||+++.|+ |+...+.|.+. ++.+....+ .+..+...
T Consensus 42 e~~~IvG~sGsGKSTLl~~l~---gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~ 118 (327)
T PRK11308 42 KTLAVVGESGCGKSTLARLLT---MIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEP 118 (327)
T ss_pred CEEEEECCCCCcHHHHHHHHH---cCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHH
Confidence 488999999999999999999 55433333221 111111111 11112221
Q ss_pred hhcCCCCCHHHHHHHHHHHHhcCCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCC
Q 029287 62 IKEGKIVPSEVTVSLIQKEMESSDSKKFLIDG----FPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRV 137 (196)
Q Consensus 62 l~~~~~~~~~~~~~~i~~~l~~~~~~~~iid~----~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~ 137 (196)
+..............+.+.+...+-..-..+. ++.++.|++.++.++...|++ +++|+|+.-+..-.... .
T Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~l-LilDEPts~LD~~~~~~----i 193 (327)
T PRK11308 119 LLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDV-VVADEPVSALDVSVQAQ----V 193 (327)
T ss_pred HHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCE-EEEECCCccCCHHHHHH----H
Confidence 11111122222223334444432221111333 455699999999999999998 77999992221111110 0
Q ss_pred CCcHHHHHH---HHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287 138 DDNIDTVRK---RLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ 183 (196)
Q Consensus 138 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~ 183 (196)
.+-...+.+ ....+.+|+...+..+++...++. |...++.+++++.
T Consensus 194 ~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~~~ 245 (327)
T PRK11308 194 LNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNN 245 (327)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 000000111 012567787777777777554443 5556777777654
No 172
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.15 E-value=7e-11 Score=93.29 Aligned_cols=167 Identities=16% Similarity=0.243 Sum_probs=92.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceech--hHHHH------------HHHhcCCh-----hhHHHHHHhhcC---CC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSA--GELLR------------REIASNSE-----YGTTILNTIKEG---KI 67 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~--~~~~~------------~~~~~~~~-----~~~~~~~~l~~~---~~ 67 (196)
-+++|.||+||||||++++|+ |+...+. |.+.. +.+....+ ...++.+++..+ ..
T Consensus 32 e~~~llGpsGsGKSTLLr~ia---Gl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~ 108 (362)
T TIGR03258 32 ELLALIGKSGCGKTTLLRAIA---GFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQK 108 (362)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcC
Confidence 478999999999999999999 8777666 54421 11111111 011233333321 11
Q ss_pred CCHHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHH
Q 029287 68 VPSEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTV 144 (196)
Q Consensus 68 ~~~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~ 144 (196)
.+.......+.+.++..+-..+ -...++.++.|++++++++...|++ ++||+|...+....... .......+
T Consensus 109 ~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~l-lLLDEP~s~LD~~~r~~----l~~~l~~l 183 (362)
T TIGR03258 109 MPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDV-LLLDEPLSALDANIRAN----MREEIAAL 183 (362)
T ss_pred CCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEcCccccCCHHHHHH----HHHHHHHH
Confidence 2222223334444443222222 1334666799999999999999999 78999994433332221 00011111
Q ss_pred HHH----HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHHH
Q 029287 145 RKR----LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQV 184 (196)
Q Consensus 145 ~~~----~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~i 184 (196)
.++ ...|.+|+...+..++++..++. +...++++++++..
T Consensus 184 ~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p 230 (362)
T TIGR03258 184 HEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230 (362)
T ss_pred HHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 111 12567777777777776544432 44567888887653
No 173
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.15 E-value=9e-11 Score=85.84 Aligned_cols=34 Identities=21% Similarity=0.397 Sum_probs=28.1
Q ss_pred eCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHH
Q 029287 92 DGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMV 126 (196)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~ 126 (196)
..++.+++||+++++++...|.+ |+.|+|+..+.
T Consensus 141 ~eLSGGqqQRVAIARAL~~~P~i-ilADEPTgnLD 174 (226)
T COG1136 141 SELSGGQQQRVAIARALINNPKI-ILADEPTGNLD 174 (226)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCe-EEeeCccccCC
Confidence 34556799999999999999999 88999995543
No 174
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.15 E-value=6.8e-11 Score=89.71 Aligned_cols=172 Identities=17% Similarity=0.210 Sum_probs=89.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHH------hcCChhhHHHHHHhhcC---CCCCHHHHHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREI------ASNSEYGTTILNTIKEG---KIVPSEVTVSLIQKE 80 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~l~~~---~~~~~~~~~~~i~~~ 80 (196)
-+++|.|++||||||++++|+ |....+.|.+..... .........+.+++..+ ...........+...
T Consensus 51 e~~~liG~NGsGKSTLlk~L~---Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~ 127 (264)
T PRK13546 51 DVIGLVGINGSGKSTLSNIIG---GSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKI 127 (264)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 478999999999999999999 766555543321110 00000111233333211 011222222222223
Q ss_pred HhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH-----HHHHHH
Q 029287 81 MESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK-----RLQVFK 152 (196)
Q Consensus 81 l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~-----~~~~~~ 152 (196)
+.......+ -+..++.++.+++.++.++...|++ ++||+|+.-+.....+. -.+.+.+ ....+.
T Consensus 128 l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~i-LlLDEPt~gLD~~~~~~-------l~~~L~~~~~~g~tiIii 199 (264)
T PRK13546 128 IEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDI-LVIDEALSVGDQTFAQK-------CLDKIYEFKEQNKTIFFV 199 (264)
T ss_pred HHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCE-EEEeCccccCCHHHHHH-------HHHHHHHHHHCCCEEEEE
Confidence 322111111 2445777899999999999999998 77999993322111110 0001110 011344
Q ss_pred hchHhHHHHHHhcCcEEE---EeCCCCHhHHHHHHHHHHHhhh
Q 029287 153 ALNLPVINYYARRGKLYT---INAVGTVDEIFEQVRAVFAALK 192 (196)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~i~~~i~~~~ 192 (196)
+|....+..+++...++. +...++.+++.+.+...++.+.
T Consensus 200 sH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 242 (264)
T PRK13546 200 SHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKYEAFLNDFK 242 (264)
T ss_pred cCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHHHhHHHHHHHH
Confidence 455555555555433321 3445678888877766665544
No 175
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.14 E-value=1.6e-10 Score=89.44 Aligned_cols=109 Identities=19% Similarity=0.236 Sum_probs=62.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCCh-----hhHHHHHHhhcC---CCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNSE-----YGTTILNTIKEG---KIV 68 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~~-----~~~~~~~~l~~~---~~~ 68 (196)
-+++|.||+||||||++++|+ |+...+.|++. ++.+...++ ...+..+++... ...
T Consensus 20 e~~~l~G~NGaGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 96 (302)
T TIGR01188 20 EVFGFLGPNGAGKTTTIRMLT---TLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGL 96 (302)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCC
Confidence 488999999999999999999 76554444321 111211111 111233333211 011
Q ss_pred CHHHHHHHHHHHHhc---CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 69 PSEVTVSLIQKEMES---SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 69 ~~~~~~~~i~~~l~~---~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
........+.+.+.. .....--+..++.++.|++.++.++...|++ ++||+|+
T Consensus 97 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l-llLDEPt 152 (302)
T TIGR01188 97 PKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDV-LFLDEPT 152 (302)
T ss_pred CHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCC
Confidence 111111222333332 2111122456888899999999999999999 7899999
No 176
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.14 E-value=5.7e-12 Score=91.95 Aligned_cols=161 Identities=20% Similarity=0.296 Sum_probs=93.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH---------------HHHHhcCChh-----hHHHHHHhhcC----
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL---------------RREIASNSEY-----GTTILNTIKEG---- 65 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~---------------~~~~~~~~~~-----~~~~~~~l~~~---- 65 (196)
-+++|+||+||||||+-+.++ |+...+.|.+. +..+.-..+. .-+.-+++.-+
T Consensus 31 ei~~LIGPNGAGKTTlfNlit---G~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~ 107 (250)
T COG0411 31 EIVGLIGPNGAGKTTLFNLIT---GFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHAR 107 (250)
T ss_pred eEEEEECCCCCCceeeeeeec---ccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhh
Confidence 589999999999999999999 66665555442 1111111110 00011111110
Q ss_pred ----------CC-CCHHHHHHHHHHHHh---cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh--------H
Q 029287 66 ----------KI-VPSEVTVSLIQKEME---SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE--------E 123 (196)
Q Consensus 66 ----------~~-~~~~~~~~~i~~~l~---~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~--------~ 123 (196)
.. -......+.....++ ......-....++.++..++.+++++...|.+ ++||+|. +
T Consensus 108 ~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~l-LLLDEPaAGln~~e~~ 186 (250)
T COG0411 108 LGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKL-LLLDEPAAGLNPEETE 186 (250)
T ss_pred hhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCE-EEecCccCCCCHHHHH
Confidence 00 012222333333333 22222334556777888899999999999999 8899998 3
Q ss_pred HHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287 124 EMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ 183 (196)
Q Consensus 124 ~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~ 183 (196)
.+.+++.+-+ ....... ...+|+......+|++..|+. +-+++++++|.+.
T Consensus 187 ~l~~~i~~i~---~~~g~ti------llIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~d 240 (250)
T COG0411 187 ELAELIRELR---DRGGVTI------LLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNN 240 (250)
T ss_pred HHHHHHHHHH---hcCCcEE------EEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhcC
Confidence 3333333221 0011122 457788888888888655543 5688999999865
No 177
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.14 E-value=1.8e-09 Score=91.46 Aligned_cols=159 Identities=17% Similarity=0.227 Sum_probs=86.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHh-----CCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHH---HHH--
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNY-----GLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT---VSL-- 76 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~-- 76 (196)
..+++|+++|.|||||||+++.|++++ +..+++.|+ +++.+... ....+... ...
T Consensus 458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~-~r~~l~~~--------------~~~~~~~r~~~~~~l~ 522 (632)
T PRK05506 458 QKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDN-VRHGLNRD--------------LGFSDADRVENIRRVA 522 (632)
T ss_pred CCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChh-hhhccCCC--------------CCCCHHHHHHHHHHHH
Confidence 357899999999999999999999997 245666644 44433211 11111111 111
Q ss_pred -HHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhch
Q 029287 77 -IQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALN 155 (196)
Q Consensus 77 -i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~ 155 (196)
+...+ ...+..+|++........+..+.......+-.++||++|.+.+.+|. .|+. ....+.+.+. .+....
T Consensus 523 ~~a~~~-~~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~-~r~L-~~~~~~~~l~----~l~~~r 595 (632)
T PRK05506 523 EVARLM-ADAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARD-PKGL-YAKARAGEIK----NFTGID 595 (632)
T ss_pred HHHHHH-HhCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhC-Ccch-hhhccccccc----cccccc
Confidence 11111 12346677886555556665544433333446799999999999994 2310 0000011111 111111
Q ss_pred HhHHHHHHhcCcEEEEeC-CCCHhHHHHHHHHHHHh
Q 029287 156 LPVINYYARRGKLYTINA-VGTVDEIFEQVRAVFAA 190 (196)
Q Consensus 156 ~~~~~~~~~~~~~~~I~~-~~~~~~v~~~i~~~i~~ 190 (196)
.+ ++.....-+.||+ ..+++++.++|.+.+..
T Consensus 596 ~~---y~~P~~a~~~Id~~~~s~~e~v~~Ii~~l~~ 628 (632)
T PRK05506 596 SP---YEAPENPELRLDTTGRSPEELAEQVLELLRR 628 (632)
T ss_pred cC---CCCCCCCeEEEeCCCCCHHHHHHHHHHHHHH
Confidence 11 1111234467776 67899998888777643
No 178
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.14 E-value=4.4e-11 Score=86.66 Aligned_cols=162 Identities=23% Similarity=0.322 Sum_probs=88.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH---------------HHHHhcCChh-----hHHHHHHhhcCCCC-
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL---------------RREIASNSEY-----GTTILNTIKEGKIV- 68 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~---------------~~~~~~~~~~-----~~~~~~~l~~~~~~- 68 (196)
-+++|.|++|+||||+++.++ |......|.+. +..+...++- ..+..+++.-+...
T Consensus 30 eiv~llG~NGaGKTTlLkti~---Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~ 106 (237)
T COG0410 30 EIVALLGRNGAGKTTLLKTIM---GLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYAR 106 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcc
Confidence 488999999999999999999 87766555442 2222222221 11234444433111
Q ss_pred CH----HHHHHHHHHHHhc-CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH----HHHHHhhccCCCCCC
Q 029287 69 PS----EVTVSLIQKEMES-SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE----MVNRVLNRNEGRVDD 139 (196)
Q Consensus 69 ~~----~~~~~~i~~~l~~-~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~----~~~Rl~~r~~~~~~~ 139 (196)
.+ ....+.+++.+.. .+...--...++.+++|++++++++...|.+ +.||+|.+- +.+++...
T Consensus 107 ~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pkl-LLLDEPs~GLaP~iv~~I~~~------- 178 (237)
T COG0410 107 RDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKL-LLLDEPSEGLAPKIVEEIFEA------- 178 (237)
T ss_pred cccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCE-EEecCCccCcCHHHHHHHHHH-------
Confidence 10 0001112221110 0011112344667799999999999999999 889999932 23332221
Q ss_pred cHHHHHHH---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287 140 NIDTVRKR---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ 183 (196)
Q Consensus 140 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~ 183 (196)
...+.+. ....-+++...+..++++..++. |..+++.+++.+.
T Consensus 179 -i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 179 -IKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred -HHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 1111110 00223344555666777766665 6677888888765
No 179
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.13 E-value=1.4e-09 Score=81.02 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=25.3
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 6 GKGPFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
...+.+++|.|++||||||+++.|+..+
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567999999999999999999999877
No 180
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.13 E-value=2.7e-09 Score=74.34 Aligned_cols=163 Identities=18% Similarity=0.224 Sum_probs=86.1
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHHHh---CC--ceechhHHHHHHHhcCChhhHH-HHHHhhcCCCCCHHHHHHHHHH
Q 029287 6 GKGPFICFVLGGPGSGKGTQCAKIVKNY---GL--THLSAGELLRREIASNSEYGTT-ILNTIKEGKIVPSEVTVSLIQK 79 (196)
Q Consensus 6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~---~~--~~i~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~i~~ 79 (196)
+.++++|=++|.|||||||++.+|.+++ |. ..+|. |.+|..+..+-.+... -.+++ .....+.+
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDG-DnvR~gL~~dLgFs~edR~eni---------RRvaevAk 89 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDG-DNVRHGLNRDLGFSREDRIENI---------RRVAEVAK 89 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecC-hhHhhcccCCCCCChHHHHHHH---------HHHHHHHH
Confidence 3456888889999999999999999997 43 23443 5566654433221111 11111 11223333
Q ss_pred HHhcCCCCcEEEeCCCCCHH-HHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhH
Q 029287 80 EMESSDSKKFLIDGFPRSEE-NRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPV 158 (196)
Q Consensus 80 ~l~~~~~~~~iid~~~~~~~-~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (196)
.+. +...+++-.+-+-.. .+..-...+.....+-||+|||.++|.+|=-+- .+++-...-..+...+
T Consensus 90 ll~--daG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RDpKG----------LYkKAr~GeI~~fTGi 157 (197)
T COG0529 90 LLA--DAGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRDPKG----------LYKKARAGEIKNFTGI 157 (197)
T ss_pred HHH--HCCeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcCchH----------HHHHHHcCCCCCCcCC
Confidence 333 233344444443333 333333334434556699999999999874432 1111111111111111
Q ss_pred HHHHHh-cCcEEEEeC-CCCHhHHHHHHHHHHHh
Q 029287 159 INYYAR-RGKLYTINA-VGTVDEIFEQVRAVFAA 190 (196)
Q Consensus 159 ~~~~~~-~~~~~~I~~-~~~~~~v~~~i~~~i~~ 190 (196)
-.-|.. ..+-+.+|+ ..++++..+.|.+.+..
T Consensus 158 d~pYE~P~~Pel~l~t~~~~vee~v~~i~~~l~~ 191 (197)
T COG0529 158 DSPYEAPENPELHLDTDRNSVEECVEQILDLLKE 191 (197)
T ss_pred CCCCCCCCCCeeEeccccCCHHHHHHHHHHHHHh
Confidence 111222 346667885 57888888887776643
No 181
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.13 E-value=2.3e-10 Score=81.10 Aligned_cols=110 Identities=19% Similarity=0.284 Sum_probs=68.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHH---hcCCh-----------hhHHHHHHhhcCCC---CCHHHH
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREI---ASNSE-----------YGTTILNTIKEGKI---VPSEVT 73 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~---~~~~~-----------~~~~~~~~l~~~~~---~~~~~~ 73 (196)
.+++.|||||||||+++.++ |+...+.|.+..... .++.+ .+....++...|.. ++....
T Consensus 33 ~vv~lGpSGcGKTTLLnl~A---Gf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R 109 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIA---GFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQR 109 (259)
T ss_pred EEEEEcCCCccHHHHHHHHh---cCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHH
Confidence 45669999999999999999 877666555432211 11111 23334444444422 222222
Q ss_pred HHHHHHHHh---cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 74 VSLIQKEME---SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 74 ~~~i~~~l~---~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
.....+.+. ..+.....+..++.++.|++.+++++.-.|++ ++||+|+.-
T Consensus 110 ~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~-LlLDEPfgA 162 (259)
T COG4525 110 REIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQL-LLLDEPFGA 162 (259)
T ss_pred HHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcce-EeecCchhh
Confidence 333333333 33333334666888999999999999999999 889999943
No 182
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.12 E-value=3.5e-10 Score=88.23 Aligned_cols=172 Identities=18% Similarity=0.285 Sum_probs=105.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh---CCceechhHH---HHHHHhcC-------C-------hhhHHHHHHhhcCCC---
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNY---GLTHLSAGEL---LRREIASN-------S-------EYGTTILNTIKEGKI--- 67 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~---~~~~i~~~~~---~~~~~~~~-------~-------~~~~~~~~~l~~~~~--- 67 (196)
.++|.|-|||||||++.+|..-+ |-..+...++ .++.+.+. . ....++-+.+.+|..
T Consensus 315 TlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~ 394 (534)
T COG4172 315 TLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHE 394 (534)
T ss_pred eEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcC
Confidence 68999999999999999999765 2222222222 12211111 0 111223344444433
Q ss_pred --CCHHHHHHHHHHHHhcCCCCcEEEeCCCC----CHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcH
Q 029287 68 --VPSEVTVSLIQKEMESSDSKKFLIDGFPR----SEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNI 141 (196)
Q Consensus 68 --~~~~~~~~~i~~~l~~~~~~~~iid~~~~----~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~ 141 (196)
.......+.+.+++...+.+.-...+||+ ++.|+.++++++-.+|.+ |.||+|+..+..-.... .-+-.
T Consensus 395 ~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~-i~LDEPTSALD~SVQaQ----vv~LL 469 (534)
T COG4172 395 PKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPEL-ILLDEPTSALDRSVQAQ----VLDLL 469 (534)
T ss_pred CCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcE-EEecCCchHhhHHHHHH----HHHHH
Confidence 33445566677777765555556777775 589999999999999999 77999995554443332 00000
Q ss_pred HHHHHH---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHHHHHH
Q 029287 142 DTVRKR---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQVRAV 187 (196)
Q Consensus 142 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~i~~~ 187 (196)
..++++ .-.|.+|+...+...|+...|+. |...++.+++++.-.+.
T Consensus 470 r~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~ 521 (534)
T COG4172 470 RDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHE 521 (534)
T ss_pred HHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcH
Confidence 111111 12578888888888888655554 77888999998765443
No 183
>COG0645 Predicted kinase [General function prediction only]
Probab=99.12 E-value=7.8e-09 Score=71.70 Aligned_cols=137 Identities=20% Similarity=0.252 Sum_probs=83.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHh------c
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEME------S 83 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~------~ 83 (196)
+++.+.|.+||||||+++.|.+.+|..++.+|.+ ++.+...+... +....++........+..+. .
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~i-rk~L~g~p~~~-------r~~~g~ys~~~~~~vy~~l~~~A~l~l 73 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVI-RKRLFGVPEET-------RGPAGLYSPAATAAVYDELLGRAELLL 73 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHH-HHHhcCCcccc-------cCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999999999999999999655 44444422110 00011111111111111111 2
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHHhC--CCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhc
Q 029287 84 SDSKKFLIDGFPRSEENRAAFERIMG--AEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKAL 154 (196)
Q Consensus 84 ~~~~~~iid~~~~~~~~~~~~~~~~~--~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~ 154 (196)
..+..+|+|.-.....++........ .-+-..|.+++|.+++.+|+..|..+..+.+...+..+...+...
T Consensus 74 ~~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~d~sDA~~~il~~q~~~~~~~ 146 (170)
T COG0645 74 SSGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKGDASDATFDILRVQLAEDEPW 146 (170)
T ss_pred hCCCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCCCcccchHHHHHHHHhhhCCc
Confidence 34677889987777666655444321 224445889999999999999995433344566655544444433
No 184
>PRK05439 pantothenate kinase; Provisional
Probab=99.12 E-value=1.1e-09 Score=84.13 Aligned_cols=40 Identities=25% Similarity=0.353 Sum_probs=31.6
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHHHhC-------CceechhHHH
Q 029287 5 GGKGPFICFVLGGPGSGKGTQCAKIVKNYG-------LTHLSAGELL 44 (196)
Q Consensus 5 ~~~~~~~i~i~G~~GsGKST~~~~L~~~~~-------~~~i~~~~~~ 44 (196)
..+.|++|+|.|++||||||+++.|++.++ ...++.|+++
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 456789999999999999999999998663 3355666554
No 185
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.12 E-value=9.8e-10 Score=83.61 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=26.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh---CCceechhHH
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNY---GLTHLSAGEL 43 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~---~~~~i~~~~~ 43 (196)
+++|.|++||||||+++.|+..+ +..++..+++
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~ 36 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDY 36 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECccc
Confidence 47899999999999999999876 3445666655
No 186
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=99.11 E-value=5.5e-09 Score=76.72 Aligned_cols=158 Identities=14% Similarity=0.244 Sum_probs=93.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhC-----CceechhHHHHHHHhcC---------ChhhHHHHHHhhcCCCCCHHH
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYG-----LTHLSAGELLRREIASN---------SEYGTTILNTIKEGKIVPSEV 72 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~-----~~~i~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~ 72 (196)
.+..+|++.|.|+.|||++++.|.+.+. ..+++.|++-|+..... .+.+..+++.+. ..
T Consensus 10 ~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a-------~~ 82 (222)
T PF01591_consen 10 AGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIA-------KE 82 (222)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHH-------HH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHH-------HH
Confidence 4558899999999999999999998873 44678888877654431 222333333332 23
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeec---ChHHHHHHHhhccCC----CC---CCcHH
Q 029287 73 TVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDC---PEEEMVNRVLNRNEG----RV---DDNID 142 (196)
Q Consensus 73 ~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~---~~~~~~~Rl~~r~~~----~~---~~~~~ 142 (196)
..+.+...+...+++..|.|+--.+...|..+...+....--++|+++ +++.+.+.+...... .. +...+
T Consensus 83 ~l~dl~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~spDY~~~~~e~A~~ 162 (222)
T PF01591_consen 83 ALEDLIEWLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNSPDYKGMDPEEAIE 162 (222)
T ss_dssp HHHHHHHHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTSGGGTTS-HHHHHH
T ss_pred HHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCcccccCCHHHHHH
Confidence 456667777766778889998888888777777765444455688877 666777676654322 11 11346
Q ss_pred HHHHHHHHHHhchHhHHHHHHhcCcEEEE
Q 029287 143 TVRKRLQVFKALNLPVINYYARRGKLYTI 171 (196)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 171 (196)
.+.+|++.|+....++-+...+...++.+
T Consensus 163 Df~~RI~~Ye~~YEpl~~e~d~~lsyIKi 191 (222)
T PF01591_consen 163 DFKKRIEHYEKVYEPLDEEEDEDLSYIKI 191 (222)
T ss_dssp HHHHHHHHHHTT-----TTTTTTSEEEEE
T ss_pred HHHHHHHhhcccccccccccccCceEEEE
Confidence 67788999998877775332334455553
No 187
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.11 E-value=4.2e-10 Score=91.48 Aligned_cols=171 Identities=17% Similarity=0.205 Sum_probs=103.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCc-eechhHHH----------H---H----------------HHhcCChhhHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLT-HLSAGELL----------R---R----------------EIASNSEYGTTIL 59 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~-~i~~~~~~----------~---~----------------~~~~~~~~~~~~~ 59 (196)
-+++|.|-|||||||++..|...+... .+..|.++ . + .+.+....+..+.
T Consensus 36 E~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~ 115 (539)
T COG1123 36 EILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIR 115 (539)
T ss_pred cEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHH
Confidence 488999999999999999999444221 11122221 0 0 1112223566677
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHhcCCC-CcEEEeCCCC----CHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc-
Q 029287 60 NTIKEGKIVPSEVTVSLIQKEMESSDS-KKFLIDGFPR----SEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN- 133 (196)
Q Consensus 60 ~~l~~~~~~~~~~~~~~i~~~l~~~~~-~~~iid~~~~----~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~- 133 (196)
+.+..+.............+.+...+- .....+.||+ ++.|++.++.++..+|++ +.+|+|+..+.--..+.-
T Consensus 116 E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~L-LIaDEPTTaLDvt~q~qIL 194 (539)
T COG1123 116 EALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKL-LIADEPTTALDVTTQAQIL 194 (539)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCE-EEECCCccccCHHHHHHHH
Confidence 777655444344444445555553221 1111167776 599999999999999999 779999932222111110
Q ss_pred ----CCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHHHHHH
Q 029287 134 ----EGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQVRAV 187 (196)
Q Consensus 134 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~i~~~ 187 (196)
.-..+.+.. ..|.+|+...+.+++++..|+. |...++.+++++.-.+-
T Consensus 195 ~llk~l~~e~g~a------~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~hp 249 (539)
T COG1123 195 DLLKDLQRELGMA------VLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQHP 249 (539)
T ss_pred HHHHHHHHHcCcE------EEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhccCCc
Confidence 000001122 2688899999999999776665 77788999998775433
No 188
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.10 E-value=9.4e-11 Score=95.49 Aligned_cols=169 Identities=18% Similarity=0.223 Sum_probs=88.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHH------hcCChhhHHHHHHhhcCC---CCCHHHHHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREI------ASNSEYGTTILNTIKEGK---IVPSEVTVSLIQKE 80 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~l~~~~---~~~~~~~~~~i~~~ 80 (196)
-+++|.|++||||||++++|+ |....+.|.+..... .........+.+.+.... ..........+...
T Consensus 51 EivgIiGpNGSGKSTLLkiLa---GLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~el 127 (549)
T PRK13545 51 EIVGIIGLNGSGKSTLSNLIA---GVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEI 127 (549)
T ss_pred CEEEEEcCCCCCHHHHHHHHh---CCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHH
Confidence 478999999999999999999 776555554321100 000011112333332110 11222222222233
Q ss_pred HhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH-----HHHHHH
Q 029287 81 MESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK-----RLQVFK 152 (196)
Q Consensus 81 l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~-----~~~~~~ 152 (196)
+...+-. ..-+..++.++.|++.+++++...|++ ++||+|+..+...-... -.+.+.+ ....+.
T Consensus 128 Le~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~L-LLLDEPTsgLD~~sr~~-------LlelL~el~~~G~TIIIV 199 (549)
T PRK13545 128 IEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDI-LVIDEALSVGDQTFTKK-------CLDKMNEFKEQGKTIFFI 199 (549)
T ss_pred HHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCE-EEEECCcccCCHHHHHH-------HHHHHHHHHhCCCEEEEE
Confidence 3321111 112456778899999999999999999 77999993222111110 0000110 011345
Q ss_pred hchHhHHHHHHhcCcEEE---EeCCCCHhHHHHHHHHHHH
Q 029287 153 ALNLPVINYYARRGKLYT---INAVGTVDEIFEQVRAVFA 189 (196)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~i~~~i~ 189 (196)
+|....+..++++..++. +...++++++.......++
T Consensus 200 SHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~~~~~ 239 (549)
T PRK13545 200 SHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDEFLK 239 (549)
T ss_pred ECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhHHHHHH
Confidence 666666666666433332 3345677877766555444
No 189
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.10 E-value=8.2e-10 Score=84.32 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=24.9
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 6 GKGPFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
.+.|++|+|.|++||||||+++.|...+
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999887665
No 190
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.10 E-value=1.4e-10 Score=90.99 Aligned_cols=165 Identities=16% Similarity=0.238 Sum_probs=85.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------------HHHHhcCChh-----hHHHHHHhhcCC-
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------------RREIASNSEY-----GTTILNTIKEGK- 66 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------------~~~~~~~~~~-----~~~~~~~l~~~~- 66 (196)
-+++|.|++||||||++++|+ |+...+.|.+. ++.+...++. ..++.+++..+.
T Consensus 32 ei~gIiG~sGaGKSTLlr~I~---gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~ 108 (343)
T TIGR02314 32 QIYGVIGASGAGKSTLIRCVN---LLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLE 108 (343)
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHH
Confidence 478999999999999999999 76655544331 1111111110 112223222110
Q ss_pred --CCCHHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcH
Q 029287 67 --IVPSEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNI 141 (196)
Q Consensus 67 --~~~~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~ 141 (196)
..+.......+.+.++...-..+ -...++.++.|++.+++++...|++ +++|+|+.-+...-... ..+-.
T Consensus 109 ~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~i-LLlDEPts~LD~~t~~~----i~~lL 183 (343)
T TIGR02314 109 LDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKV-LLCDEATSALDPATTQS----ILELL 183 (343)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCE-EEEeCCcccCCHHHHHH----HHHHH
Confidence 11222222233344443222221 1234556799999999999999999 77999993222211111 00000
Q ss_pred HHHHH---HHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHH
Q 029287 142 DTVRK---RLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFE 182 (196)
Q Consensus 142 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~ 182 (196)
..+.+ ....+.+|....+..++++..++. |...+++++++.
T Consensus 184 ~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 184 KEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 00110 012455677777777777544442 445567777753
No 191
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.10 E-value=8.2e-10 Score=76.50 Aligned_cols=112 Identities=21% Similarity=0.243 Sum_probs=63.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH--------------HhcCCh----hhHHHHHHhhcCC----C
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE--------------IASNSE----YGTTILNTIKEGK----I 67 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~--------------~~~~~~----~~~~~~~~l~~~~----~ 67 (196)
-+|+|+||+||||||+.++++ .+...+.|.++++. ++...+ ++.++.+++.... .
T Consensus 30 e~iaitGPSG~GKStllk~va---~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~r 106 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVA---SLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNR 106 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHH---hccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccchHHhcc
Confidence 378899999999999999999 66555666554332 221111 1222222221110 0
Q ss_pred CCHHHHHHHHHHHHhcCCCC-cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287 68 VPSEVTVSLIQKEMESSDSK-KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM 125 (196)
Q Consensus 68 ~~~~~~~~~i~~~l~~~~~~-~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~ 125 (196)
-++......+.........- ..=+..++.+..|+.++.+.+...|++ ++||+++.-+
T Consensus 107 r~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~I-LLLDE~TsAL 164 (223)
T COG4619 107 RPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKI-LLLDEITSAL 164 (223)
T ss_pred CCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCce-EEecCchhhc
Confidence 11121122222222221110 011445778899999999999999998 8899998544
No 192
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.10 E-value=5.1e-09 Score=85.93 Aligned_cols=100 Identities=22% Similarity=0.383 Sum_probs=73.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCC
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDS 86 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~ 86 (196)
..+.+|++.|+|||||||+++.+++..|+.+++.|++-. .......+.+.+.. +
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~------------------------~~~~~~~a~~~L~~--G 420 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGS------------------------TQNCLTACERALDQ--G 420 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHHH------------------------HHHHHHHHHHHHhC--C
Confidence 456788999999999999999999999999999876510 01223344555553 5
Q ss_pred CcEEEeCCCCCHHHHH---HHHHHhCCCCcEEEEeecChHHHHHHHhhcc
Q 029287 87 KKFLIDGFPRSEENRA---AFERIMGAEPDIVLFFDCPEEEMVNRVLNRN 133 (196)
Q Consensus 87 ~~~iid~~~~~~~~~~---~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~ 133 (196)
..+|+|.-.....++. .+++..+. +-..+++++|.+++.+|...|.
T Consensus 421 ~sVVIDaTn~~~~~R~~~i~lAk~~gv-~v~~i~~~~p~e~~~~Rn~~R~ 469 (526)
T TIGR01663 421 KRCAIDNTNPDAASRAKFLQCARAAGI-PCRCFLFNAPLAQAKHNIAFRE 469 (526)
T ss_pred CcEEEECCCCCHHHHHHHHHHHHHcCC-eEEEEEeCCCHHHHHHHHHhhc
Confidence 6788998776654444 44444543 4456899999999999999884
No 193
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.10 E-value=6.7e-10 Score=86.89 Aligned_cols=166 Identities=22% Similarity=0.270 Sum_probs=85.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------------HHHHhcCChh-------hHHHHHHhh--
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------------RREIASNSEY-------GTTILNTIK-- 63 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------------~~~~~~~~~~-------~~~~~~~l~-- 63 (196)
-+++|.|++||||||++++|+ |+...+.|.+. ++.+....+. ..++.+.+.
T Consensus 48 e~~~lvG~sGsGKSTLlk~i~---Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~ 124 (331)
T PRK15079 48 ETLGVVGESGCGKSTFARAII---GLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEP 124 (331)
T ss_pred CEEEEECCCCCCHHHHHHHHH---CCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHH
Confidence 378999999999999999999 65544333221 1111111110 111222221
Q ss_pred ---cCCCCCHHHHHHHHHHHHhcCCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCC
Q 029287 64 ---EGKIVPSEVTVSLIQKEMESSDSKKFLIDG----FPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGR 136 (196)
Q Consensus 64 ---~~~~~~~~~~~~~i~~~l~~~~~~~~iid~----~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~ 136 (196)
.+...........+.+.+....-..-+.+. ++.++.|++.++.++...|++ +++|+|+.-+..-....
T Consensus 125 l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~l-lilDEPts~LD~~~~~~---- 199 (331)
T PRK15079 125 LRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKL-IICDEPVSALDVSIQAQ---- 199 (331)
T ss_pred HHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCE-EEEeCCCccCCHHHHHH----
Confidence 111122222223333333322211112344 455699999999999999999 77999993222211111
Q ss_pred CCCcHHHHHH---HHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287 137 VDDNIDTVRK---RLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ 183 (196)
Q Consensus 137 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~ 183 (196)
..+-...+.+ ....+.+|+...+..++++..++. |...++.+++++.
T Consensus 200 i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~i~~~ 252 (331)
T PRK15079 200 VVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHN 252 (331)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcC
Confidence 0000011111 012566787777777777544442 4445677777643
No 194
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.10 E-value=3.7e-10 Score=98.64 Aligned_cols=112 Identities=23% Similarity=0.331 Sum_probs=71.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh----CCceechhHH-------HHHHHhcCCh----hhHHHHHHhhcCCCCC-HHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY----GLTHLSAGEL-------LRREIASNSE----YGTTILNTIKEGKIVP-SEVT 73 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~----~~~~i~~~~~-------~~~~~~~~~~----~~~~~~~~l~~~~~~~-~~~~ 73 (196)
..++|.|++||||||+.++|.+.| |-..++..++ +|..+....+ +..++.+++..|.+.. ....
T Consensus 380 ~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i 459 (1228)
T KOG0055|consen 380 QTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEI 459 (1228)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHH
Confidence 578999999999999999999887 4444443332 3443333332 3445778888776432 2222
Q ss_pred HHHH-----HHHHhc-C-CCCcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 74 VSLI-----QKEMES-S-DSKKFLIDG---FPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 74 ~~~i-----~~~l~~-~-~~~~~iid~---~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.+.. .+.+.. . +.+.++.++ ++.+++||+++++++...|.+ ++||+++
T Consensus 460 ~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~I-LLLDEaT 517 (1228)
T KOG0055|consen 460 EEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKI-LLLDEAT 517 (1228)
T ss_pred HHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCE-EEecCcc
Confidence 1111 111111 1 223444443 667899999999999999998 8899988
No 195
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.10 E-value=4.7e-10 Score=89.04 Aligned_cols=166 Identities=17% Similarity=0.241 Sum_probs=87.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH------------HHHhcCCh-----hhHHHHHHhhcCC---CCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR------------REIASNSE-----YGTTILNTIKEGK---IVP 69 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~------------~~~~~~~~-----~~~~~~~~l~~~~---~~~ 69 (196)
-+++|.|++||||||++++|+ |+...+.|.+.. +.+....+ ...++.+++..+. ...
T Consensus 30 e~~~l~G~nGsGKSTLL~~ia---Gl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~ 106 (369)
T PRK11000 30 EFVVFVGPSGCGKSTLLRMIA---GLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAK 106 (369)
T ss_pred CEEEEECCCCCcHHHHHHHHh---CCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCC
Confidence 478999999999999999999 766555444321 11111111 0112333333211 112
Q ss_pred HHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH
Q 029287 70 SEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK 146 (196)
Q Consensus 70 ~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~ 146 (196)
.......+.+.+...+-..+ -...++.++.|++.+++++...|++ ++||+|+..+....... ..+....+.+
T Consensus 107 ~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~l-LLLDEPts~LD~~~~~~----l~~~L~~l~~ 181 (369)
T PRK11000 107 KEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV-FLLDEPLSNLDAALRVQ----MRIEISRLHK 181 (369)
T ss_pred HHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCcccCCHHHHHH----HHHHHHHHHH
Confidence 22222233333333222111 1344667799999999999999999 88999994433322221 0000111111
Q ss_pred ---HHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287 147 ---RLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ 183 (196)
Q Consensus 147 ---~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~ 183 (196)
....+.+|....+..++++..++. |...++++++++.
T Consensus 182 ~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 182 RLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred HhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 012456677766666666433332 3345677777654
No 196
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.09 E-value=5.3e-11 Score=88.25 Aligned_cols=167 Identities=20% Similarity=0.314 Sum_probs=92.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH---------------HHHhcCCh------hhHHHHHHhhcC---
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR---------------REIASNSE------YGTTILNTIKEG--- 65 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~---------------~~~~~~~~------~~~~~~~~l~~~--- 65 (196)
-.++|.|++||||||+++.|. |+.....|.+.. +......+ ...++.+.+..|
T Consensus 31 e~~~i~G~nGsGKSTL~~~l~---GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n 107 (235)
T COG1122 31 ERVLLIGPNGSGKSTLLKLLN---GLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLEN 107 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHc---CcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhh
Confidence 478889999999999999999 876665554411 11111100 122233333332
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHH
Q 029287 66 KIVPSEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNID 142 (196)
Q Consensus 66 ~~~~~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~ 142 (196)
..++.......+.+++........ -.-.++.++.|+++++..+...|++ ++||+|+.-+..+-.+. ......
T Consensus 108 ~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~i-liLDEPta~LD~~~~~~----l~~~l~ 182 (235)
T COG1122 108 LGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEI-LLLDEPTAGLDPKGRRE----LLELLK 182 (235)
T ss_pred cCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCE-EEEcCCCCCCCHHHHHH----HHHHHH
Confidence 223344455566666665443322 1333556799999999999999999 77999993222221111 000001
Q ss_pred HHHHH---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHHH
Q 029287 143 TVRKR---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQV 184 (196)
Q Consensus 143 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~i 184 (196)
.+.+. .....+|+...+..+++...++. +..++++.++++..
T Consensus 183 ~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 183 KLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred HHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhhh
Confidence 11110 11345566666666666443332 44567788887664
No 197
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=99.09 E-value=4.6e-09 Score=74.35 Aligned_cols=154 Identities=14% Similarity=0.157 Sum_probs=82.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhC--CceechhHHHHHHHhcCCh---h-----------hHHHHHHhhcCCCCCHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYG--LTHLSAGELLRREIASNSE---Y-----------GTTILNTIKEGKIVPSEVT 73 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~--~~~i~~~~~~~~~~~~~~~---~-----------~~~~~~~l~~~~~~~~~~~ 73 (196)
.+|+|-|+|-|||||+++.|.+.+. +.++..|.+.... .+... . +......+ ...
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~ 72 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMM-PPGRYRPGDGLEPAGDRPDGGPLFRRLY--------AAM 72 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS--GGGGTSTTSEEEETTSEEE-HHHHHHH--------HHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhc-CcccccCCccccccccCCchhHHHHHHH--------HHH
Confidence 4789999999999999999999985 4567776665432 21100 0 01111100 111
Q ss_pred HHHHHHHHhcCCCCcEEEeCCCCCHHH-HHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHH
Q 029287 74 VSLIQKEMESSDSKKFLIDGFPRSEEN-RAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFK 152 (196)
Q Consensus 74 ~~~i~~~l~~~~~~~~iid~~~~~~~~-~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~ 152 (196)
+..+..... .+..+|+|....+... ...+.+.+...|-++|-+.||.+++.+|-..|. +|.. .. .+.+.. .
T Consensus 73 ~~~iaa~a~--aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~Rg-DR~~-G~--a~~q~~--~ 144 (174)
T PF07931_consen 73 HAAIAAMAR--AGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARG-DRPI-GL--AAWQAE--H 144 (174)
T ss_dssp HHHHHHHHH--TT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHT-SSST-TH--HHHHTT--G
T ss_pred HHHHHHHHh--CCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcC-Ccch-HH--HHHHHh--h
Confidence 222333333 3567889987766554 444446676677777889999999999988883 3322 21 111111 1
Q ss_pred hchHhHHHHHHhcCcEEEEeCC-CCHhHHHHHHHHHH
Q 029287 153 ALNLPVINYYARRGKLYTINAV-GTVDEIFEQVRAVF 188 (196)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~I~~~-~~~~~v~~~i~~~i 188 (196)
-|. ....-+.||++ .++++..+.|.+.+
T Consensus 145 Vh~--------~~~YDleVDTs~~sp~ecA~~I~~~~ 173 (174)
T PF07931_consen 145 VHE--------GGRYDLEVDTSATSPEECAREILARL 173 (174)
T ss_dssp GGT--------T---SEEEETTSS-HHHHHHHHHTT-
T ss_pred ccc--------CCCCCEEEECCCCCHHHHHHHHHHHh
Confidence 111 11122568865 58999988876654
No 198
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.09 E-value=3.8e-11 Score=84.94 Aligned_cols=95 Identities=13% Similarity=0.274 Sum_probs=63.9
Q ss_pred HHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh-----------HHHHHHHhhccCCCCCCcHH
Q 029287 74 VSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE-----------EEMVNRVLNRNEGRVDDNID 142 (196)
Q Consensus 74 ~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~-----------~~~~~Rl~~r~~~~~~~~~~ 142 (196)
.+.+.......+........++++++||+.+...+.+.|.+ ++||+|. ..+..++..+ . .
T Consensus 128 ide~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~l-LLlDEPvAGMTd~Et~~taeLl~~la~~----h----s 198 (249)
T COG4674 128 IDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKL-LLLDEPVAGMTDAETEKTAELLKSLAGK----H----S 198 (249)
T ss_pred HHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcE-EEecCccCCCcHHHHHHHHHHHHHHhcC----c----e
Confidence 44444444444445555666889999999999999999999 8899997 2223333222 0 1
Q ss_pred HHHHHHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287 143 TVRKRLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ 183 (196)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~ 183 (196)
....+|+......++++..++. |-++++.++|.+.
T Consensus 199 ------ilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~d 236 (249)
T COG4674 199 ------ILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQND 236 (249)
T ss_pred ------EEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcC
Confidence 1334566677777787766665 6789999998754
No 199
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=99.09 E-value=2e-08 Score=76.66 Aligned_cols=43 Identities=21% Similarity=0.427 Sum_probs=34.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHh
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIA 49 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~ 49 (196)
+.|++|+|.|++||||||++..|+++||+..+-..|.+++.+.
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R 132 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMR 132 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHH
Confidence 4689999999999999999999999999885444566664443
No 200
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.09 E-value=3.2e-10 Score=95.41 Aligned_cols=108 Identities=17% Similarity=0.217 Sum_probs=69.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCC-CCH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKI-VPS 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~-~~~ 70 (196)
-.++|+|++||||||+++.|...+ .+.|.+ +++.+...++ +..++++++..+.+ ..+
T Consensus 377 ~~vaIvG~SGsGKSTL~~lL~g~~----p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~ 452 (588)
T PRK11174 377 QRIALVGPSGAGKTSLLNALLGFL----PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASD 452 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC----CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCH
Confidence 578999999999999999999444 233322 3344443333 24457888877644 444
Q ss_pred HHHHHHHH-----HHHhc-CC-CCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 71 EVTVSLIQ-----KEMES-SD-SKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 71 ~~~~~~i~-----~~l~~-~~-~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+...+.+. +.+.. +. .+..+-+ .++.+++|++++++++..+|++ ++||+|+
T Consensus 453 eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~I-liLDE~T 513 (588)
T PRK11174 453 EQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQL-LLLDEPT 513 (588)
T ss_pred HHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCE-EEEeCCc
Confidence 43333222 12221 11 2333333 3667899999999999999999 7799998
No 201
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.08 E-value=4.3e-10 Score=88.76 Aligned_cols=165 Identities=24% Similarity=0.315 Sum_probs=85.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH------------------HHHHhcCCh-----hhHHHHHHhhcCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL------------------RREIASNSE-----YGTTILNTIKEGK 66 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~------------------~~~~~~~~~-----~~~~~~~~l~~~~ 66 (196)
-+++|.|++||||||++++|. |....+.|++. ++.+....+ ...++.+++..+.
T Consensus 20 ei~~l~G~sGsGKSTLLr~L~---Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~ 96 (363)
T TIGR01186 20 EIFVIMGLSGSGKSTTVRMLN---RLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGP 96 (363)
T ss_pred CEEEEECCCCChHHHHHHHHh---CCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHH
Confidence 478999999999999999999 66554444331 111111110 0112233332111
Q ss_pred ---CCCHHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCc
Q 029287 67 ---IVPSEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDN 140 (196)
Q Consensus 67 ---~~~~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~ 140 (196)
..........+.+.+...+-..+ ....++.++.|++.+++++...|++ +++|+|+.-+..-..+. ..+-
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~i-LLlDEP~saLD~~~r~~----l~~~ 171 (363)
T TIGR01186 97 ELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDI-LLMDEAFSALDPLIRDS----MQDE 171 (363)
T ss_pred HHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCcccCCHHHHHH----HHHH
Confidence 11222223334444443222222 1233556799999999999999998 88999992221111111 0000
Q ss_pred HHHHHH---HHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHH
Q 029287 141 IDTVRK---RLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFE 182 (196)
Q Consensus 141 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~ 182 (196)
...+.+ +...+.+|+...+..++++..++. |...++++++..
T Consensus 172 l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 172 LKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 111111 122566677766666666443332 444567777654
No 202
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=99.08 E-value=4.4e-10 Score=67.61 Aligned_cols=60 Identities=25% Similarity=0.460 Sum_probs=44.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh---CCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCC
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNY---GLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSK 87 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~ 87 (196)
+|+|.|++||||||+++.|++.+ +..+++.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~----------------------------------------------- 33 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE----------------------------------------------- 33 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE-----------------------------------------------
Confidence 47889999999999999999885 2222221
Q ss_pred cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeec
Q 029287 88 KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDC 120 (196)
Q Consensus 88 ~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~ 120 (196)
.+|+||+.....++. ......+|+.||+|+
T Consensus 34 ~~I~eg~~~~~~~~~---~~~~~~~d~~Iyld~ 63 (69)
T cd02019 34 IVILEGLYASYKSRD---ARIRDLADLKIYLDA 63 (69)
T ss_pred EEEecchhhhhhhHH---hhccccccEEEEEEe
Confidence 788999876554433 245568899999987
No 203
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.08 E-value=2.1e-10 Score=86.14 Aligned_cols=111 Identities=17% Similarity=0.217 Sum_probs=62.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH--HhcCC-----hhhHHHHHHhhcCCC-C-CHHHHHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE--IASNS-----EYGTTILNTIKEGKI-V-PSEVTVSLIQKE 80 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~--~~~~~-----~~~~~~~~~l~~~~~-~-~~~~~~~~i~~~ 80 (196)
-+++|.|++||||||++++|+ |....+.|.+.... +...+ ....++.+++..... . ........+.+.
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~---G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~ 102 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLA---GVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKP 102 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHH
Confidence 488999999999999999999 77655555442211 01000 011123333321100 0 001111222222
Q ss_pred HhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 81 MESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 81 l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
+.......--+..++.++.|++.++.++...|++ ++||+|+..
T Consensus 103 l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~l-lllDEPt~~ 145 (246)
T cd03237 103 LQIEQILDREVPELSGGELQRVAIAACLSKDADI-YLLDEPSAY 145 (246)
T ss_pred cCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCccc
Confidence 2221111112445778899999999999999999 779999943
No 204
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.07 E-value=5.7e-10 Score=86.39 Aligned_cols=83 Identities=18% Similarity=0.314 Sum_probs=47.4
Q ss_pred eCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHH-----HHHHHhchHhHHHHHHhcC
Q 029287 92 DGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKR-----LQVFKALNLPVINYYARRG 166 (196)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 166 (196)
..++.++.|++.++.++...|++ ++||+|+..+...-... -.+.+.+. ...+.+|+...+..++++.
T Consensus 164 ~~LSgGqkqrvalA~aL~~~P~l-LlLDEPt~~LD~~~~~~-------l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv 235 (305)
T PRK13651 164 FELSGGQKRRVALAGILAMEPDF-LVFDEPTAGLDPQGVKE-------ILEIFDNLNKQGKTIILVTHDLDNVLEWTKRT 235 (305)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCE-EEEeCCCCCCCHHHHHH-------HHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEE
Confidence 34666799999999999999999 77999993222111111 00111110 1145566666666666643
Q ss_pred cEEE---EeCCCCHhHHHH
Q 029287 167 KLYT---INAVGTVDEIFE 182 (196)
Q Consensus 167 ~~~~---I~~~~~~~~v~~ 182 (196)
.++. |...+++++++.
T Consensus 236 ~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 236 IFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred EEEECCEEEEECCHHHHhc
Confidence 3332 334566777654
No 205
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.07 E-value=1.4e-10 Score=92.54 Aligned_cols=162 Identities=20% Similarity=0.328 Sum_probs=85.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh-----hhHHHHHHhhcCC----
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE-----YGTTILNTIKEGK---- 66 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~-----~~~~~~~~l~~~~---- 66 (196)
-+++|.||+||||||+++.|+ |+...+.|.+. ++.+....+ ......+++..+.
T Consensus 30 eiv~liGpNGaGKSTLLk~La---Gll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~ 106 (402)
T PRK09536 30 SLVGLVGPNGAGKTTLLRAIN---GTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHR 106 (402)
T ss_pred CEEEEECCCCchHHHHHHHHh---cCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhc
Confidence 478999999999999999999 65544444221 111111111 1122334333221
Q ss_pred -CCC--HHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCc
Q 029287 67 -IVP--SEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDN 140 (196)
Q Consensus 67 -~~~--~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~ 140 (196)
... .......+.+.++..+... --+..++.++.|++.+++++...|++ ++||+|+.-+--.-... -
T Consensus 107 ~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~i-LLLDEPtsgLD~~~~~~-------l 178 (402)
T PRK09536 107 SRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPV-LLLDEPTASLDINHQVR-------T 178 (402)
T ss_pred ccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE-EEEECCcccCCHHHHHH-------H
Confidence 011 1112233344444322211 12455777899999999999999999 78999993222211111 0
Q ss_pred HHHHHH-----HHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHH
Q 029287 141 IDTVRK-----RLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFE 182 (196)
Q Consensus 141 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~ 182 (196)
.+.+.+ ......+|....+..++++.-++. +...++++++..
T Consensus 179 ~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 179 LELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 011111 011344566677777777543332 445677887653
No 206
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.07 E-value=1.8e-10 Score=90.31 Aligned_cols=163 Identities=16% Similarity=0.198 Sum_probs=85.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCCh-----hhHHHHHHhhc-C--CCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNSE-----YGTTILNTIKE-G--KIV 68 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~~-----~~~~~~~~l~~-~--~~~ 68 (196)
-+++|.||+||||||+.++|+ |....+.|++. ++.+...++ ...+..+++.. + ...
T Consensus 68 ei~gLlGpNGaGKSTLl~~L~---Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~ 144 (340)
T PRK13536 68 ECFGLLGPNGAGKSTIARMIL---GMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGM 144 (340)
T ss_pred CEEEEECCCCCCHHHHHHHHH---cCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCC
Confidence 588999999999999999999 76554444321 111111111 11122333321 0 011
Q ss_pred CHHHHHHHH---HHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHH
Q 029287 69 PSEVTVSLI---QKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVR 145 (196)
Q Consensus 69 ~~~~~~~~i---~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~ 145 (196)
........+ .+.+.......--+..++.++.|++.++.++...|++ ++||+|+.-+.-.-... -.+.+.
T Consensus 145 ~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~l-LiLDEPt~gLD~~~r~~-------l~~~l~ 216 (340)
T PRK13536 145 STREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQL-LILDEPTTGLDPHARHL-------IWERLR 216 (340)
T ss_pred CHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCE-EEEECCCCCCCHHHHHH-------HHHHHH
Confidence 111111222 2233322211222567888999999999999999999 77999992221111100 000111
Q ss_pred H-----HHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287 146 K-----RLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ 183 (196)
Q Consensus 146 ~-----~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~ 183 (196)
+ ....+.+|....++.++++..++. |...++++++.+.
T Consensus 217 ~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 217 SLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 1 011455566666777776544432 4455677776543
No 207
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.07 E-value=5.4e-10 Score=95.98 Aligned_cols=109 Identities=22% Similarity=0.331 Sum_probs=68.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCC-CCH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKI-VPS 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~-~~~ 70 (196)
-.++|+|++||||||+++.|+ |....+.|.+ +++.+...++ ...++++++..+.+ .++
T Consensus 506 e~vaIvG~sGsGKSTLlklL~---gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~ 582 (710)
T TIGR03796 506 QRVALVGGSGSGKSTIAKLVA---GLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPD 582 (710)
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCH
Confidence 478999999999999999999 4443333322 2344333332 23457777765533 344
Q ss_pred HHHHHHHHH-----HHhc-C-CCCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 71 EVTVSLIQK-----EMES-S-DSKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 71 ~~~~~~i~~-----~l~~-~-~~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+...+.+.. .+.. . +.+..+-+ .++.++.|++++++++..+|++ ++||+|+
T Consensus 583 ~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~i-liLDEpt 643 (710)
T TIGR03796 583 ADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSI-LILDEAT 643 (710)
T ss_pred HHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCE-EEEECcc
Confidence 433332221 1211 1 12333333 3667899999999999999999 7799999
No 208
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=3.7e-10 Score=81.85 Aligned_cols=163 Identities=20% Similarity=0.307 Sum_probs=88.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCc--eechhHH---------------HHHHHh-----cCChhhHHHHHHhh----
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLT--HLSAGEL---------------LRREIA-----SNSEYGTTILNTIK---- 63 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~--~i~~~~~---------------~~~~~~-----~~~~~~~~~~~~l~---- 63 (196)
-+-+|+||+||||||++..|+ |.+ .++.|++ .+..+. +..-.|.++.++++
T Consensus 31 EvhaiMGPNGsGKSTLa~~i~---G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n 107 (251)
T COG0396 31 EVHAIMGPNGSGKSTLAYTIM---GHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMN 107 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHH
Confidence 467889999999999999999 644 2333333 222111 11112333333332
Q ss_pred cCCCCC--HHHHHHHHHHHHhcCCC-----CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH-----------HH
Q 029287 64 EGKIVP--SEVTVSLIQKEMESSDS-----KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE-----------EM 125 (196)
Q Consensus 64 ~~~~~~--~~~~~~~i~~~l~~~~~-----~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~-----------~~ 125 (196)
...... .......+.+.+....- .-.+-.+|+.+...+..+.+.+...|++ ..||+|.. ..
T Consensus 108 ~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl-~ILDE~DSGLDIdalk~V~~~ 186 (251)
T COG0396 108 ARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKL-AILDEPDSGLDIDALKIVAEG 186 (251)
T ss_pred hhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCE-EEecCCCcCccHHHHHHHHHH
Confidence 111110 12223333333332211 2235778999999999999999999999 56999882 12
Q ss_pred HHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEE-----EeCCCCHhHHHHHHHHH-HHhh
Q 029287 126 VNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYT-----INAVGTVDEIFEQVRAV-FAAL 191 (196)
Q Consensus 126 ~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----I~~~~~~~~v~~~i~~~-i~~~ 191 (196)
++++... .... ...+|...+.++.. +..+++ |..++++ ++.+++++. +.++
T Consensus 187 i~~lr~~-------~~~~------liITHy~rll~~i~-pD~vhvl~~GrIv~sG~~-el~~~le~~gy~~~ 243 (251)
T COG0396 187 INALREE-------GRGV------LIITHYQRLLDYIK-PDKVHVLYDGRIVKSGDP-ELAEELEEKGYDWL 243 (251)
T ss_pred HHHHhcC-------CCeE------EEEecHHHHHhhcC-CCEEEEEECCEEEecCCH-HHHHHHHHhchHHh
Confidence 2222211 1011 33445555555543 334443 6677888 788887643 4443
No 209
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.06 E-value=1e-09 Score=81.96 Aligned_cols=109 Identities=24% Similarity=0.377 Sum_probs=61.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------------HHHHhcCCh-----hhHHHHHHhhcCC-
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------------RREIASNSE-----YGTTILNTIKEGK- 66 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------------~~~~~~~~~-----~~~~~~~~l~~~~- 66 (196)
-+++|.|++||||||++++|+ |....+.|.+. ++.+...++ ...++.+++..+.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~---G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 103 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIV---GLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLR 103 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHh
Confidence 478999999999999999999 65544433221 111111111 1122333332210
Q ss_pred ---CCCHHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 67 ---IVPSEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 67 ---~~~~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
..........+.+.+...+-..+ -+..++.++.|++.+++++...|++ ++||+|+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~l-lllDEPt 164 (235)
T cd03261 104 EHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPEL-LLYDEPT 164 (235)
T ss_pred hccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE-EEecCCc
Confidence 11222222223333332221111 2344677899999999999999998 7799999
No 210
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.05 E-value=3.1e-10 Score=86.64 Aligned_cols=109 Identities=16% Similarity=0.241 Sum_probs=63.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCChh------hHHHHHHhhcCC---
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSEY------GTTILNTIKEGK--- 66 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~~------~~~~~~~l~~~~--- 66 (196)
-+++|.|++||||||++++|+ |....+.|.+. ++.+....+. ...+.+++..+.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~ 108 (274)
T PRK13647 32 SKTALLGPNGAGKSTLLLHLN---GIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM 108 (274)
T ss_pred CEEEEECCCCCcHHHHHHHHh---cCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc
Confidence 588999999999999999999 65444433221 1112211111 112334333221
Q ss_pred CCCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 67 IVPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 67 ~~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
..........+...+....-.. .....++.++.|++.+++++...|++ ++||+|+
T Consensus 109 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~l-lllDEPt 166 (274)
T PRK13647 109 GLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDV-IVLDEPM 166 (274)
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE-EEEECCC
Confidence 1122222223333343322111 12445777899999999999999999 7799999
No 211
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.05 E-value=1.2e-09 Score=84.49 Aligned_cols=109 Identities=18% Similarity=0.244 Sum_probs=63.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCCh-----hhHHHHHHhhcC---CCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNSE-----YGTTILNTIKEG---KIV 68 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~~-----~~~~~~~~l~~~---~~~ 68 (196)
-+++|.||+||||||++++|+ |....+.|.+. ++.+...++ ......+++... ...
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~---Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~ 105 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIIT---GYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGM 105 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCC
Confidence 488999999999999999999 76555544331 111111111 111233333211 111
Q ss_pred CHHHHHHHHHHHHhc---CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 69 PSEVTVSLIQKEMES---SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 69 ~~~~~~~~i~~~l~~---~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+.......+.+.+.. ......-+..++.++.|++.++.++...|.+ ++||+|+
T Consensus 106 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l-liLDEPt 161 (301)
T TIGR03522 106 KGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKV-LILDEPT 161 (301)
T ss_pred CHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCc
Confidence 212112223333332 2211223566888899999999999999999 7899999
No 212
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.05 E-value=1.1e-09 Score=85.57 Aligned_cols=86 Identities=13% Similarity=0.219 Sum_probs=50.8
Q ss_pred CCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH---HHHHHHhchHhHHHHHHhcCcEE
Q 029287 93 GFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK---RLQVFKALNLPVINYYARRGKLY 169 (196)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 169 (196)
.++.++.|++.++.++...|++ +++|+|+.-+....... ..+-...+.+ ....+.+|+...+..+++...++
T Consensus 153 ~LSgGq~QRv~iArAL~~~P~l-lilDEPts~LD~~~~~~----il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm 227 (326)
T PRK11022 153 QLSGGMSQRVMIAMAIACRPKL-LIADEPTTALDVTIQAQ----IIELLLELQQKENMALVLITHDLALVAEAAHKIIVM 227 (326)
T ss_pred hCCHHHHHHHHHHHHHHhCCCE-EEEeCCCCCCCHHHHHH----HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 3555699999999999999998 77999993222111111 0000001111 01256677777777777755444
Q ss_pred E---EeCCCCHhHHHHH
Q 029287 170 T---INAVGTVDEIFEQ 183 (196)
Q Consensus 170 ~---I~~~~~~~~v~~~ 183 (196)
. |...++.+++++.
T Consensus 228 ~~G~ive~g~~~~~~~~ 244 (326)
T PRK11022 228 YAGQVVETGKAHDIFRA 244 (326)
T ss_pred ECCEEEEECCHHHHhhC
Confidence 3 5566777777654
No 213
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.05 E-value=3.2e-10 Score=95.02 Aligned_cols=112 Identities=21% Similarity=0.323 Sum_probs=72.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCC----ceechhHH-------HHHHHhcCCh----hhHHHHHHhhcCCC-CCHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGL----THLSAGEL-------LRREIASNSE----YGTTILNTIKEGKI-VPSEVT 73 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~----~~i~~~~~-------~~~~~~~~~~----~~~~~~~~l~~~~~-~~~~~~ 73 (196)
-.++|.|++||||||+++.|.+.|.. ..++.-++ +|+.+...++ ...++++++..|.+ ..++.+
T Consensus 356 e~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei 435 (567)
T COG1132 356 EKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEI 435 (567)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHH
Confidence 47889999999999999999977732 22321111 3444443332 34568888888866 355444
Q ss_pred HHHHHHH-----Hhc-CC-CCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 74 VSLIQKE-----MES-SD-SKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 74 ~~~i~~~-----l~~-~~-~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.+....+ +.. ++ .+..+-+ .++.+++|++++++++..+|.+ +.||+++
T Consensus 436 ~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~I-LILDEaT 493 (567)
T COG1132 436 EEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPI-LILDEAT 493 (567)
T ss_pred HHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCE-EEEeccc
Confidence 3333222 222 12 2444432 3666799999999999999988 7799988
No 214
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.05 E-value=9.8e-10 Score=91.37 Aligned_cols=115 Identities=27% Similarity=0.394 Sum_probs=68.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh----CCceech---hHH---HHHHHhcCCh----hhHHHHHHhhcCCC-CCHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY----GLTHLSA---GEL---LRREIASNSE----YGTTILNTIKEGKI-VPSEVTV 74 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~----~~~~i~~---~~~---~~~~~~~~~~----~~~~~~~~l~~~~~-~~~~~~~ 74 (196)
-.++|+|++||||||+++.|...+ |-..++. .++ +++.+...++ +..++++++..+.+ ..++...
T Consensus 362 ~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~ 441 (529)
T TIGR02868 362 ERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELW 441 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHH
Confidence 578999999999999999999444 2112221 122 1222233332 24457888877643 3344333
Q ss_pred HHHHH-----HHhc-CCC-CcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287 75 SLIQK-----EMES-SDS-KKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM 125 (196)
Q Consensus 75 ~~i~~-----~l~~-~~~-~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~ 125 (196)
+.+.. .+.. +++ +..+-+ .++.++.|++++++++..+|++ ++||+|+..+
T Consensus 442 ~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~i-liLDE~TSaL 501 (529)
T TIGR02868 442 AALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPI-LLLDEPTEHL 501 (529)
T ss_pred HHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCE-EEEeCCcccC
Confidence 22221 1111 111 333322 3667799999999999999998 7799998443
No 215
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.04 E-value=2e-09 Score=79.54 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
+|+|.|++||||||+++.|+..+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999887
No 216
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.04 E-value=4.2e-10 Score=87.18 Aligned_cols=109 Identities=18% Similarity=0.255 Sum_probs=61.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCCh-----hhHHHHHHhhc-C--CCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNSE-----YGTTILNTIKE-G--KIV 68 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~~-----~~~~~~~~l~~-~--~~~ 68 (196)
-+++|.|++||||||++++|+ |....+.|++. ++.+...++ ...++.+++.. . ...
T Consensus 31 e~~~l~G~NGaGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 107 (303)
T TIGR01288 31 ECFGLLGPNGAGKSTIARMLL---GMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGM 107 (303)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCC
Confidence 488999999999999999999 65544433321 111111111 11123333321 0 011
Q ss_pred CHHHHHHHHHHHHh---cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 69 PSEVTVSLIQKEME---SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 69 ~~~~~~~~i~~~l~---~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
........+.+.+. ......--+..++.++.|++.++.++...|++ ++||+|+
T Consensus 108 ~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l-llLDEPt 163 (303)
T TIGR01288 108 STREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQL-LILDEPT 163 (303)
T ss_pred CHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCC
Confidence 21111122222333 21111112456778899999999999999999 7899999
No 217
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.04 E-value=2.4e-09 Score=80.33 Aligned_cols=31 Identities=26% Similarity=0.537 Sum_probs=27.2
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
...++.++.|++.+++++...|++ ++||+|+
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~l-lllDEPt 173 (243)
T TIGR02315 143 ADQLSGGQQQRVAIARALAQQPDL-ILADEPI 173 (243)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCE-EEEeCCc
Confidence 345777899999999999999998 7799999
No 218
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.03 E-value=2.8e-10 Score=84.15 Aligned_cols=110 Identities=15% Similarity=0.178 Sum_probs=61.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCCh-----hhHHHHHHhhcC---CCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNSE-----YGTTILNTIKEG---KIV 68 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~~-----~~~~~~~~l~~~---~~~ 68 (196)
-+++|.|++||||||++++|+ |....+.|.+. ++.+....+ ...++.+++... ...
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~ 105 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLT---GELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGL 105 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCC
Confidence 478999999999999999999 66544444321 111111111 011223332211 011
Q ss_pred CHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 69 PSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 69 ~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
+.......+.+.+....-. ..-+..++.++.|++.++.++...|++ ++||+|+.
T Consensus 106 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l-lllDEP~~ 162 (220)
T cd03263 106 PKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSV-LLLDEPTS 162 (220)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCE-EEECCCCC
Confidence 1111112223333321111 112345777899999999999999999 77999993
No 219
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=99.02 E-value=5.6e-09 Score=79.22 Aligned_cols=132 Identities=20% Similarity=0.246 Sum_probs=64.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh---C--CceechhHHHHHHHhc-CChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY---G--LTHLSAGELLRREIAS-NSEYGTTILNTIKEGKIVPSEVTVSLIQKEMES 83 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~---~--~~~i~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~ 83 (196)
.+|+|+|.|||||||+++.|++.+ + ..+++.+.+....-.. ........+. .....+.+.+.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~-----------~l~s~v~r~ls- 69 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARG-----------SLKSAVERALS- 69 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHH-----------HHHHHHHHHHT-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHH-----------HHHHHHHHhhc-
Confidence 478889999999999999999986 2 2334432222010000 0001111111 22344455554
Q ss_pred CCCCcEEEeCCCC--CHH-HHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchH
Q 029287 84 SDSKKFLIDGFPR--SEE-NRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNL 156 (196)
Q Consensus 84 ~~~~~~iid~~~~--~~~-~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~ 156 (196)
....+|+|+.-. ++. +...+++... .+-.+||+++|.+.+.+|=.+|.... .-..+.+......|+..+.
T Consensus 70 -~~~iVI~Dd~nYiKg~RYelyclAr~~~-~~~c~i~~~~~~e~~~~~N~~R~~~~-~~~~e~i~~m~~RfE~P~~ 142 (270)
T PF08433_consen 70 -KDTIVILDDNNYIKGMRYELYCLARAYG-TTFCVIYCDCPLETCLQRNSKRPEPE-RYPEETIDDMIQRFEEPDP 142 (270)
T ss_dssp -T-SEEEE-S---SHHHHHHHHHHHHHTT--EEEEEEEE--HHHHHHHHHHTT-S---S-HHHHHHHHHH---TTS
T ss_pred -cCeEEEEeCCchHHHHHHHHHHHHHHcC-CCEEEEEECCCHHHHHHhhhccCCCC-CCCHHHHHHHHHHhcCCCC
Confidence 347888997433 333 2333444444 44556999999999999999884221 1245666666666666643
No 220
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=1.3e-09 Score=83.82 Aligned_cols=109 Identities=22% Similarity=0.359 Sum_probs=63.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH------------------HHHHhcCChh------hHHHHHHhhcC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL------------------RREIASNSEY------GTTILNTIKEG 65 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~------------------~~~~~~~~~~------~~~~~~~l~~~ 65 (196)
-+++|.|++||||||+++.|+ |....+.|.+. ++.+....+. ...+.+.+..+
T Consensus 33 e~v~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~ 109 (288)
T PRK13643 33 SYTALIGHTGSGKSTLLQHLN---GLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFG 109 (288)
T ss_pred CEEEEECCCCChHHHHHHHHh---cCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHHHHhH
Confidence 478999999999999999999 66554444221 1111111111 11333333222
Q ss_pred C---CCCHHHHHHHHHHHHhcCCCC----cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 66 K---IVPSEVTVSLIQKEMESSDSK----KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 66 ~---~~~~~~~~~~i~~~l~~~~~~----~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
. ..+.......+.+.+...+-. .--...++.++.|++.++.++...|++ ++||+|+
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~i-llLDEPt 172 (288)
T PRK13643 110 PQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEV-LVLDEPT 172 (288)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCE-EEEECCc
Confidence 1 112222233344444322211 112344667799999999999999998 7799999
No 221
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.02 E-value=1.2e-09 Score=82.40 Aligned_cols=31 Identities=23% Similarity=0.554 Sum_probs=27.2
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
...++.++.|++.++.++...|++ ++||+|+
T Consensus 142 ~~~LS~Gq~qrv~la~al~~~p~l-llLDEPt 172 (250)
T PRK11264 142 PRRLSGGQQQRVAIARALAMRPEV-ILFDEPT 172 (250)
T ss_pred hhhCChHHHHHHHHHHHHhcCCCE-EEEeCCC
Confidence 445777899999999999999998 7799999
No 222
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.02 E-value=3e-10 Score=84.87 Aligned_cols=31 Identities=19% Similarity=0.500 Sum_probs=26.9
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+..++.++.|++.+++++...|++ ++||+|+
T Consensus 141 ~~~LSgG~~qrv~la~al~~~p~l-lllDEPt 171 (236)
T cd03219 141 AGELSYGQQRRLEIARALATDPKL-LLLDEPA 171 (236)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCc
Confidence 344677899999999999999998 7799999
No 223
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.02 E-value=3.4e-10 Score=82.83 Aligned_cols=111 Identities=21% Similarity=0.257 Sum_probs=62.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------HHHHhcCChh------hHHHHHHhhcCCCC-C-H
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------RREIASNSEY------GTTILNTIKEGKIV-P-S 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------~~~~~~~~~~------~~~~~~~l~~~~~~-~-~ 70 (196)
-+++|.|++||||||+++.|+ |....+.|.+. ++.+....+. ...+.+++...... . .
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~ 103 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILA---GLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAG 103 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcCcc
Confidence 488999999999999999999 65544433221 1111111111 11334444322111 1 1
Q ss_pred HHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 71 EVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 71 ~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
......+.+.+............++.++.|++.+++++...|++ ++||+|+..
T Consensus 104 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l-lllDEPt~~ 156 (205)
T cd03226 104 NEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDL-LIFDEPTSG 156 (205)
T ss_pred HHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCE-EEEeCCCcc
Confidence 11112222222221111112445777899999999999999998 889999944
No 224
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.01 E-value=1.5e-10 Score=99.16 Aligned_cols=112 Identities=21% Similarity=0.321 Sum_probs=67.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh----CCceechhHH-------HHHHHhcCCh----hhHHHHHHhhcCCC-CCHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY----GLTHLSAGEL-------LRREIASNSE----YGTTILNTIKEGKI-VPSEVT 73 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~----~~~~i~~~~~-------~~~~~~~~~~----~~~~~~~~l~~~~~-~~~~~~ 73 (196)
-.++|+|++||||||+++.|...+ |-..++.-++ +++.+...++ ...++++++..+.. .+++..
T Consensus 508 e~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i 587 (711)
T TIGR00958 508 EVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEI 587 (711)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHH
Confidence 478999999999999999999555 2222221111 2333333222 24457888876643 333333
Q ss_pred HHHHHH-----HHhc-C-CCCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 74 VSLIQK-----EMES-S-DSKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 74 ~~~i~~-----~l~~-~-~~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.+.+.. .+.. . +.+..+-+ .++.+++|++++++++..+|++ ++||+|+
T Consensus 588 ~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~I-LILDEpT 645 (711)
T TIGR00958 588 MAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRV-LILDEAT 645 (711)
T ss_pred HHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCE-EEEEccc
Confidence 222211 1111 1 11223322 3667799999999999999998 7799998
No 225
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.01 E-value=8.2e-10 Score=82.82 Aligned_cols=109 Identities=22% Similarity=0.291 Sum_probs=61.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH---------------HHHHHhcCChh-----hHHHHHHhhcCC---
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL---------------LRREIASNSEY-----GTTILNTIKEGK--- 66 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~---------------~~~~~~~~~~~-----~~~~~~~l~~~~--- 66 (196)
-+++|.|++||||||+++.|+ |....+.|.+ .++.+....+. ...+.+++....
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~ 106 (241)
T PRK10895 30 EIVGLLGPNGAGKTTTFYMVV---GIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIR 106 (241)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhcc
Confidence 488999999999999999999 6654444322 11111111111 112333332211
Q ss_pred -CCCHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 67 -IVPSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 67 -~~~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
..........+.+.+...+-. ..-...++.++.|++.++.++...|++ ++||+|+
T Consensus 107 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l-lllDEPt 165 (241)
T PRK10895 107 DDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKF-ILLDEPF 165 (241)
T ss_pred cccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCc
Confidence 011111112223333321111 112455778899999999999999998 7799999
No 226
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.01 E-value=2.4e-09 Score=80.21 Aligned_cols=31 Identities=23% Similarity=0.458 Sum_probs=27.2
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
...++.++.|++.+++++...|++ ++||+|+
T Consensus 142 ~~~LS~G~~qrv~la~al~~~p~l-lllDEPt 172 (241)
T cd03256 142 ADQLSGGQQQRVAIARALMQQPKL-ILADEPV 172 (241)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCE-EEEeCcc
Confidence 345777899999999999999998 7799999
No 227
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.01 E-value=1.2e-09 Score=93.67 Aligned_cols=109 Identities=22% Similarity=0.320 Sum_probs=68.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCC-CCH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKI-VPS 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~-~~~ 70 (196)
-.++|+|++||||||+++.|...| ..+.|.+ +++.+...++ ...++++++..+.+ ..+
T Consensus 492 ~~iaIvG~sGsGKSTLlklL~gl~---~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~ 568 (694)
T TIGR03375 492 EKVAIIGRIGSGKSTLLKLLLGLY---QPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADD 568 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCH
Confidence 478999999999999999999444 3333322 2333333333 23467888877654 344
Q ss_pred HHHHHHHH-----HHHhc-CC-CCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 71 EVTVSLIQ-----KEMES-SD-SKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 71 ~~~~~~i~-----~~l~~-~~-~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+...+.+. +.+.. .. .+..+-+ .++.++.|++++++++..+|++ ++||+|+
T Consensus 569 ~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~i-liLDE~T 629 (694)
T TIGR03375 569 EEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPI-LLLDEPT 629 (694)
T ss_pred HHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE-EEEeCCC
Confidence 43332222 11221 11 1333322 3667799999999999999999 7799998
No 228
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.01 E-value=4e-10 Score=83.24 Aligned_cols=112 Identities=22% Similarity=0.327 Sum_probs=62.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH------------------HHHHhcCCh-----hhHHHHHHhhcCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL------------------RREIASNSE-----YGTTILNTIKEGK 66 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~------------------~~~~~~~~~-----~~~~~~~~l~~~~ 66 (196)
-+++|.|++||||||++++|+ |....+.|.+. ++.+....+ ....+.+.+..+.
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 107 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILG---GLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPL 107 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHh---CCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHH
Confidence 478999999999999999999 65544433221 111111111 1112333332211
Q ss_pred C---CCHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287 67 I---VPSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM 125 (196)
Q Consensus 67 ~---~~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~ 125 (196)
. .........+.+.+...+-. ......++.++.|++.+++++...|++ ++||+|+..+
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l-llLDEP~~~L 171 (218)
T cd03255 108 LLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKI-ILADEPTGNL 171 (218)
T ss_pred hhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCE-EEEcCCcccC
Confidence 0 11111112233333322211 112345777899999999999999998 7799999443
No 229
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.01 E-value=3e-10 Score=89.33 Aligned_cols=109 Identities=21% Similarity=0.274 Sum_probs=61.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------------HHHHhcCCh-----hhHHHHHHhhcC--
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------------RREIASNSE-----YGTTILNTIKEG-- 65 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------------~~~~~~~~~-----~~~~~~~~l~~~-- 65 (196)
-+++|.|++||||||++++|+ |....+.|.+. ++.+....+ ...++.+++..+
T Consensus 32 ei~~iiG~nGsGKSTLlk~L~---Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~ 108 (343)
T PRK11153 32 EIFGVIGASGAGKSTLIRCIN---LLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLE 108 (343)
T ss_pred CEEEEECCCCCcHHHHHHHHh---CCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHH
Confidence 478999999999999999999 66544444321 111111111 011223333211
Q ss_pred -CCCCHHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 66 -KIVPSEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 66 -~~~~~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
...........+.+.+...+-..+ -...++.++.|++.+++++...|++ ++||+|+
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~i-LlLDEPt 168 (343)
T PRK11153 109 LAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKV-LLCDEAT 168 (343)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCE-EEEeCCc
Confidence 011122122223333332221111 1334667799999999999999998 8899999
No 230
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=99.01 E-value=1.1e-08 Score=79.73 Aligned_cols=34 Identities=18% Similarity=0.481 Sum_probs=28.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC------CceechhHHH
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYG------LTHLSAGELL 44 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~------~~~i~~~~~~ 44 (196)
+++++|++||||||+++.|++.+. +.+++.|+++
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i 40 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDII 40 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccc
Confidence 367899999999999999998874 3478888876
No 231
>PLN02318 phosphoribulokinase/uridine kinase
Probab=99.01 E-value=5.7e-09 Score=85.85 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=29.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhC-CceechhHH
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYG-LTHLSAGEL 43 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~-~~~i~~~~~ 43 (196)
.++++|+|.|++||||||+++.|+..++ ...+..|+.
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy 100 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY 100 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence 4578999999999999999999998763 345555544
No 232
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.00 E-value=9.9e-10 Score=90.54 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=28.0
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+..++.++.|++.++.++...|++ ++||+|+
T Consensus 133 ~~~LSgG~~qrv~la~al~~~p~l-llLDEPt 163 (490)
T PRK10938 133 FKYLSTGETRKTLLCQALMSEPDL-LILDEPF 163 (490)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCE-EEEcCCc
Confidence 556778899999999999999998 8899999
No 233
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.00 E-value=1.1e-09 Score=81.38 Aligned_cols=109 Identities=20% Similarity=0.281 Sum_probs=61.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCC-------hhhHHH---------------HHHhhcCCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNS-------EYGTTI---------------LNTIKEGKI 67 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~-------~~~~~~---------------~~~l~~~~~ 67 (196)
-++++.|++|+||||++++|+ |+.+.+.|.+--....+.. ..+..+ -..++.-..
T Consensus 51 ~ivgflGaNGAGKSTtLKmLT---Gll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~ 127 (325)
T COG4586 51 EIVGFLGANGAGKSTTLKMLT---GLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYE 127 (325)
T ss_pred cEEEEEcCCCCcchhhHHHHh---CccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHh
Confidence 478889999999999999999 8887776655211100000 000000 011111122
Q ss_pred CCHHHHHHH---HHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 68 VPSEVTVSL---IQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 68 ~~~~~~~~~---i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+++....+. +-+.++..+.-.|=+..++.++.-+..++.++..+|.+ +|||+|+
T Consensus 128 Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~V-LfLDEpT 184 (325)
T COG4586 128 IPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKV-LFLDEPT 184 (325)
T ss_pred CCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcE-EEecCCc
Confidence 333333332 22333322111222455667777777888888888887 8999998
No 234
>PRK15453 phosphoribulokinase; Provisional
Probab=99.00 E-value=6.9e-09 Score=78.27 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=30.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhC-----CceechhHHH
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYG-----LTHLSAGELL 44 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~-----~~~i~~~~~~ 44 (196)
.++++|+|+|.|||||||+++.|++.++ ..+++.|.+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh 45 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFH 45 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccccc
Confidence 4568999999999999999999998774 4456666554
No 235
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.00 E-value=4.5e-10 Score=82.81 Aligned_cols=111 Identities=23% Similarity=0.335 Sum_probs=61.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH-----------------HHHHHhcCChh-----hHHHHHHhhcC--
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL-----------------LRREIASNSEY-----GTTILNTIKEG-- 65 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~-----------------~~~~~~~~~~~-----~~~~~~~l~~~-- 65 (196)
-+++|.|++||||||+++.|+ |....+.|.+ .++.+....+. ...+.+++..+
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 106 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLIL---GIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLR 106 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHH
Confidence 478999999999999999999 6544333322 11111111111 11223332211
Q ss_pred -CCCCHHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 66 -KIVPSEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 66 -~~~~~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
...........+.+.+...+-..+ -...++.++.|++.+++++...|++ ++||+|+.-
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l-lllDEPt~~ 168 (216)
T TIGR00960 107 IIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPL-LLADEPTGN 168 (216)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCCCc
Confidence 001111112223333332221111 2345777899999999999999999 779999944
No 236
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.00 E-value=2.1e-09 Score=82.65 Aligned_cols=109 Identities=22% Similarity=0.352 Sum_probs=64.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH----------------HHHHHhcCCh------hhHHHHHHhhcCC-
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL----------------LRREIASNSE------YGTTILNTIKEGK- 66 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~----------------~~~~~~~~~~------~~~~~~~~l~~~~- 66 (196)
-+++|.|++||||||++++|+ |....+.|++ .++.+....+ ...++.+.+..+.
T Consensus 34 e~~~i~G~nGaGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~ 110 (287)
T PRK13637 34 EFVGLIGHTGSGKSTLIQHLN---GLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPI 110 (287)
T ss_pred CEEEEECCCCCcHHHHHHHHh---cCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHH
Confidence 488999999999999999999 6654443322 1111111111 1123344443211
Q ss_pred --CCCHHHHHHHHHHHHhcCCCC--cE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 67 --IVPSEVTVSLIQKEMESSDSK--KF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 67 --~~~~~~~~~~i~~~l~~~~~~--~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
..........+.+.+...+.. .+ -...++.++.|++.+++++...|++ ++||+|+
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~l-lllDEPt 172 (287)
T PRK13637 111 NLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKI-LILDEPT 172 (287)
T ss_pred HCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCE-EEEECCc
Confidence 122332333344444432221 11 1345677899999999999999999 7799999
No 237
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.00 E-value=4.6e-09 Score=82.19 Aligned_cols=85 Identities=14% Similarity=0.226 Sum_probs=50.7
Q ss_pred CCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH---HHHHHHhchHhHHHHHHhcCcEEE
Q 029287 94 FPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK---RLQVFKALNLPVINYYARRGKLYT 170 (196)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 170 (196)
++.++.|++.++.++...|++ +++|+|+.-+....... ..+-...+.+ ....+.+|+...+..++++..++.
T Consensus 162 LSgG~~QRv~IArAL~~~P~l-lilDEPts~LD~~~~~~----i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~ 236 (330)
T PRK09473 162 FSGGMRQRVMIAMALLCRPKL-LIADEPTTALDVTVQAQ----IMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMY 236 (330)
T ss_pred CCHHHHHHHHHHHHHHcCCCE-EEEeCCCccCCHHHHHH----HHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 445699999999999999999 77999993222111111 0000111111 012567777777777777554442
Q ss_pred ---EeCCCCHhHHHHH
Q 029287 171 ---INAVGTVDEIFEQ 183 (196)
Q Consensus 171 ---I~~~~~~~~v~~~ 183 (196)
|...++.+++++.
T Consensus 237 ~G~ive~g~~~~i~~~ 252 (330)
T PRK09473 237 AGRTMEYGNARDVFYQ 252 (330)
T ss_pred CCEEEEECCHHHHHhC
Confidence 5566778887653
No 238
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.99 E-value=1.6e-09 Score=80.84 Aligned_cols=110 Identities=21% Similarity=0.290 Sum_probs=60.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------------HHHHhcCCh-----hhHHHHHHhhcC--
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------------RREIASNSE-----YGTTILNTIKEG-- 65 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------------~~~~~~~~~-----~~~~~~~~l~~~-- 65 (196)
-+++|.|++||||||+++.|+ |....+.|.+. ++.+...++ ....+.+++..+
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~ 108 (233)
T cd03258 32 EIFGIIGRSGAGKSTLIRCIN---GLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLE 108 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHH
Confidence 488999999999999999999 65444333221 111111111 011223332211
Q ss_pred -CCCCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 66 -KIVPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 66 -~~~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
...........+.+.+....-.. .-...++.++.|++.++.++...|++ ++||+|+.
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l-llLDEP~~ 169 (233)
T cd03258 109 IAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKV-LLCDEATS 169 (233)
T ss_pred HcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE-EEecCCCC
Confidence 01111111222333333221111 12345677899999999999999998 77999993
No 239
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.99 E-value=6.8e-10 Score=87.74 Aligned_cols=109 Identities=23% Similarity=0.298 Sum_probs=61.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH------------------HHHHhcCCh-----hhHHHHHHhhcCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL------------------RREIASNSE-----YGTTILNTIKEGK 66 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~------------------~~~~~~~~~-----~~~~~~~~l~~~~ 66 (196)
-+++|.|++||||||++++|+ |....+.|.+. ++.+....+ ...++.+++..+.
T Consensus 24 ei~~l~G~nGsGKSTLl~~ia---Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~ 100 (354)
T TIGR02142 24 GVTAIFGRSGSGKTTLIRLIA---GLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGM 100 (354)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHh
Confidence 488999999999999999999 76554444321 010111111 1122334443221
Q ss_pred C-CCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 67 I-VPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 67 ~-~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
. .........+.+.+...+-.. --...++.++.|++.+++++...|++ ++||+|+
T Consensus 101 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~l-llLDEPt 159 (354)
T TIGR02142 101 KRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRL-LLMDEPL 159 (354)
T ss_pred hccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCE-EEEcCCC
Confidence 1 111111112233333221111 12344667899999999999999998 8899999
No 240
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.99 E-value=1.5e-09 Score=82.20 Aligned_cols=31 Identities=26% Similarity=0.556 Sum_probs=27.2
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
...++.++.|++.+++++...|++ ++||+|+
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~l-lllDEPt 180 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPEV-LLFDEPT 180 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCE-EEEeCCc
Confidence 445777899999999999999998 7799999
No 241
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.99 E-value=4.3e-09 Score=75.64 Aligned_cols=163 Identities=20% Similarity=0.308 Sum_probs=83.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCce-echhHHHHHHHhcCCh--------hhHHHHHHhhcCCCCCH--------H
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTH-LSAGELLRREIASNSE--------YGTTILNTIKEGKIVPS--------E 71 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~-i~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~--------~ 71 (196)
+++|+|+||+||||||+++.|.+.++-.+ ...... .+....+.. ....+.+.+..+..+.. -
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~T-TR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YG 80 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHT-TRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYG 80 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEE-SS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeec-ccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhh
Confidence 46788899999999999999998874211 111011 111122111 11223333333332211 0
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh-HHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 029287 72 VTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE-EEMVNRVLNRNEGRVDDNIDTVRKRLQV 150 (196)
Q Consensus 72 ~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~-~~~~~Rl~~r~~~~~~~~~~~~~~~~~~ 150 (196)
.....+...+.. +...+++.-+ .-...+... ...|- +||++.|. +.+.+|+.+| ..++.+.+.++...
T Consensus 81 t~~~~i~~~~~~--gk~~il~~~~---~g~~~L~~~-~~~~~-~IfI~~~s~~~l~~~l~~r----~~~~~~~i~~r~~~ 149 (183)
T PF00625_consen 81 TSKSAIDKVLEE--GKHCILDVDP---EGVKQLKKA-GFNPI-VIFIKPPSPEVLKRRLRRR----GDESEEEIEERLER 149 (183)
T ss_dssp EEHHHHHHHHHT--TTEEEEEETH---HHHHHHHHC-TTTEE-EEEEEESSHHHHHHHHHTT----THCHHHHHHHHHHH
T ss_pred hccchhhHhhhc--CCcEEEEccH---HHHHHHHhc-ccCce-EEEEEccchHHHHHHHhcc----ccccHHHHHHHHHH
Confidence 113445555553 4455665333 222233322 33444 48888765 6666666665 33445556665554
Q ss_pred HHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHh
Q 029287 151 FKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAA 190 (196)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~ 190 (196)
+... ...+.+ ... +|.+ .++++...++.++|++
T Consensus 150 ~~~~----~~~~~~-fd~-vi~n-~~le~~~~~l~~ii~~ 182 (183)
T PF00625_consen 150 AEKE----FEHYNE-FDY-VIVN-DDLEEAVKELKEIIEQ 182 (183)
T ss_dssp HHHH----HGGGGG-SSE-EEEC-SSHHHHHHHHHHHHHH
T ss_pred HHHH----HhHhhc-CCE-EEEC-cCHHHHHHHHHHHHHh
Confidence 4433 112211 233 3444 4899999999988865
No 242
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.98 E-value=2e-09 Score=92.18 Aligned_cols=109 Identities=18% Similarity=0.336 Sum_probs=69.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCCCCHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKIVPSE 71 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~~~~~ 71 (196)
-.++|+|++||||||+++.|. |....+.|.+ +++.+...++ +..++++++..+.+.+++
T Consensus 480 e~vaIvG~sGsGKSTLlklL~---gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e 556 (686)
T TIGR03797 480 EFVAIVGPSGSGKSTLLRLLL---GFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLD 556 (686)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHH
Confidence 578999999999999999999 5544444333 2333333222 234578888776554444
Q ss_pred HHHHHHHH-----HHhc-CC-CCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 72 VTVSLIQK-----EMES-SD-SKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 72 ~~~~~i~~-----~l~~-~~-~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.....+.. .+.. +. .+..+-+ .++.++.|++++++++..+|++ ++||+|+
T Consensus 557 ~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~i-LiLDEpT 616 (686)
T TIGR03797 557 EAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRI-LLFDEAT 616 (686)
T ss_pred HHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE-EEEeCCc
Confidence 33322221 1111 11 1223322 3667799999999999999999 7799999
No 243
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.98 E-value=1.7e-09 Score=80.06 Aligned_cols=110 Identities=24% Similarity=0.321 Sum_probs=60.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH---------------HHHHhcCCh-----hhHHHHHHhhcCCCC-
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL---------------RREIASNSE-----YGTTILNTIKEGKIV- 68 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~---------------~~~~~~~~~-----~~~~~~~~l~~~~~~- 68 (196)
-+++|.|++||||||+++.|+ |....+.|.+. ++.+...++ ....+.+++......
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~ 103 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIM---GLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYAR 103 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhc
Confidence 588999999999999999999 65444433221 111111111 111233333221110
Q ss_pred -C--HHHHHHHHHHHHh-cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 69 -P--SEVTVSLIQKEME-SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 69 -~--~~~~~~~i~~~l~-~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
. .......+.+.+. ......--+..++.++.|++.+++++...|++ ++||+|+.
T Consensus 104 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l-lllDEPt~ 161 (222)
T cd03224 104 RRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKL-LLLDEPSE 161 (222)
T ss_pred CchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCE-EEECCCcc
Confidence 0 0111112222221 11111112345777899999999999999998 77999993
No 244
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.98 E-value=4.7e-10 Score=82.63 Aligned_cols=111 Identities=19% Similarity=0.229 Sum_probs=61.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------------HHHHhcCChh-----hHHHHHHhhcCC-
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------------RREIASNSEY-----GTTILNTIKEGK- 66 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------------~~~~~~~~~~-----~~~~~~~l~~~~- 66 (196)
-+++|+|++||||||+++.|+ |....+.|.+. ++.+....+. ...+.+.+..+.
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 105 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLY---GALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLE 105 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHH
Confidence 488999999999999999999 65443333221 1111111111 112233322110
Q ss_pred --CCCHHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 67 --IVPSEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 67 --~~~~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
..........+.+.+...+-..+ ....++.++.|++.+++++...|++ ++||+|+..
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l-llLDEPt~~ 167 (214)
T TIGR02673 106 VRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPL-LLADEPTGN 167 (214)
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCE-EEEeCCccc
Confidence 01111112223333332221111 2345777899999999999999998 779999844
No 245
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.98 E-value=1.6e-09 Score=81.13 Aligned_cols=109 Identities=21% Similarity=0.333 Sum_probs=60.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH----------------HHHHhcCCh-----hhHHHHHHhhcCC--
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL----------------RREIASNSE-----YGTTILNTIKEGK-- 66 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~----------------~~~~~~~~~-----~~~~~~~~l~~~~-- 66 (196)
-+++|.|++||||||+++.|+ |....+.|.+. ++.+....+ ....+.+++..+.
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 104 (240)
T PRK09493 28 EVVVIIGPSGSGKSTLLRCIN---KLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLR 104 (240)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHH
Confidence 488999999999999999999 65544433221 111111111 0112233332110
Q ss_pred --CCCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 67 --IVPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 67 --~~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
..........+.+.+...+-.. .-...++.++.|++.+++++...|++ ++||+|+
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l-lllDEP~ 164 (240)
T PRK09493 105 VRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKL-MLFDEPT 164 (240)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCE-EEEcCCc
Confidence 1111112222333333221111 11345677899999999999999998 7799999
No 246
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.98 E-value=1.7e-10 Score=91.51 Aligned_cols=165 Identities=19% Similarity=0.281 Sum_probs=86.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH----------------------HHhcCCh-----hhHHHHHHh
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR----------------------EIASNSE-----YGTTILNTI 62 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~----------------------~~~~~~~-----~~~~~~~~l 62 (196)
-+++|+|++||||||++++|+ |....+.|.+... .+....+ ...++.+++
T Consensus 51 ei~~I~G~nGsGKSTLlr~L~---Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi 127 (382)
T TIGR03415 51 EICVLMGLSGSGKSSLLRAVN---GLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENV 127 (382)
T ss_pred CEEEEECCCCCcHHHHHHHHh---CCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHH
Confidence 478999999999999999999 6544433322111 0111111 111233333
Q ss_pred hcCC---CCCHHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCC
Q 029287 63 KEGK---IVPSEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGR 136 (196)
Q Consensus 63 ~~~~---~~~~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~ 136 (196)
..+. ..........+.+.++......+ -...++.++.|++.+++++...|++ +++|+|+.-+.......
T Consensus 128 ~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~I-LLlDEPts~LD~~~r~~---- 202 (382)
T TIGR03415 128 AFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADI-LLMDEPFSALDPLIRTQ---- 202 (382)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE-EEEECCCccCCHHHHHH----
Confidence 3221 11222222333344443222222 1334666799999999999999999 77999993322222111
Q ss_pred CCCcHHHHHH---HHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHH
Q 029287 137 VDDNIDTVRK---RLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFE 182 (196)
Q Consensus 137 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~ 182 (196)
..+-...+.+ ....+.+|....+..++++..++. +...++++++..
T Consensus 203 l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~ 254 (382)
T TIGR03415 203 LQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVL 254 (382)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 0000111111 122566677777777777544432 445567777754
No 247
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.98 E-value=5.7e-10 Score=82.13 Aligned_cols=112 Identities=20% Similarity=0.337 Sum_probs=64.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH---------HHHHhcCCh-------hhHHHHHHhhcCCCC-----
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL---------RREIASNSE-------YGTTILNTIKEGKIV----- 68 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~---------~~~~~~~~~-------~~~~~~~~l~~~~~~----- 68 (196)
-+++|.|++||||||+++.|+ |....+.|.+. ++.+....+ ...++.+++......
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~---G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~ 102 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAIL---GLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLF 102 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHc---CCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhccccccccc
Confidence 478999999999999999999 66544444321 121221111 112344444322110
Q ss_pred --CHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287 69 --PSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM 125 (196)
Q Consensus 69 --~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~ 125 (196)
........+.+.+...+-.. --+..++.++.|++.++.++...|++ ++||+|+.-+
T Consensus 103 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l-lllDEPt~~L 163 (213)
T cd03235 103 RRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDL-LLLDEPFAGV 163 (213)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCE-EEEeCCcccC
Confidence 11112223333333221111 12445777899999999999999999 7799999443
No 248
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.98 E-value=5.1e-10 Score=83.82 Aligned_cols=110 Identities=21% Similarity=0.294 Sum_probs=62.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH------------HHhcCCh-----hhHHHHHHhhcCCC---C-
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR------------EIASNSE-----YGTTILNTIKEGKI---V- 68 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~------------~~~~~~~-----~~~~~~~~l~~~~~---~- 68 (196)
-+++|.|++||||||+++.|+ |....+.|.+... .+....+ ....+.+++..+.. .
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 105 (239)
T cd03296 29 ELVALLGPSGSGKTTLLRLIA---GLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRS 105 (239)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhcccc
Confidence 478999999999999999999 6654444433111 1111000 01123333322110 0
Q ss_pred ---CHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 69 ---PSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 69 ---~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
........+.+.+....-. ..-+..++.++.|++.+++++...|++ ++||+|+.
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l-lllDEP~~ 165 (239)
T cd03296 106 ERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKV-LLLDEPFG 165 (239)
T ss_pred ccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCcc
Confidence 1111112223333321111 112345778899999999999999998 77999993
No 249
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.98 E-value=2.2e-10 Score=82.15 Aligned_cols=102 Identities=24% Similarity=0.290 Sum_probs=59.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF 89 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~ 89 (196)
-+++|.|++||||||+++.|+ |....+.|.+..............++..+. .+.+ +.+.+........
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~---G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~--------~~~q-~l~~~gl~~~~~~ 93 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLA---GLLKPSSGEILLDGKDLASLSPKELARKIA--------YVPQ-ALELLGLAHLADR 93 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEECCcCCHHHHHHHHh--------HHHH-HHHHcCCHhHhcC
Confidence 488999999999999999999 776655555432211000000000110000 0000 2222221111011
Q ss_pred EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 90 LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 90 iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
-...++.++.+++.+++++...|++ +++|+|+..
T Consensus 94 ~~~~LS~G~~qrl~laral~~~p~l-lllDEP~~~ 127 (180)
T cd03214 94 PFNELSGGERQRVLLARALAQEPPI-LLLDEPTSH 127 (180)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCE-EEEeCCccC
Confidence 1345777899999999999999999 779999944
No 250
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.98 E-value=3.2e-09 Score=80.13 Aligned_cols=32 Identities=19% Similarity=0.446 Sum_probs=27.1
Q ss_pred eCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 92 DGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
..++.++.|++.+++++...|++ ++||+|+..
T Consensus 145 ~~LS~G~~qrv~laral~~~p~l-lllDEP~~~ 176 (252)
T TIGR03005 145 AQLSGGQQQRVAIARALAMRPKV-MLFDEVTSA 176 (252)
T ss_pred hhcCHHHHHHHHHHHHHHcCCCE-EEEeCCccc
Confidence 44667799999999999999998 779999933
No 251
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=1.6e-09 Score=83.36 Aligned_cols=109 Identities=21% Similarity=0.270 Sum_probs=62.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH------------------HHHHhcCChh------hHHHHHHhhcC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL------------------RREIASNSEY------GTTILNTIKEG 65 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~------------------~~~~~~~~~~------~~~~~~~l~~~ 65 (196)
-+++|.|++||||||++++|+ |....+.|.+. +..+....+. ...+.+++..+
T Consensus 34 e~~~iiG~NGaGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~ 110 (287)
T PRK13641 34 SFVALVGHTGSGKSTLMQHFN---ALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFG 110 (287)
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHH
Confidence 478999999999999999999 66554444221 1111111111 11233333211
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCCC----cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 66 ---KIVPSEVTVSLIQKEMESSDSK----KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 66 ---~~~~~~~~~~~i~~~l~~~~~~----~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
...........+.+.+...+-. ..-+..++.++.|++.+++++...|++ ++||+|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~l-LlLDEPt 173 (287)
T PRK13641 111 PKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEI-LCLDEPA 173 (287)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCE-EEEECCC
Confidence 0111122222233333322211 112445777899999999999999998 7899999
No 252
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=1.9e-09 Score=82.30 Aligned_cols=109 Identities=21% Similarity=0.279 Sum_probs=60.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH----------------HHHHHhcCChh------hHHHHHHhhcC--
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL----------------LRREIASNSEY------GTTILNTIKEG-- 65 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~----------------~~~~~~~~~~~------~~~~~~~l~~~-- 65 (196)
-+++|.|++||||||+++.|+ |....+.|.+ .++.+....+. ...+.+.+...
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~ 104 (271)
T PRK13638 28 PVTGLVGANGCGKSTLFMNLS---GLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLR 104 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHc---CCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHH
Confidence 478999999999999999999 6544333322 11111111111 01122222111
Q ss_pred -CCCCHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 66 -KIVPSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 66 -~~~~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
...........+...+...+.. ..-+..++.++.|++.+++++...|++ ++||+|+
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~l-llLDEPt 164 (271)
T PRK13638 105 NLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARY-LLLDEPT 164 (271)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCE-EEEeCCc
Confidence 0111111222233333321111 112455777899999999999999999 7799999
No 253
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.97 E-value=6.2e-09 Score=80.01 Aligned_cols=109 Identities=19% Similarity=0.249 Sum_probs=64.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH------------------HHHHHhcCChh------hHHHHHHhhcC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL------------------LRREIASNSEY------GTTILNTIKEG 65 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~------------------~~~~~~~~~~~------~~~~~~~l~~~ 65 (196)
-+++|.|++||||||++++|+ |....+.|.+ .++.+....+. ...+.+++..+
T Consensus 34 e~~~i~G~nGsGKSTLl~~L~---Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~ 110 (286)
T PRK13646 34 KYYAIVGQTGSGKSTLIQNIN---ALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFG 110 (286)
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHHHHhh
Confidence 488999999999999999999 6544333321 12222222221 12444444322
Q ss_pred C---CCCHHHHHHHHHHHHhcCCCC----cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 66 K---IVPSEVTVSLIQKEMESSDSK----KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 66 ~---~~~~~~~~~~i~~~l~~~~~~----~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
. ..........+.+.+...+.. ..-...++.++.|++.+++++...|++ ++||+|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~i-lllDEPt 173 (286)
T PRK13646 111 PKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDI-IVLDEPT 173 (286)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCE-EEEECCc
Confidence 1 122222233333444432221 112455777899999999999999998 7799999
No 254
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.97 E-value=1.7e-09 Score=78.88 Aligned_cols=112 Identities=19% Similarity=0.208 Sum_probs=62.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCCh-----hhHHHHHHhhcCCCCCHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNSE-----YGTTILNTIKEGKIVPSE 71 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~~-----~~~~~~~~l~~~~~~~~~ 71 (196)
-+++|.|++||||||+++.|+ |....+.|.+. ++.+....+ ....+.+.+.........
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 103 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILA---GLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSD 103 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhcccccH
Confidence 588999999999999999999 65443333221 111111110 011233333221111111
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287 72 VTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM 125 (196)
Q Consensus 72 ~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~ 125 (196)
.....+.+.+.......-.+..++.++.|++.+++++...|++ ++||+|+..+
T Consensus 104 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l-lllDEPt~~L 156 (201)
T cd03231 104 EQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPL-WILDEPTTAL 156 (201)
T ss_pred HHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCCCCC
Confidence 1122222222221111112445777899999999999999998 7799999543
No 255
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.97 E-value=4.7e-09 Score=78.74 Aligned_cols=109 Identities=23% Similarity=0.385 Sum_probs=60.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh----hhHHHHHHhhcCCCCC--
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE----YGTTILNTIKEGKIVP-- 69 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~----~~~~~~~~l~~~~~~~-- 69 (196)
-+++|.|++||||||+++.|+ |....+.|.+. ++.....++ ....+.+++..+....
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~ 106 (241)
T PRK14250 30 AIYTIVGPSGAGKSTLIKLIN---RLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGE 106 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHhcchhhcCc
Confidence 478999999999999999999 65444333221 111111111 1123344443221111
Q ss_pred HHHHHHHHHHHHhcC-CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 70 SEVTVSLIQKEMESS-DSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 70 ~~~~~~~i~~~l~~~-~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.......+.+.+... .....-...++.++.|++.++.++...|++ ++||+|+
T Consensus 107 ~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~l-lllDEPt 159 (241)
T PRK14250 107 KNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEV-LLLDEPT 159 (241)
T ss_pred HHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCE-EEEeCCc
Confidence 111112222222221 111112445777899999999999999998 7799999
No 256
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.97 E-value=1.4e-09 Score=82.74 Aligned_cols=110 Identities=22% Similarity=0.286 Sum_probs=62.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh-----hhHHHHHHhhcCCC---
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE-----YGTTILNTIKEGKI--- 67 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~-----~~~~~~~~l~~~~~--- 67 (196)
-+++|.|++||||||++++|+ |....+.|.+. ++.+....+ ....+.+++..+..
T Consensus 38 e~~~i~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 114 (265)
T PRK10575 38 KVTGLIGHNGSGKSTLLKMLG---RHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWH 114 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHc---CCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCccccc
Confidence 488999999999999999999 65544333221 111111111 11234444432210
Q ss_pred ----CCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 68 ----VPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 68 ----~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
.........+...+...+-.. .....++.++.|++.++.++...|++ ++||+|+.
T Consensus 115 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l-llLDEPt~ 176 (265)
T PRK10575 115 GALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRC-LLLDEPTS 176 (265)
T ss_pred ccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCE-EEEcCCcc
Confidence 011111222333333222111 12345777899999999999999999 77999993
No 257
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.97 E-value=2.5e-09 Score=76.58 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=29.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh-----CCceechhHHHH
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNY-----GLTHLSAGELLR 45 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~-----~~~~i~~~~~~~ 45 (196)
+|+|.|++||||||+++.|++.+ +...++.+++++
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence 57899999999999999999997 345677777775
No 258
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.97 E-value=3e-09 Score=85.03 Aligned_cols=109 Identities=22% Similarity=0.287 Sum_probs=62.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH------------------HHHhcCCh-----hhHHHHHHhhcCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR------------------REIASNSE-----YGTTILNTIKEGK 66 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~------------------~~~~~~~~-----~~~~~~~~l~~~~ 66 (196)
-+++|.|++||||||++++|+ |+...+.|.+.. +.+....+ ...++.+++..+.
T Consensus 55 ei~~LvG~NGsGKSTLLr~I~---Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~ 131 (400)
T PRK10070 55 EIFVIMGLSGSGKSTMVRLLN---RLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGM 131 (400)
T ss_pred CEEEEECCCCchHHHHHHHHH---cCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHH
Confidence 478999999999999999999 655444433211 01111111 0112333332211
Q ss_pred ---CCCHHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 67 ---IVPSEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 67 ---~~~~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
..........+.+.+...+-..+ -...++.++.|++.+++++...|++ ++||+|+
T Consensus 132 ~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~i-LLLDEPt 192 (400)
T PRK10070 132 ELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDI-LLMDEAF 192 (400)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCE-EEEECCC
Confidence 11112222233334443222221 2344667799999999999999998 7899999
No 259
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.97 E-value=6.5e-10 Score=84.06 Aligned_cols=106 Identities=22% Similarity=0.266 Sum_probs=61.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH---------HHHHhcCCh-----hhHHHHHHhhcCCCCCHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL---------RREIASNSE-----YGTTILNTIKEGKIVPSEVTVS 75 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~---------~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~ 75 (196)
-+++|.|++||||||+++.|+ |....+.|.+. ++.+....+ ....+.+++..+..... ..
T Consensus 39 e~~~I~G~NGsGKSTLlk~l~---Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~---~~ 112 (257)
T PRK11247 39 QFVAVVGRSGCGKSTLLRLLA---GLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQW---RD 112 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchH---HH
Confidence 478999999999999999999 66544444321 111111111 11234444432211001 11
Q ss_pred HHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 76 LIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 76 ~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.+.+.+....-.. .-...++.++.|++.+++++...|++ ++||+|+
T Consensus 113 ~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~l-llLDEPt 161 (257)
T PRK11247 113 AALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGL-LLLDEPL 161 (257)
T ss_pred HHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCC
Confidence 2222333211111 12345777899999999999999999 7799999
No 260
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.96 E-value=6e-09 Score=77.57 Aligned_cols=109 Identities=21% Similarity=0.243 Sum_probs=59.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH---------------HHHHhcCCh-----hhHHHHHHhhcCC---
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL---------------RREIASNSE-----YGTTILNTIKEGK--- 66 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~---------------~~~~~~~~~-----~~~~~~~~l~~~~--- 66 (196)
-+++|.|++||||||++++|+ |....+.|.+. ++.+....+ ....+.+++..+.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 103 (230)
T TIGR03410 27 EVTCVLGRNGVGKTTLLKTLM---GLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAAL 103 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhc
Confidence 488999999999999999999 65443333221 111111111 1112233322110
Q ss_pred CCCHHHHHHHHHHHHh-cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 67 IVPSEVTVSLIQKEME-SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 67 ~~~~~~~~~~i~~~l~-~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
..........+.+.+. ......--+..++.++.|++.+++++...|++ ++||+|+
T Consensus 104 ~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~i-lllDEPt 159 (230)
T TIGR03410 104 PRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKL-LLLDEPT 159 (230)
T ss_pred CcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEecCCc
Confidence 0111111122222221 11100111345777899999999999999998 7799999
No 261
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.96 E-value=9.9e-11 Score=80.11 Aligned_cols=109 Identities=22% Similarity=0.279 Sum_probs=59.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHH---------hhcCCCCCHHH---HHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNT---------IKEGKIVPSEV---TVSLI 77 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---------l~~~~~~~~~~---~~~~i 77 (196)
-+++|.|++||||||+++.|+ |....+.|.+...............+.. +..+..+.+.. ....+
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~---g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~~~~~ 88 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALA---GLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDERIEEV 88 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHT---TSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHHHHHH
T ss_pred CEEEEEccCCCccccceeeec---cccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 478999999999999999999 6554444433111000000000000000 00001011111 22223
Q ss_pred HHHHhcCCCCcEEE----eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 78 QKEMESSDSKKFLI----DGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 78 ~~~l~~~~~~~~ii----d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.+.+.........+ ..++.++.+++.++.++...|++ ++||+|+
T Consensus 89 l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~l-lllDEPt 136 (137)
T PF00005_consen 89 LKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKL-LLLDEPT 136 (137)
T ss_dssp HHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSE-EEEESTT
T ss_pred ccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCE-EEEeCCC
Confidence 33333222112234 66777899999999999999999 7799996
No 262
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.96 E-value=5.5e-09 Score=80.21 Aligned_cols=109 Identities=19% Similarity=0.394 Sum_probs=64.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH----------------HHHHHhcCCh------hhHHHHHHhhcCC-
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL----------------LRREIASNSE------YGTTILNTIKEGK- 66 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~----------------~~~~~~~~~~------~~~~~~~~l~~~~- 66 (196)
-+++|.|++||||||++++|+ |....+.|++ .++.+....+ ...++.+++..+.
T Consensus 33 e~~~i~G~nGaGKSTLl~~i~---Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~ 109 (283)
T PRK13636 33 EVTAILGGNGAGKSTLFQNLN---GILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAV 109 (283)
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHH
Confidence 488999999999999999999 6544333321 1111111111 1123444443211
Q ss_pred --CCCHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 67 --IVPSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 67 --~~~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
..+.......+...+...+-. ..-...++.++.|++.+++++...|++ ++||+|+
T Consensus 110 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~l-LilDEPt 169 (283)
T PRK13636 110 NLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV-LVLDEPT 169 (283)
T ss_pred HcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE-EEEeCCc
Confidence 112222223333443322211 123556778899999999999999999 7799999
No 263
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.96 E-value=1.3e-09 Score=78.88 Aligned_cols=113 Identities=18% Similarity=0.274 Sum_probs=62.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH----------------HHHHhcCChh------hHHHHHHhhcC--
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL----------------RREIASNSEY------GTTILNTIKEG-- 65 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~----------------~~~~~~~~~~------~~~~~~~l~~~-- 65 (196)
-+++|.|++||||||++++|+ |....+.|.+. ++.+....+. ...+.+++..+
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~~~ 95 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLN---GLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPL 95 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHHHHHHH
Confidence 478999999999999999999 65544433221 1111111111 11223333211
Q ss_pred -CCCCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHH
Q 029287 66 -KIVPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMV 126 (196)
Q Consensus 66 -~~~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~ 126 (196)
...........+.+.+...+-.. .-...++.++.|++.+++++...|++ ++||+|+..+.
T Consensus 96 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l-lllDEPt~~LD 159 (190)
T TIGR01166 96 NLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDV-LLLDEPTAGLD 159 (190)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCcccCC
Confidence 01111211222233333211111 12345667799999999999999998 77999995443
No 264
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.96 E-value=6e-09 Score=79.25 Aligned_cols=32 Identities=13% Similarity=0.280 Sum_probs=27.6
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
...++.++.|++.+++++...|++ ++||+|+.
T Consensus 148 ~~~LSgGe~qrv~laral~~~p~i-llLDEPt~ 179 (265)
T TIGR02769 148 PRQLSGGQLQRINIARALAVKPKL-IVLDEAVS 179 (265)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCcc
Confidence 445777899999999999999998 77999993
No 265
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.96 E-value=1.3e-09 Score=80.25 Aligned_cols=111 Identities=23% Similarity=0.289 Sum_probs=61.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH-----------------HHHHHhcCChh-----hHHHHHHhhcC--
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL-----------------LRREIASNSEY-----GTTILNTIKEG-- 65 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~-----------------~~~~~~~~~~~-----~~~~~~~l~~~-- 65 (196)
-+++|.|++||||||+++.|+ |....+.|.+ .++.+....+. ...+.+++...
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~ 104 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIY---KEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALE 104 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHH
Confidence 478999999999999999999 6544333322 11111111110 01222222211
Q ss_pred -CCCCHHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 66 -KIVPSEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 66 -~~~~~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
.........+.+.+.+...+-..+ ....++.++.|++.+++++...|++ ++||+|+..
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l-lllDEPt~~ 166 (214)
T cd03292 105 VTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTI-LIADEPTGN 166 (214)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCE-EEEeCCCCc
Confidence 001111112223333332221111 1345677799999999999999998 779999944
No 266
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.96 E-value=2.8e-09 Score=83.09 Aligned_cols=30 Identities=33% Similarity=0.645 Sum_probs=26.6
Q ss_pred eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 92 DGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
..++.++.|++.+++++...|++ ++||+|+
T Consensus 175 ~~LSgGqkqRvaiAraL~~~p~i-LLLDEPt 204 (320)
T PRK13631 175 FGLSGGQKRRVAIAGILAIQPEI-LIFDEPT 204 (320)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCE-EEEECCc
Confidence 34677899999999999999999 7799999
No 267
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.96 E-value=8.5e-10 Score=81.20 Aligned_cols=111 Identities=26% Similarity=0.340 Sum_probs=62.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH------------HHHHhcCChh-----hHHHHHHhhcCC---CCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL------------RREIASNSEY-----GTTILNTIKEGK---IVP 69 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~------------~~~~~~~~~~-----~~~~~~~l~~~~---~~~ 69 (196)
-+++|.|++||||||+++.|+ |....+.|.+. ++.+....+. ...+.+++..+. ...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~---G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~ 103 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIA---GLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVP 103 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCCC
Confidence 478999999999999999999 65444433321 1111111110 112233332110 011
Q ss_pred HHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 70 SEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 70 ~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
.......+.+.+...+-.. .....++.++.|++.+++++...|++ ++||+|+.-
T Consensus 104 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~-lllDEPt~~ 160 (213)
T cd03259 104 KAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSL-LLLDEPLSA 160 (213)
T ss_pred HHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCccc
Confidence 1112222333333222111 12345777899999999999999998 779999943
No 268
>PLN02772 guanylate kinase
Probab=98.95 E-value=2.5e-08 Score=78.53 Aligned_cols=163 Identities=17% Similarity=0.266 Sum_probs=85.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCC-ceechhHHHHHHHhcCCh--------hhHHHHHHhhcCCCCCHH-------
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGL-THLSAGELLRREIASNSE--------YGTTILNTIKEGKIVPSE------- 71 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~-~~i~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~------- 71 (196)
..++++|.||+||||||+++.|.+.+.. ......... +....+.. ....+...+..+..+...
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTT-R~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~Y 212 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTT-RAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLY 212 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccC-CCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCccc
Confidence 3468899999999999999999887531 111111111 11111111 112244444444443321
Q ss_pred -HHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecC--hHHHHHHHhhccCCCCCCcHHHHHHHH
Q 029287 72 -VTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCP--EEEMVNRVLNRNEGRVDDNIDTVRKRL 148 (196)
Q Consensus 72 -~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~--~~~~~~Rl~~r~~~~~~~~~~~~~~~~ 148 (196)
...+.+...+.. +..+|++==+.+..+ +.... ++.++++.+| .+.+.+|+..| ...+.+.+++|+
T Consensus 213 GTsk~~V~~vl~~--Gk~vILdLD~qGar~---Lr~~~---l~~v~IFI~PPSlEeLe~RL~~R----GteseE~I~kRL 280 (398)
T PLN02772 213 GTSIEAVEVVTDS--GKRCILDIDVQGARS---VRASS---LEAIFIFICPPSMEELEKRLRAR----GTETEEQIQKRL 280 (398)
T ss_pred cccHHHHHHHHHh--CCcEEEeCCHHHHHH---HHHhc---CCeEEEEEeCCCHHHHHHHHHhc----CCCCHHHHHHHH
Confidence 123444455453 455566633322222 22221 2333444444 58999999888 344677888888
Q ss_pred HHHHhchHhHHHHH--HhcCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287 149 QVFKALNLPVINYY--ARRGKLYTINAVGTVDEIFEQVRAVFA 189 (196)
Q Consensus 149 ~~~~~~~~~~~~~~--~~~~~~~~I~~~~~~~~v~~~i~~~i~ 189 (196)
..+... +... ..... ++|.++ ++++..+++.+++.
T Consensus 281 ~~A~~E----i~~~~~~~~fD-~vIvND-dLe~A~~~L~~iL~ 317 (398)
T PLN02772 281 RNAEAE----LEQGKSSGIFD-HILYND-NLEECYKNLKKLLG 317 (398)
T ss_pred HHHHHH----HhhccccCCCC-EEEECC-CHHHHHHHHHHHHh
Confidence 776432 1111 11112 234444 88988888887764
No 269
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.95 E-value=1.1e-09 Score=81.77 Aligned_cols=110 Identities=21% Similarity=0.209 Sum_probs=62.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH------------HHHhcCCh-----hhHHHHHHhhcCCC---CC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR------------REIASNSE-----YGTTILNTIKEGKI---VP 69 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~------------~~~~~~~~-----~~~~~~~~l~~~~~---~~ 69 (196)
-+++|.|++||||||+++.|+ |....+.|.+.. +......+ ....+.+++..+.. ..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 102 (232)
T PRK10771 26 ERVAILGPSGAGKSTLLNLIA---GFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKL 102 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccccCC
Confidence 488999999999999999999 665544443211 11111111 11233444432210 00
Q ss_pred HHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 70 SEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 70 ~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
.......+.+.+...+-. ......++.++.|++.+++++...|++ ++||+|+.
T Consensus 103 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l-llLDEP~~ 158 (232)
T PRK10771 103 NAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPI-LLLDEPFS 158 (232)
T ss_pred CHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE-EEEeCCcc
Confidence 111122233333322111 112345777899999999999999999 77999993
No 270
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.95 E-value=2.5e-09 Score=80.27 Aligned_cols=109 Identities=22% Similarity=0.269 Sum_probs=61.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------------HHHHhcCChh-----hHHHHHHhhc
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------------RREIASNSEY-----GTTILNTIKE 64 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------------~~~~~~~~~~-----~~~~~~~l~~ 64 (196)
-+++|.|++||||||++++|+ |....+.|.+. ++.+....+. ...+.+++..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~ 105 (242)
T PRK11124 29 ETLVLLGPSGAGKSSLLRVLN---LLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIE 105 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHH
Confidence 478999999999999999999 66544443221 1111111110 1122333321
Q ss_pred C----CCCCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 65 G----KIVPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 65 ~----~~~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
. ...........+.+.+...+-.. -....++.++.|++.+++++...|++ ++||+|+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~l-lilDEPt 169 (242)
T PRK11124 106 APCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQV-LLFDEPT 169 (242)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCC
Confidence 0 00111111222333333221111 12345777899999999999999998 7799999
No 271
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.95 E-value=1.5e-09 Score=79.82 Aligned_cols=112 Identities=24% Similarity=0.365 Sum_probs=61.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCChh------hHHHHHHhhcCC---
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSEY------GTTILNTIKEGK--- 66 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~~------~~~~~~~l~~~~--- 66 (196)
-+++|.|++||||||+++.|+ |....+.|.+ .++.+....+. ...+.+++....
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~ 104 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLN---GLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL 104 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHh---cCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHc
Confidence 488999999999999999999 6544333322 11111111111 112233332110
Q ss_pred CCCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287 67 IVPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM 125 (196)
Q Consensus 67 ~~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~ 125 (196)
..........+.+.+...+-.. --...++.++.|++.+++++...|++ ++||+|+.-+
T Consensus 105 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l-lllDEPt~~L 165 (211)
T cd03225 105 GLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDI-LLLDEPTAGL 165 (211)
T ss_pred CCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCE-EEEcCCcccC
Confidence 0111111122223333211111 11345777899999999999999998 7799999543
No 272
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.95 E-value=1.8e-09 Score=80.28 Aligned_cols=32 Identities=25% Similarity=0.582 Sum_probs=27.7
Q ss_pred eCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 92 DGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
..++.++.|++.++.++...|++ ++||+|+..
T Consensus 140 ~~LSgG~~qrv~la~al~~~p~l-lllDEPt~~ 171 (227)
T cd03260 140 LGLSGGQQQRLCLARALANEPEV-LLLDEPTSA 171 (227)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCE-EEEeCCCcc
Confidence 56777899999999999999999 779999943
No 273
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.94 E-value=9e-10 Score=84.18 Aligned_cols=109 Identities=18% Similarity=0.315 Sum_probs=61.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH----------------HHHHHhcCChh------hHHHHHHhhcCC-
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL----------------LRREIASNSEY------GTTILNTIKEGK- 66 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~----------------~~~~~~~~~~~------~~~~~~~l~~~~- 66 (196)
-+++|.|++||||||++++|+ |....+.|.+ .++.+....+. ...+.+.+..+.
T Consensus 29 e~~~l~G~nGsGKSTLl~~i~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~ 105 (275)
T PRK13639 29 EMVALLGPNGAGKSTLFLHFN---GILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPL 105 (275)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHH
Confidence 388999999999999999999 6544333322 11111111111 012233332110
Q ss_pred --CCCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 67 --IVPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 67 --~~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
..........+.+.++..+-.. -....++.++.|+..++.++...|++ ++||+|+
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~l-lllDEPt 165 (275)
T PRK13639 106 NLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEI-IVLDEPT 165 (275)
T ss_pred HcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCC
Confidence 1111111222333333222111 12445667799999999999999999 7799999
No 274
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.94 E-value=2.7e-09 Score=81.32 Aligned_cols=110 Identities=24% Similarity=0.304 Sum_probs=61.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH------------------HHHhcCCh-----hhHHHHHHhhcC-
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR------------------REIASNSE-----YGTTILNTIKEG- 65 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~------------------~~~~~~~~-----~~~~~~~~l~~~- 65 (196)
-+++|.|++||||||++++|+ |....+.|.+.. +.+...++ ....+.+++..+
T Consensus 51 e~~~l~G~nGsGKSTLl~~L~---Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 127 (269)
T cd03294 51 EIFVIMGLSGSGKSTLLRCIN---RLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGL 127 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHH
Confidence 488999999999999999999 655444332210 00111010 011223332211
Q ss_pred --CCCCHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 66 --KIVPSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 66 --~~~~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
...........+.+.+...+-. ..-...++.++.|++.++.++...|++ ++||+|+.
T Consensus 128 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~i-llLDEPt~ 189 (269)
T cd03294 128 EVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDI-LLMDEAFS 189 (269)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCE-EEEcCCCc
Confidence 0011111122233333322111 112445777899999999999999999 77999993
No 275
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.94 E-value=6e-09 Score=76.39 Aligned_cols=109 Identities=26% Similarity=0.294 Sum_probs=66.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH----------HHHhcCChhh-----HHHH---HHhhcCCCCCHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR----------REIASNSEYG-----TTIL---NTIKEGKIVPSE 71 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~----------~~~~~~~~~~-----~~~~---~~l~~~~~~~~~ 71 (196)
.+.++.|++|+||||..+++. |+.-.+.|.+.+ +.+...++-. .++. .++..-.-.+..
T Consensus 29 ~i~GllG~NGAGKTTtfRmIL---glle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~ 105 (300)
T COG4152 29 EIFGLLGPNGAGKTTTFRMIL---GLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKA 105 (300)
T ss_pred eEEEeecCCCCCccchHHHHh---ccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHH
Confidence 688999999999999999999 666555554432 2222222110 0011 122211222333
Q ss_pred HHHHHHHHHH---hcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 72 VTVSLIQKEM---ESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 72 ~~~~~i~~~l---~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.....+...+ +......--++.++.+..|...|..++...|++ +.||+|+
T Consensus 106 e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeL-lILDEPF 158 (300)
T COG4152 106 EIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPEL-LILDEPF 158 (300)
T ss_pred HHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCE-EEecCCc
Confidence 3333333333 333343444777888889999888888889999 6699999
No 276
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.94 E-value=3.1e-09 Score=74.59 Aligned_cols=115 Identities=22% Similarity=0.317 Sum_probs=66.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHH------hcCChhhH-----------HHHHHhhcCCC----C
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREI------ASNSEYGT-----------TILNTIKEGKI----V 68 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~------~~~~~~~~-----------~~~~~l~~~~~----~ 68 (196)
-+++|.|||||||||+++.++ |+.....|.+.-... +...+... ++.+++.-|.. .
T Consensus 26 e~vAi~GpSGaGKSTLLnLIA---GF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL 102 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIA---GFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKL 102 (231)
T ss_pred cEEEEECCCCccHHHHHHHHH---hccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCccccc
Confidence 488999999999999999999 877766665521110 01111111 12333333211 1
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEeCCC----CCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHh
Q 029287 69 PSEVTVSLIQKEMESSDSKKFLIDGFP----RSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVL 130 (196)
Q Consensus 69 ~~~~~~~~i~~~l~~~~~~~~iid~~~----~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~ 130 (196)
. ....+.+...+...+-.++ .+++| .++.|++++++.+-..-.+ ++||+|+..+.--++
T Consensus 103 ~-a~~r~~v~~aa~~vGl~~~-~~RLP~~LSGGqRQRvALARclvR~~Pi-lLLDEPFsALdP~LR 165 (231)
T COG3840 103 N-AEQREKVEAAAAQVGLAGF-LKRLPGELSGGQRQRVALARCLVREQPI-LLLDEPFSALDPALR 165 (231)
T ss_pred C-HHHHHHHHHHHHHhChhhH-hhhCccccCchHHHHHHHHHHHhccCCe-EEecCchhhcCHHHH
Confidence 1 1222334444443333333 44444 5689999999987644444 889999966555443
No 277
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.94 E-value=3e-09 Score=78.69 Aligned_cols=110 Identities=23% Similarity=0.304 Sum_probs=62.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH---------HHHhcCCh-----hhHHHHHHhhcC---CCCCHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR---------REIASNSE-----YGTTILNTIKEG---KIVPSEV 72 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~---------~~~~~~~~-----~~~~~~~~l~~~---~~~~~~~ 72 (196)
-+++|.|++||||||+++.|+ |....+.|.+.. +.+....+ ....+.+++..+ .......
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 107 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIA---GLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAE 107 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHH
Confidence 478999999999999999999 665444443311 11111111 001222322211 0111111
Q ss_pred HHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 73 TVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 73 ~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
....+.+.+...+-. .-....++.++.|++.+++++...|++ ++||+|+.
T Consensus 108 ~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~l-llLDEPt~ 160 (220)
T cd03293 108 ARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDV-LLLDEPFS 160 (220)
T ss_pred HHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE-EEECCCCC
Confidence 122233333322111 112456778899999999999999998 77999994
No 278
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.94 E-value=2.7e-09 Score=81.69 Aligned_cols=109 Identities=20% Similarity=0.316 Sum_probs=62.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh------hhHHHHHHhhcCC---
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE------YGTTILNTIKEGK--- 66 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~------~~~~~~~~l~~~~--- 66 (196)
-+++|.|++||||||++++|+ |....+.|.+. ++.+....+ ...++.+++..+.
T Consensus 31 e~~~i~G~NGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~ 107 (277)
T PRK13652 31 SRIAVIGPNGAGKSTLFRHFN---GILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL 107 (277)
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc
Confidence 478999999999999999999 65444433221 111111111 1112333332111
Q ss_pred CCCHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 67 IVPSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 67 ~~~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
..........+.+.+...+.. .-....++.++.+++.++.++...|++ ++||+|+
T Consensus 108 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~l-lilDEPt 165 (277)
T PRK13652 108 GLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQV-LVLDEPT 165 (277)
T ss_pred CCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE-EEEeCCc
Confidence 112222222233333322211 112456778899999999999999998 7799999
No 279
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.93 E-value=1e-08 Score=76.32 Aligned_cols=32 Identities=19% Similarity=0.129 Sum_probs=27.5
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
+..++.++.|++.+++++...|++ ++||+|+.
T Consensus 123 ~~~LS~G~~qrv~laral~~~p~v-llLDEPt~ 154 (230)
T TIGR02770 123 PFQLSGGMLQRVMIALALLLEPPF-LIADEPTT 154 (230)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCE-EEEcCCcc
Confidence 345777899999999999999998 77999993
No 280
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.93 E-value=2.9e-10 Score=81.02 Aligned_cols=75 Identities=17% Similarity=0.192 Sum_probs=54.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF 89 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~ 89 (196)
-+++|.|++||||||++++|+ |....+.|.+..... .. .+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~----~i---------------------------------~~ 65 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILA---GQLIPNGDNDEWDGI----TP---------------------------------VY 65 (177)
T ss_pred CEEEEECCCCChHHHHHHHHH---cCCCCCCcEEEECCE----EE---------------------------------EE
Confidence 488999999999999999999 876666655432110 00 00
Q ss_pred EEe--CCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287 90 LID--GFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM 125 (196)
Q Consensus 90 iid--~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~ 125 (196)
+.. .++.++.|++.+++++...|++ ++||+|+..+
T Consensus 66 ~~q~~~LSgGq~qrv~laral~~~p~l-llLDEPts~L 102 (177)
T cd03222 66 KPQYIDLSGGELQRVAIAAALLRNATF-YLFDEPSAYL 102 (177)
T ss_pred EcccCCCCHHHHHHHHHHHHHhcCCCE-EEEECCcccC
Confidence 000 0777899999999999999998 7799999433
No 281
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.93 E-value=1.6e-09 Score=81.30 Aligned_cols=109 Identities=22% Similarity=0.269 Sum_probs=60.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh-----hhHHHHHHhhcCC---C
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE-----YGTTILNTIKEGK---I 67 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~-----~~~~~~~~l~~~~---~ 67 (196)
-+++|.|++||||||++++|+ |....+.|.+. +..+...++ ...++.+++.... .
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 104 (242)
T cd03295 28 EFLVLIGPSGSGKTTTMKMIN---RLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLK 104 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcC
Confidence 478999999999999999999 65444433221 111111111 0112333332110 0
Q ss_pred CCHHHHHHHHHHHHhcCCCC-----cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 68 VPSEVTVSLIQKEMESSDSK-----KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 68 ~~~~~~~~~i~~~l~~~~~~-----~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.........+.+.+...+-. .--...++.++.|++.+++++...|++ ++||+|+
T Consensus 105 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~l-lllDEPt 163 (242)
T cd03295 105 WPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPL-LLMDEPF 163 (242)
T ss_pred CCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCE-EEecCCc
Confidence 11111112223333321111 112344677899999999999999998 7899999
No 282
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.93 E-value=5.5e-10 Score=79.43 Aligned_cols=98 Identities=20% Similarity=0.253 Sum_probs=55.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF 89 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~ 89 (196)
-+++|.|++||||||+++.|+ |....+.|.+...............+..+.. ...+..... ....+ .
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~--~~~~~~~~~--~t~~e-----~- 95 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLL---RLYDPTSGEILIDGVDLRDLDLESLRKNIAY--VPQDPFLFS--GTIRE-----N- 95 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHH---cCCCCCCCEEEECCEEhhhcCHHHHHhhEEE--EcCCchhcc--chHHH-----H-
Confidence 478999999999999999999 7665555544221100000000011111100 000000000 00000 0
Q ss_pred EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 90 LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 90 iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
+ ++.++.+++.+++++...|++ ++||+|+..
T Consensus 96 l---LS~G~~~rl~la~al~~~p~l-lllDEP~~g 126 (171)
T cd03228 96 I---LSGGQRQRIAIARALLRDPPI-LILDEATSA 126 (171)
T ss_pred h---hCHHHHHHHHHHHHHhcCCCE-EEEECCCcC
Confidence 0 777899999999999999998 789999943
No 283
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.93 E-value=4.4e-07 Score=73.04 Aligned_cols=41 Identities=20% Similarity=0.387 Sum_probs=33.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE 47 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~ 47 (196)
+.|++|++.|++||||||++..|+..+|+.++-..|.+++.
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~ 293 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREV 293 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHH
Confidence 45899999999999999999999999999855444555543
No 284
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.93 E-value=2.4e-08 Score=72.76 Aligned_cols=116 Identities=20% Similarity=0.364 Sum_probs=61.0
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHHHh---CCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCH--------HHHH
Q 029287 6 GKGPFICFVLGGPGSGKGTQCAKIVKNY---GLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPS--------EVTV 74 (196)
Q Consensus 6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~ 74 (196)
...|..+++.|+|||||||++..+.+.+ ++..++.|++.... +....+... +..... ....
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~-----p~~~~~~~~---~~~~~~~~~~~~a~~~~~ 83 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH-----PDYDELLKA---DPDEASELTQKEASRLAE 83 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS-----TTHHHHHHH---HCCCTHHHHHHHHHHHHH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc-----cchhhhhhh---hhhhhHHHHHHHHHHHHH
Confidence 4678899999999999999999999987 67788887653211 111111111 111110 1122
Q ss_pred HHHHHHHhcCCCCcEEEeCCCCCHHHHH-HHHH--HhCCCCcEEEEeecChHHHHHHHhhc
Q 029287 75 SLIQKEMESSDSKKFLIDGFPRSEENRA-AFER--IMGAEPDIVLFFDCPEEEMVNRVLNR 132 (196)
Q Consensus 75 ~~i~~~l~~~~~~~~iid~~~~~~~~~~-~~~~--~~~~~p~~~i~ld~~~~~~~~Rl~~r 132 (196)
..+...+. ....+++|+-........ .+.. ..+....+ +++.+|++....|..+|
T Consensus 84 ~~~~~a~~--~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l-~~v~~~~e~s~~rv~~R 141 (199)
T PF06414_consen 84 KLIEYAIE--NRYNIIFEGTLSNPSKLRKLIREAKAAGYKVEL-YYVAVPPELSIERVRQR 141 (199)
T ss_dssp HHHHHHHH--CT--EEEE--TTSSHHHHHHHHHHHCTT-EEEE-EEE---HHHHHHHHHHH
T ss_pred HHHHHHHH--cCCCEEEecCCCChhHHHHHHHHHHcCCceEEE-EEEECCHHHHHHHHHHH
Confidence 33333344 345678897665533333 2222 23444454 88999999999999988
No 285
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.93 E-value=4.5e-09 Score=80.96 Aligned_cols=109 Identities=22% Similarity=0.303 Sum_probs=62.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH------------------HHHHHhcCCh------hhHHHHHHhhcC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL------------------LRREIASNSE------YGTTILNTIKEG 65 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~------------------~~~~~~~~~~------~~~~~~~~l~~~ 65 (196)
-+++|.|++||||||+++.|. |....+.|++ .++.+....+ ...++.+.+..+
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~ 110 (290)
T PRK13634 34 SYVAIIGHTGSGKSTLLQHLN---GLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFG 110 (290)
T ss_pred CEEEEECCCCCcHHHHHHHHh---cCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHH
Confidence 488999999999999999999 6544433322 1111111111 112344444322
Q ss_pred C---CCCHHHHHHHHHHHHhcCCCC-c---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 66 K---IVPSEVTVSLIQKEMESSDSK-K---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 66 ~---~~~~~~~~~~i~~~l~~~~~~-~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
. ..........+.+.+...+-. . .-...++.++.|++.++.++...|++ ++||+|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~l-lllDEPt 173 (290)
T PRK13634 111 PMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEV-LVLDEPT 173 (290)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE-EEEECCc
Confidence 1 112222222333333322221 1 12445667799999999999999999 7799999
No 286
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=5.5e-09 Score=84.99 Aligned_cols=109 Identities=21% Similarity=0.367 Sum_probs=69.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCCC-CH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKIV-PS 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~~-~~ 70 (196)
..++|.|+|||||||+.+.|+ |......|++ +++.+...++ ...++++++.-+... .+
T Consensus 348 ~~talvG~SGaGKSTLl~lL~---G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~ 424 (559)
T COG4988 348 QLTALVGASGAGKSTLLNLLL---GFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASD 424 (559)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCH
Confidence 588999999999999999999 6554443333 3344443333 234467777665553 33
Q ss_pred HHHHHHH-----HHHHhcCCC-CcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 71 EVTVSLI-----QKEMESSDS-KKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 71 ~~~~~~i-----~~~l~~~~~-~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+...+.+ .+.+...++ +..|-+ +.+.++.||+++++++..++++ +++|+|+
T Consensus 425 e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l-~llDEpT 484 (559)
T COG4988 425 EEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASL-LLLDEPT 484 (559)
T ss_pred HHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCE-EEecCCc
Confidence 3333222 222222112 333444 3667899999999999988888 7799998
No 287
>PLN03232 ABC transporter C family member; Provisional
Probab=98.92 E-value=2.6e-09 Score=97.91 Aligned_cols=112 Identities=14% Similarity=0.183 Sum_probs=70.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh----CCceechhHH-------HHHHHhcCCh----hhHHHHHHhhcCCCCCHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY----GLTHLSAGEL-------LRREIASNSE----YGTTILNTIKEGKIVPSEVTV 74 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~----~~~~i~~~~~-------~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~ 74 (196)
-.++|+|++||||||+++.|.+.+ |-..++.-++ +|+.+...++ +..++++++..+....++.+.
T Consensus 1263 ekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~ 1342 (1495)
T PLN03232 1263 EKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLW 1342 (1495)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHH
Confidence 488999999999999999999554 2222222111 3444443333 233578888765555555443
Q ss_pred HHHHH-----HHhc-C-CCCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 75 SLIQK-----EMES-S-DSKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 75 ~~i~~-----~l~~-~-~~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+.+.. .+.. . +.+..+-+ .++.+++|++.+++++..+|.+ ++||+++
T Consensus 1343 ~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~I-LILDEAT 1399 (1495)
T PLN03232 1343 EALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKI-LVLDEAT 1399 (1495)
T ss_pred HHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCE-EEEECCc
Confidence 33222 1111 1 12333333 3777899999999999999998 7799988
No 288
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.92 E-value=5.7e-09 Score=79.39 Aligned_cols=110 Identities=18% Similarity=0.291 Sum_probs=61.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh-----hhHHHHHHhhcCCC---
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE-----YGTTILNTIKEGKI--- 67 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~-----~~~~~~~~l~~~~~--- 67 (196)
-+++|.|++||||||++++|+ |....+.|.+. +..+...++ ....+.+++..+..
T Consensus 34 e~~~i~G~nGsGKSTLl~~i~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~ 110 (265)
T PRK10253 34 HFTAIIGPNGCGKSTLLRTLS---RLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQ 110 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHc---CCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCccccc
Confidence 478999999999999999999 66544433221 111111111 11233444432110
Q ss_pred --C--CHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 68 --V--PSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 68 --~--~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
. ........+.+.+...+-. .--+..++.++.|++.+++++...|++ ++||+|+.
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~l-lllDEPt~ 172 (265)
T PRK10253 111 PLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAI-MLLDEPTT 172 (265)
T ss_pred ccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCE-EEEeCccc
Confidence 0 0111112223333321111 112455778899999999999999999 77999993
No 289
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.92 E-value=1e-09 Score=80.26 Aligned_cols=112 Identities=15% Similarity=0.214 Sum_probs=60.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCCh-----hhHHHHHHhhcCCCCCHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNSE-----YGTTILNTIKEGKIVPSE 71 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~~-----~~~~~~~~l~~~~~~~~~ 71 (196)
-+++|.|++||||||+++.|+ |....+.|.+. ++......+ ....+.+++.........
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~---G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~ 104 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILA---GLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGP 104 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcCc
Confidence 488999999999999999999 65444443321 111111000 001222222211100000
Q ss_pred HHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287 72 VTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM 125 (196)
Q Consensus 72 ~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~ 125 (196)
.....+.+.+....-. ..-+..++.++.|++.++.++...|++ +++|+|+..+
T Consensus 105 ~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~l-lllDEPt~~L 160 (204)
T PRK13538 105 GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPL-WILDEPFTAI 160 (204)
T ss_pred cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCE-EEEeCCCccC
Confidence 0111222233321111 112445777899999999999999999 7799998443
No 290
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.92 E-value=4.9e-10 Score=79.84 Aligned_cols=96 Identities=19% Similarity=0.272 Sum_probs=55.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhh---cCCCCCHHHHHHHHHHHHhcCCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIK---EGKIVPSEVTVSLIQKEMESSDS 86 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~i~~~l~~~~~ 86 (196)
-+++|.|++||||||+++.|+ |....+.|.+...............+..+. ....+....+.+ .+
T Consensus 29 e~~~i~G~nGsGKStLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~----~l----- 96 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLIL---GLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAE----NI----- 96 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHH---hccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHH----HC-----
Confidence 478999999999999999999 765555554432110000000001111110 000000000000 00
Q ss_pred CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287 87 KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM 125 (196)
Q Consensus 87 ~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~ 125 (196)
++.++.|++.+++++...|++ ++||+|+.-+
T Consensus 97 -------LS~G~~qrv~la~al~~~p~~-lllDEPt~~L 127 (173)
T cd03246 97 -------LSGGQRQRLGLARALYGNPRI-LVLDEPNSHL 127 (173)
T ss_pred -------cCHHHHHHHHHHHHHhcCCCE-EEEECCcccc
Confidence 777899999999999999998 7799999443
No 291
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.92 E-value=2e-09 Score=98.20 Aligned_cols=112 Identities=25% Similarity=0.358 Sum_probs=69.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCc---------------------------------------------------ee
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLT---------------------------------------------------HL 38 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~---------------------------------------------------~i 38 (196)
..++|+|++||||||++++|...|... +.
T Consensus 1195 ~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1274 (1466)
T PTZ00265 1195 KTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFK 1274 (1466)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 588999999999999999999776531 00
Q ss_pred chhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCC-CCHHHHHHHHH-----HHHhc-CCC-CcEEEe
Q 029287 39 SAGEL--------------LRREIASNSE----YGTTILNTIKEGKI-VPSEVTVSLIQ-----KEMES-SDS-KKFLID 92 (196)
Q Consensus 39 ~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~-~~~~~~~~~i~-----~~l~~-~~~-~~~iid 92 (196)
+.|.+ +|+.+...++ +..++++++..|.. ..++.+...+. +.+.. +.+ +..|-+
T Consensus 1275 ~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe 1354 (1466)
T PTZ00265 1275 NSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGP 1354 (1466)
T ss_pred CCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCC
Confidence 11211 3444443333 34557888887744 34443322221 11111 111 333322
Q ss_pred ---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 93 ---GFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 93 ---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.++.+++||+++++++...|.+ ++||+++
T Consensus 1355 ~G~~LSGGQkQRIaIARALlr~p~I-LLLDEaT 1386 (1466)
T PTZ00265 1355 YGKSLSGGQKQRIAIARALLREPKI-LLLDEAT 1386 (1466)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCE-EEEeCcc
Confidence 3666799999999999999998 7799998
No 292
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.92 E-value=5.7e-09 Score=80.34 Aligned_cols=109 Identities=22% Similarity=0.253 Sum_probs=61.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------------HHHHhcCCh------hhHHHHHHhhc
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------------RREIASNSE------YGTTILNTIKE 64 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------------~~~~~~~~~------~~~~~~~~l~~ 64 (196)
-+++|.|++||||||++++|+ |....+.|.+. ++.+....+ ....+.+++..
T Consensus 38 e~~~l~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~ 114 (289)
T PRK13645 38 KVTCVIGTTGSGKSTMIQLTN---GLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAF 114 (289)
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHH
Confidence 478999999999999999999 65443333221 111111111 11133443322
Q ss_pred CC---CCCHHHHHHHHHHHHhcCCC----CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 65 GK---IVPSEVTVSLIQKEMESSDS----KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 65 ~~---~~~~~~~~~~i~~~l~~~~~----~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+. ..........+...+...+- ..--+..++.++.|++.+++++...|++ ++||+|+
T Consensus 115 ~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~l-LlLDEPt 178 (289)
T PRK13645 115 GPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNT-LVLDEPT 178 (289)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCE-EEEeCCc
Confidence 11 11111111222223322111 1112445777899999999999999998 7899999
No 293
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.1e-09 Score=77.08 Aligned_cols=111 Identities=16% Similarity=0.193 Sum_probs=66.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChh--hHHHHHHhhcCCCCCHH----------------H
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEY--GTTILNTIKEGKIVPSE----------------V 72 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~----------------~ 72 (196)
.+.|+||+||||||++++|+ |+...+.|++..+........ .....-++.+..-+..+ .
T Consensus 30 ~~~i~G~NG~GKTtLLRila---GLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~ 106 (209)
T COG4133 30 ALQITGPNGAGKTTLLRILA---GLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSG 106 (209)
T ss_pred EEEEECCCCCcHHHHHHHHH---cccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCCC
Confidence 45679999999999999999 998888888765532221111 11222223221111100 0
Q ss_pred HHHHHHHHHhcCCC---CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287 73 TVSLIQKEMESSDS---KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM 125 (196)
Q Consensus 73 ~~~~i~~~l~~~~~---~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~ 125 (196)
....+.+++...+- ...-+..++.+++.++++++.+....++ ++||+|+.-+
T Consensus 107 ~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pL-WiLDEP~taL 161 (209)
T COG4133 107 NAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPL-WILDEPFTAL 161 (209)
T ss_pred chhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCc-eeecCccccc
Confidence 01223333433222 2223445666788899999998878888 8899998543
No 294
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=98.92 E-value=3.1e-10 Score=80.63 Aligned_cols=157 Identities=20% Similarity=0.299 Sum_probs=86.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH---------------HHHHhcCChhhHH-----HHHHhhc----C
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL---------------RREIASNSEYGTT-----ILNTIKE----G 65 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~---------------~~~~~~~~~~~~~-----~~~~l~~----~ 65 (196)
=++++.||+|+||||.-.++. |+...+.|.+. +-.+...++...- ..+++.. .
T Consensus 31 EiVGLLGPNGAGKTT~Fymi~---Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~ 107 (243)
T COG1137 31 EIVGLLGPNGAGKTTTFYMIV---GLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIR 107 (243)
T ss_pred cEEEEECCCCCCceeEEEEEE---EEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhh
Confidence 489999999999999877766 77666665442 1122222221111 1222211 1
Q ss_pred CCCCH----HHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh-----------HHHHHHHh
Q 029287 66 KIVPS----EVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE-----------EEMVNRVL 130 (196)
Q Consensus 66 ~~~~~----~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~-----------~~~~~Rl~ 130 (196)
..... ....+.+.+.+.......--...++.++.-+..+++++...|.+ ++||+|+ +.++..+.
T Consensus 108 ~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~f-iLLDEPFAGVDPiaV~dIq~iI~~L~ 186 (243)
T COG1137 108 EKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKF-ILLDEPFAGVDPIAVIDIQRIIKHLK 186 (243)
T ss_pred hcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCE-EEecCCccCCCchhHHHHHHHHHHHH
Confidence 10111 11122233333322111112334667788999999999999999 7799999 44555555
Q ss_pred hccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287 131 NRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ 183 (196)
Q Consensus 131 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~ 183 (196)
.|. .-. ..-.|+...-..+++++.++. |-+.++++++.+.
T Consensus 187 ~rg-------iGv------LITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 187 DRG-------IGV------LITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred hCC-------ceE------EEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 552 111 122334433444566655544 6688999998743
No 295
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.92 E-value=1.8e-09 Score=79.31 Aligned_cols=111 Identities=22% Similarity=0.282 Sum_probs=63.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH------------HHHHhcCCh-----hhHHHHHHhhcCCC--CC-
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL------------RREIASNSE-----YGTTILNTIKEGKI--VP- 69 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~------------~~~~~~~~~-----~~~~~~~~l~~~~~--~~- 69 (196)
-+++|.|++||||||++++|+ |....+.|.+. ++.+....+ ....+.+++..... ..
T Consensus 25 e~~~l~G~nGsGKSTLl~~l~---gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~ 101 (211)
T cd03298 25 EITAIVGPSGSGKSTLLNLIA---GFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKL 101 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccCc
Confidence 488999999999999999999 65544444321 111111111 12234444432211 00
Q ss_pred HHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 70 SEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 70 ~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
.......+.+.+...+-. .-....++.++.|++.+++++...|++ ++||+|+..
T Consensus 102 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~l-lllDEP~~~ 158 (211)
T cd03298 102 TAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPV-LLLDEPFAA 158 (211)
T ss_pred cHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE-EEEcCCccc
Confidence 111112233333321111 112456778899999999999999998 779999943
No 296
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.92 E-value=5e-09 Score=90.02 Aligned_cols=109 Identities=21% Similarity=0.321 Sum_probs=68.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCC--CCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGK--IVP 69 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~--~~~ 69 (196)
-.++|.|++||||||+++.|...| ..+.|.+ +++.+...++ +..++++++..+. ..+
T Consensus 501 ~~vaIvG~SGsGKSTLlklL~gl~---~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~ 577 (708)
T TIGR01193 501 SKTTIVGMSGSGKSTLAKLLVGFF---QARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVS 577 (708)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC---CCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCC
Confidence 478999999999999999999444 3332222 2333333322 3446788887652 234
Q ss_pred HHHHHHHHH-----HHHhc-CC-CCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 70 SEVTVSLIQ-----KEMES-SD-SKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 70 ~~~~~~~i~-----~~l~~-~~-~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
++...+.+. +.+.. .. .+..+-+ .++.++.|++.+++++..+|++ ++||+|+
T Consensus 578 ~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~i-liLDE~T 639 (708)
T TIGR01193 578 QDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKV-LILDEST 639 (708)
T ss_pred HHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCE-EEEeCcc
Confidence 443332222 11211 11 2333333 3667899999999999999999 7799999
No 297
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.92 E-value=2.2e-09 Score=81.36 Aligned_cols=110 Identities=20% Similarity=0.308 Sum_probs=60.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh-----hhHHHHHHhhcCCC---
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE-----YGTTILNTIKEGKI--- 67 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~-----~~~~~~~~l~~~~~--- 67 (196)
-+++|.|++||||||++++|+ |....+.|.+. ++......+ ....+.+++..+..
T Consensus 29 e~~~i~G~nGsGKSTLl~~i~---G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 105 (258)
T PRK13548 29 EVVAILGPNGAGKSTLLRALS---GELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHG 105 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccC
Confidence 478999999999999999999 65544433221 111111111 11123444332111
Q ss_pred CCHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhC------CCCcEEEEeecChH
Q 029287 68 VPSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMG------AEPDIVLFFDCPEE 123 (196)
Q Consensus 68 ~~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~------~~p~~~i~ld~~~~ 123 (196)
.........+...+...+-. .-.+..++.++.|++.++.++. ..|++ ++||+|+.
T Consensus 106 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~l-llLDEPt~ 169 (258)
T PRK13548 106 LSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRW-LLLDEPTS 169 (258)
T ss_pred CCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCE-EEEeCCcc
Confidence 11111112223333321111 1124457778999999999988 48888 78999993
No 298
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.92 E-value=3.7e-09 Score=79.92 Aligned_cols=31 Identities=26% Similarity=0.505 Sum_probs=27.1
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
...++.++.|++.++.++...|++ ++||+|+
T Consensus 151 ~~~LS~G~~qrv~la~al~~~p~l-lllDEPt 181 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMVTQPEI-LMLDEPA 181 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCc
Confidence 344777899999999999999999 7799999
No 299
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.92 E-value=7.2e-09 Score=78.99 Aligned_cols=31 Identities=32% Similarity=0.537 Sum_probs=26.9
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
...++.++.|++.+++++...|++ ++||+|+
T Consensus 141 ~~~LSgGq~qrv~laral~~~p~l-llLDEPt 171 (269)
T PRK11831 141 PSELSGGMARRAALARAIALEPDL-IMFDEPF 171 (269)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCC
Confidence 345677899999999999999998 7799999
No 300
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=8.6e-09 Score=83.20 Aligned_cols=112 Identities=22% Similarity=0.330 Sum_probs=69.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh---CCceechhHH-------HHHHHhcCChhh----HHHHHHhhcCCCC-CHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY---GLTHLSAGEL-------LRREIASNSEYG----TTILNTIKEGKIV-PSEVTV 74 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~---~~~~i~~~~~-------~~~~~~~~~~~~----~~~~~~l~~~~~~-~~~~~~ 74 (196)
-.++|.|++||||||+.+.|.+.+ |-..++.-++ +|+.+...++.. .++-.++..|.+- .++.+.
T Consensus 379 ekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~ 458 (591)
T KOG0057|consen 379 EKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVV 458 (591)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHH
Confidence 578999999999999999999887 4334443333 455555555433 3344455555443 334333
Q ss_pred HHHHHH-----HhcC-C-CCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 75 SLIQKE-----MESS-D-SKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 75 ~~i~~~-----l~~~-~-~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+...++ +..- + ....+-+ .++.+++|++++++++..+|++ +++|+++
T Consensus 459 e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~I-l~~DEaT 515 (591)
T KOG0057|consen 459 EACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPI-LLLDEAT 515 (591)
T ss_pred HHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCe-EEecCcc
Confidence 332221 1111 1 1222222 2556799999999999999998 7799988
No 301
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.91 E-value=3.5e-09 Score=89.24 Aligned_cols=112 Identities=21% Similarity=0.300 Sum_probs=69.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh----CCceechhH-------HHHHHHhcCCh----hhHHHHHHhhcCCCCCHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY----GLTHLSAGE-------LLRREIASNSE----YGTTILNTIKEGKIVPSEVTV 74 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~----~~~~i~~~~-------~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~ 74 (196)
-.++|+|++||||||+++.|...+ |-..++..+ .+++.+...++ +..++++++..+....++...
T Consensus 368 e~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~ 447 (592)
T PRK10790 368 GFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVW 447 (592)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHH
Confidence 478999999999999999999554 222222211 12333333332 234578888776655554443
Q ss_pred HHHHH-----HHhcC--CCCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 75 SLIQK-----EMESS--DSKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 75 ~~i~~-----~l~~~--~~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+.+.. .+..- +.+..+-+ .++.++.|++.+++++..+|++ ++||+|+
T Consensus 448 ~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~i-lllDEpt 504 (592)
T PRK10790 448 QALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQI-LILDEAT 504 (592)
T ss_pred HHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCE-EEEeCCc
Confidence 32221 11111 11333322 3666799999999999999998 7799999
No 302
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.91 E-value=4.7e-09 Score=87.36 Aligned_cols=112 Identities=18% Similarity=0.309 Sum_probs=67.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCC-CCH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKI-VPS 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~-~~~ 70 (196)
-.++|+|++||||||+++.|. |....+.|.+ +++.....++ ...++++++..+.. ..+
T Consensus 349 ~~~~ivG~sGsGKSTL~~ll~---g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~ 425 (529)
T TIGR02857 349 ERVALVGPSGAGKSTLLNLLL---GFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASD 425 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCH
Confidence 588999999999999999999 4443333322 2233332222 23357777776543 333
Q ss_pred HHHHHHHH-----HHHhcC-C-CCcEEE---eCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287 71 EVTVSLIQ-----KEMESS-D-SKKFLI---DGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM 125 (196)
Q Consensus 71 ~~~~~~i~-----~~l~~~-~-~~~~ii---d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~ 125 (196)
+...+.+. +.+..- . .+..+- ..++.++.|++.+++++..+|++ ++||+|+..+
T Consensus 426 ~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~i-lilDE~ts~l 489 (529)
T TIGR02857 426 AEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPL-LLLDEPTAHL 489 (529)
T ss_pred HHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCE-EEEeCccccc
Confidence 33322211 111111 1 122222 23667799999999999999998 7799998443
No 303
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.91 E-value=1.6e-09 Score=80.17 Aligned_cols=111 Identities=21% Similarity=0.293 Sum_probs=61.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------------H-HHHhcCChh-----hHHHHHHhhcC-
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------------R-REIASNSEY-----GTTILNTIKEG- 65 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------------~-~~~~~~~~~-----~~~~~~~l~~~- 65 (196)
-+++|.|++||||||++++|+ |....+.|.+. + +.+....+. ...+.+.+...
T Consensus 32 ~~~~i~G~nGsGKSTLl~~i~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~ 108 (221)
T TIGR02211 32 EIVAIVGSSGSGKSTLLHLLG---GLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPL 108 (221)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHH
Confidence 478999999999999999999 65443333221 1 111111110 11233333211
Q ss_pred --CCCCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 66 --KIVPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 66 --~~~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
...........+.+.+...+-.. -....++.++.|++.++.++...|++ ++||+|+.-
T Consensus 109 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~i-lllDEPt~~ 171 (221)
T TIGR02211 109 LIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSL-VLADEPTGN 171 (221)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCE-EEEeCCCCc
Confidence 01111111122233333221111 12344667799999999999999998 779999943
No 304
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.91 E-value=2e-09 Score=79.07 Aligned_cols=110 Identities=24% Similarity=0.283 Sum_probs=60.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCChh-----hHHHHHHhhcC---CCCC
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNSEY-----GTTILNTIKEG---KIVP 69 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~~~-----~~~~~~~l~~~---~~~~ 69 (196)
+++|.|++||||||++++|+ |....+.|.+. ++......+. ...+.+++... ....
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 103 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILA---TLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIP 103 (211)
T ss_pred cEEEECCCCCCHHHHHHHHh---CCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCC
Confidence 88999999999999999999 65544433321 1111111110 11222222110 0011
Q ss_pred HHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 70 SEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 70 ~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
.....+.+.+.+...+-. ......++.++.|++.++.++...|++ ++||+|+.-
T Consensus 104 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l-lllDEPt~~ 160 (211)
T cd03264 104 SKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSI-LIVDEPTAG 160 (211)
T ss_pred HHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCccc
Confidence 111112222333321111 112445777899999999999999999 779999943
No 305
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.91 E-value=3.1e-09 Score=81.45 Aligned_cols=109 Identities=23% Similarity=0.310 Sum_probs=60.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH------------------HHHHHhcCChh------hHHHHHHhhcC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL------------------LRREIASNSEY------GTTILNTIKEG 65 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~------------------~~~~~~~~~~~------~~~~~~~l~~~ 65 (196)
-+++|.|++||||||++++|+ |....+.|.+ .++.+....+. ...+.+++..+
T Consensus 34 e~~~l~G~nGsGKSTLl~~i~---Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~ 110 (280)
T PRK13649 34 SYTAFIGHTGSGKSTIMQLLN---GLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFG 110 (280)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHH
Confidence 478999999999999999999 6543333321 11111111111 11233333211
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCCC----cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 66 ---KIVPSEVTVSLIQKEMESSDSK----KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 66 ---~~~~~~~~~~~i~~~l~~~~~~----~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
...........+.+.+...... ..-+..++.++.|++.++.++...|++ ++||+|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~l-llLDEPt 173 (280)
T PRK13649 111 PQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKI-LVLDEPT 173 (280)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE-EEEeCCc
Confidence 0111111222223333321111 112445777899999999999999999 7799999
No 306
>PLN03130 ABC transporter C family member; Provisional
Probab=98.91 E-value=2.6e-09 Score=98.30 Aligned_cols=112 Identities=13% Similarity=0.153 Sum_probs=70.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh----CCceechhH-------HHHHHHhcCCh----hhHHHHHHhhcCCCCCHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY----GLTHLSAGE-------LLRREIASNSE----YGTTILNTIKEGKIVPSEVTV 74 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~----~~~~i~~~~-------~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~ 74 (196)
-.++|+|++||||||+++.|.+-+ |-..++.-+ -+|+.+...++ +..++++++..+....++.+.
T Consensus 1266 ekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~ 1345 (1622)
T PLN03130 1266 EKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLW 1345 (1622)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHH
Confidence 489999999999999999999555 222222211 13444443333 233578888766555554443
Q ss_pred HHHHH-----HHhc-C-CCCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 75 SLIQK-----EMES-S-DSKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 75 ~~i~~-----~l~~-~-~~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+.+.. .+.. . +.+..|-+ .++.+++|++.+++++..+|.+ ++||+++
T Consensus 1346 ~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~I-LILDEAT 1402 (1622)
T PLN03130 1346 ESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKI-LVLDEAT 1402 (1622)
T ss_pred HHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCE-EEEECCC
Confidence 33222 1211 1 12333333 3677899999999999999998 7799988
No 307
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.91 E-value=1.4e-08 Score=77.10 Aligned_cols=32 Identities=16% Similarity=0.359 Sum_probs=27.7
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
...++.++.|++.+++++...|++ ++||+|+.
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~l-lllDEPt~ 181 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKV-ILADEPIA 181 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCE-EEecCccc
Confidence 445777899999999999999998 77999993
No 308
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.91 E-value=9.9e-10 Score=90.89 Aligned_cols=108 Identities=18% Similarity=0.211 Sum_probs=62.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH---------------HHhcCCh-----hhHHHHHHhhcCCCCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR---------------EIASNSE-----YGTTILNTIKEGKIVP 69 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~---------------~~~~~~~-----~~~~~~~~l~~~~~~~ 69 (196)
-+++|.|++||||||++++|+ |....+.|.+... .+....+ ......+++..+....
T Consensus 38 e~~~liG~NGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 114 (510)
T PRK15439 38 EVHALLGGNGAGKSTLMKIIA---GIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKR 114 (510)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccc
Confidence 478999999999999999999 7654444433211 0011111 1112333333221111
Q ss_pred HHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 70 SEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 70 ~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
....+.+.+.+....-. ..-+..++.++.|++.++.++...|++ ++||+|+
T Consensus 115 -~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~l-llLDEPt 168 (510)
T PRK15439 115 -QASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRI-LILDEPT 168 (510)
T ss_pred -hHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCE-EEEECCC
Confidence 11112233333322211 112445777899999999999999998 8899999
No 309
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.91 E-value=8.6e-10 Score=80.99 Aligned_cols=111 Identities=22% Similarity=0.295 Sum_probs=61.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH----------HHHHhcCCh-----hhHHHHHHhhcC---CCCCHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL----------RREIASNSE-----YGTTILNTIKEG---KIVPSE 71 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~----------~~~~~~~~~-----~~~~~~~~l~~~---~~~~~~ 71 (196)
-+++|+|++||||||+++.|+ |....+.|.+. ++......+ ....+.+++... ......
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 103 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMIL---GIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKE 103 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChH
Confidence 478999999999999999999 76544444321 111111111 111223332211 011111
Q ss_pred HHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 72 VTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 72 ~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
.....+.+.+...+-.. --...++.++.+++.++.++...|++ ++||+|+.-
T Consensus 104 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~-lllDEP~~~ 158 (210)
T cd03269 104 EARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPEL-LILDEPFSG 158 (210)
T ss_pred HHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCCcC
Confidence 11222333333222111 12345777899999999999999998 779999943
No 310
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.91 E-value=2.3e-09 Score=80.87 Aligned_cols=108 Identities=20% Similarity=0.249 Sum_probs=60.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH---HHhcCCh-------hhHHHHHHhhcCCCCCHHHHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR---EIASNSE-------YGTTILNTIKEGKIVPSEVTVSLIQK 79 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~---~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~i~~ 79 (196)
-+++|.|++||||||++++|+ |....+.|.+... .+....+ ....+.+.+........... ..+.+
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~---Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~l~ 106 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVL---GLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDI-LPALK 106 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHH-HHHHH
Confidence 478999999999999999999 7655555543211 0110000 01122333221111111111 11222
Q ss_pred HHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 80 EMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 80 ~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.+........-...++.++.+++.++.++...|++ ++||+|+
T Consensus 107 ~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~l-llLDEPt 148 (251)
T PRK09544 107 RVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQL-LVLDEPT 148 (251)
T ss_pred HcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCC
Confidence 22221111112445777899999999999999998 7899999
No 311
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.91 E-value=9.4e-09 Score=77.70 Aligned_cols=34 Identities=12% Similarity=0.099 Sum_probs=28.4
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM 125 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~ 125 (196)
...++.++.|++.+++++...|++ ++||+|+..+
T Consensus 138 ~~~LS~Gq~qrv~laral~~~p~l-LlLDEPt~~L 171 (254)
T PRK10418 138 PFEMSGGMLQRMMIALALLCEAPF-IIADEPTTDL 171 (254)
T ss_pred CcccCHHHHHHHHHHHHHhcCCCE-EEEeCCCccc
Confidence 345777899999999999999998 8899999433
No 312
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.91 E-value=2.5e-09 Score=79.28 Aligned_cols=109 Identities=19% Similarity=0.326 Sum_probs=62.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH---------HHHHhcCChh-------hHHHHHHhhcCC-----CC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL---------RREIASNSEY-------GTTILNTIKEGK-----IV 68 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~---------~~~~~~~~~~-------~~~~~~~l~~~~-----~~ 68 (196)
-+++|.|++||||||+++.|+ |....+.|.+. ++.+...++. ...+.+++..+. ..
T Consensus 7 e~~~l~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~ 83 (223)
T TIGR03771 7 ELLGLLGPNGAGKTTLLRAIL---GLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWL 83 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccc
Confidence 589999999999999999999 65444444221 1111111111 122334433221 00
Q ss_pred --CHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 69 --PSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 69 --~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
........+...++...-. ..-+..++.++.|++.+++++...|++ +++|+|+
T Consensus 84 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l-lilDEP~ 141 (223)
T TIGR03771 84 RRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSV-LLLDEPF 141 (223)
T ss_pred cCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCc
Confidence 1111112233333321111 112445777899999999999999999 7799999
No 313
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.90 E-value=1.7e-09 Score=80.20 Aligned_cols=111 Identities=20% Similarity=0.172 Sum_probs=61.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH-------HhcCChhhHHHHHHhhcC---CCCCHHHHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE-------IASNSEYGTTILNTIKEG---KIVPSEVTVSLIQK 79 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~i~~ 79 (196)
-+++|.|++||||||+++.|+ |....+.|++.... .........++.+++... ...........+.+
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~---G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ 125 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLA---GIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDE 125 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 478999999999999999999 76554444331100 000011111222222211 00111111122222
Q ss_pred HHhc---CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 80 EMES---SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 80 ~l~~---~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
.+.. .......+..++.++.|++.+++++...|++ ++||+|+..
T Consensus 126 ~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l-lllDEP~~g 172 (224)
T cd03220 126 IIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDI-LLIDEVLAV 172 (224)
T ss_pred HHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCccc
Confidence 2222 1111112456778899999999999999998 779999943
No 314
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.90 E-value=5.1e-09 Score=77.06 Aligned_cols=112 Identities=23% Similarity=0.327 Sum_probs=62.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH------------HHHhcCChh-----hHHHHHHhhcCC---CCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR------------REIASNSEY-----GTTILNTIKEGK---IVP 69 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~------------~~~~~~~~~-----~~~~~~~l~~~~---~~~ 69 (196)
-+++|.|++||||||+++.|+ |....+.|.+.. +.+....+. ...+.+++..+. ...
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~---G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 103 (213)
T cd03301 27 EFVVLLGPSGCGKTTTLRMIA---GLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVP 103 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCCC
Confidence 478999999999999999999 665444443211 001111110 112233332110 111
Q ss_pred HHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287 70 SEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM 125 (196)
Q Consensus 70 ~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~ 125 (196)
.....+.+.+.+...+-.. .-+..++.++.|++.+++++...|++ ++||+|+.-+
T Consensus 104 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l-lllDEPt~~L 161 (213)
T cd03301 104 KDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKV-FLMDEPLSNL 161 (213)
T ss_pred HHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCcccC
Confidence 1222222333333221111 12345777899999999999999998 7799999443
No 315
>PRK10908 cell division protein FtsE; Provisional
Probab=98.90 E-value=3.8e-09 Score=78.25 Aligned_cols=111 Identities=20% Similarity=0.286 Sum_probs=62.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------------HHHHhcCCh-----hhHHHHHHhhcCC-
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------------RREIASNSE-----YGTTILNTIKEGK- 66 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------------~~~~~~~~~-----~~~~~~~~l~~~~- 66 (196)
-+++|.|++||||||+++.|+ |....+.|.+. ++.+....+ ....+.+++..+.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 105 (222)
T PRK10908 29 EMAFLTGHSGAGKSTLLKLIC---GIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLI 105 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHH
Confidence 588999999999999999999 65544433221 111111111 1112333332211
Q ss_pred --CCCHHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 67 --IVPSEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 67 --~~~~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
..........+.+.+....-..+ -...++.++.|++.+++++...|++ ++||+|+..
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l-lllDEPt~~ 167 (222)
T PRK10908 106 IAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAV-LLADEPTGN 167 (222)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCE-EEEeCCCCc
Confidence 11112112222333332211111 1344667799999999999999998 779999943
No 316
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.90 E-value=9e-10 Score=84.01 Aligned_cols=111 Identities=16% Similarity=0.173 Sum_probs=60.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh---CCceechhHH-------HHHHHhcCChh----hHHHHHHhhcCCCCCHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY---GLTHLSAGEL-------LRREIASNSEY----GTTILNTIKEGKIVPSEVTVS 75 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~---~~~~i~~~~~-------~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~ 75 (196)
-+++|.|++||||||++++|...+ |-..++..++ .++.+...++. ...+.+++.............
T Consensus 31 e~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~ 110 (275)
T cd03289 31 QRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWK 110 (275)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHhhhccCCCHHHHHH
Confidence 478999999999999999999443 1112221111 12222221111 124555553221222222222
Q ss_pred HHHHHHhcC------C-C-CcEEE---eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 76 LIQKEMESS------D-S-KKFLI---DGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 76 ~i~~~l~~~------~-~-~~~ii---d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.+ +.+... . . ...+. ..++.++.|++.+++++...|++ ++||+|+
T Consensus 111 ~l-~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i-lllDEpt 166 (275)
T cd03289 111 VA-EEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI-LLLDEPS 166 (275)
T ss_pred HH-HHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE-EEEECcc
Confidence 11 111110 0 0 11111 12667799999999999999999 7799998
No 317
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.90 E-value=4.8e-09 Score=82.00 Aligned_cols=162 Identities=20% Similarity=0.318 Sum_probs=82.0
Q ss_pred EEcCCCCChHHHHHHHHHHhCCceechhHHHH------------HHHhcCCh-----hhHHHHHHhhcCC---CCCHHHH
Q 029287 14 VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR------------REIASNSE-----YGTTILNTIKEGK---IVPSEVT 73 (196)
Q Consensus 14 i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~------------~~~~~~~~-----~~~~~~~~l~~~~---~~~~~~~ 73 (196)
|.|++||||||++++|+ |....+.|.+.. +.+....+ ...++.+++..+. .......
T Consensus 1 l~G~nGsGKSTLl~~ia---Gl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~ 77 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLA---GFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEI 77 (325)
T ss_pred CcCCCCCCHHHHHHHHH---CCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHH
Confidence 57999999999999999 765555443311 11111111 1122344433221 1122222
Q ss_pred HHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH---H
Q 029287 74 VSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK---R 147 (196)
Q Consensus 74 ~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~---~ 147 (196)
...+.+.+...+-..+ ....++.++.|++.+++++...|++ ++||+|+.-+....... .......+.+ .
T Consensus 78 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~l-llLDEP~s~LD~~~~~~----l~~~l~~l~~~~g~ 152 (325)
T TIGR01187 78 KPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKI-LLLDEPLSALDKKLRDQ----MQLELKTIQEQLGI 152 (325)
T ss_pred HHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCE-EEEeCCCccCCHHHHHH----HHHHHHHHHHhcCC
Confidence 2223333332221111 1344667799999999999999998 77999993332222111 0000001110 0
Q ss_pred HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287 148 LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ 183 (196)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~ 183 (196)
...+.+|....+..++++..++. |...++++++++.
T Consensus 153 tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 153 TFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred EEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 12456676666666666433332 3345677777653
No 318
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.90 E-value=6.7e-09 Score=78.68 Aligned_cols=32 Identities=22% Similarity=0.408 Sum_probs=27.5
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
...++.++.|++.+++++...|++ ++||+|+.
T Consensus 149 ~~~LS~Gq~qrl~laral~~~p~l-lllDEPt~ 180 (258)
T PRK11701 149 PTTFSGGMQQRLQIARNLVTHPRL-VFMDEPTG 180 (258)
T ss_pred CccCCHHHHHHHHHHHHHhcCCCE-EEEcCCcc
Confidence 345777899999999999999998 78999993
No 319
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.90 E-value=1.3e-09 Score=80.25 Aligned_cols=112 Identities=19% Similarity=0.280 Sum_probs=61.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH------------------HHHHhcCCh-----hhHHHHHHhhcCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL------------------RREIASNSE-----YGTTILNTIKEGK 66 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~------------------~~~~~~~~~-----~~~~~~~~l~~~~ 66 (196)
-+++|.|++||||||+++.|+ |....+.|.+. ++.+....+ ....+.+++....
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~ 100 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIA---GLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGL 100 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHH
Confidence 588999999999999999999 65443333221 111111010 0112333332111
Q ss_pred C-CCHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287 67 I-VPSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM 125 (196)
Q Consensus 67 ~-~~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~ 125 (196)
. .........+.+.+...+-. ..-...++.++.|++.+++++...|++ ++||+|+..+
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l-lllDEPt~~L 162 (214)
T cd03297 101 KRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPEL-LLLDEPFSAL 162 (214)
T ss_pred hhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCE-EEEcCCcccC
Confidence 0 01111112223333321111 112345777899999999999999999 7799999443
No 320
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.90 E-value=2.1e-09 Score=78.80 Aligned_cols=110 Identities=25% Similarity=0.305 Sum_probs=59.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH------------HHHHhcCChh-----hHHHHHHhhcCC---CCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL------------RREIASNSEY-----GTTILNTIKEGK---IVP 69 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~------------~~~~~~~~~~-----~~~~~~~l~~~~---~~~ 69 (196)
-+++|.|++||||||+++.|+ |....+.|.+. ++.+...++. ...+.+++.... ...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 103 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMKIIL---GLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIR 103 (208)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCCc
Confidence 478999999999999999999 65544433221 1111111110 112222221110 011
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 70 SEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 70 ~~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
.. ....+.+.+.......--...++.++.|++.++.++...|++ ++||+|+..
T Consensus 104 ~~-~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l-lllDEPt~~ 156 (208)
T cd03268 104 KK-RIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDL-LILDEPTNG 156 (208)
T ss_pred HH-HHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCE-EEECCCccc
Confidence 11 112222222211110111345777899999999999999998 789999944
No 321
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.89 E-value=4.9e-09 Score=89.88 Aligned_cols=110 Identities=21% Similarity=0.293 Sum_probs=67.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCC-CCH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKI-VPS 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~-~~~ 70 (196)
-.++|+|++||||||+++.|+ |....+.|.+ +++.+...++ ...++++++..+.+ ..+
T Consensus 484 ~~vaivG~sGsGKSTL~~ll~---g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~ 560 (694)
T TIGR01846 484 EFIGIVGPSGSGKSTLTKLLQ---RLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPF 560 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCH
Confidence 478999999999999999999 4443333322 2333332222 24457777776543 333
Q ss_pred HHHHHHH-----HHHHhc-C-CCCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 71 EVTVSLI-----QKEMES-S-DSKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 71 ~~~~~~i-----~~~l~~-~-~~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
+...+.+ .+.+.. . +.+..+-+ .++.++.|++.+++++..+|++ ++||+|+.
T Consensus 561 ~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~i-lilDEpts 622 (694)
T TIGR01846 561 EHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRI-LIFDEATS 622 (694)
T ss_pred HHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCE-EEEECCCc
Confidence 3332221 112221 1 12333322 3667799999999999999999 77999993
No 322
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.89 E-value=9.4e-10 Score=79.88 Aligned_cols=112 Identities=17% Similarity=0.236 Sum_probs=60.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH----------HhcCCh-----hhHHHHHHhhcCCCC-CHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE----------IASNSE-----YGTTILNTIKEGKIV-PSEVT 73 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~----------~~~~~~-----~~~~~~~~l~~~~~~-~~~~~ 73 (196)
-+++|.|++||||||++++|+ |....+.|.+.... .....+ ....+.+++...... .....
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~ 103 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIA---GIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAET 103 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHh---cCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhcccHHH
Confidence 488999999999999999999 76554444332110 000000 111222222211000 00111
Q ss_pred HHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287 74 VSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM 125 (196)
Q Consensus 74 ~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~ 125 (196)
...+.+.+.......--+..++.++.+++.+++++...|++ ++||+|+.-+
T Consensus 104 ~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~-lllDEP~~~L 154 (195)
T PRK13541 104 LYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDL-WLLDEVETNL 154 (195)
T ss_pred HHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCcccC
Confidence 11111221111111112445777899999999999999998 7799998544
No 323
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.89 E-value=4.8e-09 Score=80.37 Aligned_cols=109 Identities=21% Similarity=0.308 Sum_probs=63.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCChh------hHHHHHHhhcCC---
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSEY------GTTILNTIKEGK--- 66 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~~------~~~~~~~l~~~~--- 66 (196)
-+++|.|++||||||+++.|+ |+...+.|.+ .++.+....+. ..++.+.+..+.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~ 110 (279)
T PRK13650 34 EWLSIIGHNGSGKSTTVRLID---GLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK 110 (279)
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC
Confidence 478999999999999999999 6554444322 11112111111 123344443321
Q ss_pred CCCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 67 IVPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 67 ~~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
..........+.+.+...+-.. .....++.++.|++.+++++...|++ ++||+|+
T Consensus 111 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~l-LlLDEPt 168 (279)
T PRK13650 111 GIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKI-IILDEAT 168 (279)
T ss_pred CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE-EEEECCc
Confidence 1122222223333444322111 12345677799999999999999999 7799999
No 324
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.89 E-value=1e-08 Score=86.10 Aligned_cols=113 Identities=24% Similarity=0.296 Sum_probs=68.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh----CCceechhHH-------HHHHHhcCCh----hhHHHHHHhhcCC--CCCHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY----GLTHLSAGEL-------LRREIASNSE----YGTTILNTIKEGK--IVPSEV 72 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~----~~~~i~~~~~-------~~~~~~~~~~----~~~~~~~~l~~~~--~~~~~~ 72 (196)
-+++|+|++||||||+++.|...+ |-..++..++ +++.....++ ...++++++..+. ...++.
T Consensus 359 ~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~ 438 (571)
T TIGR02203 359 ETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAE 438 (571)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHH
Confidence 478999999999999999999554 2222221111 2222333222 2445788887654 244443
Q ss_pred HHHHHH-----HHHhc-CC-CCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 73 TVSLIQ-----KEMES-SD-SKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 73 ~~~~i~-----~~l~~-~~-~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
..+.+. +.+.. +. .+..+-+ .++.++.|++++++++..+|++ ++||+|+.
T Consensus 439 i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~i-llLDEpts 498 (571)
T TIGR02203 439 IERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPI-LILDEATS 498 (571)
T ss_pred HHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCE-EEEeCccc
Confidence 333222 22221 11 1333333 3677899999999999999998 77999993
No 325
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.89 E-value=4.1e-09 Score=79.09 Aligned_cols=31 Identities=13% Similarity=0.308 Sum_probs=27.1
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+..++.++.|++.+++++...|++ ++||+|+
T Consensus 141 ~~~LS~Ge~qrv~laral~~~p~~-lllDEPt 171 (242)
T TIGR03411 141 AGLLSHGQKQWLEIGMLLMQDPKL-LLLDEPV 171 (242)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCE-EEecCCc
Confidence 345777899999999999999998 8899999
No 326
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.89 E-value=3.7e-09 Score=79.97 Aligned_cols=110 Identities=22% Similarity=0.336 Sum_probs=62.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh-----hhHHHHHHhhcCCC---
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE-----YGTTILNTIKEGKI--- 67 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~-----~~~~~~~~l~~~~~--- 67 (196)
-+++|.|++||||||+++.|+ |....+.|.+. ++.+....+ ....+.+++..+..
T Consensus 28 e~~~i~G~nGsGKSTLl~~i~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 104 (256)
T TIGR03873 28 SLTGLLGPNGSGKSTLLRLLA---GALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHR 104 (256)
T ss_pred cEEEEECCCCCCHHHHHHHHc---CCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhh
Confidence 488999999999999999999 65444333211 111111111 11223444432110
Q ss_pred ----CCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 68 ----VPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 68 ----~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
.........+.+.+...+... .-+..++.++.+++.++.++...|++ ++||+|+.
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l-lllDEPt~ 166 (256)
T TIGR03873 105 SLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKL-LLLDEPTN 166 (256)
T ss_pred hhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCE-EEEcCccc
Confidence 011111122333333221111 12445777899999999999999998 77999993
No 327
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.89 E-value=5.4e-09 Score=76.21 Aligned_cols=112 Identities=16% Similarity=0.213 Sum_probs=61.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCC-----hhhHHHHHHhhcCCCC-CH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNS-----EYGTTILNTIKEGKIV-PS 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~-----~~~~~~~~~l~~~~~~-~~ 70 (196)
-+++|.|++||||||+++.|+ |....+.|.+. ++.+.... .....+.+++..+... ..
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~---G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~ 104 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIA---GLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPG 104 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcCcc
Confidence 488999999999999999999 66544444221 11111100 0112233333221100 01
Q ss_pred HHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287 71 EVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM 125 (196)
Q Consensus 71 ~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~ 125 (196)
......+.+.+........-+..++.++.+++.+++++...|++ +++|+|+..+
T Consensus 105 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~-lilDEP~~~L 158 (200)
T PRK13540 105 AVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKL-WLLDEPLVAL 158 (200)
T ss_pred hHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCE-EEEeCCCccc
Confidence 11112222222221111112345777899999999999999998 7799999554
No 328
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.89 E-value=5e-09 Score=87.59 Aligned_cols=108 Identities=19% Similarity=0.194 Sum_probs=63.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCChhhHHHHHHhhcCCCCCHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSEYGTTILNTIKEGKIVPSEVTVS 75 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 75 (196)
-+++|+|++||||||+++.|+ |....+.|.+ .++......+....+...++... ......+
T Consensus 369 ~~~aivG~sGsGKSTl~~ll~---g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~ 443 (555)
T TIGR01194 369 DIVFIVGENGCGKSTLAKLFC---GLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLD 443 (555)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHH
Confidence 588999999999999999999 4443333322 22333333332222222222211 1111222
Q ss_pred HHHHHHhcCCCCcEE---------EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 76 LIQKEMESSDSKKFL---------IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 76 ~i~~~l~~~~~~~~i---------id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
.+.+.++......++ ...++.++.|++++++++..+|++ ++||+|+.
T Consensus 444 ~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~i-lilDE~ts 499 (555)
T TIGR01194 444 NAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPI-LLFDEWAA 499 (555)
T ss_pred HHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCE-EEEeCCcc
Confidence 333444432222221 134667799999999999999999 77999983
No 329
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.89 E-value=7.2e-10 Score=93.19 Aligned_cols=109 Identities=22% Similarity=0.333 Sum_probs=68.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCC--CC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKI--VP 69 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~--~~ 69 (196)
-.++|+|++||||||+++.|+..+ ..+.|++ +++.+...++ ...++++++..+.. ..
T Consensus 370 ~~~aIvG~sGsGKSTLl~ll~gl~---~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~ 446 (582)
T PRK11176 370 KTVALVGRSGSGKSTIANLLTRFY---DIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYS 446 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc---CCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCC
Confidence 478999999999999999999544 3333322 2333333333 24457888876532 34
Q ss_pred HHHHHHHHHH-----HHhc-CCC-CcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 70 SEVTVSLIQK-----EMES-SDS-KKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 70 ~~~~~~~i~~-----~l~~-~~~-~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
++...+.+.. .+.. +.+ +..+-+ .++.++.|++.+++++...|++ ++||+|+
T Consensus 447 ~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~i-lilDEpt 508 (582)
T PRK11176 447 REQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPI-LILDEAT 508 (582)
T ss_pred HHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCE-EEEECcc
Confidence 4433332221 1221 111 222222 2667799999999999999999 7799999
No 330
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.89 E-value=4.8e-09 Score=77.44 Aligned_cols=112 Identities=20% Similarity=0.257 Sum_probs=62.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCCh-----hhHHHHHHhhcC---CCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNSE-----YGTTILNTIKEG---KIV 68 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~~-----~~~~~~~~l~~~---~~~ 68 (196)
-+++|.|++||||||+++.|+ |....+.|++. ++.+....+ ....+.+++... ...
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 108 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLA---GLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGL 108 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCC
Confidence 478999999999999999999 66544444321 111111111 011122222110 001
Q ss_pred CHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287 69 PSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM 125 (196)
Q Consensus 69 ~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~ 125 (196)
........+.+.++...-.. --...++.++.|++.+++++...|++ ++||+|+..+
T Consensus 109 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~i-lllDEPt~~L 167 (218)
T cd03266 109 KGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPV-LLLDEPTTGL 167 (218)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCE-EEEcCCCcCC
Confidence 11112222333333221111 12345777899999999999999998 7799999443
No 331
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.88 E-value=1.8e-09 Score=89.39 Aligned_cols=109 Identities=15% Similarity=0.170 Sum_probs=63.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH---------------HHHHhcCCh-----hhHHHHHHhhcCCC--
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL---------------RREIASNSE-----YGTTILNTIKEGKI-- 67 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~---------------~~~~~~~~~-----~~~~~~~~l~~~~~-- 67 (196)
-+++|.|++||||||++++|+ |....+.|.+. ++.+....+ ......+++..+..
T Consensus 32 e~~~liG~nGsGKSTLl~~i~---Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 108 (510)
T PRK09700 32 EIHALLGENGAGKSTLMKVLS---GIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLT 108 (510)
T ss_pred cEEEEECCCCCCHHHHHHHHc---CCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccc
Confidence 588999999999999999999 66544433321 111111111 11123444432110
Q ss_pred --------CCHHHHHHHHHHHHhc---CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 68 --------VPSEVTVSLIQKEMES---SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 68 --------~~~~~~~~~i~~~l~~---~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.........+.+.+.. .....--+..++.++.|++.++.++...|++ ++||+|+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~l-llLDEPt 173 (510)
T PRK09700 109 KKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKV-IIMDEPT 173 (510)
T ss_pred cccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCC
Confidence 0111122223333332 2111222456778899999999999999998 7899999
No 332
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.88 E-value=6.2e-09 Score=76.99 Aligned_cols=110 Identities=22% Similarity=0.234 Sum_probs=61.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCCh-----hhHHHHHHhhcC---CCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNSE-----YGTTILNTIKEG---KIV 68 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~~-----~~~~~~~~l~~~---~~~ 68 (196)
-+++|.|++||||||++++|+ |....+.|.+. ++......+ ......+.+... ...
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~---G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~ 103 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLT---TLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGV 103 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCC
Confidence 578999999999999999999 65444433221 111111111 011122222110 001
Q ss_pred CHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 69 PSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 69 ~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
........+.+.+...+-.. .-+..++.++.|++.++.++...|++ +++|+|+.
T Consensus 104 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~l-lllDEPt~ 160 (220)
T cd03265 104 PGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEV-LFLDEPTI 160 (220)
T ss_pred CHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCcc
Confidence 11111222333333222111 12345777899999999999999998 77999993
No 333
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.88 E-value=1.1e-08 Score=76.97 Aligned_cols=31 Identities=26% Similarity=0.594 Sum_probs=26.8
Q ss_pred eCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 92 DGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
..++.++.|++.+++++...|++ ++||+|+.
T Consensus 143 ~~LSgG~~qrv~laral~~~p~l-lllDEPt~ 173 (247)
T TIGR00972 143 LGLSGGQQQRLCIARALAVEPEV-LLLDEPTS 173 (247)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCE-EEEeCCcc
Confidence 44667799999999999999998 77999993
No 334
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.88 E-value=7.3e-09 Score=76.19 Aligned_cols=111 Identities=19% Similarity=0.275 Sum_probs=61.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH----------------HHHHhcCCh-----hhHHHHHHhhcCC--
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL----------------RREIASNSE-----YGTTILNTIKEGK-- 66 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~----------------~~~~~~~~~-----~~~~~~~~l~~~~-- 66 (196)
-+++|.|++||||||++++|+ |....+.|.+. ++.+....+ ....+.+++....
T Consensus 27 ~~~~l~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~ 103 (213)
T cd03262 27 EVVVIIGPSGSGKSTLLRCIN---LLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIK 103 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHH
Confidence 488999999999999999999 65544333221 111111111 0112333332110
Q ss_pred --CCCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 67 --IVPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 67 --~~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
..........+.+.+...+-.. --+..++.++.|++.+++++...|++ ++||+|+.-
T Consensus 104 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l-lllDEP~~~ 165 (213)
T cd03262 104 VKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKV-MLFDEPTSA 165 (213)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCE-EEEeCCccC
Confidence 1111112222333333211111 12345777899999999999999998 779999943
No 335
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.88 E-value=6.4e-10 Score=82.45 Aligned_cols=108 Identities=21% Similarity=0.286 Sum_probs=59.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH----------HHHhcCCh-----hhHHHHHHhhcC---CCCCHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR----------REIASNSE-----YGTTILNTIKEG---KIVPSE 71 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~----------~~~~~~~~-----~~~~~~~~l~~~---~~~~~~ 71 (196)
-+++|.|++||||||+++.|+ |....+.|.+.. +......+ ....+.+++... ......
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~ 103 (223)
T TIGR03740 27 SVYGLLGPNGAGKSTLLKMIT---GILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDS 103 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHHcCCCHH
Confidence 478999999999999999999 655444442210 00111100 011122222110 001111
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 72 VTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 72 ~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
....+.+.+........-...++.++.++..++.++...|++ ++||+|+
T Consensus 104 -~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~l-lllDEP~ 152 (223)
T TIGR03740 104 -RIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKL-LILDEPT 152 (223)
T ss_pred -HHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCE-EEECCCc
Confidence 112222222221111112345777899999999999999998 7799999
No 336
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.88 E-value=5.5e-09 Score=79.54 Aligned_cols=109 Identities=17% Similarity=0.233 Sum_probs=60.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCChh-------hHHHHHHhh----c
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSEY-------GTTILNTIK----E 64 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~~-------~~~~~~~l~----~ 64 (196)
-+++|.|++||||||+++.|+ |....+.|.+. ++.+...++. ...+.+.+. .
T Consensus 40 e~~~i~G~NGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~ 116 (267)
T PRK15112 40 QTLAIIGENGSGKSTLAKMLA---GMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRL 116 (267)
T ss_pred CEEEEEcCCCCCHHHHHHHHh---CCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHh
Confidence 478999999999999999999 65544433221 1111111110 011122221 1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCC----CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 65 GKIVPSEVTVSLIQKEMESSDS----KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 65 ~~~~~~~~~~~~i~~~l~~~~~----~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
..........+.+.+.+...+- ...-+..++.++.|++.++.++...|++ ++||+|+
T Consensus 117 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~l-llLDEPt 177 (267)
T PRK15112 117 NTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKV-IIADEAL 177 (267)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCE-EEEcCCc
Confidence 1111111122223333332221 1112455777899999999999999998 7799999
No 337
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.88 E-value=1.6e-09 Score=76.61 Aligned_cols=95 Identities=19% Similarity=0.301 Sum_probs=58.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF 89 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~ 89 (196)
-+++|.|++||||||+++.|+ |....+.|.+.... .... .++......+...+.+ .+...
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~~---~~~i-----~~~~q~~~~~~~tv~~----nl~~~----- 87 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALA---GLWPWGSGRIGMPE---GEDL-----LFLPQRPYLPLGTLRE----QLIYP----- 87 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCCCCCCceEEECC---CceE-----EEECCCCccccccHHH----Hhhcc-----
Confidence 478999999999999999999 77666666543211 0000 0000000011111111 11110
Q ss_pred EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287 90 LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM 125 (196)
Q Consensus 90 iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~ 125 (196)
....++.++.+++.+++++...|++ ++||+|+.-+
T Consensus 88 ~~~~LS~G~~~rv~laral~~~p~~-lllDEPt~~L 122 (166)
T cd03223 88 WDDVLSGGEQQRLAFARLLLHKPKF-VFLDEATSAL 122 (166)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCE-EEEECCcccc
Confidence 1355777899999999999999999 7799999443
No 338
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.87 E-value=2.9e-09 Score=79.34 Aligned_cols=109 Identities=23% Similarity=0.289 Sum_probs=60.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH---------------HHHHhcCCh-----hhHHHHHHhhcC---C
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL---------------RREIASNSE-----YGTTILNTIKEG---K 66 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~---------------~~~~~~~~~-----~~~~~~~~l~~~---~ 66 (196)
-+++|.|++||||||+++.|+ |....+.|.+. +.......+ ....+.+++... .
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 103 (232)
T cd03218 27 EIVGLLGPNGAGKTTTFYMIV---GLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR 103 (232)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhc
Confidence 478999999999999999999 66544443221 111111111 111233333211 0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 67 IVPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 67 ~~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
..........+.+.+....-.. --...++.++.|++.++.++...|++ ++||+|+
T Consensus 104 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l-lllDEPt 161 (232)
T cd03218 104 GLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKF-LLLDEPF 161 (232)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEecCCc
Confidence 0111111112222222211111 12345777899999999999999999 7799999
No 339
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.87 E-value=7.1e-09 Score=72.75 Aligned_cols=27 Identities=30% Similarity=0.697 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 96 RSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 96 ~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
.++.|+.++++++...|++ +++|+|+.
T Consensus 155 GGQQQR~aIARaLameP~v-mLFDEPTS 181 (256)
T COG4598 155 GGQQQRVAIARALAMEPEV-MLFDEPTS 181 (256)
T ss_pred chHHHHHHHHHHHhcCCce-EeecCCcc
Confidence 4689999999999999998 77999983
No 340
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.87 E-value=9e-09 Score=86.69 Aligned_cols=109 Identities=23% Similarity=0.368 Sum_probs=67.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCC-CCH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKI-VPS 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~-~~~ 70 (196)
-.++|+|++||||||+++.|...+ ..+.|.+ +++.+...++ +..++++++..+.+ ..+
T Consensus 362 ~~v~IvG~sGsGKSTLl~lL~gl~---~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d 438 (588)
T PRK13657 362 QTVAIVGPTGAGKSTLINLLQRVF---DPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATD 438 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc---CCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCH
Confidence 478999999999999999999444 3333222 2333333222 23457777776543 334
Q ss_pred HHHHHHH-----HHHHhcC-CC-CcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 71 EVTVSLI-----QKEMESS-DS-KKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 71 ~~~~~~i-----~~~l~~~-~~-~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+.....+ .+.+... .+ +..+.+ .++.++.|++.+++++..+|++ ++||+|+
T Consensus 439 ~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~i-liLDEpt 499 (588)
T PRK13657 439 EEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPI-LILDEAT 499 (588)
T ss_pred HHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE-EEEeCCc
Confidence 4333222 2222211 11 333333 3667899999999999999999 7799998
No 341
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.87 E-value=2.7e-09 Score=78.57 Aligned_cols=111 Identities=19% Similarity=0.228 Sum_probs=62.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH------------HHHhcCCh-----hhHHHHHHhhcC---CCCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR------------REIASNSE-----YGTTILNTIKEG---KIVP 69 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~------------~~~~~~~~-----~~~~~~~~l~~~---~~~~ 69 (196)
-+++|.|++||||||+++.|+ |....+.|.+.. +.+....+ ....+.+++... ....
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~ 101 (213)
T TIGR01277 25 EIVAIMGPSGAGKSTLLNLIA---GFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKL 101 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHh---cCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccCCc
Confidence 488999999999999999999 665444443211 11111111 112333333211 0000
Q ss_pred HHHHHHHHHHHHhcCCC---CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 70 SEVTVSLIQKEMESSDS---KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 70 ~~~~~~~i~~~l~~~~~---~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
.......+.+.+...+- .......++.++.|++.+++++...|++ ++||+|+..
T Consensus 102 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l-lllDEPt~~ 158 (213)
T TIGR01277 102 NAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPI-LLLDEPFSA 158 (213)
T ss_pred cHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCE-EEEcCCCcc
Confidence 11111222333332111 1122456778899999999999999998 779999944
No 342
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.87 E-value=1.4e-09 Score=80.95 Aligned_cols=109 Identities=17% Similarity=0.205 Sum_probs=61.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH---------HhcCCh-----hhHHHHHHhhcC-----CCCCH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE---------IASNSE-----YGTTILNTIKEG-----KIVPS 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~---------~~~~~~-----~~~~~~~~l~~~-----~~~~~ 70 (196)
-+++|+|++||||||++++|+ |....+.|.+.... .....+ ....+.+++... .....
T Consensus 12 e~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~ 88 (230)
T TIGR01184 12 EFISLIGHSGCGKSTLLNLIS---GLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSK 88 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcccCCCH
Confidence 488999999999999999999 66554444332110 000000 011222322211 01112
Q ss_pred HHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 71 EVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 71 ~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
......+.+.+...+-.. --+..++.++.|++.+++++...|++ ++||+|+
T Consensus 89 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l-llLDEPt 142 (230)
T TIGR01184 89 SERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKV-LLLDEPF 142 (230)
T ss_pred HHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCE-EEEcCCC
Confidence 221222233333211111 12345777899999999999999998 7799999
No 343
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.87 E-value=1.1e-09 Score=78.41 Aligned_cols=96 Identities=23% Similarity=0.286 Sum_probs=56.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHh---hcCCCCCHHHHHHHHHHHHhcCCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTI---KEGKIVPSEVTVSLIQKEMESSDS 86 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~i~~~l~~~~~ 86 (196)
-+++|.|++||||||+++.|+ |....+.|.+....... ......++..+ .....+....+.+ .
T Consensus 29 e~~~i~G~nGsGKStLl~~l~---G~~~~~~G~i~~~g~~~-~~~~~~~~~~i~~~~q~~~~~~~tv~~----~------ 94 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLT---GDLKPQQGEITLDGVPV-SDLEKALSSLISVLNQRPYLFDTTLRN----N------ 94 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHh---ccCCCCCCEEEECCEEH-HHHHHHHHhhEEEEccCCeeecccHHH----h------
Confidence 478999999999999999999 76655555432110000 00000111111 0000000000001 0
Q ss_pred CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 87 KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 87 ~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
+...++.++.|+..+++++...|++ ++||+|+.
T Consensus 95 ---i~~~LS~G~~qrv~laral~~~p~~-lllDEP~~ 127 (178)
T cd03247 95 ---LGRRFSGGERQRLALARILLQDAPI-VLLDEPTV 127 (178)
T ss_pred ---hcccCCHHHHHHHHHHHHHhcCCCE-EEEECCcc
Confidence 1455777899999999999999998 77999993
No 344
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.86 E-value=4e-09 Score=78.87 Aligned_cols=109 Identities=18% Similarity=0.313 Sum_probs=59.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH---------------HHHHHhcCCh-----hhHHHHHHhhcCCC-C
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL---------------LRREIASNSE-----YGTTILNTIKEGKI-V 68 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~---------------~~~~~~~~~~-----~~~~~~~~l~~~~~-~ 68 (196)
-+++|.|++||||||+++.|+ |....+.|.+ .++......+ ....+.+++..+.. .
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~---G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 108 (237)
T PRK11614 32 EIVTLIGANGAGKTTLLGTLC---GDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA 108 (237)
T ss_pred cEEEEECCCCCCHHHHHHHHc---CCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc
Confidence 478999999999999999999 6554443322 1111111111 11123333332111 0
Q ss_pred CHH---HHHHHHHHHHh-cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 69 PSE---VTVSLIQKEME-SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 69 ~~~---~~~~~i~~~l~-~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
... .....+.+.+. ......--...++.++.|++.+++++...|++ ++||+|+
T Consensus 109 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~i-lllDEPt 165 (237)
T PRK11614 109 ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRL-LLLDEPS 165 (237)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCE-EEEcCcc
Confidence 111 11111122221 11000112445777899999999999999998 7799999
No 345
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.86 E-value=5.6e-09 Score=87.19 Aligned_cols=106 Identities=23% Similarity=0.263 Sum_probs=60.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCChhhHHHHHHhhcCCCCCHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSEYGTTILNTIKEGKIVPSEVTVS 75 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 75 (196)
-.++|.|++||||||+++.|. |....+.|.+ +++.+...++....+...+...... ...+
T Consensus 350 ~~~aivG~sGsGKSTL~~ll~---g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~---~~~~ 423 (547)
T PRK10522 350 ELLFLIGGNGSGKSTLAMLLT---GLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKP---ANPA 423 (547)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccccCc---hHHH
Confidence 588999999999999999999 5443333322 2222222222222222222221111 1112
Q ss_pred HHHHHHhcCCCCcEE--E------eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 76 LIQKEMESSDSKKFL--I------DGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 76 ~i~~~l~~~~~~~~i--i------d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.+.+.++..+....+ - ..++.++.|++.+++++..+|++ ++||+|+
T Consensus 424 ~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~i-lilDE~t 477 (547)
T PRK10522 424 LVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDI-LLLDEWA 477 (547)
T ss_pred HHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCE-EEEECCC
Confidence 223333322111111 1 24677899999999999999999 7799998
No 346
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.86 E-value=3.5e-08 Score=68.16 Aligned_cols=38 Identities=29% Similarity=0.601 Sum_probs=30.1
Q ss_pred EeCCCC----CHHHHHHHHHHhCCCCcEEEEeecChHHHHHHH
Q 029287 91 IDGFPR----SEENRAAFERIMGAEPDIVLFFDCPEEEMVNRV 129 (196)
Q Consensus 91 id~~~~----~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl 129 (196)
.|+||. ++.|++++++++..+|++ +++|+|..-+.-.+
T Consensus 135 adr~plhlsggqqqrvaiaralmmkpqv-llfdeptaaldpei 176 (242)
T COG4161 135 ADRYPLHLSGGQQQRVAIARALMMEPQV-LLFDEPTAALDPEI 176 (242)
T ss_pred cccCceecccchhhhHHHHHHHhcCCcE-EeecCcccccCHHH
Confidence 677764 689999999999999998 88999985544333
No 347
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.86 E-value=3.5e-09 Score=87.69 Aligned_cols=31 Identities=16% Similarity=0.402 Sum_probs=28.3
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+..++.++.|++.++.++...|++ ++||+|+
T Consensus 401 ~~~LSgG~kqrl~la~al~~~p~l-LlLDEPt 431 (510)
T PRK15439 401 ARTLSGGNQQKVLIAKCLEASPQL-LIVDEPT 431 (510)
T ss_pred cccCCcHHHHHHHHHHHHhhCCCE-EEECCCC
Confidence 566888999999999999999998 8899999
No 348
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.86 E-value=4.5e-09 Score=77.74 Aligned_cols=110 Identities=22% Similarity=0.303 Sum_probs=60.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh----hhHHHHHHhhcCCCCCHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE----YGTTILNTIKEGKIVPSE 71 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~----~~~~~~~~l~~~~~~~~~ 71 (196)
-+++|.|++||||||+++.|+ |....+.|.+. ++.+....+ ....+.+.+.........
T Consensus 31 ~~~~i~G~nGsGKSTLl~~i~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~ 107 (220)
T cd03245 31 EKVAIIGRVGSGKSTLLKLLA---GLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADD 107 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHHhhcCCCCCCH
Confidence 488999999999999999999 65443333221 111111111 112444544332211111
Q ss_pred HHHHHHHHHH------hcCC--CCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 72 VTVSLIQKEM------ESSD--SKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 72 ~~~~~i~~~l------~~~~--~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
.....+.+.+ .... .... -+..++.++.|++.+++++...|++ ++||+|+.
T Consensus 108 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l-lllDEPt~ 169 (220)
T cd03245 108 ERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI-LLLDEPTS 169 (220)
T ss_pred HHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE-EEEeCccc
Confidence 1111111111 1100 0000 1245777899999999999999998 77999983
No 349
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.86 E-value=1.7e-09 Score=99.18 Aligned_cols=112 Identities=12% Similarity=0.082 Sum_probs=69.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh----CCceechhH-------HHHHHHhcCChh----hHHHHHHhhcCCCCCHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY----GLTHLSAGE-------LLRREIASNSEY----GTTILNTIKEGKIVPSEVTV 74 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~----~~~~i~~~~-------~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~ 74 (196)
-.++|+|++||||||+++.|.+-+ |-..++.-+ -+|+.+...++. ..++++++.......++.+.
T Consensus 1313 ekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~ 1392 (1522)
T TIGR00957 1313 EKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVW 1392 (1522)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHH
Confidence 488999999999999999999655 222232211 134444433332 23578887633344454443
Q ss_pred HHHHH-----HHhc-C-CCCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 75 SLIQK-----EMES-S-DSKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 75 ~~i~~-----~l~~-~-~~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+.+.. .+.. . +.+..|-+ .++.+++|++.+++++..+|.+ ++||+++
T Consensus 1393 ~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I-LiLDEaT 1449 (1522)
T TIGR00957 1393 WALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKI-LVLDEAT 1449 (1522)
T ss_pred HHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCE-EEEECCc
Confidence 33221 1111 1 12333333 3677899999999999999998 7799988
No 350
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.86 E-value=3.6e-09 Score=74.67 Aligned_cols=87 Identities=21% Similarity=0.308 Sum_probs=57.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF 89 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~ 89 (196)
-+++|.|++||||||+++.|+ |....+.|.+.... ..+..... .+... ..-++
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~---G~~~~~~G~v~~~g------------------~~~~~~~~----~~~~~--~~i~~ 79 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILS---GLYKPDSGEILVDG------------------KEVSFASP----RDARR--AGIAM 79 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCCeEEEECC------------------EECCcCCH----HHHHh--cCeEE
Confidence 478899999999999999999 87665555442211 00000000 00011 11223
Q ss_pred EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287 90 LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM 125 (196)
Q Consensus 90 iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~ 125 (196)
+..++.++.|++.+++++...|++ +++|+|+..+
T Consensus 80 -~~qLS~G~~qrl~laral~~~p~i-lllDEP~~~L 113 (163)
T cd03216 80 -VYQLSVGERQMVEIARALARNARL-LILDEPTAAL 113 (163)
T ss_pred -EEecCHHHHHHHHHHHHHhcCCCE-EEEECCCcCC
Confidence 334888999999999999999998 7799998443
No 351
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.86 E-value=9.2e-09 Score=78.40 Aligned_cols=109 Identities=17% Similarity=0.361 Sum_probs=60.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCChhh------HHHHHHhhcC---C
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSEYG------TTILNTIKEG---K 66 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~~~------~~~~~~l~~~---~ 66 (196)
-+++|.|++||||||++++|+ |....+.|.+. ++.+....+.. ..+.+.+..+ .
T Consensus 36 e~~~I~G~nGsGKSTLl~~i~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~ 112 (269)
T PRK13648 36 QWTSIVGHNGSGKSTIAKLMI---GIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH 112 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc
Confidence 488999999999999999999 65544433221 11111111111 1112222111 0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 67 IVPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 67 ~~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
..........+...+...+-.. .....++.++.+++.+++++...|++ ++||+|+
T Consensus 113 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l-llLDEPt 170 (269)
T PRK13648 113 AVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSV-IILDEAT 170 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCE-EEEeCCc
Confidence 1111111222333333221111 12345777899999999999999999 7799999
No 352
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.8e-08 Score=80.18 Aligned_cols=113 Identities=23% Similarity=0.338 Sum_probs=68.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh----CCceechhHH-------HHHHHhcCCh----hhHHHHHHhhcCCCC-CHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY----GLTHLSAGEL-------LRREIASNSE----YGTTILNTIKEGKIV-PSEVT 73 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~----~~~~i~~~~~-------~~~~~~~~~~----~~~~~~~~l~~~~~~-~~~~~ 73 (196)
-.|+|.|++||||||+++.|...| |-..++..++ .++.+...++ +..+++++++-..+. .++.+
T Consensus 365 EkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel 444 (573)
T COG4987 365 EKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEEL 444 (573)
T ss_pred CeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHH
Confidence 378999999999999999999655 1111111111 2333333333 344467777654433 33333
Q ss_pred HHHH-----HHHHhcC--CCCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 74 VSLI-----QKEMESS--DSKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 74 ~~~i-----~~~l~~~--~~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
...+ .+.+... +...|+-+ +++.++.+++++++.+..+..+ +.||+|++
T Consensus 445 ~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl-~lLDEPTe 503 (573)
T COG4987 445 WAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPL-WLLDEPTE 503 (573)
T ss_pred HHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCe-EEecCCcc
Confidence 2221 2222222 12445544 4788899999999998888887 77999993
No 353
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.86 E-value=5e-10 Score=80.15 Aligned_cols=102 Identities=24% Similarity=0.317 Sum_probs=55.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhc--CChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIAS--NSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSK 87 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~ 87 (196)
-+++|.|++||||||+++.|+ |....+.|++....... ..+.....+..+. .++... . ........
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~---~~~q~~---~---~~~~~t~~ 94 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIA---GLEEPDSGSILIDGEDLTDLEDELPPLRRRIG---MVFQDF---A---LFPHLTVL 94 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEEccccchhHHHHhhcEE---EEecCC---c---cCCCCCHH
Confidence 488999999999999999999 76555555443111000 0000001111000 000000 0 00000000
Q ss_pred cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 88 KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 88 ~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
..+...++.++.|++.++.++...|++ ++||+|+.-
T Consensus 95 ~~l~~~lS~G~~qr~~la~al~~~p~l-lilDEP~~~ 130 (178)
T cd03229 95 ENIALGLSGGQQQRVALARALAMDPDV-LLLDEPTSA 130 (178)
T ss_pred HheeecCCHHHHHHHHHHHHHHCCCCE-EEEeCCccc
Confidence 001111777899999999999999999 779999843
No 354
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.86 E-value=1.5e-08 Score=74.30 Aligned_cols=28 Identities=25% Similarity=0.591 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 94 FPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
++.++.+++.+++++...|.+ ++||+|.
T Consensus 172 LS~Ge~rrvLiaRALv~~P~L-LiLDEP~ 199 (257)
T COG1119 172 LSQGEQRRVLIARALVKDPEL-LILDEPA 199 (257)
T ss_pred cCHhHHHHHHHHHHHhcCCCE-EEecCcc
Confidence 555688999999999999999 7799998
No 355
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.86 E-value=1.1e-08 Score=86.54 Aligned_cols=31 Identities=16% Similarity=0.289 Sum_probs=26.9
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+..++.++.|++.++.++...|++ ++||+|+
T Consensus 166 ~~~LSgGq~QRv~iA~AL~~~P~l-LllDEPt 196 (623)
T PRK10261 166 PHQLSGGMRQRVMIAMALSCRPAV-LIADEPT 196 (623)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCE-EEEeCCC
Confidence 344666799999999999999998 8899999
No 356
>PHA03136 thymidine kinase; Provisional
Probab=98.86 E-value=3.7e-07 Score=71.46 Aligned_cols=45 Identities=11% Similarity=0.185 Sum_probs=31.6
Q ss_pred CCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhc
Q 029287 110 AEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKAL 154 (196)
Q Consensus 110 ~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~ 154 (196)
+.||.+|||+.+++++.+|+.+|.+..+.-+.+.++.....|..+
T Consensus 190 p~pD~IIyL~l~~e~~~~RI~kRgR~~E~I~~~YL~~L~~~Y~~~ 234 (378)
T PHA03136 190 PHGGNIVIMDLDECEHAERIIARGRPGEAIDVRFLCALHNIYICF 234 (378)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999994332222455655544455544
No 357
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.86 E-value=1.2e-08 Score=77.93 Aligned_cols=33 Identities=24% Similarity=0.507 Sum_probs=26.5
Q ss_pred EeCCCCCHHHHHHHHHHhC---------CCCcEEEEeecChHH
Q 029287 91 IDGFPRSEENRAAFERIMG---------AEPDIVLFFDCPEEE 124 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~---------~~p~~~i~ld~~~~~ 124 (196)
+..++.++.|++.++.++. ..|++ ++||+|+.-
T Consensus 143 ~~~LSgG~~qrv~laral~~~~~~~~~~~~p~l-llLDEPt~~ 184 (272)
T PRK13547 143 VTTLSGGELARVQFARVLAQLWPPHDAAQPPRY-LLLDEPTAA 184 (272)
T ss_pred cccCCHHHHHHHHHHHHHhccccccccCCCCCE-EEEcCcccc
Confidence 3446677999999999988 48998 779999933
No 358
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.86 E-value=8e-09 Score=77.09 Aligned_cols=111 Identities=18% Similarity=0.249 Sum_probs=61.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------------H-HHHhcCChh-----hHHHHHHhhcC-
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------------R-REIASNSEY-----GTTILNTIKEG- 65 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------------~-~~~~~~~~~-----~~~~~~~l~~~- 65 (196)
-+++|.|++||||||+++.|+ |....+.|.+. + +.+....+. ...+.+++...
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 112 (233)
T PRK11629 36 EMMAIVGSSGSGKSTLLHLLG---GLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPL 112 (233)
T ss_pred cEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHH
Confidence 478999999999999999999 65443333221 0 111111111 11233333211
Q ss_pred --CCCCHHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 66 --KIVPSEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 66 --~~~~~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
...........+.+.+...+-..+ ....++.++.|++.++.++...|++ ++||+|+.-
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~l-llLDEPt~~ 175 (233)
T PRK11629 113 LIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRL-VLADEPTGN 175 (233)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCCCC
Confidence 011111122223333332221111 2344667799999999999999998 779999943
No 359
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.86 E-value=2.9e-09 Score=79.57 Aligned_cols=109 Identities=14% Similarity=0.172 Sum_probs=60.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCCh-----hhHHHHHHhhcCC---CC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNSE-----YGTTILNTIKEGK---IV 68 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~~-----~~~~~~~~l~~~~---~~ 68 (196)
-+++|.|++||||||+++.|+ |....+.|.+. ++......+ ....+.+.+.... ..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~---G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~ 104 (236)
T TIGR03864 28 EFVALLGPNGAGKSTLFSLLT---RLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGL 104 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCC
Confidence 488999999999999999999 65444433221 011111110 1112233332111 11
Q ss_pred CHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 69 PSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 69 ~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
........+.+.+...+-.. --+..++.++.|++.++.++...|++ ++||+|+
T Consensus 105 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~l-lllDEP~ 160 (236)
T TIGR03864 105 SRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPAL-LLLDEPT 160 (236)
T ss_pred CHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCc
Confidence 11111222233333211111 12345777899999999999999999 7799999
No 360
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.86 E-value=7.7e-09 Score=71.97 Aligned_cols=110 Identities=25% Similarity=0.373 Sum_probs=61.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH--HHHhcCChhhH-H---------------------HHH----Hh
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR--REIASNSEYGT-T---------------------ILN----TI 62 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~--~~~~~~~~~~~-~---------------------~~~----~l 62 (196)
-++|+||+||||||+...|+ |+...+.|++.- +.+....+.+. . +.+ ..
T Consensus 38 ~vaiVG~SGSGKSTLl~vlA---GLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPle 114 (228)
T COG4181 38 TVAIVGPSGSGKSTLLAVLA---GLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLE 114 (228)
T ss_pred eEEEEcCCCCcHHhHHHHHh---cCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhh
Confidence 57899999999999999999 988888776521 11111111000 0 000 00
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCCCcEEEeCCC----CCHHHHHHHHHHhCCCCcEEEEeecChHHHHH
Q 029287 63 KEGKIVPSEVTVSLIQKEMESSDSKKFLIDGFP----RSEENRAAFERIMGAEPDIVLFFDCPEEEMVN 127 (196)
Q Consensus 63 ~~~~~~~~~~~~~~i~~~l~~~~~~~~iid~~~----~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~ 127 (196)
..|....+ ......+.+....... -+.-|| .+.+|++++++++...|++ +|-|+|+-.+.+
T Consensus 115 L~ge~~~~--~~~~A~~lL~~vGLg~-Rl~HyP~qLSGGEQQRVAiARAfa~~P~v-LfADEPTGNLD~ 179 (228)
T COG4181 115 LRGESSAD--SRAGAKALLEAVGLGK-RLTHYPAQLSGGEQQRVALARAFAGRPDV-LFADEPTGNLDR 179 (228)
T ss_pred hcCCcccc--HHHHHHHHHHHhCccc-ccccCccccCchHHHHHHHHHHhcCCCCE-EeccCCCCCcch
Confidence 01100000 0111222222211111 134455 4589999999999999999 889999865443
No 361
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.85 E-value=5.2e-09 Score=88.57 Aligned_cols=87 Identities=14% Similarity=0.276 Sum_probs=50.4
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH---HHHHHHhchHhHHHHHHhcCc
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK---RLQVFKALNLPVINYYARRGK 167 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 167 (196)
...++.++.|++.++.++...|++ +++|+|+.-+....... ..+-...+.+ ....+.+|+...+..+++...
T Consensus 461 ~~~LSgGqrQRv~iAraL~~~p~l-lllDEPts~LD~~~~~~----i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~ 535 (623)
T PRK10261 461 PHEFSGGQRQRICIARALALNPKV-IIADEAVSALDVSIRGQ----IINLLLDLQRDFGIAYLFISHDMAVVERISHRVA 535 (623)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCE-EEEeCCcccCCHHHHHH----HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 345667799999999999999999 77999992222111111 0000000111 012566777777777777543
Q ss_pred EEE---EeCCCCHhHHHH
Q 029287 168 LYT---INAVGTVDEIFE 182 (196)
Q Consensus 168 ~~~---I~~~~~~~~v~~ 182 (196)
++. |...++.++++.
T Consensus 536 vl~~G~iv~~g~~~~i~~ 553 (623)
T PRK10261 536 VMYLGQIVEIGPRRAVFE 553 (623)
T ss_pred EEECCEEEEecCHHHHhc
Confidence 332 334567777754
No 362
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.85 E-value=3.5e-09 Score=80.78 Aligned_cols=109 Identities=24% Similarity=0.378 Sum_probs=62.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCChh------hHHHHHHhhcCC---
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSEY------GTTILNTIKEGK--- 66 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~~------~~~~~~~l~~~~--- 66 (196)
-+++|.|++||||||+++.|+ |....+.|.+ +++.+....+. ..++.+++..+.
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~---Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~ 112 (271)
T PRK13632 36 EYVAILGHNGSGKSTISKILT---GLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK 112 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc
Confidence 488999999999999999999 6544333322 11111111111 123344433211
Q ss_pred CCCHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 67 IVPSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 67 ~~~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
..........+.+.+...+-. ..-...++.++.|++.+++++...|++ ++||+|+
T Consensus 113 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l-llLDEP~ 170 (271)
T PRK13632 113 KVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEI-IIFDEST 170 (271)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCE-EEEeCCc
Confidence 111222222233333322111 112455777899999999999999999 7799999
No 363
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.85 E-value=7.4e-10 Score=78.91 Aligned_cols=96 Identities=21% Similarity=0.279 Sum_probs=55.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhh---cC-CCCCHHHHHHHHHHHHhcCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIK---EG-KIVPSEVTVSLIQKEMESSD 85 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~---~~-~~~~~~~~~~~i~~~l~~~~ 85 (196)
-+++|.|++||||||+++.|+ |....+.|.+........ ......+..+. .. ...+...+.+.+.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~---G~~~~~~G~i~~~g~~~~-~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~------- 95 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIIL---GLLKPDSGEIKVLGKDIK-KEPEEVKRRIGYLPEEPSLYENLTVRENLK------- 95 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCCCCCCeEEEECCEEcc-cchHhhhccEEEEecCCccccCCcHHHHhh-------
Confidence 478999999999999999999 765555554321110000 00001111000 00 0000001111110
Q ss_pred CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287 86 SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM 125 (196)
Q Consensus 86 ~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~ 125 (196)
++.++.+++.+++++...|++ +++|+|+..+
T Consensus 96 --------LS~G~~qrv~laral~~~p~i-lllDEPt~~L 126 (173)
T cd03230 96 --------LSGGMKQRLALAQALLHDPEL-LILDEPTSGL 126 (173)
T ss_pred --------cCHHHHHHHHHHHHHHcCCCE-EEEeCCccCC
Confidence 777899999999999999999 7799999443
No 364
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.85 E-value=8.7e-09 Score=82.55 Aligned_cols=111 Identities=22% Similarity=0.338 Sum_probs=64.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh----CCceechhHHH-------HHHHhcCCh----hhHHHHHHhhc-CCCCCHHHHH
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNY----GLTHLSAGELL-------RREIASNSE----YGTTILNTIKE-GKIVPSEVTV 74 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~----~~~~i~~~~~~-------~~~~~~~~~----~~~~~~~~l~~-~~~~~~~~~~ 74 (196)
.++|+|||||||||+++.|.--+ |...+|.-++- -+.+.+.++ +.-++.+++.. +...+.+.+.
T Consensus 364 ~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIi 443 (580)
T COG4618 364 ALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVI 443 (580)
T ss_pred eEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHH
Confidence 67999999999999999999332 23333332321 112222222 12235566644 3233333221
Q ss_pred H-----HHHHHHh-cC-CCCcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 75 S-----LIQKEME-SS-DSKKFLIDG---FPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 75 ~-----~i~~~l~-~~-~~~~~iid~---~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+ .+.+.+. .. +++..|-++ ++.++.|+..+++++-..|.+ ++||+|.
T Consensus 444 eAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~l-vVLDEPN 500 (580)
T COG4618 444 EAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFL-VVLDEPN 500 (580)
T ss_pred HHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcE-EEecCCC
Confidence 1 1111111 11 234445443 666799999999999889999 6799997
No 365
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.85 E-value=3.6e-09 Score=81.02 Aligned_cols=109 Identities=23% Similarity=0.345 Sum_probs=63.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCChh------hHHHHHHhhcCC---
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSEY------GTTILNTIKEGK--- 66 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~~------~~~~~~~l~~~~--- 66 (196)
-+++|.|++||||||++++|+ |....+.|.+. ++.+....+. ..++.+++..+.
T Consensus 34 e~~~i~G~nGaGKSTLl~~i~---G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~ 110 (279)
T PRK13635 34 EWVAIVGHNGSGKSTLAKLLN---GLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI 110 (279)
T ss_pred CEEEEECCCCCcHHHHHHHHh---cCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC
Confidence 478999999999999999999 66544444321 1111111111 123444443221
Q ss_pred CCCHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 67 IVPSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 67 ~~~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
..+.......+.+.+...+-. ......++.++.+++.+++++...|++ ++||+|+
T Consensus 111 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~l-llLDEPt 168 (279)
T PRK13635 111 GVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDI-IILDEAT 168 (279)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE-EEEeCCc
Confidence 112222222333333322211 112455777899999999999999999 7799999
No 366
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.85 E-value=7e-09 Score=79.26 Aligned_cols=109 Identities=19% Similarity=0.279 Sum_probs=63.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH---------------HHHHHhcCCh------hhHHHHHHhhcCC--
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL---------------LRREIASNSE------YGTTILNTIKEGK-- 66 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~---------------~~~~~~~~~~------~~~~~~~~l~~~~-- 66 (196)
-+++|.|++||||||++++|+ |....+.|.+ .++.+....+ ....+.+++..+.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~ 105 (274)
T PRK13644 29 EYIGIIGKNGSGKSTLALHLN---GLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPEN 105 (274)
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHH
Confidence 488999999999999999999 6544433322 1111111111 1123444443221
Q ss_pred -CCCHHHHHHHHHHHHhcCCC---CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 67 -IVPSEVTVSLIQKEMESSDS---KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 67 -~~~~~~~~~~i~~~l~~~~~---~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
..........+.+.+...+- ....+..++.++.|++.++.++...|++ ++||+|+
T Consensus 106 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~l-llLDEPt 164 (274)
T PRK13644 106 LCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPEC-LIFDEVT 164 (274)
T ss_pred cCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCE-EEEeCCc
Confidence 11222222223333332221 1122456778899999999999999999 7799999
No 367
>PHA00729 NTP-binding motif containing protein
Probab=98.84 E-value=4.6e-08 Score=71.79 Aligned_cols=112 Identities=14% Similarity=0.166 Sum_probs=64.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCC--ceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcC-
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGL--THLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESS- 84 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~- 84 (196)
....|+|+|+||+||||+|..|++.++. ..+..++..... -.....++.......+.......
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~--------------~~~~~fid~~~Ll~~L~~a~~~~~ 81 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQY--------------VQNSYFFELPDALEKIQDAIDNDY 81 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhc--------------CCcEEEEEHHHHHHHHHHHHhcCC
Confidence 3457889999999999999999988651 111111111100 00111122233333333333221
Q ss_pred CCCcEEEeCCCCC----------HHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc
Q 029287 85 DSKKFLIDGFPRS----------EENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN 133 (196)
Q Consensus 85 ~~~~~iid~~~~~----------~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~ 133 (196)
.....|+|.+... +.....+..++...+++++++.++++.+..++.+|+
T Consensus 82 ~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg 140 (226)
T PHA00729 82 RIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREKG 140 (226)
T ss_pred CCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhCC
Confidence 1234578883211 111223445555578999999999999999999984
No 368
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.84 E-value=2.5e-09 Score=78.26 Aligned_cols=111 Identities=21% Similarity=0.295 Sum_probs=61.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH------------------HHHHhcCChh-----hHHHHHHhhcC-
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL------------------RREIASNSEY-----GTTILNTIKEG- 65 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~------------------~~~~~~~~~~-----~~~~~~~l~~~- 65 (196)
-+++|.|++||||||+++.|+ |....+.|.+. ++.+....+. ...+.+++..+
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~ 101 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIG---LLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGL 101 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHh---cCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHH
Confidence 478999999999999999999 65443333221 1111111110 11222222211
Q ss_pred --CCCCHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 66 --KIVPSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 66 --~~~~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
...........+.+.+...+-. .-.+..++.++.++..+++++...|++ ++||+|+..
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~l-lllDEPt~~ 164 (206)
T TIGR03608 102 KYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPL-ILADEPTGS 164 (206)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCE-EEEeCCcCC
Confidence 0111111222233333321111 112345777899999999999999999 779999954
No 369
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.84 E-value=2e-09 Score=74.39 Aligned_cols=75 Identities=21% Similarity=0.294 Sum_probs=55.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF 89 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~ 89 (196)
-+++|.|++||||||+++.|+ |....+.|.+.... . ....
T Consensus 27 e~~~i~G~nGsGKStLl~~l~---G~~~~~~G~i~~~~------------------~-------------------~~i~ 66 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIA---GELEPDEGIVTWGS------------------T-------------------VKIG 66 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHc---CCCCCCceEEEECC------------------e-------------------EEEE
Confidence 478999999999999999999 77655554432110 0 0122
Q ss_pred EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287 90 LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM 125 (196)
Q Consensus 90 iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~ 125 (196)
++..++.++.++..+++++...|++ +++|+|+..+
T Consensus 67 ~~~~lS~G~~~rv~laral~~~p~i-lllDEP~~~L 101 (144)
T cd03221 67 YFEQLSGGEKMRLALAKLLLENPNL-LLLDEPTNHL 101 (144)
T ss_pred EEccCCHHHHHHHHHHHHHhcCCCE-EEEeCCccCC
Confidence 2333888899999999999999998 7799999443
No 370
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.84 E-value=5.6e-09 Score=87.67 Aligned_cols=109 Identities=21% Similarity=0.371 Sum_probs=65.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCC-CCH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKI-VPS 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~-~~~ 70 (196)
-+++|.|++||||||+++.|...+ ..+.|.+ .++.+...++ +..++++++..+.+ ..+
T Consensus 367 ~~~aivG~sGsGKSTL~~ll~g~~---~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~ 443 (574)
T PRK11160 367 EKVALLGRTGCGKSTLLQLLTRAW---DPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASD 443 (574)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCH
Confidence 488999999999999999999544 3332221 2333332222 23346777766543 233
Q ss_pred HHHHHHHHH-----HHhcCC-CCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 71 EVTVSLIQK-----EMESSD-SKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 71 ~~~~~~i~~-----~l~~~~-~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+...+.+.. .+..++ .+..+-+ .++.++.|++.+++++..+|++ ++||+|+
T Consensus 444 ~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~i-lilDE~t 503 (574)
T PRK11160 444 EALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPL-LLLDEPT 503 (574)
T ss_pred HHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCE-EEEeCCc
Confidence 332222111 111111 1222222 2666799999999999999998 7799998
No 371
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.84 E-value=3.5e-09 Score=77.59 Aligned_cols=110 Identities=16% Similarity=0.136 Sum_probs=59.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------HHHHhcCCh-----hhHHHHHHhhcCC---CCCH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------RREIASNSE-----YGTTILNTIKEGK---IVPS 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------~~~~~~~~~-----~~~~~~~~l~~~~---~~~~ 70 (196)
-+++|+|++||||||+++.|+ |....+.|.+. ++......+ ......+.+.... ....
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~ 105 (207)
T PRK13539 29 EALVLTGPNGSGKTTLLRLIA---GLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEE 105 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcH
Confidence 488999999999999999999 65444433221 111111110 0111222221100 0111
Q ss_pred HHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 71 EVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 71 ~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
.. ...+.+.+........-...++.++.+++.++.++...|++ ++||+|+..
T Consensus 106 ~~-~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l-lllDEPt~~ 157 (207)
T PRK13539 106 LD-IAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPI-WILDEPTAA 157 (207)
T ss_pred HH-HHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCE-EEEeCCccc
Confidence 11 11122222211100111234677799999999999999999 779999944
No 372
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.84 E-value=2.6e-09 Score=77.75 Aligned_cols=34 Identities=15% Similarity=0.314 Sum_probs=28.3
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM 125 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~ 125 (196)
+..++.++.+++.+++++...|++ ++||+|+..+
T Consensus 125 ~~~LS~G~~qrv~la~al~~~p~l-lllDEPt~~L 158 (198)
T TIGR01189 125 AAQLSAGQQRRLALARLWLSRAPL-WILDEPTTAL 158 (198)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCE-EEEeCCCcCC
Confidence 345777899999999999999998 7799998543
No 373
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.84 E-value=1.4e-08 Score=77.37 Aligned_cols=31 Identities=19% Similarity=0.482 Sum_probs=27.0
Q ss_pred eCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 92 DGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
..++.++.|++.+++++...|++ ++||+|+.
T Consensus 153 ~~LS~G~~qrl~laral~~~p~l-llLDEPt~ 183 (269)
T PRK14259 153 YSLSGGQQQRLCIARTIAIEPEV-ILMDEPCS 183 (269)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCE-EEEcCCCc
Confidence 45777899999999999999998 77999993
No 374
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.84 E-value=1.3e-08 Score=77.46 Aligned_cols=33 Identities=18% Similarity=0.349 Sum_probs=27.8
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
...++.++.|++.+++++...|++ ++||+|+..
T Consensus 149 ~~~LS~Ge~qrl~laral~~~p~l-llLDEPt~~ 181 (268)
T PRK10419 149 PPQLSGGQLQRVCLARALAVEPKL-LILDEAVSN 181 (268)
T ss_pred CccCChHHHHHHHHHHHHhcCCCE-EEEeCCCcc
Confidence 344677899999999999999999 779999933
No 375
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.84 E-value=5.3e-09 Score=87.02 Aligned_cols=109 Identities=22% Similarity=0.267 Sum_probs=61.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH---HhcCCh-------hhHHHHHHhhc-CCCCCHHHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE---IASNSE-------YGTTILNTIKE-GKIVPSEVTVSLIQ 78 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~---~~~~~~-------~~~~~~~~l~~-~~~~~~~~~~~~i~ 78 (196)
-+++|.|++||||||++++|+ |....+.|.+.... +....+ ......+.+.. ............+.
T Consensus 346 e~~~l~G~NGsGKSTLl~~i~---G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l 422 (530)
T PRK15064 346 ERLAIIGENGVGKTTLLRTLV---GELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTL 422 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHH
Confidence 378999999999999999999 76554444432110 111000 01122333221 00011111122222
Q ss_pred HHHhcC-CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 79 KEMESS-DSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 79 ~~l~~~-~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+.+... .....-+..++.++.|++.++.++...|++ ++||+|+
T Consensus 423 ~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~l-llLDEPt 466 (530)
T PRK15064 423 GRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNV-LVMDEPT 466 (530)
T ss_pred HHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCE-EEEcCCC
Confidence 232221 111122556778899999999999999999 7899999
No 376
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.84 E-value=3.2e-09 Score=80.29 Aligned_cols=109 Identities=18% Similarity=0.238 Sum_probs=61.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH---------HhcCCh-----hhHHHHHHhhcC---CCCCHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE---------IASNSE-----YGTTILNTIKEG---KIVPSEV 72 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~---------~~~~~~-----~~~~~~~~l~~~---~~~~~~~ 72 (196)
-+++|+|++||||||++++|+ |....+.|.+.... .....+ ....+.+++..+ .......
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 104 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIA---GFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQ 104 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHH
Confidence 478999999999999999999 66544444332110 000000 011223333211 0111111
Q ss_pred HHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 73 TVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 73 ~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
....+.+.+...+-..+ -...++.++.|++.++.++...|++ ++||+|+
T Consensus 105 ~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~l-llLDEPt 156 (255)
T PRK11248 105 RLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQL-LLLDEPF 156 (255)
T ss_pred HHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCC
Confidence 12223333332211111 1345677899999999999999998 7799999
No 377
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.83 E-value=6.7e-09 Score=77.27 Aligned_cols=109 Identities=20% Similarity=0.245 Sum_probs=60.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCChh----hHHHHHHhhcCCCC-CH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSEY----GTTILNTIKEGKIV-PS 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~~----~~~~~~~l~~~~~~-~~ 70 (196)
-+++|.|++||||||++++|+ |....+.|.+. ++.+....+. ...+.+++...... ..
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~~~~~~~~~~~ 106 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLM---RFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATD 106 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHHHhccCCCCCH
Confidence 478999999999999999999 65444333221 1111111111 11344444332211 11
Q ss_pred HHHHHH-----HHHHHhcCC--CCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 71 EVTVSL-----IQKEMESSD--SKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 71 ~~~~~~-----i~~~l~~~~--~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
...... +...+.... .... -...++.++.+++.+++++...|++ ++||+|+
T Consensus 107 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l-lllDEP~ 167 (229)
T cd03254 107 EEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI-LILDEAT 167 (229)
T ss_pred HHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE-EEEeCcc
Confidence 111111 111111110 0000 1345777899999999999999999 7799999
No 378
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.83 E-value=5.6e-09 Score=78.74 Aligned_cols=31 Identities=19% Similarity=0.453 Sum_probs=27.1
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+..++.++.|++.+++++...|++ ++||+|+
T Consensus 144 ~~~LSgG~~qrv~laral~~~p~l-llLDEP~ 174 (250)
T PRK14247 144 AGKLSGGQQQRLCIARALAFQPEV-LLADEPT 174 (250)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCE-EEEcCCC
Confidence 345777899999999999999999 7799999
No 379
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.82 E-value=1.9e-09 Score=79.80 Aligned_cols=111 Identities=19% Similarity=0.204 Sum_probs=60.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh----hhHHHHHHhhcCCCCCHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE----YGTTILNTIKEGKIVPSE 71 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~----~~~~~~~~l~~~~~~~~~ 71 (196)
-+++|.|++||||||++++|+ |....+.|.+. ++.+....+ ....+.+++.........
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~ 107 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALF---RLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDE 107 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHH---cCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHHhCcCCCCCHH
Confidence 478999999999999999999 65444433221 111111111 011334444322112222
Q ss_pred HHHHHH-----HHHHhc-C-CCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 72 VTVSLI-----QKEMES-S-DSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 72 ~~~~~i-----~~~l~~-~-~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
.....+ .+.+.. . .... --...++.++.|++.+++++...|++ ++||+|+.-
T Consensus 108 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l-lllDEP~~~ 169 (221)
T cd03244 108 ELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI-LVLDEATAS 169 (221)
T ss_pred HHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE-EEEeCcccc
Confidence 111111 111110 0 0000 11345667799999999999999998 779999843
No 380
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.82 E-value=2.6e-08 Score=78.09 Aligned_cols=85 Identities=11% Similarity=0.195 Sum_probs=50.3
Q ss_pred CCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH---HHHHHHhchHhHHHHHHhcCcEE
Q 029287 93 GFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK---RLQVFKALNLPVINYYARRGKLY 169 (196)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 169 (196)
.++.++.|++.++.++...|++ +++|+|+.-+..-.... ..+-...+.+ ....+.+|+...+..++++..++
T Consensus 158 ~LSgG~~QRv~iArAL~~~P~l-lilDEPts~LD~~~~~~----i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm 232 (330)
T PRK15093 158 ELTEGECQKVMIAIALANQPRL-LIADEPTNAMEPTTQAQ----IFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVL 232 (330)
T ss_pred hCCHHHHHHHHHHHHHHCCCCE-EEEeCCCCcCCHHHHHH----HHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 3555799999999999999999 77999992221111110 0000011111 01256678888887778755444
Q ss_pred E---EeCCCCHhHHHH
Q 029287 170 T---INAVGTVDEIFE 182 (196)
Q Consensus 170 ~---I~~~~~~~~v~~ 182 (196)
. |...++.+++++
T Consensus 233 ~~G~ive~g~~~~i~~ 248 (330)
T PRK15093 233 YCGQTVETAPSKELVT 248 (330)
T ss_pred ECCEEEEECCHHHHHh
Confidence 2 445567777654
No 381
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.82 E-value=5.4e-09 Score=77.73 Aligned_cols=110 Identities=25% Similarity=0.308 Sum_probs=61.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------------H-HHHhcCCh-----hhHHHHHHhhcC-
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------------R-REIASNSE-----YGTTILNTIKEG- 65 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------------~-~~~~~~~~-----~~~~~~~~l~~~- 65 (196)
-+++|.|++||||||++++|+ |+...+.|.+. + +.+....+ ....+.+.+...
T Consensus 37 e~~~i~G~nGsGKSTLl~~i~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~ 113 (228)
T PRK10584 37 ETIALIGESGSGKSTLLAILA---GLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPA 113 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHH---cCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHH
Confidence 488999999999999999999 65443333221 0 11111110 011222222210
Q ss_pred --CCCCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 66 --KIVPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 66 --~~~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
.........+.+.+.+...+... .-...++.++.|++.++.++...|++ ++||+|+.
T Consensus 114 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~l-lllDEPt~ 175 (228)
T PRK10584 114 LLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDV-LFADEPTG 175 (228)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCCC
Confidence 01111122223333333222111 12345777899999999999999998 77999993
No 382
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.82 E-value=9.9e-09 Score=85.39 Aligned_cols=87 Identities=15% Similarity=0.305 Sum_probs=49.6
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH---HHHHHHhchHhHHHHHHhcCc
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK---RLQVFKALNLPVINYYARRGK 167 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 167 (196)
+..++.++.|++.++.++...|++ ++||+|+.-+...-... ..+-...+.+ ....+.+|+...+..+++...
T Consensus 423 ~~~LSgG~~qrv~la~al~~~p~l-lllDEPt~~LD~~~~~~----l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~ 497 (529)
T PRK15134 423 PAEFSGGQRQRIAIARALILKPSL-IILDEPTSSLDKTVQAQ----ILALLKSLQQKHQLAYLFISHDLHVVRALCHQVI 497 (529)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCE-EEeeCCccccCHHHHHH----HHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEE
Confidence 456777899999999999999999 77999993222221111 0000011111 012456677766666666433
Q ss_pred EEE---EeCCCCHhHHHH
Q 029287 168 LYT---INAVGTVDEIFE 182 (196)
Q Consensus 168 ~~~---I~~~~~~~~v~~ 182 (196)
++. |...++.+++++
T Consensus 498 ~l~~G~i~~~~~~~~~~~ 515 (529)
T PRK15134 498 VLRQGEVVEQGDCERVFA 515 (529)
T ss_pred EEECCEEEEEcCHHHHhc
Confidence 332 334456666653
No 383
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.82 E-value=1.4e-08 Score=76.95 Aligned_cols=31 Identities=23% Similarity=0.531 Sum_probs=26.8
Q ss_pred eCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 92 DGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
..++.++.|++.+++++...|++ ++||+|+.
T Consensus 153 ~~LSgG~~qrv~laral~~~p~l-lllDEPt~ 183 (258)
T PRK14268 153 LSLSGGQQQRLCIARTLAVKPKI-ILFDEPTS 183 (258)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCE-EEEeCCCc
Confidence 44667799999999999999998 78999993
No 384
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.82 E-value=9.7e-09 Score=72.27 Aligned_cols=108 Identities=20% Similarity=0.315 Sum_probs=65.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH--------------Hh-----cCC------hhhHHHHHHhhcC
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE--------------IA-----SNS------EYGTTILNTIKEG 65 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~--------------~~-----~~~------~~~~~~~~~l~~~ 65 (196)
.++|+|-+||||||++++|+ |+.....|++..+. ++ +++ ..|.-+-..++..
T Consensus 41 TlaiIG~NGSGKSTLakMla---Gmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~ 117 (267)
T COG4167 41 TLAIIGENGSGKSTLAKMLA---GMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLN 117 (267)
T ss_pred EEEEEccCCCcHhHHHHHHh---cccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhc
Confidence 67899999999999999999 88877766653111 00 111 1122222223322
Q ss_pred CCCCHHHHHHHHHHHHhcC----CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 66 KIVPSEVTVSLIQKEMESS----DSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 66 ~~~~~~~~~~~i~~~l~~~----~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.....+...+.+.+.+... +...+-..-+..+++|++++++++-..|.+ |..|.-.
T Consensus 118 T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~i-IIaDeAl 177 (267)
T COG4167 118 TDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKI-IIADEAL 177 (267)
T ss_pred ccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcE-EEehhhh
Confidence 3333444455566666532 222333444556799999999999889998 4455544
No 385
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=98.82 E-value=2.4e-07 Score=63.76 Aligned_cols=160 Identities=19% Similarity=0.238 Sum_probs=85.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCC---ceechhHHHHHHHhcCCh-h----hHHHHHHhhcCCCCCHHHH-------H
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGL---THLSAGELLRREIASNSE-Y----GTTILNTIKEGKIVPSEVT-------V 74 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~---~~i~~~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~-------~ 74 (196)
.+|.++|||||||-|+.......+.. .++.- .++.+.-..+.+ + ...+...-..|.+.-.... -
T Consensus 6 ~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvr-RvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Ygip 84 (192)
T COG3709 6 RLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVR-RVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYGIP 84 (192)
T ss_pred eEEEEECCCCCChHHHHHHHHHHhccCCceEEEE-EEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCccccCc
Confidence 57888999999999999999988731 12211 122221111111 0 1112111122211110000 1
Q ss_pred HHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCC-cEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHh
Q 029287 75 SLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEP-DIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKA 153 (196)
Q Consensus 75 ~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p-~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~ 153 (196)
..|...+. .+..+++.+.- -.+..+-...| -+++.+-++|+++.+|+.+| +|+ +.+.+..|+..-..
T Consensus 85 ~eId~wl~--~G~vvl~NgSR------a~Lp~arrry~~Llvv~ita~p~VLaqRL~~R--GRE--s~eeI~aRL~R~a~ 152 (192)
T COG3709 85 AEIDLWLA--AGDVVLVNGSR------AVLPQARRRYPQLLVVCITASPEVLAQRLAER--GRE--SREEILARLARAAR 152 (192)
T ss_pred hhHHHHHh--CCCEEEEeccH------hhhHHHHHhhhcceeEEEecCHHHHHHHHHHh--ccC--CHHHHHHHHHhhcc
Confidence 12333444 24555555432 11211111122 34588999999999999999 443 55665555432222
Q ss_pred chHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287 154 LNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFA 189 (196)
Q Consensus 154 ~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~ 189 (196)
. ......+..||+++..+..-+.+...+.
T Consensus 153 ~-------~~~~~dv~~idNsG~l~~ag~~ll~~l~ 181 (192)
T COG3709 153 Y-------TAGPGDVTTIDNSGELEDAGERLLALLH 181 (192)
T ss_pred c-------ccCCCCeEEEcCCCcHHHHHHHHHHHHH
Confidence 2 1236688899999999988777666654
No 386
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.82 E-value=1.7e-08 Score=75.06 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=28.2
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
...++.++.|++.+++++...|++ ++||+|+..
T Consensus 143 ~~~LS~G~~qrv~laral~~~p~l-llLDEPt~~ 175 (228)
T cd03257 143 PHELSGGQRQRVAIARALALNPKL-LIADEPTSA 175 (228)
T ss_pred chhcCHHHHHHHHHHHHHhcCCCE-EEecCCCCC
Confidence 345777899999999999999998 779999943
No 387
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.82 E-value=6.4e-09 Score=78.53 Aligned_cols=30 Identities=23% Similarity=0.520 Sum_probs=26.2
Q ss_pred eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 92 DGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
..++.++.|++.+++++...|++ ++||+|+
T Consensus 148 ~~LS~G~~qrv~laral~~~p~l-lllDEP~ 177 (253)
T PRK14267 148 SNLSGGQRQRLVIARALAMKPKI-LLMDEPT 177 (253)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCE-EEEcCCC
Confidence 44667799999999999999998 7799998
No 388
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.81 E-value=8.2e-09 Score=72.90 Aligned_cols=111 Identities=20% Similarity=0.275 Sum_probs=61.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCceechhHH-----------------HHHHHhcCChhhHH-----HHHHhhcCC--
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL-----------------LRREIASNSEYGTT-----ILNTIKEGK-- 66 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~-----------------~~~~~~~~~~~~~~-----~~~~l~~~~-- 66 (196)
++.|+|||||||||+.++|.... ..+.|.+ +|+.+....+.... ..++.....
T Consensus 30 f~fl~GpSGAGKSTllkLi~~~e---~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v 106 (223)
T COG2884 30 FVFLTGPSGAGKSTLLKLIYGEE---RPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRV 106 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHhhh---cCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhc
Confidence 45569999999999999998543 3332222 23333322221111 111111111
Q ss_pred -CCCHHHHHHHHHHHHhcCCC---CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287 67 -IVPSEVTVSLIQKEMESSDS---KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM 125 (196)
Q Consensus 67 -~~~~~~~~~~i~~~l~~~~~---~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~ 125 (196)
-.+.......+.+.++..+. ....=+.++.+++|++++++++-..|.+ ++-|+|+..+
T Consensus 107 ~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~v-LlADEPTGNL 168 (223)
T COG2884 107 IGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAV-LLADEPTGNL 168 (223)
T ss_pred cCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCe-EeecCCCCCC
Confidence 11223334444455553222 1222333556799999999999999999 7799998443
No 389
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.81 E-value=2.5e-08 Score=75.61 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=27.5
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
...++.++.|++.+++++...|++ ++||+|+.
T Consensus 154 ~~~LS~Gq~qrv~laral~~~p~l-llLDEPt~ 185 (260)
T PRK10744 154 GYSLSGGQQQRLCIARGIAIRPEV-LLLDEPCS 185 (260)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCE-EEEcCCCc
Confidence 345777899999999999999998 77999993
No 390
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.81 E-value=1e-08 Score=76.09 Aligned_cols=110 Identities=19% Similarity=0.244 Sum_probs=59.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCChh----hHHHHHHhhcC----CC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSEY----GTTILNTIKEG----KI 67 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~~----~~~~~~~l~~~----~~ 67 (196)
-+++|.|++||||||+++.|+ |....+.|.+. +..+....+. ...+.+++... ..
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~ 110 (225)
T PRK10247 34 EFKLITGPSGCGKSTLLKIVA---SLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQ 110 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHh---cccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHHHHhHHhhcCC
Confidence 478999999999999999999 65444433221 1111111110 11233333211 00
Q ss_pred CCHHHHHHHHHHHHhcCC-CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 68 VPSEVTVSLIQKEMESSD-SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 68 ~~~~~~~~~i~~~l~~~~-~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
.........+.+.+.... ....-+..++.++.+++.+++++...|++ ++||+|+.
T Consensus 111 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~l-lllDEPt~ 166 (225)
T PRK10247 111 QPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKV-LLLDEITS 166 (225)
T ss_pred ChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCE-EEEeCCcc
Confidence 001111112222222211 00111344667799999999999999999 77999993
No 391
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.81 E-value=5.8e-09 Score=87.18 Aligned_cols=109 Identities=21% Similarity=0.279 Sum_probs=62.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH---HhcCC------hhhHHHHHHhhcCCC---CC-HHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE---IASNS------EYGTTILNTIKEGKI---VP-SEVTVSL 76 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~---~~~~~------~~~~~~~~~l~~~~~---~~-~~~~~~~ 76 (196)
-+++|.|++||||||++++|+ |....+.|.+.... +.... .......+.+..+.. .. .......
T Consensus 349 e~~~l~G~NGsGKSTLl~~l~---G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 425 (552)
T TIGR03719 349 GIVGVIGPNGAGKSTLFRMIT---GQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRA 425 (552)
T ss_pred CEEEEECCCCCCHHHHHHHHc---CCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHH
Confidence 478999999999999999999 76554444432110 01001 111233444332211 11 1111122
Q ss_pred HHHHHhcCC-CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 77 IQKEMESSD-SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 77 i~~~l~~~~-~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+...+.... ....-+..++.++.+++.++.++...|++ ++||+|+
T Consensus 426 ~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~l-llLDEPt 471 (552)
T TIGR03719 426 YVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNV-LLLDEPT 471 (552)
T ss_pred HHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCE-EEEeCCC
Confidence 223332211 11122456778899999999999999999 7799999
No 392
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.81 E-value=2.3e-08 Score=84.06 Aligned_cols=110 Identities=18% Similarity=0.338 Sum_probs=65.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCC-CCH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKI-VPS 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~-~~~ 70 (196)
-.++|.|++||||||+++.|...+ ..+.|.+ +++.....++ ...++++++..+.+ ..+
T Consensus 367 e~i~IvG~sGsGKSTLlklL~gl~---~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~ 443 (576)
T TIGR02204 367 ETVALVGPSGAGKSTLFQLLLRFY---DPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATD 443 (576)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc---CCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCH
Confidence 478999999999999999999554 3322222 2222232222 23346777765543 233
Q ss_pred HHHHHHHH-----HHHhcC--CCCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 71 EVTVSLIQ-----KEMESS--DSKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 71 ~~~~~~i~-----~~l~~~--~~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
+.....+. +.+... +.+..+-+ .++.++.|++.+++++...|++ ++||+|+.
T Consensus 444 ~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~i-lilDEpts 505 (576)
T TIGR02204 444 EEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPI-LLLDEATS 505 (576)
T ss_pred HHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCe-EEEeCccc
Confidence 33322211 112211 11223322 2566799999999999999998 77999983
No 393
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.81 E-value=1.5e-08 Score=76.52 Aligned_cols=30 Identities=27% Similarity=0.608 Sum_probs=26.4
Q ss_pred eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 92 DGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
..++.++.|++.+++++...|++ ++||+|+
T Consensus 148 ~~LSgGq~qrv~laral~~~p~l-lllDEPt 177 (253)
T PRK14242 148 LGLSGGQQQRLCIARALAVEPEV-LLMDEPA 177 (253)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCE-EEEeCCc
Confidence 34667799999999999999998 7799999
No 394
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.81 E-value=1.2e-08 Score=77.00 Aligned_cols=32 Identities=31% Similarity=0.552 Sum_probs=27.2
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
...++.++.|++.+++++...|++ ++||+|+.
T Consensus 137 ~~~LS~G~~qrv~laral~~~p~i-lllDEPts 168 (255)
T cd03236 137 IDQLSGGELQRVAIAAALARDADF-YFFDEPSS 168 (255)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCE-EEEECCCC
Confidence 345777899999999999999998 77999993
No 395
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.80 E-value=9.6e-10 Score=80.38 Aligned_cols=111 Identities=21% Similarity=0.224 Sum_probs=64.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH-HhcCCh----hhHHHHHHhhcCCCCCHHHHHHH-----HHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE-IASNSE----YGTTILNTIKEGKIVPSEVTVSL-----IQK 79 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~-~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~-----i~~ 79 (196)
-+++|.|++||||||+++.|+ |....+.|.+.... +....+ ...++.+++.............. +.+
T Consensus 32 ~~~~i~G~nG~GKSTLl~~i~---G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~ 108 (204)
T cd03250 32 ELVAIVGPVGSGKSSLLSALL---GELEKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEP 108 (204)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CcCCCCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHH
Confidence 488999999999999999999 77666666543221 111000 11234455544322222211111 111
Q ss_pred HHhcCC-C-CcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 80 EMESSD-S-KKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 80 ~l~~~~-~-~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
.+.... + ... -...++.++.|++.+++++...|++ +++|+|+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~l-lllDEP~~~ 157 (204)
T cd03250 109 DLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADI-YLLDDPLSA 157 (204)
T ss_pred HHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCE-EEEeCcccc
Confidence 222111 1 111 1234667799999999999999999 779999844
No 396
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.80 E-value=1.9e-09 Score=77.39 Aligned_cols=100 Identities=19% Similarity=0.248 Sum_probs=57.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCC-hhhHHHHHHhh---cC----CCCCHHHHHHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNS-EYGTTILNTIK---EG----KIVPSEVTVSLIQKEM 81 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~l~---~~----~~~~~~~~~~~i~~~l 81 (196)
-+++|.|++||||||+++.|+ |....+.|.+......... ......+..+. .. ...+.....+.+
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l---- 99 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALF---GLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENI---- 99 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHH----
Confidence 478999999999999999999 7766665544321100000 00001111000 00 001101111111
Q ss_pred hcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 82 ESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 82 ~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
.... .++.++.+++.++.++...|++ ++||+|+..
T Consensus 100 ~~~~-------~LS~G~~qrl~la~al~~~p~l-lllDEP~~~ 134 (182)
T cd03215 100 ALSS-------LLSGGNQQKVVLARWLARDPRV-LILDEPTRG 134 (182)
T ss_pred HHHh-------hcCHHHHHHHHHHHHHccCCCE-EEECCCCcC
Confidence 1000 1788899999999999999998 779999944
No 397
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.80 E-value=1.3e-08 Score=84.63 Aligned_cols=31 Identities=29% Similarity=0.542 Sum_probs=27.2
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+..++.++.|++.++.++...|++ ++||+|+
T Consensus 425 ~~~LSgGq~qrv~laral~~~p~l-LllDEPt 455 (520)
T TIGR03269 425 PDELSEGERHRVALAQVLIKEPRI-VILDEPT 455 (520)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCc
Confidence 445777899999999999999998 7899999
No 398
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=98.80 E-value=3.4e-08 Score=70.18 Aligned_cols=120 Identities=17% Similarity=0.191 Sum_probs=69.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHh-CCceechhHHHHHH--HhcCC---------------hhhHHHHHHhhcCCCCC
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNY-GLTHLSAGELLRRE--IASNS---------------EYGTTILNTIKEGKIVP 69 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~-~~~~i~~~~~~~~~--~~~~~---------------~~~~~~~~~l~~~~~~~ 69 (196)
+..+|+|.|.+.|||||+|+.|.+.| |...|+.|+.+.-. ++... .....+.-.+......+
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~ 82 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAP 82 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccc
Confidence 45799999999999999999999999 67788888876322 11110 01222333333333332
Q ss_pred HH--HHH--HHHHHHHh---c--CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc
Q 029287 70 SE--VTV--SLIQKEME---S--SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN 133 (196)
Q Consensus 70 ~~--~~~--~~i~~~l~---~--~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~ 133 (196)
+. ... ..+.++.. . .....+++|||-.....- .....|..|++-.|.+++.+|...|-
T Consensus 83 ~ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p------~~~~~d~~im~~~~y~~~krRr~~Rt 149 (225)
T KOG3308|consen 83 EAREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKP------QVDLFDRIIMLTLDYETCKRRREART 149 (225)
T ss_pred hHhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecch------hhhhhhhheeeeccHHHHHHhhcccc
Confidence 21 111 11111111 1 123568899875321100 01135667899999999999999884
No 399
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.79 E-value=1.4e-08 Score=74.88 Aligned_cols=112 Identities=17% Similarity=0.186 Sum_probs=59.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH-----------HHHhcCCh-----hhHHHHHHhhcCC---CCCH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR-----------REIASNSE-----YGTTILNTIKEGK---IVPS 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~-----------~~~~~~~~-----~~~~~~~~l~~~~---~~~~ 70 (196)
-+++|.|++||||||+++.|+ |....+.|.+.. +......+ ....+.+++.... ....
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~---G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~ 114 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLA---GLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRA 114 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHh---CCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCcH
Confidence 478999999999999999999 654444333211 11111100 0112222221100 0111
Q ss_pred HHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287 71 EVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM 125 (196)
Q Consensus 71 ~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~ 125 (196)
......+.+.+........-+..++.++.+++.+++++...|++ ++||+|+..+
T Consensus 115 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l-lllDEPt~~L 168 (214)
T PRK13543 115 KQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPL-WLLDEPYANL 168 (214)
T ss_pred HHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCcccC
Confidence 11111122222221111112345777899999999999999998 7799999443
No 400
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.79 E-value=4e-09 Score=86.99 Aligned_cols=109 Identities=16% Similarity=0.267 Sum_probs=62.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH---------------HHHHhcCCh-----hhHHHHHHhhcCCC--
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL---------------RREIASNSE-----YGTTILNTIKEGKI-- 67 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~---------------~~~~~~~~~-----~~~~~~~~l~~~~~-- 67 (196)
-+++|.|++||||||++++|+ |....+.|.+. ++.+....+ ....+.+++..+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~ 101 (491)
T PRK10982 25 SIHALMGENGAGKSTLLKCLF---GIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPT 101 (491)
T ss_pred cEEEEECCCCCCHHHHHHHHc---CCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhcccccc
Confidence 478999999999999999999 65544433321 111111111 11123343332110
Q ss_pred ----CCHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 68 ----VPSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 68 ----~~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.........+.+.+....-. ..-+..++.++.|++.+++++...|++ ++||+|+
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~l-llLDEPt 162 (491)
T PRK10982 102 KGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKI-VIMDEPT 162 (491)
T ss_pred cccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCE-EEEeCCC
Confidence 11122222333333322111 112455777899999999999999998 8899999
No 401
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.79 E-value=2.5e-08 Score=75.34 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=27.1
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+..++.++.|++.+++++...|++ ++||+|+
T Consensus 146 ~~~LSgG~~qrv~laral~~~p~v-lllDEP~ 176 (253)
T TIGR02323 146 PRAFSGGMQQRLQIARNLVTRPRL-VFMDEPT 176 (253)
T ss_pred chhcCHHHHHHHHHHHHHhcCCCE-EEEcCCC
Confidence 445677899999999999999999 7799999
No 402
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.79 E-value=1.9e-09 Score=78.25 Aligned_cols=100 Identities=18% Similarity=0.312 Sum_probs=57.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCc--eechhHHHHHHHhcCChhhHHHHH---HhhcC-CCCCHHHHHHHHHHHHhc
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLT--HLSAGELLRREIASNSEYGTTILN---TIKEG-KIVPSEVTVSLIQKEMES 83 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~---~l~~~-~~~~~~~~~~~i~~~l~~ 83 (196)
-+++|.|++||||||+++.|+ |.. ..+.|.+........ . ...+. ++... ...+.....+.+.-...
T Consensus 36 e~~~l~G~nGsGKStLl~~i~---Gl~~~~~~~G~i~~~g~~~~-~--~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~- 108 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALA---GRRTGLGVSGEVLINGRPLD-K--RSFRKIIGYVPQDDILHPTLTVRETLMFAAK- 108 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCCCCCCCceEEEECCEeCc-h--HhhhheEEEccCcccCCCCCcHHHHHHHHHH-
Confidence 478999999999999999999 776 555554321110000 0 00110 01001 11111111111111000
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 84 SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 84 ~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
+..++.++.+++.+++++...|++ +++|+|+..
T Consensus 109 -------~~~LS~G~~qrv~laral~~~p~i-lllDEP~~~ 141 (194)
T cd03213 109 -------LRGLSGGERKRVSIALELVSNPSL-LFLDEPTSG 141 (194)
T ss_pred -------hccCCHHHHHHHHHHHHHHcCCCE-EEEeCCCcC
Confidence 116778899999999999999998 779999944
No 403
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.78 E-value=2.8e-08 Score=76.27 Aligned_cols=109 Identities=20% Similarity=0.326 Sum_probs=62.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceech---hHH--------------HHHHHhcCChh------hHHHHHHhhcC-
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSA---GEL--------------LRREIASNSEY------GTTILNTIKEG- 65 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~---~~~--------------~~~~~~~~~~~------~~~~~~~l~~~- 65 (196)
-+++|.|++||||||++++|+ |+...+. |.+ .++.+....+. ..++.+++..+
T Consensus 34 e~~~I~G~nGaGKSTLl~~l~---G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~ 110 (282)
T PRK13640 34 SWTALIGHNGSGKSTISKLIN---GLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGL 110 (282)
T ss_pred CEEEEECCCCCcHHHHHHHHh---cccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhH
Confidence 488999999999999999999 5543332 211 11111111111 11234444321
Q ss_pred --CCCCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 66 --KIVPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 66 --~~~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.........+.+.+.+...+... .-...++.++.|++.++.++...|++ ++||+|+
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~l-lllDEPt 171 (282)
T PRK13640 111 ENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKI-IILDEST 171 (282)
T ss_pred HhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE-EEEECCc
Confidence 11122222223333443322111 12445777899999999999999999 7799999
No 404
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.78 E-value=2.1e-08 Score=76.35 Aligned_cols=32 Identities=19% Similarity=0.442 Sum_probs=27.4
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
+..++.++.|++.+++++...|++ ++||+|+.
T Consensus 162 ~~~LSgGq~qrl~laral~~~p~l-llLDEPt~ 193 (268)
T PRK14248 162 ALSLSGGQQQRLCIARTLAMKPAV-LLLDEPAS 193 (268)
T ss_pred cccCCHHHHHHHHHHHHHhCCCCE-EEEcCCCc
Confidence 345777799999999999999998 77999993
No 405
>PRK13409 putative ATPase RIL; Provisional
Probab=98.78 E-value=4.5e-09 Score=88.13 Aligned_cols=109 Identities=19% Similarity=0.248 Sum_probs=62.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH-HHhcCC-----hhhHHHHHHhhcCC-CCCHHHHHHHHHHHHh
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR-EIASNS-----EYGTTILNTIKEGK-IVPSEVTVSLIQKEME 82 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~-~~~~~~-----~~~~~~~~~l~~~~-~~~~~~~~~~i~~~l~ 82 (196)
-+++|.|++||||||++++|+ |....+.|.+... .+...+ ....++.+++..+. ..........+.+.+.
T Consensus 366 eiv~l~G~NGsGKSTLlk~L~---Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~ 442 (590)
T PRK13409 366 EVIGIVGPNGIGKTTFAKLLA---GVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQ 442 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCC
Confidence 488999999999999999999 7655554443211 011011 11122333332211 0111111222222332
Q ss_pred cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 83 SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 83 ~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.......-+..++.++.|+++++.++...|++ ++||+|+
T Consensus 443 l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~l-lLLDEPt 481 (590)
T PRK13409 443 LERLLDKNVKDLSGGELQRVAIAACLSRDADL-YLLDEPS 481 (590)
T ss_pred CHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE-EEEeCCc
Confidence 22111122455778899999999999999999 7799999
No 406
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.78 E-value=2.4e-08 Score=83.86 Aligned_cols=109 Identities=19% Similarity=0.237 Sum_probs=65.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCC-CCH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKI-VPS 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~-~~~ 70 (196)
-.++|.|++||||||+++.|. |....+.|.+ +++.....++ ...++++++..+.. ..+
T Consensus 342 ~~~~ivG~sGsGKSTLl~ll~---g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~ 418 (569)
T PRK10789 342 QMLGICGPTGSGKSTLLSLIQ---RHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQ 418 (569)
T ss_pred CEEEEECCCCCCHHHHHHHHh---cccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCH
Confidence 578999999999999999999 4443333322 1222222221 12356777766533 333
Q ss_pred HHHHHHHHH-----HHh-cCCC-CcEEE---eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 71 EVTVSLIQK-----EME-SSDS-KKFLI---DGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 71 ~~~~~~i~~-----~l~-~~~~-~~~ii---d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+........ .+. ...+ +..+- ..++.++.|++.+++++..+|++ ++||+|+
T Consensus 419 ~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~i-lllDEpt 479 (569)
T PRK10789 419 QEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEI-LILDDAL 479 (569)
T ss_pred HHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCE-EEEECcc
Confidence 332222111 111 1111 22222 23666799999999999999999 7799998
No 407
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.78 E-value=2.3e-08 Score=74.59 Aligned_cols=109 Identities=22% Similarity=0.268 Sum_probs=60.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh----hhHHHHHHhhcCCCC-CH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE----YGTTILNTIKEGKIV-PS 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~----~~~~~~~~l~~~~~~-~~ 70 (196)
-+++|.|++||||||+++.|+ |....+.|.+. ++.+....+ ....+.+++...... ..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~ 105 (234)
T cd03251 29 ETVALVGPSGSGKSTLVNLIP---RFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATR 105 (234)
T ss_pred CEEEEECCCCCCHHHHHHHHh---ccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHHhhccCCCCCH
Confidence 478999999999999999999 65544444321 111111111 112344444332111 11
Q ss_pred HHHHH-----HHHHHHhcC--CCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 71 EVTVS-----LIQKEMESS--DSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 71 ~~~~~-----~i~~~l~~~--~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
..... .+.+.+... ..... -...++.++.|++.+++++...|++ ++||+|+
T Consensus 106 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l-llLDEP~ 166 (234)
T cd03251 106 EEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI-LILDEAT 166 (234)
T ss_pred HHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE-EEEeCcc
Confidence 11111 112222111 11111 1334667799999999999999998 7799999
No 408
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.78 E-value=1.4e-08 Score=84.51 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=28.1
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+..++.++.|++.++.++...|++ ++||+|+
T Consensus 153 ~~~LSgGq~qrv~lA~aL~~~p~l-LlLDEPt 183 (530)
T PRK15064 153 MSEVAPGWKLRVLLAQALFSNPDI-LLLDEPT 183 (530)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCE-EEEcCCC
Confidence 566888999999999999999998 8899999
No 409
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.78 E-value=3.2e-09 Score=77.49 Aligned_cols=109 Identities=18% Similarity=0.324 Sum_probs=59.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCce---echhHHHHHHHhcCChhhHHHHHHh---hc-CCCCCHHHHHHHHHHHHh
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTH---LSAGELLRREIASNSEYGTTILNTI---KE-GKIVPSEVTVSLIQKEME 82 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~l---~~-~~~~~~~~~~~~i~~~l~ 82 (196)
-+++|.|++||||||+++.|+ |... .+.|++........ ......+..+ .. ....+...+.+.+.-...
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~---G~~~~~~~~~G~i~i~g~~~~-~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 109 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALA---NRTEGNVSVEGDIHYNGIPYK-EFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALR 109 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhc---ccCCCCCCcceEEEECCEECc-cchhhhcceEEEEecccccCCCCcHHHHHhhhhh
Confidence 488999999999999999999 7654 44554321110000 0000111101 00 011111111222111111
Q ss_pred cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287 83 SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM 125 (196)
Q Consensus 83 ~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~ 125 (196)
.. ... -+..++.++.|++.++.++...|++ ++||+|+..+
T Consensus 110 ~~-~~~-~~~~LS~Ge~qrl~laral~~~p~l-lllDEPt~~L 149 (202)
T cd03233 110 CK-GNE-FVRGISGGERKRVSIAEALVSRASV-LCWDNSTRGL 149 (202)
T ss_pred hc-ccc-chhhCCHHHHHHHHHHHHHhhCCCE-EEEcCCCccC
Confidence 10 111 2455778899999999999999998 8899999543
No 410
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.77 E-value=4.7e-09 Score=86.75 Aligned_cols=31 Identities=16% Similarity=0.410 Sum_probs=28.0
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+..++.++.|++.++.++...|++ ++||+|+
T Consensus 394 ~~~LSgGq~qrl~la~al~~~p~l-llLDEPt 424 (501)
T PRK11288 394 IMNLSGGNQQKAILGRWLSEDMKV-ILLDEPT 424 (501)
T ss_pred cccCCHHHHHHHHHHHHHccCCCE-EEEcCCC
Confidence 556888899999999999999999 7899999
No 411
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.77 E-value=1.9e-08 Score=75.97 Aligned_cols=31 Identities=16% Similarity=0.472 Sum_probs=26.9
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
...++.++.|++.+++++...|++ ++||+|+
T Consensus 146 ~~~LS~G~~qrl~laral~~~p~l-lllDEP~ 176 (252)
T PRK14256 146 AMELSGGQQQRLCIARTIAVKPEV-ILMDEPA 176 (252)
T ss_pred cCcCCHHHHHHHHHHHHHhcCCCE-EEEcCCc
Confidence 445777899999999999999998 7799999
No 412
>PTZ00243 ABC transporter; Provisional
Probab=98.77 E-value=4.1e-09 Score=96.80 Aligned_cols=112 Identities=15% Similarity=0.239 Sum_probs=67.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh----CCceechhHH-------HHHHHhcCCh----hhHHHHHHhhcCCCCCHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY----GLTHLSAGEL-------LRREIASNSE----YGTTILNTIKEGKIVPSEVTV 74 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~----~~~~i~~~~~-------~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~ 74 (196)
-.|+|+|++||||||+++.|..-+ |-..++.-++ +|+.+...++ +..++++++.......++.+.
T Consensus 1337 ekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~ 1416 (1560)
T PTZ00243 1337 EKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVW 1416 (1560)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHH
Confidence 478999999999999999999554 2222222111 3444443333 233578888654444444333
Q ss_pred HHHHH-----HHhc-CC-CCcEEEe---CCCCCHHHHHHHHHHhCCC-CcEEEEeecCh
Q 029287 75 SLIQK-----EMES-SD-SKKFLID---GFPRSEENRAAFERIMGAE-PDIVLFFDCPE 122 (196)
Q Consensus 75 ~~i~~-----~l~~-~~-~~~~iid---~~~~~~~~~~~~~~~~~~~-p~~~i~ld~~~ 122 (196)
..+.. .+.. .. .+..+-+ .++.+++|++.+++++..+ |.+ ++||+++
T Consensus 1417 ~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~I-LlLDEAT 1474 (1560)
T PTZ00243 1417 AALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGF-ILMDEAT 1474 (1560)
T ss_pred HHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCE-EEEeCCC
Confidence 33222 1111 11 1222322 3677899999999999875 677 7899988
No 413
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.77 E-value=6.8e-09 Score=79.25 Aligned_cols=109 Identities=17% Similarity=0.294 Sum_probs=59.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------HH----HHhcCChh-------hHHHHHHhhcCC-----
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------RR----EIASNSEY-------GTTILNTIKEGK----- 66 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------~~----~~~~~~~~-------~~~~~~~l~~~~----- 66 (196)
-+++|.|++||||||++++|+ |....+.|.+. .. .+....+. ...+.+.+..+.
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~ 110 (272)
T PRK15056 34 SIAALVGVNGSGKSTLFKALM---GFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMG 110 (272)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheecccccccc
Confidence 478999999999999999999 66544433321 10 01111110 111233322110
Q ss_pred C--CCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 67 I--VPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 67 ~--~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
. .........+...+...+-.. --+..++.++.|++.+++++...|++ ++||+|+
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~l-lllDEPt 170 (272)
T PRK15056 111 WLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQV-ILLDEPF 170 (272)
T ss_pred cccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCE-EEEeCCC
Confidence 0 011111122223333211111 12345777899999999999999998 7799999
No 414
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.77 E-value=7e-09 Score=85.84 Aligned_cols=31 Identities=23% Similarity=0.463 Sum_probs=28.1
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+..++.++.|++.+++++...|++ ++||+|+
T Consensus 403 ~~~LSgG~kqrv~lA~al~~~p~l-llLDEPt 433 (506)
T PRK13549 403 IARLSGGNQQKAVLAKCLLLNPKI-LILDEPT 433 (506)
T ss_pred cccCCHHHHHHHHHHHHHhhCCCE-EEEcCCC
Confidence 566888899999999999999998 8899999
No 415
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=98.76 E-value=8.5e-07 Score=67.00 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLS 39 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~ 39 (196)
.+++|+|.|||||||.++.|-+. |+.-++
T Consensus 2 ~~vIiTGlSGaGKs~Al~~lED~-Gy~cvD 30 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRALEDL-GYYCVD 30 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHHHhc-CeeEEc
Confidence 57888999999999999988854 655544
No 416
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.76 E-value=1.8e-08 Score=73.86 Aligned_cols=103 Identities=15% Similarity=0.178 Sum_probs=59.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh----hhHHHHHHhhcCCCCCHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE----YGTTILNTIKEGKIVPSE 71 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~----~~~~~~~~l~~~~~~~~~ 71 (196)
-+++|.|++||||||+++.|+ |....+.|.+. ++.+....+ ....+.+++.........
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~ 111 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALF---RFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDE 111 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHh---cccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHhcccCCCCHH
Confidence 478999999999999999999 55433333221 111111111 011344444321111211
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 72 VTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 72 ~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
.+.+.+.. ... ...++.++.|++.+++++...|++ ++||+|+.-
T Consensus 112 ----~~~~~l~~---~~~-~~~LS~G~~qrv~laral~~~p~l-lllDEP~~~ 155 (207)
T cd03369 112 ----EIYGALRV---SEG-GLNLSQGQRQLLCLARALLKRPRV-LVLDEATAS 155 (207)
T ss_pred ----HHHHHhhc---cCC-CCcCCHHHHHHHHHHHHHhhCCCE-EEEeCCccc
Confidence 12222321 111 345677799999999999999999 779999843
No 417
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.76 E-value=2.6e-08 Score=75.33 Aligned_cols=109 Identities=19% Similarity=0.290 Sum_probs=61.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh-----hhHHHHHHhhcCCC---
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE-----YGTTILNTIKEGKI--- 67 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~-----~~~~~~~~l~~~~~--- 67 (196)
-+++|.|++||||||+++.|+ |....+.|.+ .++......+ ....+.+++..+..
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~ 105 (255)
T PRK11231 29 KITALIGPNGCGKSTLLKCFA---RLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWL 105 (255)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhh
Confidence 478999999999999999999 6544333321 1111111111 11223444432210
Q ss_pred ----CCHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 68 ----VPSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 68 ----~~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.........+...+...+-. ..-...++.++.|++.++.++...|++ ++||+|+
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l-lllDEP~ 166 (255)
T PRK11231 106 SLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPV-VLLDEPT 166 (255)
T ss_pred hhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCE-EEEcCCc
Confidence 00111122223333321111 112445777899999999999999999 7799999
No 418
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.76 E-value=2.7e-08 Score=75.02 Aligned_cols=32 Identities=19% Similarity=0.466 Sum_probs=27.2
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
...++.++.|++.++.++...|++ ++||+|+.
T Consensus 145 ~~~LS~G~~qrv~laral~~~p~l-lllDEP~~ 176 (251)
T PRK14270 145 ALKLSGGQQQRLCIARTIAVKPDV-ILMDEPTS 176 (251)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCE-EEEeCCcc
Confidence 345677799999999999999998 77999993
No 419
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.76 E-value=7.7e-09 Score=85.49 Aligned_cols=109 Identities=19% Similarity=0.259 Sum_probs=62.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH---------------HHHhcCCh-----hhHHHHHHhhcCCC--
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR---------------REIASNSE-----YGTTILNTIKEGKI-- 67 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~---------------~~~~~~~~-----~~~~~~~~l~~~~~-- 67 (196)
-+++|.|++||||||++++|+ |....+.|.+.. +.+....+ ......+++..+..
T Consensus 31 e~~~l~G~NGsGKSTLl~~l~---G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 107 (501)
T PRK10762 31 RVMALVGENGAGKSTMMKVLT---GIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFV 107 (501)
T ss_pred eEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccc
Confidence 588999999999999999999 665444443211 11111111 11123444432211
Q ss_pred -----CCHHHHHHHHHHHHhc---CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 68 -----VPSEVTVSLIQKEMES---SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 68 -----~~~~~~~~~i~~~l~~---~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.........+.+.+.. ......-+..++.++.|++.++.++...|++ ++||+|+
T Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l-llLDEPt 169 (501)
T PRK10762 108 NRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKV-IIMDEPT 169 (501)
T ss_pred cccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCc
Confidence 1111111223333332 2111122455777899999999999999999 8899999
No 420
>PLN03073 ABC transporter F family; Provisional
Probab=98.75 E-value=1.4e-08 Score=86.86 Aligned_cols=108 Identities=22% Similarity=0.265 Sum_probs=59.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH---HhcCCh-------hhHH-HHHHhhcCCCCCHHHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE---IASNSE-------YGTT-ILNTIKEGKIVPSEVTVSLIQ 78 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~---~~~~~~-------~~~~-~~~~l~~~~~~~~~~~~~~i~ 78 (196)
-+++|+|++||||||++++|+ |....+.|.+.... +....+ .... +.............. ...+.
T Consensus 536 e~i~LvG~NGsGKSTLLk~L~---Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~-i~~~L 611 (718)
T PLN03073 536 SRIAMVGPNGIGKSTILKLIS---GELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQK-LRAHL 611 (718)
T ss_pred CEEEEECCCCCcHHHHHHHHh---CCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHH-HHHHH
Confidence 378999999999999999999 76555544442110 000000 0000 000000000111111 12222
Q ss_pred HHHhcCC-CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 79 KEMESSD-SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 79 ~~l~~~~-~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
..+.... ....-+..++.++.|++.++.++...|++ ++||+|+
T Consensus 612 ~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~l-LLLDEPT 655 (718)
T PLN03073 612 GSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI-LLLDEPS 655 (718)
T ss_pred HHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCE-EEEcCCC
Confidence 2222211 01112455777899999999999999999 7899999
No 421
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.75 E-value=1.2e-08 Score=76.22 Aligned_cols=109 Identities=21% Similarity=0.268 Sum_probs=60.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCChh----hHHHHHHhhcCCC-CCH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSEY----GTTILNTIKEGKI-VPS 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~~----~~~~~~~l~~~~~-~~~ 70 (196)
-+++|.|++||||||+++.|+ |....+.|.+. ++.+....+. ...+.+++..... ...
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~ 105 (237)
T cd03252 29 EVVGIVGRSGSGKSTLTKLIQ---RFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSM 105 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHHhhccCCCCCH
Confidence 478999999999999999999 65544433221 1111111111 1234444433211 111
Q ss_pred HHHHHH-----HHHHHhcC--CCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 71 EVTVSL-----IQKEMESS--DSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 71 ~~~~~~-----i~~~l~~~--~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
...... +.+.+... ....+ -+..++.++.|++.+++++...|++ ++||+|+
T Consensus 106 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l-lllDEP~ 166 (237)
T cd03252 106 ERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI-LIFDEAT 166 (237)
T ss_pred HHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE-EEEeCCc
Confidence 111111 11111110 00111 1345667799999999999999998 7799999
No 422
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.75 E-value=3.3e-09 Score=76.81 Aligned_cols=99 Identities=19% Similarity=0.325 Sum_probs=55.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCce--echhHHHHHHHhcCChhhHHHHHHh---hc-CCCCCHHHHHHHHHHHHhc
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTH--LSAGELLRREIASNSEYGTTILNTI---KE-GKIVPSEVTVSLIQKEMES 83 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~l---~~-~~~~~~~~~~~~i~~~l~~ 83 (196)
-+++|+|++||||||+++.|+ |... .+.|++.... .+.....+..+ .. ....+...+.+.+.-...
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~---G~~~~~~~~G~i~~~g----~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~- 105 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLA---GRKTAGVITGEILING----RPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSAL- 105 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCCcCCCcceEEEECC----EehHHHhhhceEEecccCccccCCcHHHHHHHHHH-
Confidence 488999999999999999999 6431 2333322100 00000011101 00 011111111111111000
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 84 SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 84 ~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
+..++.++.+++.+++++...|++ +++|+|+..
T Consensus 106 -------~~~LSgGe~qrv~la~al~~~p~v-lllDEP~~~ 138 (192)
T cd03232 106 -------LRGLSVEQRKRLTIGVELAAKPSI-LFLDEPTSG 138 (192)
T ss_pred -------HhcCCHHHhHHHHHHHHHhcCCcE-EEEeCCCcC
Confidence 116888899999999999999998 779999844
No 423
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.75 E-value=8.5e-08 Score=71.93 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=28.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC-----CceechhHHHH
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYG-----LTHLSAGELLR 45 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~-----~~~i~~~~~~~ 45 (196)
+|+|+|+|||||||+++.|.+.++ ..+++.|.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 589999999999999999998874 34566666654
No 424
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.75 E-value=1.1e-08 Score=82.79 Aligned_cols=144 Identities=15% Similarity=0.239 Sum_probs=89.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcC--C-------------h-----hhHHHHHHhhcC----
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASN--S-------------E-----YGTTILNTIKEG---- 65 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~--~-------------~-----~~~~~~~~l~~~---- 65 (196)
-+.+|.|-+|+||||+.+.|+ |....+.|++..+..... + + ....+.+++.-|
T Consensus 35 EV~aL~GeNGAGKSTLmKiLs---Gv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~ 111 (500)
T COG1129 35 EVHALLGENGAGKSTLMKILS---GVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPT 111 (500)
T ss_pred eEEEEecCCCCCHHHHHHHHh---CcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccc
Confidence 478999999999999999999 888777776642210000 0 0 011123333222
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCC---CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH-----------HHHH
Q 029287 66 ---KIVPSEVTVSLIQKEMESSDS---KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE-----------MVNR 128 (196)
Q Consensus 66 ---~~~~~~~~~~~i~~~l~~~~~---~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~-----------~~~R 128 (196)
..++.........+.+..... ....+..++.++.|.+++++++...+.+ ++||+|+.. .++|
T Consensus 112 ~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arl-lIlDEPTaaLt~~E~~~Lf~~ir~ 190 (500)
T COG1129 112 RRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARV-LILDEPTAALTVKETERLFDLIRR 190 (500)
T ss_pred cCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCcccCCHHHHHHHHHHHHH
Confidence 223444444444444442211 2223556777899999999999888887 779999932 2233
Q ss_pred HhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEE
Q 029287 129 VLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYT 170 (196)
Q Consensus 129 l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (196)
++.+ .... .|.+|....+..+|++..|+.
T Consensus 191 Lk~~-------Gv~i------i~ISHrl~Ei~~i~DritVlR 219 (500)
T COG1129 191 LKAQ-------GVAI------IYISHRLDEVFEIADRITVLR 219 (500)
T ss_pred HHhC-------CCEE------EEEcCcHHHHHHhcCEEEEEe
Confidence 3322 1222 788898888888898766654
No 425
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.75 E-value=1.6e-08 Score=75.50 Aligned_cols=109 Identities=24% Similarity=0.319 Sum_probs=60.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh----hhHHHHHHhhcCCC-CCH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE----YGTTILNTIKEGKI-VPS 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~----~~~~~~~~l~~~~~-~~~ 70 (196)
-+++|.|++||||||+++.|+ |....+.|.+. ++......+ ...++.+++..+.. ...
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~---Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~ 104 (236)
T cd03253 28 KKVAIVGPSGSGKSTILRLLF---RFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATD 104 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHh---cccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHHHhhcCCCCCH
Confidence 488999999999999999999 66544444221 111111111 11234444433211 111
Q ss_pred HHHHH-----HHHHHHhcCC--CCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 71 EVTVS-----LIQKEMESSD--SKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 71 ~~~~~-----~i~~~l~~~~--~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
..... .+.+.+...+ .... -...++.++.+++.++.++...|++ ++||+|+
T Consensus 105 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l-lllDEP~ 165 (236)
T cd03253 105 EEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI-LLLDEAT 165 (236)
T ss_pred HHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE-EEEeCCc
Confidence 11111 0111111110 0110 0235677799999999999999999 7799999
No 426
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.75 E-value=3.6e-08 Score=72.94 Aligned_cols=111 Identities=21% Similarity=0.253 Sum_probs=62.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------------HHHHhcCChh-----hHHHHHHhhc---
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------------RREIASNSEY-----GTTILNTIKE--- 64 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------------~~~~~~~~~~-----~~~~~~~l~~--- 64 (196)
-+++|.|++||||||+++.|+ |....+.|.+. ++.+....+. ...+.+++..
T Consensus 32 ~~~~I~G~nGsGKStLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~ 108 (220)
T TIGR02982 32 EIVILTGPSGSGKTTLLTLIG---GLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALE 108 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHH
Confidence 488999999999999999999 65444333221 1111111111 0112222211
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 65 -GKIVPSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 65 -~~~~~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
............+.+.++..+.. ......++.++.|+..+++++...|++ +++|+|...
T Consensus 109 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~i-lllDEP~~~ 171 (220)
T TIGR02982 109 LQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKL-VLADEPTAA 171 (220)
T ss_pred hccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCCCc
Confidence 00112222222333333322211 112445777899999999999999998 779999943
No 427
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.75 E-value=3.9e-08 Score=74.30 Aligned_cols=31 Identities=19% Similarity=0.487 Sum_probs=27.0
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
...++.++.|++.+++++...|++ ++||+|+
T Consensus 148 ~~~LSgG~~qrv~laral~~~p~l-llLDEPt 178 (254)
T PRK14273 148 ALSLSGGQQQRLCIARTLAIEPNV-ILMDEPT 178 (254)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCE-EEEeCCC
Confidence 345777899999999999999998 7799999
No 428
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.75 E-value=1.7e-08 Score=78.99 Aligned_cols=82 Identities=16% Similarity=0.331 Sum_probs=47.8
Q ss_pred eCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHH----HHHhhccCCCCCCcHHHH-HHHHHHHHhchHhHHHHHHhcC
Q 029287 92 DGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMV----NRVLNRNEGRVDDNIDTV-RKRLQVFKALNLPVINYYARRG 166 (196)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~----~Rl~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 166 (196)
..++.++.|++.+++++...|++ ++||+|..-+. +.+.+. ...+ ++......+|....+..++++.
T Consensus 224 ~~LSgGqkqRl~LARAl~~~p~I-lLLDEPts~LD~~~~~~i~~~--------i~~l~~~~Tii~iTH~l~~i~~~~Dri 294 (329)
T PRK14257 224 NALSGGQQQRLCIARAIALEPEV-LLMDEPTSALDPIATAKIEEL--------ILELKKKYSIIIVTHSMAQAQRISDET 294 (329)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCE-EEEeCCcccCCHHHHHHHHHH--------HHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 34667799999999999999998 77999982221 111111 0000 0011134456555555556644
Q ss_pred cEEE---EeCCCCHhHHHH
Q 029287 167 KLYT---INAVGTVDEIFE 182 (196)
Q Consensus 167 ~~~~---I~~~~~~~~v~~ 182 (196)
.++. |...+++++++.
T Consensus 295 ivl~~G~i~e~g~~~~l~~ 313 (329)
T PRK14257 295 VFFYQGWIEEAGETKTIFI 313 (329)
T ss_pred EEEECCEEEEeCCHHHHhc
Confidence 3332 445678888764
No 429
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.75 E-value=3.9e-08 Score=82.32 Aligned_cols=109 Identities=20% Similarity=0.267 Sum_probs=61.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH---HhcCCh------hhHHHHHHhhcCCC---C-CHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE---IASNSE------YGTTILNTIKEGKI---V-PSEVTVSL 76 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~---~~~~~~------~~~~~~~~l~~~~~---~-~~~~~~~~ 76 (196)
-+++|.|++||||||++++|+ |....+.|.+.... +...++ ...+..+.+..+.. . ........
T Consensus 351 e~~~l~G~NGsGKSTLl~~i~---G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 427 (556)
T PRK11819 351 GIVGIIGPNGAGKSTLFKMIT---GQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRA 427 (556)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHH
Confidence 478999999999999999999 66544444332110 011111 11123333322110 1 11111122
Q ss_pred HHHHHhcCC-CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 77 IQKEMESSD-SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 77 i~~~l~~~~-~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+.+.+.... ....-+..++.++.|++.++.++...|++ ++||+|+
T Consensus 428 ~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~l-llLDEPt 473 (556)
T PRK11819 428 YVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNV-LLLDEPT 473 (556)
T ss_pred HHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCC
Confidence 223333211 11122556888899999999999999999 7799999
No 430
>COG4639 Predicted kinase [General function prediction only]
Probab=98.75 E-value=1.9e-07 Score=63.88 Aligned_cols=113 Identities=19% Similarity=0.219 Sum_probs=65.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCc
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKK 88 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~ 88 (196)
+.++++.|++||||||.++.... ....++.+++-. .++.. . + .+........-.+.....+.+.+. .++.
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~~--~~~~lsld~~r~-~lg~~-~-~---~e~sqk~~~~~~~~l~~~l~qrl~--~Gk~ 71 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENFL--QNYVLSLDDLRL-LLGVS-A-S---KENSQKNDELVWDILYKQLEQRLR--RGKF 71 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhCC--CcceecHHHHHH-Hhhhc-h-h---hhhccccHHHHHHHHHHHHHHHHH--cCCe
Confidence 45789999999999999886331 566777655532 21100 0 0 000000000011223334444444 4667
Q ss_pred EEEeCCCCCHHHH---HHHHHHhCCCCcEEEEeecChHHHHHHHhhc
Q 029287 89 FLIDGFPRSEENR---AAFERIMGAEPDIVLFFDCPEEEMVNRVLNR 132 (196)
Q Consensus 89 ~iid~~~~~~~~~---~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r 132 (196)
.|+|..-....++ ..++...+.. ..+|+||+|.+.|..|...|
T Consensus 72 tiidAtn~rr~~r~~l~~La~~y~~~-~~~ivfdtp~~~c~aRNk~~ 117 (168)
T COG4639 72 TIIDATNLRREDRRKLIDLAKAYGYK-IYAIVFDTPLELCLARNKLR 117 (168)
T ss_pred EEEEcccCCHHHHHHHHHHHHHhCCe-EEEEEEeCCHHHHHHHhhcc
Confidence 7899877654444 4455555544 44599999999999997644
No 431
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.74 E-value=6.8e-08 Score=73.89 Aligned_cols=31 Identities=16% Similarity=0.387 Sum_probs=26.9
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
...++.++.|++.+++++...|++ ++||+|+
T Consensus 161 ~~~LSgGq~qrl~LAral~~~p~l-llLDEPt 191 (276)
T PRK14271 161 PFRLSGGQQQLLCLARTLAVNPEV-LLLDEPT 191 (276)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCE-EEEcCCc
Confidence 345777899999999999999998 7799999
No 432
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.74 E-value=3.8e-08 Score=81.80 Aligned_cols=31 Identities=23% Similarity=0.424 Sum_probs=27.7
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+..++.++.|++.++.++...|++ ++||+|+
T Consensus 166 ~~~LSgGq~qrv~iA~al~~~p~l-llLDEPt 196 (520)
T TIGR03269 166 ARDLSGGEKQRVVLARQLAKEPFL-FLADEPT 196 (520)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCE-EEeeCCc
Confidence 455777899999999999999998 8899999
No 433
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.74 E-value=4.7e-08 Score=74.17 Aligned_cols=30 Identities=23% Similarity=0.513 Sum_probs=26.4
Q ss_pred eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 92 DGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
..++.++.|+..+++++...|++ ++||+|+
T Consensus 148 ~~LS~G~~qrv~laral~~~p~l-lllDEPt 177 (261)
T PRK14263 148 LSLSGGQQQRLCIARAIATEPEV-LLLDEPC 177 (261)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCE-EEEeCCC
Confidence 34677899999999999999999 7799999
No 434
>PRK13409 putative ATPase RIL; Provisional
Probab=98.74 E-value=2.3e-08 Score=83.87 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=27.6
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+..++.++.|++.++.++...|++ ++||+|+
T Consensus 210 ~~~LSgGe~qrv~ia~al~~~p~l-llLDEPt 240 (590)
T PRK13409 210 ISELSGGELQRVAIAAALLRDADF-YFFDEPT 240 (590)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCE-EEEECCC
Confidence 456777899999999999999998 8899999
No 435
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.74 E-value=7.1e-09 Score=77.53 Aligned_cols=110 Identities=21% Similarity=0.254 Sum_probs=60.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCC-h-----hhHHHHHHhhcC---CC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNS-E-----YGTTILNTIKEG---KI 67 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~-~-----~~~~~~~~l~~~---~~ 67 (196)
-+++|+|++||||||++++|+ |....+.|.+. ++.+.... + ......+++... ..
T Consensus 48 e~~~i~G~NGsGKSTLl~~i~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~ 124 (236)
T cd03267 48 EIVGFIGPNGAGKTTTLKILS---GLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYD 124 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcC
Confidence 588999999999999999999 65544433221 11111111 0 011122222110 01
Q ss_pred CCHHHHHHHHHHHHhc---CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 68 VPSEVTVSLIQKEMES---SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 68 ~~~~~~~~~i~~~l~~---~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
.........+...+.. ......-+..++.++.++..++.++...|++ ++||+|+.
T Consensus 125 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~l-lllDEPt~ 182 (236)
T cd03267 125 LPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEI-LFLDEPTI 182 (236)
T ss_pred CCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCCC
Confidence 1111112222222222 1111112455778899999999999999998 77999993
No 436
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.74 E-value=3.3e-08 Score=74.57 Aligned_cols=31 Identities=19% Similarity=0.547 Sum_probs=26.8
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
...++.++.|++.+++++...|++ ++||+|+
T Consensus 145 ~~~LS~Gq~qr~~laral~~~p~l-lllDEP~ 175 (251)
T PRK14251 145 AQAFSGGQQQRICIARALAVRPKV-VLLDEPT 175 (251)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCE-EEecCCC
Confidence 345667799999999999999998 7799999
No 437
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.74 E-value=2.2e-08 Score=76.79 Aligned_cols=109 Identities=20% Similarity=0.305 Sum_probs=61.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH---------------HHHHhcCChh------hHHHHHHhhcCC--
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL---------------RREIASNSEY------GTTILNTIKEGK-- 66 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~---------------~~~~~~~~~~------~~~~~~~l~~~~-- 66 (196)
-+++|.|++||||||++++|+ |....+.|.+. ++.+....+. ...+.+.+..+.
T Consensus 37 e~~~l~G~nGsGKSTLl~~l~---Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~ 113 (280)
T PRK13633 37 EFLVILGRNGSGKSTIAKHMN---ALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPEN 113 (280)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhh
Confidence 478999999999999999999 65444433221 1111111111 112233332211
Q ss_pred -CCCHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 67 -IVPSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 67 -~~~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
..........+.+.+...+-. .-....++.++.|++.++.++...|.+ ++||+|+
T Consensus 114 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~l-lllDEPt 172 (280)
T PRK13633 114 LGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPEC-IIFDEPT 172 (280)
T ss_pred cCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE-EEEeCCc
Confidence 112222222233333322211 112456777899999999999999998 7799999
No 438
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.74 E-value=2e-08 Score=75.17 Aligned_cols=109 Identities=24% Similarity=0.306 Sum_probs=59.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh----hhHHHHHHhhcCCCC-CH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE----YGTTILNTIKEGKIV-PS 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~----~~~~~~~~l~~~~~~-~~ 70 (196)
-+++|.|++||||||++++|+ |....+.|.+. ++.+....+ ....+.+++..+... ..
T Consensus 30 e~~~l~G~nGsGKSTLl~~i~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~ 106 (238)
T cd03249 30 KTVALVGSSGCGKSTVVSLLE---RFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATD 106 (238)
T ss_pred CEEEEEeCCCCCHHHHHHHHh---ccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHhhccCCCCCH
Confidence 588999999999999999999 65443333221 111111111 112344554432211 11
Q ss_pred HHHHH-----HHHHHHhcC--CCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 71 EVTVS-----LIQKEMESS--DSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 71 ~~~~~-----~i~~~l~~~--~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
..... .+.+.+... ..... -...++.++.+++.++.++...|++ ++||+|+
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l-lllDEP~ 167 (238)
T cd03249 107 EEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI-LLLDEAT 167 (238)
T ss_pred HHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE-EEEeCcc
Confidence 11111 011111111 01111 1234666789999999999999998 7799999
No 439
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.73 E-value=8.8e-08 Score=80.73 Aligned_cols=115 Identities=21% Similarity=0.282 Sum_probs=67.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH-----------HHHHHhcCChh-----hHHH------HHHhhcCCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL-----------LRREIASNSEY-----GTTI------LNTIKEGKI 67 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~-----------~~~~~~~~~~~-----~~~~------~~~l~~~~~ 67 (196)
-+.+|.||+||||||++.+|+-+..-.....|++ +++......+. ..+. ...++-+..
T Consensus 57 el~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~ 136 (613)
T KOG0061|consen 57 ELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS 136 (613)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC
Confidence 5889999999999999999995531100111222 11111111111 1112 333333333
Q ss_pred CCHHHH---HHHHHHHHhcCCCCcEEEe-----CCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287 68 VPSEVT---VSLIQKEMESSDSKKFLID-----GFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM 125 (196)
Q Consensus 68 ~~~~~~---~~~i~~~l~~~~~~~~iid-----~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~ 125 (196)
...... .+.+...+....+..-++. |.+.++..|+.++..+...|.+ +++|+|+.-+
T Consensus 137 ~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~i-LflDEPTSGL 201 (613)
T KOG0061|consen 137 LSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSI-LFLDEPTSGL 201 (613)
T ss_pred CCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCE-EEecCCCCCc
Confidence 333333 3444444444444433443 6888899999999999989998 8899999443
No 440
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.73 E-value=2.7e-08 Score=82.26 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=27.7
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+..++.++.|++.++.++...|++ ++||+|+
T Consensus 393 ~~~LSgGekqrv~lA~al~~~p~l-llLDEPt 423 (501)
T PRK10762 393 IGLLSGGNQQKVAIARGLMTRPKV-LILDEPT 423 (501)
T ss_pred hhhCCHHHHHHHHHHHHHhhCCCE-EEEcCCC
Confidence 556778899999999999999998 7899999
No 441
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.73 E-value=1.2e-07 Score=79.07 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=27.9
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+..++.++.|++.+++++...|++ ++||+|+
T Consensus 154 ~~~LSgGe~qrv~iAraL~~~p~l-lllDEPt 184 (529)
T PRK15134 154 PHQLSGGERQRVMIAMALLTRPEL-LIADEPT 184 (529)
T ss_pred CcccCHHHHHHHHHHHHHhcCCCE-EEEcCCC
Confidence 456778899999999999999998 8899999
No 442
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.73 E-value=1.7e-08 Score=93.90 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=63.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCChh-----hHHHHHHhhc---CCCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNSEY-----GTTILNTIKE---GKIV 68 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~~~-----~~~~~~~l~~---~~~~ 68 (196)
-+++|.|++||||||+.++|+ |....+.|++. ++.+...++. ..+.++.+.. -...
T Consensus 1966 Ei~gLLG~NGAGKTTLlkmL~---Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~ 2042 (2272)
T TIGR01257 1966 ECFGLLGVNGAGKTTTFKMLT---GDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGV 2042 (2272)
T ss_pred cEEEEECCCCCcHHHHHHHHh---CCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCC
Confidence 488999999999999999999 76655544432 1111111111 1112222211 0111
Q ss_pred CHHHHHHHHHHHHh---cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 69 PSEVTVSLIQKEME---SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 69 ~~~~~~~~i~~~l~---~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+.....+.+.+.++ .......-+..++.+++|++.++.++...|++ ++||+|.
T Consensus 2043 ~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~V-LLLDEPT 2098 (2272)
T TIGR01257 2043 PAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPL-VLLDEPT 2098 (2272)
T ss_pred CHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCE-EEEECCC
Confidence 22222222223333 22222223566888899999999999999999 8899999
No 443
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.73 E-value=5.8e-08 Score=71.99 Aligned_cols=34 Identities=26% Similarity=0.365 Sum_probs=28.6
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM 125 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~ 125 (196)
+..++.++.|++.+++++...|++ ++||+|+..+
T Consensus 147 ~~~LS~G~~qrl~laral~~~p~l-lllDEPt~~L 180 (224)
T TIGR02324 147 PATFSGGEQQRVNIARGFIADYPI-LLLDEPTASL 180 (224)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCE-EEEcCCcccC
Confidence 455777899999999999999998 7799998543
No 444
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.72 E-value=6.7e-08 Score=71.74 Aligned_cols=111 Identities=16% Similarity=0.237 Sum_probs=60.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh----hhHHHHHHhhcCCC-CCH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE----YGTTILNTIKEGKI-VPS 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~----~~~~~~~~l~~~~~-~~~ 70 (196)
-+++|.|++||||||++++|+ |....+.|.+. ++.+....+ ....+.+++..+.. ...
T Consensus 41 e~~~i~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~ 117 (226)
T cd03248 41 EVTALVGPSGSGKSTVVALLE---NFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSF 117 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHHhccccCCCCH
Confidence 478999999999999999999 65443333221 111111111 11234444432211 111
Q ss_pred HHHHH-----HHHHHHhcC--CCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 71 EVTVS-----LIQKEMESS--DSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 71 ~~~~~-----~i~~~l~~~--~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
..... .+.+.+... +.... -...++.++.+++.+++++...|++ ++||+|+.-
T Consensus 118 ~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~l-lllDEPt~~ 180 (226)
T cd03248 118 ECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQV-LILDEATSA 180 (226)
T ss_pred HHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE-EEEeCCccc
Confidence 11010 012222211 11111 1334666799999999999999999 779999943
No 445
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.72 E-value=7e-08 Score=72.77 Aligned_cols=31 Identities=19% Similarity=0.492 Sum_probs=26.8
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+..++.++.|++.++.++...|++ ++||+|+
T Consensus 144 ~~~LS~Gq~qr~~la~al~~~p~l-lllDEP~ 174 (250)
T PRK14262 144 GTRLSGGQQQRLCIARALAVEPEV-ILLDEPT 174 (250)
T ss_pred hhhcCHHHHHHHHHHHHHhCCCCE-EEEeCCc
Confidence 344667799999999999999998 7799999
No 446
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.72 E-value=1.1e-07 Score=71.61 Aligned_cols=32 Identities=22% Similarity=0.453 Sum_probs=27.6
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
...++.++.|++.+++++...|++ ++||+|+.
T Consensus 144 ~~~LS~G~~qrv~laral~~~p~l-llLDEPt~ 175 (250)
T PRK14245 144 AFALSGGQQQRLCIARAMAVSPSV-LLMDEPAS 175 (250)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCE-EEEeCCCc
Confidence 445777899999999999999998 77999993
No 447
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.72 E-value=1.5e-08 Score=76.69 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=25.6
Q ss_pred CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 93 GFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.++.++.|++.+++++...|++ ++||+|+
T Consensus 156 ~LS~G~~qrl~laral~~~p~l-lllDEPt 184 (257)
T cd03288 156 NFSVGQRQLFCLARAFVRKSSI-LIMDEAT 184 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCE-EEEeCCc
Confidence 4666789999999999999998 7799998
No 448
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.72 E-value=2.8e-08 Score=70.82 Aligned_cols=96 Identities=17% Similarity=0.160 Sum_probs=53.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCC-Cc
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDS-KK 88 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~-~~ 88 (196)
-+++|.||+||||||+++.+...-|-..+... . +.. .+..+ ..+. + .+ ..+.+..... ..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~-~---------~~~--~~~~~---~~~~-q--~~-~l~~~~L~~~~~~ 82 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISF-L---------PKF--SRNKL---IFID-Q--LQ-FLIDVGLGYLTLG 82 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCc-c---------ccc--ccccE---EEEh-H--HH-HHHHcCCCccccC
Confidence 58899999999999999988522122222110 0 000 00000 0011 1 11 1222222110 11
Q ss_pred EEEeCCCCCHHHHHHHHHHhCCC--CcEEEEeecChHHH
Q 029287 89 FLIDGFPRSEENRAAFERIMGAE--PDIVLFFDCPEEEM 125 (196)
Q Consensus 89 ~iid~~~~~~~~~~~~~~~~~~~--p~~~i~ld~~~~~~ 125 (196)
.-...++.++.++..+++++... |++ ++||+|...+
T Consensus 83 ~~~~~LSgGq~qrl~laral~~~~~p~l-lLlDEPt~~L 120 (176)
T cd03238 83 QKLSTLSGGELQRVKLASELFSEPPGTL-FILDEPSTGL 120 (176)
T ss_pred CCcCcCCHHHHHHHHHHHHHhhCCCCCE-EEEeCCcccC
Confidence 12345677799999999999888 998 7799998443
No 449
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.72 E-value=2.5e-08 Score=82.62 Aligned_cols=31 Identities=16% Similarity=0.471 Sum_probs=27.8
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+..++.++.|++.+++++...|++ ++||+|+
T Consensus 407 ~~~LSgGq~qrv~lAral~~~p~l-LlLDEPt 437 (510)
T PRK09700 407 ITELSGGNQQKVLISKWLCCCPEV-IIFDEPT 437 (510)
T ss_pred cccCChHHHHHHHHHHHHhcCCCE-EEECCCC
Confidence 556788899999999999999998 7899999
No 450
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.72 E-value=7.6e-09 Score=72.51 Aligned_cols=86 Identities=24% Similarity=0.369 Sum_probs=55.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF 89 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~ 89 (196)
-+++|+|++||||||+++.|+ |....+.|.+..... ..... .. ... . ....
T Consensus 26 ~~~~i~G~nGsGKStll~~l~---g~~~~~~G~i~~~~~------------------~~~~~-~~---~~~-~---~~i~ 76 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIA---GLLKPTSGEILIDGK------------------DIAKL-PL---EEL-R---RRIG 76 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCccEEEECCE------------------EcccC-CH---HHH-H---hceE
Confidence 578899999999999999999 765544443321110 00000 00 000 0 1122
Q ss_pred EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287 90 LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM 125 (196)
Q Consensus 90 iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~ 125 (196)
++..++.++.++..+..++...|++ +++|+|+..+
T Consensus 77 ~~~qlS~G~~~r~~l~~~l~~~~~i-~ilDEp~~~l 111 (157)
T cd00267 77 YVPQLSGGQRQRVALARALLLNPDL-LLLDEPTSGL 111 (157)
T ss_pred EEeeCCHHHHHHHHHHHHHhcCCCE-EEEeCCCcCC
Confidence 2334888899999999999999998 7799999443
No 451
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.71 E-value=4.8e-08 Score=73.61 Aligned_cols=108 Identities=19% Similarity=0.281 Sum_probs=58.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh-----hhHHHHHHhhcCCC--C
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE-----YGTTILNTIKEGKI--V 68 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~-----~~~~~~~~l~~~~~--~ 68 (196)
-+++|.|++||||||++++|+ |+.. ..|.+. ++......+ ......+++..... .
T Consensus 23 ei~~l~G~nGsGKSTLl~~l~---Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~ 98 (248)
T PRK03695 23 EILHLVGPNGAGKSTLLARMA---GLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDKT 98 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHc---CCCC-CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCccCC
Confidence 488999999999999999999 6542 122211 111111111 11223343332211 1
Q ss_pred CHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCC-------CCcEEEEeecCh
Q 029287 69 PSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGA-------EPDIVLFFDCPE 122 (196)
Q Consensus 69 ~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~-------~p~~~i~ld~~~ 122 (196)
........+.+.+...+.. .-.+..++.++.|++.++.++.. .|++ ++||+|+
T Consensus 99 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~l-lllDEPt 161 (248)
T PRK03695 99 RTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQL-LLLDEPM 161 (248)
T ss_pred CcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCE-EEEcCCc
Confidence 1111112223333321111 11245577789999999999875 5687 8899999
No 452
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.71 E-value=4.9e-08 Score=74.62 Aligned_cols=31 Identities=23% Similarity=0.470 Sum_probs=26.9
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
...++.++.|++.+++++...|++ ++||+|+
T Consensus 159 ~~~LSgGq~qrv~LAraL~~~p~l-llLDEPt 189 (274)
T PRK14265 159 GTALSGGQQQRLCIARAIAMKPDV-LLMDEPC 189 (274)
T ss_pred cccCCHHHHHHHHHHHHHhhCCCE-EEEeCCc
Confidence 344677899999999999999999 7799999
No 453
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.71 E-value=1.5e-08 Score=83.82 Aligned_cols=109 Identities=18% Similarity=0.240 Sum_probs=63.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcee--chhHHH---------------HHHHhcCCh-----hhHHHHHHhhcCCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHL--SAGELL---------------RREIASNSE-----YGTTILNTIKEGKI 67 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i--~~~~~~---------------~~~~~~~~~-----~~~~~~~~l~~~~~ 67 (196)
-+++|.|++||||||++++|+ |.... +.|.+. ++.+....+ ...+..+++..+..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~---Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 108 (506)
T PRK13549 32 EIVSLCGENGAGKSTLMKVLS---GVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNE 108 (506)
T ss_pred eEEEEECCCCCCHHHHHHHHh---CCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhccc
Confidence 478999999999999999999 65442 333321 111111111 11223444432211
Q ss_pred ------CCHHHHHHHHHHHHhcCC---CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 68 ------VPSEVTVSLIQKEMESSD---SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 68 ------~~~~~~~~~i~~~l~~~~---~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.........+.+.+.... ....-+..++.++.|++.++.++...|++ ++||+|+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l-llLDEPt 171 (506)
T PRK13549 109 ITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARL-LILDEPT 171 (506)
T ss_pred ccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCC
Confidence 111222223333333222 11222456778899999999999999998 8899999
No 454
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.71 E-value=2.7e-08 Score=91.35 Aligned_cols=112 Identities=17% Similarity=0.243 Sum_probs=67.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh---CCceechhHH-------HHHHHhcCCh----hhHHHHHHhhcCCCCCHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY---GLTHLSAGEL-------LRREIASNSE----YGTTILNTIKEGKIVPSEVTVS 75 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~---~~~~i~~~~~-------~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~ 75 (196)
-.|+|+|++||||||+++.|..-+ |-..++.-++ +|+.+...++ +..++++++.......++.+..
T Consensus 1246 ekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~ 1325 (1490)
T TIGR01271 1246 QRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWK 1325 (1490)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHH
Confidence 478999999999999999999655 2222221111 3333333322 2335777775444344444433
Q ss_pred HHHHH-----Hhc-C-CCCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 76 LIQKE-----MES-S-DSKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 76 ~i~~~-----l~~-~-~~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.+... +.. . +.+..|-+ .++.++.|++.+++++..+|.+ ++||+++
T Consensus 1326 aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~I-LlLDEaT 1381 (1490)
T TIGR01271 1326 VAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKI-LLLDEPS 1381 (1490)
T ss_pred HHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCE-EEEeCCc
Confidence 32221 111 1 11333333 3777899999999999999998 7799998
No 455
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.70 E-value=6.1e-08 Score=71.61 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=28.0
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
...++.++.|++.+++++...|++ ++||+|+..
T Consensus 138 ~~~LS~G~~qrv~laral~~~p~i-lllDEPt~~ 170 (218)
T cd03290 138 GINLSGGQRQRICVARALYQNTNI-VFLDDPFSA 170 (218)
T ss_pred CCcCCHHHHHHHHHHHHHhhCCCE-EEEeCCccc
Confidence 345777899999999999999998 779999944
No 456
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.70 E-value=6.9e-08 Score=73.19 Aligned_cols=31 Identities=23% Similarity=0.511 Sum_probs=26.9
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
...++.++.|++.+++++...|++ ++||+|+
T Consensus 153 ~~~LS~Gq~qrv~laral~~~p~l-lllDEPt 183 (259)
T PRK14274 153 ALSLSGGQQQRLCIARALATNPDV-LLMDEPT 183 (259)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCE-EEEcCCc
Confidence 345677899999999999999998 7799999
No 457
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.70 E-value=6.4e-08 Score=74.43 Aligned_cols=31 Identities=29% Similarity=0.586 Sum_probs=26.8
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
...++.++.|++.+++++...|++ ++||+|+
T Consensus 180 ~~~LSgGq~qrv~LAraL~~~p~l-llLDEPt 210 (286)
T PRK14275 180 ALGLSGGQQQRLCVARTLAVEPEI-LLLDEPT 210 (286)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCC
Confidence 344667799999999999999998 7799999
No 458
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.70 E-value=1.9e-08 Score=85.37 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=59.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH---HHhcCCh-------hhHHHHHHhhcCCCCCHHHHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR---EIASNSE-------YGTTILNTIKEGKIVPSEVTVSLIQK 79 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~---~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~i~~ 79 (196)
-+++|+||+||||||++++|+ |....+.|.+... .+....+ ......+.+..............+..
T Consensus 339 e~~~l~G~NGsGKSTLlk~l~---G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 415 (638)
T PRK10636 339 SRIGLLGRNGAGKSTLIKLLA---GELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLG 415 (638)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHH
Confidence 488999999999999999999 6554444443210 0011011 00111222211000001111122222
Q ss_pred HHhcCC-CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 80 EMESSD-SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 80 ~l~~~~-~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.+.... ....-+..++.++.+++.++.++...|++ ++||+|+
T Consensus 416 ~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~l-LlLDEPt 458 (638)
T PRK10636 416 GFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNL-LLLDEPT 458 (638)
T ss_pred HcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCC
Confidence 222211 11112556778899999999999999998 7799999
No 459
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.70 E-value=4.2e-08 Score=78.42 Aligned_cols=147 Identities=18% Similarity=0.222 Sum_probs=91.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH---------------HHhcCChh-----hHHHHHHhhcCC---
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR---------------EIASNSEY-----GTTILNTIKEGK--- 66 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~---------------~~~~~~~~-----~~~~~~~l~~~~--- 66 (196)
-+-+|.|-+|+||||+.++|. |+...+.|+++.+ .+....++ ..+..+++.-|.
T Consensus 31 eIHaLLGENGAGKSTLm~iL~---G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~ 107 (501)
T COG3845 31 EIHALLGENGAGKSTLMKILF---GLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPS 107 (501)
T ss_pred cEEEEeccCCCCHHHHHHHHh---CcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccc
Confidence 366899999999999999999 9888888777422 12222222 122333333322
Q ss_pred ---CCCHHHHHHHHHHHHh---cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh--------HHHHHHHhhc
Q 029287 67 ---IVPSEVTVSLIQKEME---SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE--------EEMVNRVLNR 132 (196)
Q Consensus 67 ---~~~~~~~~~~i~~~l~---~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~--------~~~~~Rl~~r 132 (196)
.+........+.+..+ ..-.-...+..++.+.+|++.+.+++...+++ +.||+|+ +.+++.+.+-
T Consensus 108 ~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~i-LILDEPTaVLTP~E~~~lf~~l~~l 186 (501)
T COG3845 108 KGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARL-LILDEPTAVLTPQEADELFEILRRL 186 (501)
T ss_pred cccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCE-EEEcCCcccCCHHHHHHHHHHHHHH
Confidence 1223333333333333 22122234777999999999999999999999 7799998 3334433321
Q ss_pred cCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEE
Q 029287 133 NEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYT 170 (196)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (196)
....... .|.+|-...+..++++..++.
T Consensus 187 ----~~~G~tI------i~ITHKL~Ev~~iaDrvTVLR 214 (501)
T COG3845 187 ----AAEGKTI------IFITHKLKEVMAIADRVTVLR 214 (501)
T ss_pred ----HHCCCEE------EEEeccHHHHHHhhCeeEEEe
Confidence 0111222 678888888888898777765
No 460
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.70 E-value=5.8e-08 Score=72.66 Aligned_cols=109 Identities=24% Similarity=0.325 Sum_probs=60.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH------------HHHHHhcCCh-----hhHHHHHHhhcCC---CCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL------------LRREIASNSE-----YGTTILNTIKEGK---IVP 69 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~------------~~~~~~~~~~-----~~~~~~~~l~~~~---~~~ 69 (196)
-+++|.|++||||||+++.|+ |....+.|.+ .++.....++ ....+.+++.... ...
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~---G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~ 103 (237)
T TIGR00968 27 SLVALLGPSGSGKSTLLRIIA---GLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHP 103 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcCCC
Confidence 488999999999999999999 5543333321 1111111110 1112333332211 111
Q ss_pred HHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 70 SEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 70 ~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.......+.+.+...+... .....++.++.+++.+++++...|++ ++||+|+
T Consensus 104 ~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l-lllDEP~ 158 (237)
T TIGR00968 104 KAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQV-LLLDEPF 158 (237)
T ss_pred HHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCc
Confidence 1111222333333222111 12345777899999999999999998 7799999
No 461
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.69 E-value=2.9e-07 Score=77.08 Aligned_cols=31 Identities=29% Similarity=0.587 Sum_probs=27.7
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+..++.++.+++.++.++...|++ ++||+|+
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~l-LLLDEPt 189 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDM-LLLDEPT 189 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCE-EEEcCCC
Confidence 456778899999999999999998 7799999
No 462
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.68 E-value=6.1e-06 Score=61.00 Aligned_cols=46 Identities=22% Similarity=0.429 Sum_probs=39.7
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcC
Q 029287 6 GKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASN 51 (196)
Q Consensus 6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~ 51 (196)
+..|.+|.|-|+||.||||++..|+.++|+.++-..|.+|+.+.+.
T Consensus 86 ~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~i 131 (299)
T COG2074 86 MKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKI 131 (299)
T ss_pred cCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHh
Confidence 4568899999999999999999999999999987778877766543
No 463
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.68 E-value=3e-08 Score=81.99 Aligned_cols=109 Identities=17% Similarity=0.239 Sum_probs=63.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH---------------HHHHhcCChh-----hHHHHHHhhcCC---
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL---------------RREIASNSEY-----GTTILNTIKEGK--- 66 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~---------------~~~~~~~~~~-----~~~~~~~l~~~~--- 66 (196)
-+++|.|++||||||++++|+ |....+.|.+. ++.+....+. ...+.+++..+.
T Consensus 31 e~~~l~G~nGsGKSTLl~~l~---Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~ 107 (501)
T PRK11288 31 QVHALMGENGAGKSTLLKILS---GNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPH 107 (501)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhccccc
Confidence 478999999999999999999 66544433321 1111111111 112334333211
Q ss_pred ---CCCHHHHHHHHHHHHhcCC---CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 67 ---IVPSEVTVSLIQKEMESSD---SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 67 ---~~~~~~~~~~i~~~l~~~~---~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
..........+.+.+...+ ....-+..++.++.|++.+++++...|++ ++||+|+
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l-llLDEPt 168 (501)
T PRK11288 108 KGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARV-IAFDEPT 168 (501)
T ss_pred ccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCE-EEEcCCC
Confidence 0112222223333333221 11122456777899999999999999998 7899999
No 464
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.68 E-value=6.7e-08 Score=73.99 Aligned_cols=109 Identities=23% Similarity=0.351 Sum_probs=61.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCChh------hHHHHHHhhcC---C
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSEY------GTTILNTIKEG---K 66 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~~------~~~~~~~l~~~---~ 66 (196)
-+++|.|++||||||+++.|+ |....+.|.+. ++.+....+. ...+.+++..+ .
T Consensus 34 e~~~I~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~ 110 (277)
T PRK13642 34 EWVSIIGQNGSGKSTTARLID---GLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ 110 (277)
T ss_pred CEEEEECCCCCcHHHHHHHHh---cCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc
Confidence 478999999999999999999 55443333221 1111111111 11223333211 1
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 67 IVPSEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 67 ~~~~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
........+.+...+...+-..+ -...++.++.|++.+++++...|++ +++|+|+
T Consensus 111 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~l-lllDEPt 168 (277)
T PRK13642 111 GIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEI-IILDEST 168 (277)
T ss_pred CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE-EEEeCCc
Confidence 11222222233333332221111 1345677799999999999999998 7799999
No 465
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.68 E-value=5.9e-08 Score=72.53 Aligned_cols=109 Identities=24% Similarity=0.347 Sum_probs=61.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH------------HHHHhcCCh-----hhHHHHHHhhcC---CCCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL------------RREIASNSE-----YGTTILNTIKEG---KIVP 69 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~------------~~~~~~~~~-----~~~~~~~~l~~~---~~~~ 69 (196)
-+++|.|++||||||+++.|+ |....+.|++. ++.+....+ ......+++... ....
T Consensus 26 e~~~i~G~nG~GKStLl~~l~---G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~ 102 (235)
T cd03299 26 DYFVILGPTGSGKSVLLETIA---GFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVD 102 (235)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCCC
Confidence 488999999999999999999 76555544331 111110000 011222322211 0011
Q ss_pred HHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 70 SEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 70 ~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.......+.+.+.......+ -+..++.++.+++.++.++...|++ ++||+|+
T Consensus 103 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l-lllDEPt 157 (235)
T cd03299 103 KKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKI-LLLDEPF 157 (235)
T ss_pred HHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCE-EEECCCc
Confidence 11122223333332221111 1345677899999999999999998 7799999
No 466
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.68 E-value=7.2e-08 Score=71.90 Aligned_cols=109 Identities=23% Similarity=0.370 Sum_probs=59.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH------------HHHHhcCCh-----hhHHHHHHhhcC---CCCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL------------RREIASNSE-----YGTTILNTIKEG---KIVP 69 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~------------~~~~~~~~~-----~~~~~~~~l~~~---~~~~ 69 (196)
-+++|.|++||||||++++|+ |....+.|.+. ++......+ .+..+.+.+..+ ....
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~---g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~ 103 (232)
T cd03300 27 EFFTLLGPSGCGKTTLLRLIA---GFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLP 103 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcCCC
Confidence 588999999999999999999 55444433221 111111000 011222222211 0011
Q ss_pred HHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 70 SEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 70 ~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.......+...+...+...+ ....++.++.+++.+++++...|++ ++||+|+
T Consensus 104 ~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l-lllDEP~ 158 (232)
T cd03300 104 KAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKV-LLLDEPL 158 (232)
T ss_pred HHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCc
Confidence 11111222333332111111 2345777899999999999999999 7799999
No 467
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.68 E-value=4.9e-08 Score=74.52 Aligned_cols=31 Identities=26% Similarity=0.588 Sum_probs=26.9
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
...++.++.|++.+++++...|++ ++||+|+
T Consensus 165 ~~~LSgGe~qrv~laraL~~~p~l-llLDEPt 195 (271)
T PRK14238 165 AYGLSGGQQQRLCIARCLAIEPDV-ILMDEPT 195 (271)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCE-EEEeCCC
Confidence 345777899999999999999998 7799999
No 468
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.68 E-value=7.1e-08 Score=72.56 Aligned_cols=30 Identities=20% Similarity=0.480 Sum_probs=26.5
Q ss_pred eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 92 DGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
..++.++.|++.+++++...|++ ++||+|+
T Consensus 141 ~~LS~G~~qrv~laral~~~p~l-llLDEP~ 170 (246)
T PRK14269 141 LALSGGQQQRLCIARALAIKPKL-LLLDEPT 170 (246)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCE-EEEcCCc
Confidence 44677799999999999999999 7799999
No 469
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.68 E-value=5.7e-08 Score=81.79 Aligned_cols=109 Identities=20% Similarity=0.291 Sum_probs=65.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCC-CCH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKI-VPS 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~-~~~ 70 (196)
-.++|.|++||||||+++.|+ |....+.|.+ .++.....++ ...++++++..+.. ..+
T Consensus 362 ~~~~ivG~sGsGKSTL~~ll~---g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~ 438 (585)
T TIGR01192 362 QTVAIVGPTGAGKTTLINLLQ---RVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATD 438 (585)
T ss_pred CEEEEECCCCCCHHHHHHHHc---cCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCH
Confidence 578999999999999999999 4433333322 2222222221 23356777766533 233
Q ss_pred HHHHHHHH-----HHHhc-CC-CCcEEE---eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 71 EVTVSLIQ-----KEMES-SD-SKKFLI---DGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 71 ~~~~~~i~-----~~l~~-~~-~~~~ii---d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+....... +.+.. .. .+..+- ..++.++.|++.+++++...|++ ++||+|+
T Consensus 439 ~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~i-lilDEpt 499 (585)
T TIGR01192 439 EEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPI-LVLDEAT 499 (585)
T ss_pred HHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE-EEEECCc
Confidence 33322211 11211 11 122222 23667799999999999999999 7799999
No 470
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.68 E-value=8.9e-09 Score=85.97 Aligned_cols=111 Identities=17% Similarity=0.269 Sum_probs=65.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCC-CCH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKI-VPS 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~-~~~ 70 (196)
-.++|.|++||||||+++.|+..+ ..+.|.+ .++.....++ ...++++++..+.. ..+
T Consensus 345 ~~~~ivG~sGsGKSTL~~ll~g~~---~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~ 421 (544)
T TIGR01842 345 EALAIIGPSGSGKSTLARLIVGIW---PPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADP 421 (544)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCH
Confidence 478999999999999999999443 3333221 2222222221 12256777764332 333
Q ss_pred HHHHHH-----HHHHHhcC--CCCcEE---EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 71 EVTVSL-----IQKEMESS--DSKKFL---IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 71 ~~~~~~-----i~~~l~~~--~~~~~i---id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
+..... +.+.+..- +.+..+ ...++.++.|++.+++++..+|++ ++||+|+.-
T Consensus 422 ~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~i-lilDEpts~ 484 (544)
T TIGR01842 422 EKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKL-VVLDEPNSN 484 (544)
T ss_pred HHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCE-EEEeCCccc
Confidence 332221 11222221 112222 234667899999999999999998 779999943
No 471
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=98.67 E-value=2.1e-08 Score=74.77 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=26.3
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 5 GGKGPFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 5 ~~~~~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
..+.|++|+|.|++|+||||+++.|..-+
T Consensus 78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll 106 (283)
T COG1072 78 NQQRPFIIGIAGSVAVGKSTTARILQALL 106 (283)
T ss_pred CCCCCEEEEeccCccccHHHHHHHHHHHH
Confidence 45678999999999999999999999876
No 472
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=2.3e-08 Score=84.86 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=27.9
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+..++.++.+++.++.++...|++ ++||+|+
T Consensus 147 ~~~LSgGerqRv~LA~aL~~~P~l-LLLDEPt 177 (638)
T PRK10636 147 VSDFSGGWRMRLNLAQALICRSDL-LLLDEPT 177 (638)
T ss_pred hhhcCHHHHHHHHHHHHHccCCCE-EEEcCCC
Confidence 456778899999999999999998 8899999
No 473
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.66 E-value=7.3e-08 Score=72.61 Aligned_cols=30 Identities=27% Similarity=0.601 Sum_probs=26.2
Q ss_pred eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 92 DGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
..++.++.|++.+++++...|++ ++||+|+
T Consensus 144 ~~LS~G~~qrv~laral~~~p~l-lllDEP~ 173 (249)
T PRK14253 144 FGLSGGQQQRLCIARTIAMEPDV-ILMDEPT 173 (249)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCE-EEEeCCC
Confidence 34667799999999999999998 7799999
No 474
>PLN03232 ABC transporter C family member; Provisional
Probab=98.66 E-value=5.1e-08 Score=89.65 Aligned_cols=109 Identities=19% Similarity=0.292 Sum_probs=69.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--HHHHHhcCCh----hhHHHHHHhhcCCCCCHHHHHHHHHHH---
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--LRREIASNSE----YGTTILNTIKEGKIVPSEVTVSLIQKE--- 80 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~i~~~--- 80 (196)
-.++|+|++||||||+++.|. |......|.+ ++..+...++ ...++++++..|...+++...+.+...
T Consensus 644 e~vaIvG~sGSGKSTLl~lLl---G~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~ 720 (1495)
T PLN03232 644 SLVAIVGGTGEGKTSLISAML---GELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQ 720 (1495)
T ss_pred CEEEEECCCCCcHHHHHHHHh---CCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCH
Confidence 478999999999999999999 5444433321 1222222222 234588888887765544333322211
Q ss_pred --Hh-cCC-CCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 81 --ME-SSD-SKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 81 --l~-~~~-~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+. .++ ....|-+ .++.+++||+++++++..+|++ ++||+|+
T Consensus 721 ~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~I-lLLDEpt 768 (1495)
T PLN03232 721 HDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDI-YIFDDPL 768 (1495)
T ss_pred HHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCE-EEEcCCc
Confidence 11 112 2334433 3667899999999999999998 7799998
No 475
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.66 E-value=1.2e-07 Score=71.76 Aligned_cols=32 Identities=19% Similarity=0.471 Sum_probs=27.3
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
...++.++.++..+++++...|++ ++||+|+.
T Consensus 151 ~~~LS~G~~qrl~laral~~~P~l-lllDEPt~ 182 (257)
T PRK14246 151 ASQLSGGQQQRLTIARALALKPKV-LLMDEPTS 182 (257)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCE-EEEcCCCc
Confidence 344677799999999999999999 77999993
No 476
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.66 E-value=4.1e-08 Score=81.24 Aligned_cols=109 Identities=14% Similarity=0.171 Sum_probs=61.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcee--chhHHH---------------HHHHhcCChh-----hHHHHHHhhcCCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHL--SAGELL---------------RREIASNSEY-----GTTILNTIKEGKI 67 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i--~~~~~~---------------~~~~~~~~~~-----~~~~~~~l~~~~~ 67 (196)
-+++|.|++||||||+++.|+ |.... +.|.+. ++.+....+. ...+.+++..+..
T Consensus 28 e~~~liG~nGsGKSTLl~~i~---G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 104 (500)
T TIGR02633 28 ECVGLCGENGAGKSTLMKILS---GVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNE 104 (500)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhcc
Confidence 488999999999999999999 65432 233221 1111111111 1123333322110
Q ss_pred -------CCHHHHHHHHHHHHhcCCCCc----EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 68 -------VPSEVTVSLIQKEMESSDSKK----FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 68 -------~~~~~~~~~i~~~l~~~~~~~----~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.........+.+.+....-.. .-+..++.++.|++.++.++...|++ ++||+|+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~l-llLDEPt 169 (500)
T TIGR02633 105 ITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARL-LILDEPS 169 (500)
T ss_pred ccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCE-EEEeCCC
Confidence 111112222333333222111 12456788899999999999999998 8899999
No 477
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.66 E-value=1.8e-07 Score=71.16 Aligned_cols=31 Identities=26% Similarity=0.570 Sum_probs=26.9
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
...++.++.+++.+++++...|++ ++||+|+
T Consensus 159 ~~~LS~G~~qrv~laral~~~p~l-lllDEPt 189 (265)
T PRK14252 159 AFNLSGGQQQRLCIARALATDPEI-LLFDEPT 189 (265)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCE-EEEeCCC
Confidence 345677799999999999999998 7799999
No 478
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.65 E-value=3.1e-08 Score=81.64 Aligned_cols=108 Identities=16% Similarity=0.222 Sum_probs=62.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH----------HHHHhcCChhhHHHHHHhhcCCCC-CHHHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL----------RREIASNSEYGTTILNTIKEGKIV-PSEVTVSLIQ 78 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~i~ 78 (196)
=+|+|+||+|+||||+++.|+...+ ...|.+. .+...... ....+.+++....+. ....+...+.
T Consensus 349 ~riaiiG~NG~GKSTLlk~l~g~~~---~~~G~v~~g~~v~igyf~Q~~~~l~-~~~t~~d~l~~~~~~~~e~~~r~~L~ 424 (530)
T COG0488 349 DRIAIVGPNGAGKSTLLKLLAGELG---PLSGTVKVGETVKIGYFDQHRDELD-PDKTVLEELSEGFPDGDEQEVRAYLG 424 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcc---cCCceEEeCCceEEEEEEehhhhcC-ccCcHHHHHHhhCccccHHHHHHHHH
Confidence 4789999999999999999974432 1122111 11100100 111344444443322 1233333333
Q ss_pred HHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 79 KEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 79 ~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+.+-......--+..++.+++.++.++..+...|.+ ++||+|+
T Consensus 425 ~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNv-LiLDEPT 467 (530)
T COG0488 425 RFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNL-LLLDEPT 467 (530)
T ss_pred HcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCE-EEEcCCC
Confidence 333322222234666888999999999999989998 7899998
No 479
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.65 E-value=2.4e-07 Score=70.56 Aligned_cols=30 Identities=27% Similarity=0.525 Sum_probs=26.1
Q ss_pred eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 92 DGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
..++.++.|++.+++++...|++ ++||+|+
T Consensus 162 ~~LS~G~~qrl~laral~~~p~l-llLDEPt 191 (267)
T PRK14237 162 LTLSGGQQQRLCIARAIAVKPDI-LLMDEPA 191 (267)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCE-EEEeCCc
Confidence 34666799999999999999998 7799999
No 480
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.65 E-value=1.5e-07 Score=71.05 Aligned_cols=31 Identities=23% Similarity=0.581 Sum_probs=26.9
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
...++.++.|++.++.++...|++ ++||+|+
T Consensus 146 ~~~LS~G~~qrv~laral~~~p~l-lllDEPt 176 (252)
T PRK14239 146 ALGLSGGQQQRVCIARVLATSPKI-ILLDEPT 176 (252)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCE-EEEcCCc
Confidence 345777899999999999999998 7799999
No 481
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=1.1e-07 Score=71.77 Aligned_cols=32 Identities=16% Similarity=0.430 Sum_probs=27.4
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
...++.++.+++.+++++...|++ ++||+|+.
T Consensus 147 ~~~LS~G~~qrv~laral~~~p~l-llLDEP~~ 178 (253)
T PRK14261 147 ALSLSGGQQQRLCIARTLAVNPEV-ILMDEPCS 178 (253)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCcc
Confidence 345777899999999999999999 77999993
No 482
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.64 E-value=4.4e-08 Score=91.23 Aligned_cols=109 Identities=17% Similarity=0.193 Sum_probs=63.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCChh-----hHHHHHHhhcC---CCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNSEY-----GTTILNTIKEG---KIV 68 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~~~-----~~~~~~~l~~~---~~~ 68 (196)
-+++|.|++||||||++++|+ |+...+.|++. ++.+...++. ..+..+.+... ...
T Consensus 957 ei~aLLG~NGAGKSTLLkiLa---GLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~ 1033 (2272)
T TIGR01257 957 QITAFLGHNGAGKTTTLSILT---GLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGR 1033 (2272)
T ss_pred cEEEEECCCCChHHHHHHHHh---cCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCC
Confidence 478999999999999999999 77655444331 1111111110 11223322211 011
Q ss_pred CHHHHHHHHHHHHh---cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 69 PSEVTVSLIQKEME---SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 69 ~~~~~~~~i~~~l~---~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
......+.+.+.+. .......-...++.+++|++.++.++...|++ ++||+|+
T Consensus 1034 ~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkV-LLLDEPT 1089 (2272)
T TIGR01257 1034 SWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKV-VVLDEPT 1089 (2272)
T ss_pred CHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE-EEEECCC
Confidence 11212222333333 22222223556778899999999999999999 7799999
No 483
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.64 E-value=1e-08 Score=74.72 Aligned_cols=99 Identities=21% Similarity=0.335 Sum_probs=55.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCc--eechhHHHHHHHhcCC-hhhHHHHH---HhhcCC-CCCHHHHHHHHHHHHh
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLT--HLSAGELLRREIASNS-EYGTTILN---TIKEGK-IVPSEVTVSLIQKEME 82 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~--~i~~~~~~~~~~~~~~-~~~~~~~~---~l~~~~-~~~~~~~~~~i~~~l~ 82 (196)
-+++|.|++||||||+++.|+ |.. ..+.|.+......... ......+. ++.... ..+..... +.+.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~---G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~----~~l~ 99 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIM---GHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNA----DFLR 99 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHH----HHHh
Confidence 488999999999999999999 763 3344433211100000 00000000 000000 00101111 1111
Q ss_pred cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 83 SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 83 ~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.....++.++.|++.+++++...|++ ++||+|+
T Consensus 100 ------~~~~~LS~G~~qrv~laral~~~p~i-lllDEPt 132 (200)
T cd03217 100 ------YVNEGFSGGEKKRNEILQLLLLEPDL-AILDEPD 132 (200)
T ss_pred ------hccccCCHHHHHHHHHHHHHhcCCCE-EEEeCCC
Confidence 11245777899999999999999998 7799999
No 484
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.63 E-value=1.3e-07 Score=65.84 Aligned_cols=114 Identities=19% Similarity=0.263 Sum_probs=62.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhC----Ccee-chhHHH--------------HHHHhcCChh----------hHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYG----LTHL-SAGELL--------------RREIASNSEY----------GTTILN 60 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~----~~~i-~~~~~~--------------~~~~~~~~~~----------~~~~~~ 60 (196)
-++++.||+||||||+++.|-..|. ...+ ..|+++ ++-+...+++ ......
T Consensus 38 ECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaeP 117 (235)
T COG4778 38 ECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEP 117 (235)
T ss_pred cEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhH
Confidence 3788999999999999999997772 1111 112221 1111111111 111122
Q ss_pred HhhcCCCCCH-HHHHHHHHHHHhcCCCCcEEE--eCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287 61 TIKEGKIVPS-EVTVSLIQKEMESSDSKKFLI--DGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM 125 (196)
Q Consensus 61 ~l~~~~~~~~-~~~~~~i~~~l~~~~~~~~ii--d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~ 125 (196)
.+..|..... ......+...+... .+.|-+ ..|+.+.+|++.+++.+.....+ ++||+|+..+
T Consensus 118 ll~~gv~~~~a~~~a~~Ll~rLnlp-erLW~LaPaTFSGGEqQRVNIaRgfivd~pI-LLLDEPTasL 183 (235)
T COG4778 118 LLARGVPREVARAKAADLLTRLNLP-ERLWSLAPATFSGGEQQRVNIARGFIVDYPI-LLLDEPTASL 183 (235)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCC-HHHhcCCCcccCCchheehhhhhhhhccCce-EEecCCcccc
Confidence 2333322221 12233444444432 233422 23677899999999998766666 7899998654
No 485
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.63 E-value=1e-07 Score=78.62 Aligned_cols=31 Identities=29% Similarity=0.534 Sum_probs=26.7
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+..++.+..-++.+++++...||+ ++||+|+
T Consensus 151 ~~~LSGG~r~Rv~LA~aL~~~pDl-LLLDEPT 181 (530)
T COG0488 151 VSSLSGGWRRRVALARALLEEPDL-LLLDEPT 181 (530)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCE-EEEcCCC
Confidence 445666788899999999999999 8899998
No 486
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.63 E-value=9.7e-08 Score=72.72 Aligned_cols=31 Identities=19% Similarity=0.499 Sum_probs=27.1
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
...++.++.|++.+++++...|++ ++||+|+
T Consensus 161 ~~~LSgGq~qrv~laral~~~p~l-llLDEPt 191 (267)
T PRK14235 161 GTGLSGGQQQRLCIARAIAVSPEV-ILMDEPC 191 (267)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCE-EEEeCCC
Confidence 345777899999999999999998 7799999
No 487
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.62 E-value=1.3e-08 Score=86.35 Aligned_cols=108 Identities=19% Similarity=0.247 Sum_probs=61.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH---HhcCCh------hhHHHHHHhhcCCC-C-CHHHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE---IASNSE------YGTTILNTIKEGKI-V-PSEVTVSLIQ 78 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~---~~~~~~------~~~~~~~~l~~~~~-~-~~~~~~~~i~ 78 (196)
-+++|+|++||||||++++|+ |....+.|.+.... +....+ ....+.+++..+.. . ... ....+.
T Consensus 346 e~~~l~G~NGsGKSTLlk~l~---G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~-~~~~~~ 421 (635)
T PRK11147 346 DKIALIGPNGCGKTTLLKLML---GQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNG-RPRHVL 421 (635)
T ss_pred CEEEEECCCCCcHHHHHHHHh---CCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccc-hHHHHH
Confidence 478999999999999999999 66544444432100 011111 11123333332110 0 000 011222
Q ss_pred HHHhcCC----CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 79 KEMESSD----SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 79 ~~l~~~~----~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
..+.... ....-+..++.++.+++.++.++...|++ ++||+|+
T Consensus 422 ~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~l-LlLDEPt 468 (635)
T PRK11147 422 GYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNL-LILDEPT 468 (635)
T ss_pred HHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCC
Confidence 2332111 11112456778899999999999999998 8899999
No 488
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.62 E-value=1.5e-08 Score=75.30 Aligned_cols=33 Identities=21% Similarity=0.431 Sum_probs=27.7
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
+..++.++.|++.+++++...|++ ++||+|+..
T Consensus 141 ~~~LS~G~~qrl~laral~~~p~i-lllDEP~~g 173 (226)
T cd03234 141 VKGISGGERRRVSIAVQLLWDPKV-LILDEPTSG 173 (226)
T ss_pred ccCcCHHHHHHHHHHHHHHhCCCE-EEEeCCCcC
Confidence 345677899999999999999998 779999944
No 489
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.62 E-value=6.6e-08 Score=72.56 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 93 GFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.++.++.|++.++.++...|++ ++||+|+
T Consensus 144 ~LS~G~~qrl~la~al~~~p~l-lllDEPt 172 (243)
T TIGR01978 144 GFSGGEKKRNEILQMALLEPKL-AILDEID 172 (243)
T ss_pred CcCHHHHHHHHHHHHHhcCCCE-EEecCCc
Confidence 4777899999999999999998 7799999
No 490
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=98.62 E-value=2.8e-07 Score=74.03 Aligned_cols=112 Identities=18% Similarity=0.266 Sum_probs=66.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh----CCceechhHH-------HHHHHhcCChhhHHHH----HHhhcCCCC-CHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY----GLTHLSAGEL-------LRREIASNSEYGTTIL----NTIKEGKIV-PSEVT 73 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~----~~~~i~~~~~-------~~~~~~~~~~~~~~~~----~~l~~~~~~-~~~~~ 73 (196)
..+++.||+|+||||+.+.|.+.| |...+|..|+ .|..+.-.++....+. -+++.+.+- .++++
T Consensus 565 ktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~Asneev 644 (790)
T KOG0056|consen 565 KTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEV 644 (790)
T ss_pred cEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHH
Confidence 589999999999999999999988 4455555444 3444444444332222 233333332 12222
Q ss_pred H-----HHHHHHHhc-CC-CCcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 74 V-----SLIQKEMES-SD-SKKFLIDG---FPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 74 ~-----~~i~~~l~~-~~-~~~~iid~---~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
. ..|.+.+.. ++ ...-|-++ ++.+++|++++++.+...|.+ |+||+-+
T Consensus 645 yaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~i-IlLDEAT 702 (790)
T KOG0056|consen 645 YAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSI-ILLDEAT 702 (790)
T ss_pred HHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcE-EEEcchh
Confidence 1 122222222 11 12223332 566799999999999989998 6677654
No 491
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.62 E-value=4.8e-08 Score=81.75 Aligned_cols=31 Identities=29% Similarity=0.575 Sum_probs=27.8
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+..++.++.|++.++.++...|++ ++||+|+
T Consensus 161 ~~~LSgGqkqrv~la~al~~~p~v-lLLDEPt 191 (556)
T PRK11819 161 VTKLSGGERRRVALCRLLLEKPDM-LLLDEPT 191 (556)
T ss_pred hhhcCHHHHHHHHHHHHHhCCCCE-EEEcCCC
Confidence 456778899999999999999998 8899999
No 492
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.61 E-value=2.7e-07 Score=69.63 Aligned_cols=31 Identities=29% Similarity=0.632 Sum_probs=27.1
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+..++.++.+++.+++++...|++ ++||+|+
T Consensus 146 ~~~LS~G~~qrv~laral~~~p~l-lllDEP~ 176 (252)
T PRK14272 146 ATGLSGGQQQRLCIARALAVEPEI-LLMDEPT 176 (252)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCE-EEEeCCC
Confidence 445777899999999999999998 7799999
No 493
>PLN02165 adenylate isopentenyltransferase
Probab=98.61 E-value=1.9e-07 Score=72.37 Aligned_cols=34 Identities=15% Similarity=0.415 Sum_probs=31.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL 43 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~ 43 (196)
.+++|+||+||||||++..|++.++..+++.|.+
T Consensus 44 ~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 44 KVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 4889999999999999999999999888888766
No 494
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.61 E-value=1.8e-07 Score=85.54 Aligned_cols=110 Identities=19% Similarity=0.330 Sum_probs=64.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCce---echhHH----------HHHHHhcCCh-----hhHHHHHHhhcC------
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTH---LSAGEL----------LRREIASNSE-----YGTTILNTIKEG------ 65 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~---i~~~~~----------~~~~~~~~~~-----~~~~~~~~l~~~------ 65 (196)
-+++|.|++||||||+++.|+ |... ++.|++ +++......+ ...++++.+...
T Consensus 790 e~~aI~G~sGaGKSTLL~~La---g~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~ 866 (1394)
T TIGR00956 790 TLTALMGASGAGKTTLLNVLA---ERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQP 866 (1394)
T ss_pred EEEEEECCCCCCHHHHHHHHh---CCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHHHHHHHHhCCC
Confidence 478999999999999999999 5432 222222 2222222111 122344444321
Q ss_pred CCCCHHHHHH---HHHHHHhcCCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 66 KIVPSEVTVS---LIQKEMESSDSKKFLID----GFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 66 ~~~~~~~~~~---~i~~~l~~~~~~~~iid----~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
....+....+ .+.+.+.........+. +++.++.+++.++.++..+|+.+++||+|+
T Consensus 867 ~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPT 930 (1394)
T TIGR00956 867 KSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPT 930 (1394)
T ss_pred CCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCC
Confidence 1122222222 33333333332222333 688899999999999999998458999999
No 495
>PLN03130 ABC transporter C family member; Provisional
Probab=98.61 E-value=5.5e-08 Score=89.82 Aligned_cols=109 Identities=16% Similarity=0.285 Sum_probs=69.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceech-hHH-HHHHHhcCCh----hhHHHHHHhhcCCCCCHHHHHHHHHH----
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSA-GEL-LRREIASNSE----YGTTILNTIKEGKIVPSEVTVSLIQK---- 79 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~-~~~-~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~i~~---- 79 (196)
-.++|+|++||||||+++.|...+ .... |.+ ++..+...++ ...++++++..|....++...+.+..
T Consensus 644 e~vaIvG~sGSGKSTLl~lLlG~~---~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~ 720 (1622)
T PLN03130 644 SLVAIVGSTGEGKTSLISAMLGEL---PPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQ 720 (1622)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh---ccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcH
Confidence 578999999999999999999555 2333 332 1222222222 23458888888776554433222221
Q ss_pred -HHh-cCCC-CcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 80 -EME-SSDS-KKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 80 -~l~-~~~~-~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.+. .+.+ ...|-+ .++.+++||+++++++...|++ ++||.|.
T Consensus 721 ~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~I-lLLDEpt 768 (1622)
T PLN03130 721 HDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDV-YIFDDPL 768 (1622)
T ss_pred HHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCE-EEECCCc
Confidence 111 1122 333333 2777899999999999999998 7799998
No 496
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.61 E-value=4e-08 Score=83.71 Aligned_cols=108 Identities=16% Similarity=0.231 Sum_probs=63.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH---HHHhcCC-----hhhHHHHHHhhcCCC--------CCHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR---REIASNS-----EYGTTILNTIKEGKI--------VPSEVT 73 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~---~~~~~~~-----~~~~~~~~~l~~~~~--------~~~~~~ 73 (196)
-+++|+|++||||||+++.|+ |....+.|.+.. +.+...+ ..+ .+++++..+.. ..+...
T Consensus 479 e~~~IvG~nGsGKSTLl~lL~---Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i 554 (659)
T TIGR00954 479 NHLLICGPNGCGKSSLFRILG---ELWPVYGGRLTKPAKGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDL 554 (659)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCCCeEeecCCCcEEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHH
Confidence 478999999999999999999 654444444321 1111111 112 45666554321 112221
Q ss_pred HHHHHHHHhcC------CC----CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 74 VSLIQKEMESS------DS----KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 74 ~~~i~~~l~~~------~~----~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
.+. .+.+... .+ ..+ ...++.++.|++.+++++...|++ ++||+|+..
T Consensus 555 ~~~-l~~~~l~~~~~~~~g~~~~~~~-~~~LSgGqkQRl~iARal~~~p~i-llLDEpts~ 612 (659)
T TIGR00954 555 EQI-LDNVQLTHILEREGGWSAVQDW-MDVLSGGEKQRIAMARLFYHKPQF-AILDECTSA 612 (659)
T ss_pred HHH-HHHcCCHHHHhhcCCccccccc-ccCCCHHHHHHHHHHHHHHcCCCE-EEEeCCccC
Confidence 111 1111110 00 111 245777899999999999999998 779999943
No 497
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.60 E-value=7.7e-08 Score=72.88 Aligned_cols=31 Identities=29% Similarity=0.571 Sum_probs=27.2
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+..++.++.|++.+++++...|++ ++||+|+
T Consensus 146 ~~~LS~G~~qrv~laral~~~p~l-lllDEPt 176 (258)
T PRK14241 146 GGGLSGGQQQRLCIARAIAVEPDV-LLMDEPC 176 (258)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCE-EEEcCCC
Confidence 455777899999999999999998 7799999
No 498
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.59 E-value=2.1e-07 Score=67.09 Aligned_cols=111 Identities=22% Similarity=0.367 Sum_probs=62.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH-----------------HHHHHhcCCh--hhHHHHHHhhcCCCC--
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL-----------------LRREIASNSE--YGTTILNTIKEGKIV-- 68 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~-----------------~~~~~~~~~~--~~~~~~~~l~~~~~~-- 68 (196)
-+.+|.||+||||||+++.|+-.+ ..+.|.+ .+..++..+. +.....+.+.-|..-
T Consensus 28 ev~ailGPNGAGKSTlLk~LsGel---~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~ 104 (259)
T COG4559 28 EVLAILGPNGAGKSTLLKALSGEL---SPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHR 104 (259)
T ss_pred cEEEEECCCCccHHHHHHHhhCcc---CCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccc
Confidence 477889999999999999999554 2222221 1122222222 222244555443221
Q ss_pred ---CHHHHHHHHHHHHhcCCCCcEE---EeCCCCCHHHHHHHHHHhC----CCCcE-EEEeecChH
Q 029287 69 ---PSEVTVSLIQKEMESSDSKKFL---IDGFPRSEENRAAFERIMG----AEPDI-VLFFDCPEE 123 (196)
Q Consensus 69 ---~~~~~~~~i~~~l~~~~~~~~i---id~~~~~~~~~~~~~~~~~----~~p~~-~i~ld~~~~ 123 (196)
............+...+..++- .-.++.++.|++.+++.+. +.|+- .+|||+|+.
T Consensus 105 ~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPts 170 (259)
T COG4559 105 SGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTS 170 (259)
T ss_pred cCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCcc
Confidence 1112344456666655554432 1225567899999888652 22333 699999993
No 499
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.58 E-value=7.8e-09 Score=79.18 Aligned_cols=109 Identities=19% Similarity=0.245 Sum_probs=59.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH-HhcCCh----hhHHHHHHhhcCCCCCHHHHHHH-----HHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE-IASNSE----YGTTILNTIKEGKIVPSEVTVSL-----IQK 79 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~-~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~-----i~~ 79 (196)
-+++|.|++||||||++++|+ |....+.|.+.... +....+ ....+.+++..+........... +..
T Consensus 64 e~~~liG~NGsGKSTLl~~I~---Gl~~p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~ 140 (282)
T cd03291 64 EMLAITGSTGSGKTSLLMLIL---GELEPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEE 140 (282)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHH
Confidence 478999999999999999999 76554444332100 000000 00134444433221111111111 111
Q ss_pred HHhcCC-CCcEEE----eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 80 EMESSD-SKKFLI----DGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 80 ~l~~~~-~~~~ii----d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.+.... ...-.+ ..++.++.+++.++.++...|++ ++||+|+
T Consensus 141 ~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~i-LiLDEPt 187 (282)
T cd03291 141 DITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADL-YLLDSPF 187 (282)
T ss_pred HHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCE-EEEECCC
Confidence 111111 000012 34666799999999999999998 7799999
No 500
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.57 E-value=4.8e-07 Score=76.69 Aligned_cols=113 Identities=19% Similarity=0.218 Sum_probs=63.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCC-------ceechh----HHHHHHHhcCChh-----hHHHHHHhhcC------CC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGL-------THLSAG----ELLRREIASNSEY-----GTTILNTIKEG------KI 67 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~-------~~i~~~----~~~~~~~~~~~~~-----~~~~~~~l~~~------~~ 67 (196)
-+++|.||+||||||+++.|+....- ..++.. ...++......+. ..++++.+..+ ..
T Consensus 52 e~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 131 (617)
T TIGR00955 52 ELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRR 131 (617)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCC
Confidence 47899999999999999999943210 111110 1112222221111 12344444321 11
Q ss_pred CCHHHH---HHHHHHHHhcCCC-CcEEE-----eCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 68 VPSEVT---VSLIQKEMESSDS-KKFLI-----DGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 68 ~~~~~~---~~~i~~~l~~~~~-~~~ii-----d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
...... ...+.+.+..... +..+- .+++.++++++.++.++...|++ ++||+|+.
T Consensus 132 ~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~v-lllDEPts 195 (617)
T TIGR00955 132 VTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPL-LFCDEPTS 195 (617)
T ss_pred CCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCE-EEeeCCCc
Confidence 122222 2333333333222 22222 35888999999999999999998 88999993
Done!