Query 029287
Match_columns 196
No_of_seqs 107 out of 1648
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 17:05:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029287.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029287hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3umf_A Adenylate kinase; rossm 100.0 7.8E-37 2.7E-41 223.0 23.0 189 3-192 23-215 (217)
2 3sr0_A Adenylate kinase; phosp 100.0 8.7E-35 3E-39 211.2 23.2 178 10-189 1-203 (206)
3 3gmt_A Adenylate kinase; ssgci 100.0 8.1E-33 2.8E-37 202.4 20.5 179 9-188 8-227 (230)
4 3tlx_A Adenylate kinase 2; str 100.0 3E-30 1E-34 192.4 22.9 183 7-189 27-242 (243)
5 3dl0_A Adenylate kinase; phosp 100.0 7.9E-29 2.7E-33 181.7 23.8 182 10-191 1-215 (216)
6 3fb4_A Adenylate kinase; psych 100.0 1.6E-28 5.6E-33 179.9 23.3 182 10-191 1-215 (216)
7 1aky_A Adenylate kinase; ATP:A 100.0 2.6E-28 8.7E-33 179.5 23.3 183 7-189 2-218 (220)
8 1qf9_A UMP/CMP kinase, protein 100.0 1.6E-27 5.5E-32 171.5 25.6 184 8-191 5-192 (194)
9 1ak2_A Adenylate kinase isoenz 100.0 7.9E-28 2.7E-32 178.4 24.6 185 7-191 14-231 (233)
10 3be4_A Adenylate kinase; malar 100.0 3.9E-28 1.3E-32 178.2 22.3 180 8-187 4-216 (217)
11 2c95_A Adenylate kinase 1; tra 100.0 3.6E-27 1.2E-31 170.1 24.5 183 8-191 8-194 (196)
12 1e4v_A Adenylate kinase; trans 100.0 1.8E-27 6.1E-32 174.3 21.7 178 10-188 1-213 (214)
13 2xb4_A Adenylate kinase; ATP-b 100.0 1.7E-27 5.8E-32 175.5 21.5 179 10-188 1-222 (223)
14 2bwj_A Adenylate kinase 5; pho 100.0 2.5E-27 8.4E-32 171.4 21.9 184 8-192 11-198 (199)
15 1ukz_A Uridylate kinase; trans 100.0 1.3E-26 4.3E-31 168.3 25.7 185 6-191 12-202 (203)
16 2cdn_A Adenylate kinase; phosp 100.0 4.3E-27 1.5E-31 170.6 22.4 180 6-189 17-200 (201)
17 1zd8_A GTP:AMP phosphotransfer 100.0 4.7E-27 1.6E-31 173.5 22.1 183 7-192 5-216 (227)
18 1tev_A UMP-CMP kinase; ploop, 100.0 1.7E-26 5.9E-31 166.3 24.0 183 8-190 2-194 (196)
19 3cm0_A Adenylate kinase; ATP-b 100.0 6.7E-27 2.3E-31 167.5 21.1 177 8-188 3-184 (186)
20 1zak_A Adenylate kinase; ATP:A 99.9 6.6E-26 2.3E-30 166.8 19.9 184 7-193 3-213 (222)
21 2bbw_A Adenylate kinase 4, AK4 99.9 4E-22 1.4E-26 148.8 23.1 183 8-193 26-237 (246)
22 3lw7_A Adenylate kinase relate 99.9 2.6E-21 8.9E-26 136.8 20.7 173 10-192 2-178 (179)
23 4hlc_A DTMP kinase, thymidylat 99.9 2.5E-21 8.6E-26 140.4 18.9 171 9-193 2-203 (205)
24 3hjn_A DTMP kinase, thymidylat 99.9 4.5E-21 1.5E-25 138.3 17.1 168 10-194 1-195 (197)
25 4edh_A DTMP kinase, thymidylat 99.9 3.4E-20 1.2E-24 135.2 20.3 170 9-192 6-208 (213)
26 3v9p_A DTMP kinase, thymidylat 99.9 5.3E-21 1.8E-25 140.4 14.2 175 8-191 24-227 (227)
27 4tmk_A Protein (thymidylate ki 99.9 1.6E-20 5.6E-25 136.7 15.4 172 9-192 3-208 (213)
28 2z0h_A DTMP kinase, thymidylat 99.9 6.5E-20 2.2E-24 132.1 17.2 168 10-193 1-194 (197)
29 3lv8_A DTMP kinase, thymidylat 99.8 2.7E-20 9.3E-25 137.4 13.3 173 9-192 27-230 (236)
30 2pbr_A DTMP kinase, thymidylat 99.8 6.7E-19 2.3E-23 126.4 19.7 166 10-193 1-194 (195)
31 4eaq_A DTMP kinase, thymidylat 99.8 1.5E-18 5.1E-23 128.0 21.0 175 7-193 24-227 (229)
32 3kb2_A SPBC2 prophage-derived 99.8 4.1E-19 1.4E-23 125.2 17.3 151 10-192 2-168 (173)
33 3t61_A Gluconokinase; PSI-biol 99.8 4.2E-19 1.4E-23 128.5 17.6 161 8-191 17-180 (202)
34 3ld9_A DTMP kinase, thymidylat 99.8 4E-20 1.4E-24 135.2 10.9 172 7-192 19-217 (223)
35 3tmk_A Thymidylate kinase; pho 99.8 2.9E-19 9.8E-24 130.2 13.3 175 8-193 4-205 (216)
36 2wwf_A Thymidilate kinase, put 99.8 1.2E-19 3.9E-24 132.2 8.8 171 6-191 7-200 (212)
37 3vaa_A Shikimate kinase, SK; s 99.8 1.2E-18 4E-23 126.0 12.6 168 8-193 24-198 (199)
38 2v54_A DTMP kinase, thymidylat 99.8 6E-18 2.1E-22 122.4 15.1 168 8-193 3-193 (204)
39 1nks_A Adenylate kinase; therm 99.8 2E-17 7E-22 118.4 17.6 165 9-188 1-193 (194)
40 1nn5_A Similar to deoxythymidy 99.8 2.6E-18 8.9E-23 125.2 12.9 175 7-193 7-203 (215)
41 1jjv_A Dephospho-COA kinase; P 99.8 2.5E-17 8.6E-22 119.4 17.9 167 9-193 2-199 (206)
42 4i1u_A Dephospho-COA kinase; s 99.8 7.4E-18 2.5E-22 121.8 14.9 169 8-193 8-204 (210)
43 2plr_A DTMP kinase, probable t 99.8 2E-17 7E-22 120.2 15.5 168 9-193 4-210 (213)
44 1knq_A Gluconate kinase; ALFA/ 99.8 2.3E-16 7.8E-21 111.5 20.5 164 1-189 1-172 (175)
45 2rhm_A Putative kinase; P-loop 99.8 8.1E-18 2.8E-22 120.6 12.7 122 7-133 3-126 (193)
46 1vht_A Dephospho-COA kinase; s 99.8 2.3E-17 8E-22 120.7 15.1 168 8-193 3-197 (218)
47 1kht_A Adenylate kinase; phosp 99.8 5.8E-18 2E-22 121.2 11.4 172 9-188 3-191 (192)
48 1e6c_A Shikimate kinase; phosp 99.8 2.9E-17 9.9E-22 115.8 14.4 161 9-188 2-168 (173)
49 2f6r_A COA synthase, bifunctio 99.8 3.5E-17 1.2E-21 124.2 15.8 169 6-192 72-270 (281)
50 1ly1_A Polynucleotide kinase; 99.7 5.5E-17 1.9E-21 115.0 14.4 161 9-189 2-171 (181)
51 2jaq_A Deoxyguanosine kinase; 99.7 9.7E-17 3.3E-21 115.9 15.9 167 10-192 1-202 (205)
52 2pt5_A Shikimate kinase, SK; a 99.7 2.7E-17 9.2E-22 115.5 12.3 157 10-190 1-163 (168)
53 4eun_A Thermoresistant glucoki 99.7 2.6E-16 9E-21 113.6 17.2 158 9-190 29-193 (200)
54 1cke_A CK, MSSA, protein (cyti 99.7 9.6E-17 3.3E-21 117.9 14.7 171 9-192 5-224 (227)
55 2if2_A Dephospho-COA kinase; a 99.7 5.7E-17 1.9E-21 117.4 12.1 164 10-192 2-193 (204)
56 3trf_A Shikimate kinase, SK; a 99.7 1.2E-16 4.1E-21 113.9 13.4 164 9-191 5-175 (185)
57 1zuh_A Shikimate kinase; alpha 99.7 8E-17 2.7E-21 113.1 10.5 155 9-188 7-167 (168)
58 3ake_A Cytidylate kinase; CMP 99.7 5.3E-16 1.8E-20 112.4 14.9 163 11-189 4-207 (208)
59 3a4m_A L-seryl-tRNA(SEC) kinas 99.7 1.5E-16 5.1E-21 119.5 12.2 161 8-189 3-172 (260)
60 2iyv_A Shikimate kinase, SK; t 99.7 2.5E-16 8.5E-21 112.2 12.8 156 10-188 3-166 (184)
61 2qt1_A Nicotinamide riboside k 99.7 6.5E-17 2.2E-21 117.4 9.6 168 7-191 19-206 (207)
62 2vli_A Antibiotic resistance p 99.7 2.5E-15 8.5E-20 106.8 17.1 159 8-192 4-173 (183)
63 1via_A Shikimate kinase; struc 99.7 2.2E-16 7.5E-21 111.6 10.6 158 9-190 4-166 (175)
64 1y63_A LMAJ004144AAA protein; 99.7 3.2E-15 1.1E-19 106.6 16.5 162 8-193 9-177 (184)
65 1p5z_B DCK, deoxycytidine kina 99.7 4.1E-17 1.4E-21 122.7 6.7 81 110-193 173-261 (263)
66 1uf9_A TT1252 protein; P-loop, 99.7 7.6E-16 2.6E-20 111.2 12.5 165 6-192 5-195 (203)
67 3iij_A Coilin-interacting nucl 99.7 4.1E-15 1.4E-19 105.5 14.7 108 8-132 10-117 (180)
68 2grj_A Dephospho-COA kinase; T 99.6 1.9E-15 6.4E-20 108.3 11.9 150 9-191 12-187 (192)
69 1ltq_A Polynucleotide kinase; 99.6 6.5E-16 2.2E-20 118.2 9.9 165 9-179 2-172 (301)
70 2vp4_A Deoxynucleoside kinase; 99.6 1.1E-15 3.7E-20 112.8 10.7 79 108-192 143-226 (230)
71 1uj2_A Uridine-cytidine kinase 99.6 3.2E-16 1.1E-20 117.1 7.9 172 6-192 19-235 (252)
72 1kag_A SKI, shikimate kinase I 99.6 1.5E-15 5.1E-20 107.0 9.0 159 9-189 4-171 (173)
73 1q3t_A Cytidylate kinase; nucl 99.6 1.1E-14 3.8E-19 107.7 13.7 172 7-190 14-234 (236)
74 3nwj_A ATSK2; P loop, shikimat 99.6 6.1E-15 2.1E-19 109.8 12.1 169 10-194 49-240 (250)
75 4e22_A Cytidylate kinase; P-lo 99.6 4.1E-14 1.4E-18 105.7 16.7 174 9-192 27-246 (252)
76 2yvu_A Probable adenylyl-sulfa 99.6 4E-14 1.4E-18 100.9 13.4 160 7-192 11-185 (186)
77 1m7g_A Adenylylsulfate kinase; 99.6 1.2E-14 3.9E-19 105.8 10.6 161 8-190 24-202 (211)
78 2ocp_A DGK, deoxyguanosine kin 99.6 4.4E-15 1.5E-19 110.2 7.5 80 110-192 148-235 (241)
79 2qor_A Guanylate kinase; phosp 99.6 1.8E-14 6E-19 104.3 10.4 171 7-192 10-198 (204)
80 2h92_A Cytidylate kinase; ross 99.6 4.1E-14 1.4E-18 103.3 11.5 169 9-189 3-216 (219)
81 1qhx_A CPT, protein (chloramph 99.5 2.2E-13 7.5E-18 96.2 14.5 159 9-187 3-175 (178)
82 2pez_A Bifunctional 3'-phospho 99.5 4.9E-13 1.7E-17 94.6 14.3 113 8-132 4-125 (179)
83 1gtv_A TMK, thymidylate kinase 99.5 2.3E-15 7.8E-20 109.5 -0.1 168 10-186 1-209 (214)
84 3fdi_A Uncharacterized protein 99.5 6.9E-12 2.4E-16 90.4 17.8 169 9-190 6-198 (201)
85 3r20_A Cytidylate kinase; stru 99.5 3E-12 1E-16 94.1 16.1 40 8-47 8-47 (233)
86 3uie_A Adenylyl-sulfate kinase 99.4 1.7E-12 5.8E-17 93.6 12.3 157 8-191 24-195 (200)
87 3zvl_A Bifunctional polynucleo 99.4 2.2E-12 7.4E-17 102.9 12.5 122 7-154 256-382 (416)
88 1gvn_B Zeta; postsegregational 99.4 9.9E-12 3.4E-16 94.4 15.0 121 6-132 30-162 (287)
89 3hdt_A Putative kinase; struct 99.4 5.4E-11 1.9E-15 87.0 18.1 170 9-191 14-219 (223)
90 1x6v_B Bifunctional 3'-phospho 99.4 2.7E-11 9.2E-16 100.4 16.5 161 8-191 51-223 (630)
91 1p6x_A Thymidine kinase; P-loo 99.4 5.4E-12 1.9E-16 97.2 11.2 45 110-156 156-202 (334)
92 3tr0_A Guanylate kinase, GMP k 99.4 3.8E-12 1.3E-16 91.8 9.4 164 9-190 7-186 (205)
93 2p5t_B PEZT; postsegregational 99.3 1.3E-11 4.4E-16 92.2 11.4 120 6-132 29-157 (253)
94 3asz_A Uridine kinase; cytidin 99.3 4.9E-12 1.7E-16 91.7 8.8 36 8-43 5-42 (211)
95 2gks_A Bifunctional SAT/APS ki 99.3 3.5E-11 1.2E-15 98.8 14.4 162 8-190 371-540 (546)
96 2j41_A Guanylate kinase; GMP, 99.3 4.8E-12 1.7E-16 91.3 7.1 163 9-190 6-186 (207)
97 4gp7_A Metallophosphoesterase; 99.3 3.2E-10 1.1E-14 79.6 16.0 122 9-150 9-137 (171)
98 3fvq_A Fe(3+) IONS import ATP- 99.3 5.5E-12 1.9E-16 98.1 6.8 166 10-183 31-229 (359)
99 3tui_C Methionine import ATP-b 99.3 1.6E-12 5.5E-17 101.2 3.4 165 10-182 55-253 (366)
100 3rlf_A Maltose/maltodextrin im 99.3 2.1E-12 7.1E-17 101.2 3.9 166 10-183 30-224 (381)
101 1ex7_A Guanylate kinase; subst 99.3 1.8E-11 6.2E-16 86.9 8.4 163 11-189 3-183 (186)
102 1m8p_A Sulfate adenylyltransfe 99.3 4.5E-11 1.5E-15 98.7 11.9 164 7-190 394-566 (573)
103 1v43_A Sugar-binding transport 99.3 9.2E-12 3.1E-16 97.5 7.0 166 10-183 38-232 (372)
104 1of1_A Thymidine kinase; trans 99.2 1.3E-10 4.4E-15 90.6 13.0 48 110-157 198-245 (376)
105 1e2k_A Thymidine kinase; trans 99.2 1.2E-10 4E-15 89.7 11.8 47 110-156 153-199 (331)
106 2yyz_A Sugar ABC transporter, 99.2 3.4E-12 1.2E-16 99.5 2.7 166 10-183 30-224 (359)
107 2it1_A 362AA long hypothetical 99.2 1.6E-11 5.6E-16 95.7 6.0 166 10-183 30-224 (362)
108 3tau_A Guanylate kinase, GMP k 99.2 2.9E-11 9.9E-16 87.6 6.9 164 9-190 8-188 (208)
109 1z47_A CYSA, putative ABC-tran 99.2 1.9E-11 6.4E-16 95.1 6.2 166 10-183 42-236 (355)
110 2axn_A 6-phosphofructo-2-kinas 99.2 2.8E-10 9.6E-15 93.0 13.1 146 8-158 34-201 (520)
111 3ch4_B Pmkase, phosphomevalona 99.2 1E-09 3.5E-14 78.4 14.4 161 8-191 10-190 (202)
112 3a00_A Guanylate kinase, GMP k 99.2 3E-11 1E-15 86.0 6.4 162 10-189 2-183 (186)
113 1a7j_A Phosphoribulokinase; tr 99.2 2.1E-11 7.3E-16 92.7 5.8 38 8-45 4-46 (290)
114 4g1u_C Hemin import ATP-bindin 99.2 1.6E-11 5.4E-16 92.2 4.7 161 10-182 38-237 (266)
115 1osn_A Thymidine kinase, VZV-T 99.2 1.7E-10 5.8E-15 89.0 10.4 47 110-156 165-211 (341)
116 2olj_A Amino acid ABC transpor 99.2 8.9E-12 3E-16 93.4 3.1 109 10-122 51-187 (263)
117 2jeo_A Uridine-cytidine kinase 99.2 4.1E-10 1.4E-14 83.6 12.1 29 8-36 24-52 (245)
118 2onk_A Molybdate/tungstate ABC 99.2 1E-11 3.4E-16 91.9 3.1 109 10-122 25-154 (240)
119 1b0u_A Histidine permease; ABC 99.2 6.9E-12 2.4E-16 94.0 1.9 30 92-122 152-181 (262)
120 3d31_A Sulfate/molybdate ABC t 99.2 1.8E-11 6.2E-16 95.1 4.2 165 10-182 27-217 (348)
121 1rz3_A Hypothetical protein rb 99.1 6.3E-11 2.2E-15 85.4 6.6 27 7-33 20-46 (201)
122 3tif_A Uncharacterized ABC tra 99.1 5.5E-11 1.9E-15 87.7 5.9 110 10-123 32-174 (235)
123 1oxx_K GLCV, glucose, ABC tran 99.1 2.1E-11 7.1E-16 95.0 3.7 163 10-183 32-231 (353)
124 1g29_1 MALK, maltose transport 99.1 2.9E-11 9.9E-16 94.8 4.5 166 10-183 30-230 (372)
125 3gfo_A Cobalt import ATP-bindi 99.1 9.5E-11 3.2E-15 88.3 5.6 109 10-122 35-171 (275)
126 3czq_A Putative polyphosphate 99.1 1.2E-09 4E-14 82.7 11.4 157 8-188 85-273 (304)
127 3tqc_A Pantothenate kinase; bi 99.1 6.1E-10 2.1E-14 85.5 9.5 29 6-34 89-117 (321)
128 3nh6_A ATP-binding cassette SU 99.1 4E-12 1.4E-16 97.1 -3.1 109 10-122 81-218 (306)
129 2bdt_A BH3686; alpha-beta prot 99.1 4.3E-09 1.5E-13 74.8 12.8 111 10-133 3-123 (189)
130 2ihy_A ABC transporter, ATP-bi 99.1 5.4E-11 1.8E-15 89.9 3.0 110 10-123 48-190 (279)
131 2pcj_A ABC transporter, lipopr 99.0 2.1E-10 7.1E-15 84.0 5.6 111 10-124 31-170 (224)
132 1zp6_A Hypothetical protein AT 99.0 4.3E-09 1.5E-13 74.8 12.2 164 7-190 7-175 (191)
133 2ze6_A Isopentenyl transferase 99.0 1.2E-09 4.1E-14 81.4 9.6 35 10-44 2-36 (253)
134 1sgw_A Putative ABC transporte 99.0 3.2E-11 1.1E-15 87.7 0.9 109 10-124 36-163 (214)
135 1vpl_A ABC transporter, ATP-bi 99.0 1.5E-10 5.1E-15 86.4 4.1 109 10-122 42-174 (256)
136 2ff7_A Alpha-hemolysin translo 99.0 7.7E-11 2.6E-15 87.6 2.5 109 10-122 36-173 (247)
137 1ji0_A ABC transporter; ATP bi 99.0 9E-11 3.1E-15 86.9 2.8 109 10-122 33-167 (240)
138 1g6h_A High-affinity branched- 99.0 1.1E-10 3.7E-15 87.3 3.1 109 10-122 34-181 (257)
139 2nq2_C Hypothetical ABC transp 99.0 1.6E-11 5.5E-16 91.5 -1.5 109 10-122 32-156 (253)
140 2yz2_A Putative ABC transporte 99.0 1.1E-10 3.7E-15 87.7 2.6 109 10-122 34-166 (266)
141 2qi9_C Vitamin B12 import ATP- 99.0 1.8E-10 6.1E-15 85.6 2.4 108 10-122 27-161 (249)
142 3cr8_A Sulfate adenylyltranfer 99.0 4.7E-09 1.6E-13 86.2 10.9 164 8-191 368-540 (552)
143 3lnc_A Guanylate kinase, GMP k 99.0 8.1E-09 2.8E-13 75.8 11.0 24 10-33 28-52 (231)
144 3j16_B RLI1P; ribosome recycli 99.0 4.7E-10 1.6E-14 93.1 4.8 168 11-189 380-566 (608)
145 2pjz_A Hypothetical protein ST 99.0 5.9E-11 2E-15 88.9 -0.6 107 10-122 31-156 (263)
146 1bif_A 6-phosphofructo-2-kinas 98.9 2.9E-08 9.8E-13 80.3 14.9 145 7-156 37-203 (469)
147 3b5x_A Lipid A export ATP-bind 98.9 5E-10 1.7E-14 92.9 4.4 109 10-122 370-508 (582)
148 3c8u_A Fructokinase; YP_612366 98.9 8.6E-09 2.9E-13 74.5 10.2 28 7-34 20-47 (208)
149 2ixe_A Antigen peptide transpo 98.9 2.8E-10 9.6E-15 85.7 2.4 109 10-122 46-184 (271)
150 1mv5_A LMRA, multidrug resista 98.9 2.3E-10 7.9E-15 84.8 1.7 108 10-122 29-167 (243)
151 3gd7_A Fusion complex of cysti 98.9 1.9E-10 6.6E-15 90.6 0.6 109 10-124 48-185 (390)
152 2pze_A Cystic fibrosis transme 98.9 8.8E-10 3E-14 81.0 3.1 108 10-122 35-158 (229)
153 1sq5_A Pantothenate kinase; P- 98.9 3.6E-09 1.2E-13 81.1 6.4 28 7-34 78-105 (308)
154 2cbz_A Multidrug resistance-as 98.8 3.8E-10 1.3E-14 83.4 0.6 108 10-122 32-155 (237)
155 3j16_B RLI1P; ribosome recycli 98.8 1.3E-08 4.4E-13 84.6 8.8 31 91-122 219-249 (608)
156 2d2e_A SUFC protein; ABC-ATPas 98.8 1.8E-09 6.1E-14 80.3 3.3 28 94-122 144-171 (250)
157 3a8t_A Adenylate isopentenyltr 98.8 2.5E-09 8.7E-14 82.2 4.2 35 9-43 40-74 (339)
158 2bbs_A Cystic fibrosis transme 98.8 3E-09 1E-13 80.7 3.6 107 10-122 65-187 (290)
159 1kgd_A CASK, peripheral plasma 98.8 4.3E-09 1.5E-13 74.4 4.1 24 10-33 6-29 (180)
160 2ghi_A Transport protein; mult 98.8 1.2E-09 4.1E-14 81.7 1.1 108 10-122 47-183 (260)
161 1s96_A Guanylate kinase, GMP k 98.8 1.3E-07 4.6E-12 68.8 11.9 162 9-189 16-196 (219)
162 1lvg_A Guanylate kinase, GMP k 98.8 1.1E-07 3.9E-12 68.1 11.4 71 111-190 116-187 (198)
163 3ney_A 55 kDa erythrocyte memb 98.8 5.3E-08 1.8E-12 69.6 9.3 26 9-34 19-44 (197)
164 2zu0_C Probable ATP-dependent 98.8 4.2E-09 1.4E-13 79.1 3.6 29 93-122 164-192 (267)
165 3ozx_A RNAse L inhibitor; ATP 98.7 1.5E-09 5E-14 89.1 0.8 106 10-122 295-413 (538)
166 2yl4_A ATP-binding cassette SU 98.7 9E-10 3.1E-14 91.6 -0.4 109 10-122 371-511 (595)
167 3qf4_B Uncharacterized ABC tra 98.7 3.2E-09 1.1E-13 88.3 2.7 105 10-122 382-519 (598)
168 4a82_A Cystic fibrosis transme 98.7 1.1E-09 3.6E-14 90.9 -0.4 109 10-122 368-505 (578)
169 3qf4_A ABC transporter, ATP-bi 98.7 4.1E-09 1.4E-13 87.5 3.0 109 10-122 370-507 (587)
170 3b60_A Lipid A export ATP-bind 98.7 2.2E-09 7.7E-14 89.0 1.4 109 10-122 370-508 (582)
171 3ozx_A RNAse L inhibitor; ATP 98.7 1.6E-08 5.5E-13 82.9 6.4 31 91-122 136-166 (538)
172 3czp_A Putative polyphosphate 98.7 4.8E-08 1.6E-12 79.1 8.9 163 7-192 41-237 (500)
173 4f4c_A Multidrug resistance pr 98.7 1.5E-08 5E-13 91.1 6.3 109 10-122 445-582 (1321)
174 4f4c_A Multidrug resistance pr 98.7 3.5E-09 1.2E-13 95.1 2.0 112 10-122 1106-1245(1321)
175 3czp_A Putative polyphosphate 98.7 5.5E-08 1.9E-12 78.7 8.2 162 7-192 298-494 (500)
176 3bk7_A ABC transporter ATP-bin 98.7 3.5E-09 1.2E-13 88.0 1.1 109 10-122 383-499 (607)
177 1yqt_A RNAse L inhibitor; ATP- 98.6 2.5E-08 8.4E-13 82.0 4.8 31 91-122 156-186 (538)
178 3bk7_A ABC transporter ATP-bin 98.6 2.3E-08 8E-13 83.1 4.3 31 91-122 226-256 (607)
179 3aez_A Pantothenate kinase; tr 98.6 9.8E-09 3.4E-13 78.7 1.6 28 6-33 87-114 (312)
180 1yqt_A RNAse L inhibitor; ATP- 98.6 5.1E-09 1.7E-13 86.0 -0.8 106 10-122 313-429 (538)
181 1dek_A Deoxynucleoside monopho 98.5 1.6E-07 5.6E-12 69.2 5.3 39 9-47 1-39 (241)
182 3crm_A TRNA delta(2)-isopenten 98.5 7.8E-08 2.7E-12 73.7 3.6 35 9-43 5-39 (323)
183 3d3q_A TRNA delta(2)-isopenten 98.5 9.9E-08 3.4E-12 73.6 4.2 35 9-43 7-41 (340)
184 3foz_A TRNA delta(2)-isopenten 98.5 1.3E-07 4.4E-12 71.9 4.3 37 6-42 7-43 (316)
185 3rhf_A Putative polyphosphate 98.4 6.3E-06 2.1E-10 61.7 12.8 146 7-176 73-250 (289)
186 3g5u_A MCG1178, multidrug resi 98.4 6.7E-08 2.3E-12 86.7 2.4 109 10-122 417-554 (1284)
187 3b9q_A Chloroplast SRP recepto 98.4 6.9E-07 2.3E-11 68.2 7.0 26 8-33 99-124 (302)
188 2og2_A Putative signal recogni 98.4 1.1E-06 3.9E-11 68.4 8.2 26 8-33 156-181 (359)
189 1ye8_A Protein THEP1, hypothet 98.3 4.4E-07 1.5E-11 63.9 3.7 26 10-35 1-26 (178)
190 3exa_A TRNA delta(2)-isopenten 98.3 4.5E-07 1.5E-11 69.1 3.8 35 9-43 3-37 (322)
191 1odf_A YGR205W, hypothetical 3 98.3 7.5E-07 2.6E-11 67.5 4.8 30 5-34 27-56 (290)
192 3g5u_A MCG1178, multidrug resi 98.2 4.3E-07 1.5E-11 81.6 3.1 109 10-122 1060-1199(1284)
193 2iw3_A Elongation factor 3A; a 98.2 6.8E-07 2.3E-11 77.6 3.6 31 91-122 546-576 (986)
194 1vma_A Cell division protein F 98.2 5.2E-06 1.8E-10 63.4 7.5 27 7-33 102-128 (306)
195 3e70_C DPA, signal recognition 98.1 5.1E-06 1.8E-10 64.0 6.8 27 7-33 127-153 (328)
196 3eph_A TRNA isopentenyltransfe 98.1 1.7E-06 5.8E-11 68.1 4.0 34 9-42 2-35 (409)
197 3b85_A Phosphate starvation-in 98.1 4.3E-07 1.5E-11 65.6 0.4 27 97-124 108-134 (208)
198 3t15_A Ribulose bisphosphate c 98.1 2.6E-06 8.7E-11 64.7 4.6 34 6-39 33-66 (293)
199 1znw_A Guanylate kinase, GMP k 98.1 1.7E-06 6E-11 62.2 3.5 24 10-33 21-44 (207)
200 1g8f_A Sulfate adenylyltransfe 98.1 1.8E-06 6.1E-11 70.2 3.8 35 8-42 394-435 (511)
201 1z6g_A Guanylate kinase; struc 98.1 1.9E-06 6.4E-11 62.6 3.2 25 9-33 23-47 (218)
202 3ux8_A Excinuclease ABC, A sub 98.1 2.6E-06 8.9E-11 71.8 4.1 31 91-122 200-232 (670)
203 3sop_A Neuronal-specific septi 98.0 1.4E-06 4.6E-11 65.5 2.0 32 10-44 3-34 (270)
204 1htw_A HI0065; nucleotide-bind 98.0 3.4E-06 1.1E-10 58.2 3.6 24 10-33 34-57 (158)
205 1xjc_A MOBB protein homolog; s 98.0 5.1E-06 1.7E-10 57.8 3.8 26 8-33 3-28 (169)
206 1np6_A Molybdopterin-guanine d 97.9 6.6E-06 2.3E-10 57.6 3.9 26 8-33 5-30 (174)
207 1rj9_A FTSY, signal recognitio 97.9 7.3E-06 2.5E-10 62.5 4.3 26 8-33 101-126 (304)
208 2eyu_A Twitching motility prot 97.9 6.1E-06 2.1E-10 61.6 3.8 24 10-33 26-49 (261)
209 2x8a_A Nuclear valosin-contain 97.9 6.4E-06 2.2E-10 61.9 3.8 27 12-38 47-73 (274)
210 2i3b_A HCR-ntpase, human cance 97.9 5.9E-06 2E-10 58.7 3.3 23 11-33 3-25 (189)
211 1lv7_A FTSH; alpha/beta domain 97.9 9.5E-06 3.2E-10 60.2 4.5 30 9-38 45-74 (257)
212 3ux8_A Excinuclease ABC, A sub 97.9 8.5E-06 2.9E-10 68.7 4.7 32 91-122 541-574 (670)
213 2f1r_A Molybdopterin-guanine d 97.9 2.8E-06 9.7E-11 59.3 1.5 25 9-33 2-26 (171)
214 3ec2_A DNA replication protein 97.9 6.5E-06 2.2E-10 57.7 3.3 25 9-33 38-62 (180)
215 4b4t_M 26S protease regulatory 97.9 1.1E-05 3.9E-10 64.2 4.6 33 7-39 213-245 (434)
216 2ehv_A Hypothetical protein PH 97.9 7.2E-06 2.5E-10 60.3 3.3 21 10-30 31-51 (251)
217 4b4t_K 26S protease regulatory 97.9 1.2E-05 4.2E-10 63.9 4.7 33 7-39 204-236 (428)
218 2qmh_A HPR kinase/phosphorylas 97.9 9.4E-06 3.2E-10 57.7 3.5 31 10-41 35-65 (205)
219 2v9p_A Replication protein E1; 97.9 9.3E-06 3.2E-10 61.8 3.7 24 10-33 127-150 (305)
220 4b4t_L 26S protease subunit RP 97.8 1.4E-05 4.7E-10 63.8 4.6 33 7-39 213-245 (437)
221 2qz4_A Paraplegin; AAA+, SPG7, 97.8 1.5E-05 5.1E-10 59.1 4.4 32 8-39 38-69 (262)
222 1svm_A Large T antigen; AAA+ f 97.8 1.5E-05 5.3E-10 62.5 4.7 32 8-39 168-199 (377)
223 3cf0_A Transitional endoplasmi 97.8 1.3E-05 4.5E-10 61.0 4.2 37 8-44 48-86 (301)
224 4a74_A DNA repair and recombin 97.8 8.9E-06 3E-10 59.0 3.1 23 10-32 26-48 (231)
225 1in4_A RUVB, holliday junction 97.8 1.5E-05 5E-10 61.6 4.4 29 9-37 51-79 (334)
226 4b4t_J 26S protease regulatory 97.8 1.4E-05 4.9E-10 62.9 4.1 33 7-39 180-212 (405)
227 2kjq_A DNAA-related protein; s 97.8 1.2E-05 4.1E-10 54.8 3.3 24 10-33 37-60 (149)
228 3b9p_A CG5977-PA, isoform A; A 97.8 1.6E-05 5.5E-10 60.1 4.2 30 9-38 54-83 (297)
229 1ixz_A ATP-dependent metallopr 97.8 1.5E-05 5E-10 59.0 3.8 28 11-38 51-78 (254)
230 3h4m_A Proteasome-activating n 97.8 2E-05 7E-10 59.2 4.4 32 8-39 50-81 (285)
231 1kjw_A Postsynaptic density pr 97.8 0.00016 5.5E-09 54.8 9.1 160 9-191 105-282 (295)
232 2ga8_A Hypothetical 39.9 kDa p 97.8 1.2E-05 4.1E-10 62.3 2.9 29 9-37 24-52 (359)
233 2yhs_A FTSY, cell division pro 97.7 2.1E-05 7.3E-10 63.5 4.3 27 7-33 291-317 (503)
234 1u0l_A Probable GTPase ENGC; p 97.7 1.3E-05 4.3E-10 61.1 2.9 33 10-45 170-202 (301)
235 1lw7_A Transcriptional regulat 97.7 7.9E-06 2.7E-10 63.9 1.7 25 10-34 171-195 (365)
236 1d2n_A N-ethylmaleimide-sensit 97.7 3.4E-05 1.2E-09 57.7 5.1 33 7-39 62-94 (272)
237 3hws_A ATP-dependent CLP prote 97.7 2.1E-05 7.4E-10 61.3 4.0 32 9-40 51-82 (363)
238 4b4t_H 26S protease regulatory 97.7 2.1E-05 7.1E-10 63.0 3.8 33 7-39 241-273 (467)
239 3euj_A Chromosome partition pr 97.7 7.7E-06 2.6E-10 66.0 1.3 31 10-43 30-60 (483)
240 1oix_A RAS-related protein RAB 97.7 2.1E-05 7.1E-10 55.6 3.4 24 9-32 29-52 (191)
241 3jvv_A Twitching mobility prot 97.7 2.2E-05 7.6E-10 61.1 3.8 23 11-33 125-147 (356)
242 1g41_A Heat shock protein HSLU 97.7 2.2E-05 7.5E-10 62.7 3.7 33 9-41 50-82 (444)
243 1iy2_A ATP-dependent metallopr 97.7 2.4E-05 8.1E-10 58.8 3.8 28 11-38 75-102 (278)
244 4b4t_I 26S protease regulatory 97.7 3.3E-05 1.1E-09 61.3 4.6 33 7-39 214-246 (437)
245 1tq4_A IIGP1, interferon-induc 97.7 1.4E-05 4.9E-10 63.4 2.5 30 9-41 69-98 (413)
246 3eie_A Vacuolar protein sortin 97.7 4.3E-05 1.5E-09 58.7 4.8 32 9-40 51-82 (322)
247 3kta_A Chromosome segregation 97.7 2.5E-05 8.6E-10 54.7 3.1 23 11-33 28-50 (182)
248 1jbk_A CLPB protein; beta barr 97.7 3.9E-05 1.3E-09 53.6 4.1 25 9-33 43-67 (195)
249 2npi_A Protein CLP1; CLP1-PCF1 97.7 1.2E-05 4.3E-10 64.6 1.6 23 10-32 139-161 (460)
250 2rcn_A Probable GTPase ENGC; Y 97.7 2.5E-05 8.7E-10 60.7 3.3 32 10-44 216-248 (358)
251 1nij_A Hypothetical protein YJ 97.6 2.6E-05 8.8E-10 59.9 3.1 24 9-32 4-27 (318)
252 2ewv_A Twitching motility prot 97.6 3.9E-05 1.3E-09 60.1 4.2 25 9-33 136-160 (372)
253 2w0m_A SSO2452; RECA, SSPF, un 97.6 3.9E-05 1.3E-09 55.6 3.7 24 10-33 24-47 (235)
254 1ofh_A ATP-dependent HSL prote 97.6 4.2E-05 1.4E-09 58.0 4.0 30 9-38 50-79 (310)
255 3syl_A Protein CBBX; photosynt 97.6 4.9E-05 1.7E-09 57.7 4.3 26 8-33 66-91 (309)
256 2gza_A Type IV secretion syste 97.6 2.5E-05 8.4E-10 61.0 2.7 24 10-33 176-199 (361)
257 1xwi_A SKD1 protein; VPS4B, AA 97.6 4.6E-05 1.6E-09 58.5 4.1 30 9-38 45-75 (322)
258 2px0_A Flagellar biosynthesis 97.6 4.1E-05 1.4E-09 58.1 3.8 26 8-33 104-129 (296)
259 2r62_A Cell division protease 97.6 1.9E-05 6.6E-10 58.8 2.0 30 10-39 45-74 (268)
260 1um8_A ATP-dependent CLP prote 97.6 4.4E-05 1.5E-09 59.8 4.0 31 9-39 72-102 (376)
261 3bc1_A RAS-related protein RAB 97.6 4.4E-05 1.5E-09 53.5 3.6 31 1-31 3-33 (195)
262 1p9r_A General secretion pathw 97.6 4.4E-05 1.5E-09 60.7 3.9 24 10-33 168-191 (418)
263 3bos_A Putative DNA replicatio 97.6 5E-05 1.7E-09 55.2 4.0 26 9-34 52-77 (242)
264 2qm8_A GTPase/ATPase; G protei 97.6 5.7E-05 2E-09 58.4 4.3 26 8-33 54-79 (337)
265 2w58_A DNAI, primosome compone 97.6 5.3E-05 1.8E-09 53.9 3.8 24 10-33 55-78 (202)
266 1nrj_B SR-beta, signal recogni 97.6 5.3E-05 1.8E-09 54.4 3.8 27 6-32 9-35 (218)
267 2pt7_A CAG-ALFA; ATPase, prote 97.6 1.9E-05 6.4E-10 61.0 1.4 80 10-123 172-251 (330)
268 2qp9_X Vacuolar protein sortin 97.6 5.4E-05 1.9E-09 58.9 4.0 32 9-40 84-115 (355)
269 2f9l_A RAB11B, member RAS onco 97.6 5.1E-05 1.8E-09 53.8 3.5 24 9-32 5-28 (199)
270 2p65_A Hypothetical protein PF 97.5 4.5E-05 1.6E-09 53.1 3.2 25 9-33 43-67 (187)
271 3d8b_A Fidgetin-like protein 1 97.5 6.1E-05 2.1E-09 58.7 4.1 32 8-39 116-147 (357)
272 2fn4_A P23, RAS-related protei 97.5 6.7E-05 2.3E-09 51.9 3.9 27 6-32 6-32 (181)
273 1tf7_A KAIC; homohexamer, hexa 97.5 0.00018 6.2E-09 58.9 7.0 94 10-127 282-385 (525)
274 2ce7_A Cell division protein F 97.5 8.6E-05 2.9E-09 60.0 4.9 32 8-39 48-79 (476)
275 1njg_A DNA polymerase III subu 97.5 7.4E-05 2.5E-09 54.1 4.2 26 9-34 45-70 (250)
276 2qag_B Septin-6, protein NEDD5 97.5 5.4E-05 1.8E-09 60.2 3.5 20 11-30 44-63 (427)
277 1sxj_A Activator 1 95 kDa subu 97.5 7.7E-05 2.6E-09 61.0 4.5 31 9-39 77-107 (516)
278 2www_A Methylmalonic aciduria 97.5 7.8E-05 2.7E-09 57.9 4.3 25 9-33 74-98 (349)
279 1tue_A Replication protein E1; 97.5 6.9E-05 2.4E-09 53.6 3.5 27 10-36 59-85 (212)
280 3pfi_A Holliday junction ATP-d 97.5 8.8E-05 3E-09 57.1 4.4 31 9-39 55-85 (338)
281 2cvh_A DNA repair and recombin 97.5 6.1E-05 2.1E-09 54.2 3.3 22 10-31 21-42 (220)
282 1ky3_A GTP-binding protein YPT 97.5 6.9E-05 2.4E-09 51.9 3.5 27 6-32 5-31 (182)
283 1zu4_A FTSY; GTPase, signal re 97.5 8.8E-05 3E-09 56.9 4.3 27 7-33 103-129 (320)
284 2wji_A Ferrous iron transport 97.5 7.4E-05 2.5E-09 51.3 3.5 22 9-30 3-24 (165)
285 3kl4_A SRP54, signal recogniti 97.5 8E-05 2.7E-09 59.4 4.0 26 8-33 96-121 (433)
286 1cr0_A DNA primase/helicase; R 97.5 6.9E-05 2.4E-09 56.7 3.6 24 10-33 36-59 (296)
287 3tqf_A HPR(Ser) kinase; transf 97.5 7.4E-05 2.5E-09 51.9 3.3 30 10-40 17-46 (181)
288 3pqc_A Probable GTP-binding pr 97.5 9.5E-05 3.3E-09 51.8 4.0 26 7-32 21-46 (195)
289 1f2t_A RAD50 ABC-ATPase; DNA d 97.5 8.5E-05 2.9E-09 50.5 3.6 22 10-31 24-45 (149)
290 1n0w_A DNA repair protein RAD5 97.5 6.7E-05 2.3E-09 54.8 3.3 23 10-32 25-47 (243)
291 1t9h_A YLOQ, probable GTPase E 97.5 1.5E-05 5.1E-10 60.8 -0.3 32 10-44 174-205 (307)
292 4fcw_A Chaperone protein CLPB; 97.5 0.00012 4E-09 55.6 4.6 24 10-33 48-71 (311)
293 1qhl_A Protein (cell division 97.5 2.5E-06 8.7E-11 62.3 -4.5 31 11-44 29-59 (227)
294 2r2a_A Uncharacterized protein 97.5 8E-05 2.8E-09 53.2 3.4 23 8-30 4-26 (199)
295 1sxj_E Activator 1 40 kDa subu 97.4 8.5E-05 2.9E-09 57.5 3.7 25 8-33 36-60 (354)
296 1svi_A GTP-binding protein YSX 97.4 9.5E-05 3.2E-09 52.0 3.6 24 7-30 21-44 (195)
297 3szr_A Interferon-induced GTP- 97.4 4.1E-05 1.4E-09 63.8 1.9 31 11-44 47-78 (608)
298 2wjg_A FEOB, ferrous iron tran 97.4 0.00012 4.1E-09 51.2 4.1 24 8-31 6-29 (188)
299 1z2a_A RAS-related protein RAB 97.4 9.6E-05 3.3E-09 50.5 3.5 25 8-32 4-28 (168)
300 2c9o_A RUVB-like 1; hexameric 97.4 0.00013 4.5E-09 58.7 4.7 30 9-38 63-94 (456)
301 1l8q_A Chromosomal replication 97.4 0.00011 3.7E-09 56.3 4.0 35 9-43 37-76 (324)
302 3n70_A Transport activator; si 97.4 9.3E-05 3.2E-09 49.9 3.3 24 10-33 25-48 (145)
303 2yv5_A YJEQ protein; hydrolase 97.4 8.5E-05 2.9E-09 56.6 3.3 23 10-33 166-188 (302)
304 3dm5_A SRP54, signal recogniti 97.4 0.00013 4.4E-09 58.3 4.3 26 8-33 99-124 (443)
305 2atv_A RERG, RAS-like estrogen 97.4 0.00013 4.4E-09 51.6 3.9 26 7-32 26-51 (196)
306 2gj8_A MNME, tRNA modification 97.4 0.00011 3.7E-09 51.0 3.4 23 9-31 4-26 (172)
307 3cf2_A TER ATPase, transitiona 97.4 0.00011 3.7E-09 62.9 4.0 34 7-40 236-269 (806)
308 3vfd_A Spastin; ATPase, microt 97.4 0.00013 4.6E-09 57.4 4.3 31 9-39 148-178 (389)
309 1c9k_A COBU, adenosylcobinamid 97.4 7.4E-05 2.5E-09 52.4 2.5 23 12-35 2-24 (180)
310 1pui_A ENGB, probable GTP-bind 97.4 5.5E-05 1.9E-09 54.0 1.9 23 8-30 25-47 (210)
311 3m6a_A ATP-dependent protease 97.4 0.00014 4.7E-09 59.9 4.5 29 9-37 108-136 (543)
312 2obl_A ESCN; ATPase, hydrolase 97.4 5.1E-05 1.7E-09 58.9 1.8 24 10-33 72-95 (347)
313 2dpy_A FLII, flagellum-specifi 97.4 5E-05 1.7E-09 60.8 1.8 24 10-33 158-181 (438)
314 3tw8_B RAS-related protein RAB 97.4 0.00011 3.7E-09 50.9 3.3 24 7-30 7-30 (181)
315 2chg_A Replication factor C sm 97.4 0.00012 4.1E-09 52.3 3.5 23 11-33 40-62 (226)
316 2dhr_A FTSH; AAA+ protein, hex 97.4 0.00017 5.8E-09 58.6 4.7 30 9-38 64-93 (499)
317 2iw3_A Elongation factor 3A; a 97.4 2.5E-05 8.5E-10 68.0 -0.2 32 91-123 899-930 (986)
318 2zan_A Vacuolar protein sortin 97.4 0.00014 4.7E-09 58.4 4.1 36 9-44 167-205 (444)
319 1nlf_A Regulatory protein REPA 97.4 0.0001 3.5E-09 55.3 3.1 24 10-33 31-54 (279)
320 1vg8_A RAS-related protein RAB 97.4 0.00013 4.4E-09 51.8 3.5 27 6-32 5-31 (207)
321 2wsm_A Hydrogenase expression/ 97.3 0.00016 5.6E-09 52.0 4.0 26 8-33 29-54 (221)
322 2dyk_A GTP-binding protein; GT 97.3 0.00016 5.6E-09 49.0 3.8 23 10-32 2-24 (161)
323 3lxx_A GTPase IMAP family memb 97.3 0.00014 4.7E-09 53.3 3.6 23 8-30 28-50 (239)
324 1sxj_C Activator 1 40 kDa subu 97.3 0.00016 5.3E-09 55.9 4.0 22 12-33 49-70 (340)
325 3p32_A Probable GTPase RV1496/ 97.3 0.00017 6E-09 56.1 4.3 27 7-33 77-103 (355)
326 1upt_A ARL1, ADP-ribosylation 97.3 0.0002 6.7E-09 49.1 4.1 25 7-31 5-29 (171)
327 2qby_A CDC6 homolog 1, cell di 97.3 0.00016 5.6E-09 56.2 4.1 26 8-33 44-69 (386)
328 1wms_A RAB-9, RAB9, RAS-relate 97.3 0.00013 4.4E-09 50.4 3.1 24 8-31 6-29 (177)
329 2y8e_A RAB-protein 6, GH09086P 97.3 0.00014 4.8E-09 50.2 3.3 22 10-31 15-36 (179)
330 3con_A GTPase NRAS; structural 97.3 0.00014 4.7E-09 51.0 3.3 24 9-32 21-44 (190)
331 4dsu_A GTPase KRAS, isoform 2B 97.3 0.00014 4.8E-09 50.7 3.3 25 8-32 3-27 (189)
332 2zej_A Dardarin, leucine-rich 97.3 0.00013 4.5E-09 51.0 3.1 22 10-31 3-24 (184)
333 3pvs_A Replication-associated 97.3 0.00017 5.7E-09 57.9 4.0 30 10-39 51-80 (447)
334 2qnr_A Septin-2, protein NEDD5 97.3 0.00013 4.4E-09 55.5 3.2 22 9-30 18-39 (301)
335 2oap_1 GSPE-2, type II secreti 97.3 8.5E-05 2.9E-09 60.6 2.3 24 10-33 261-284 (511)
336 2hf9_A Probable hydrogenase ni 97.3 0.00021 7E-09 51.6 4.1 26 8-33 37-62 (226)
337 1hqc_A RUVB; extended AAA-ATPa 97.3 0.00016 5.4E-09 55.2 3.6 29 10-38 39-67 (324)
338 3uk6_A RUVB-like 2; hexameric 97.3 0.00016 5.5E-09 56.2 3.7 26 10-35 71-96 (368)
339 2atx_A Small GTP binding prote 97.3 0.00013 4.5E-09 51.3 3.0 25 8-32 17-41 (194)
340 1kao_A RAP2A; GTP-binding prot 97.3 0.00017 5.9E-09 49.0 3.5 24 9-32 3-26 (167)
341 2ged_A SR-beta, signal recogni 97.3 0.00018 6.1E-09 50.5 3.6 26 7-32 46-71 (193)
342 2ce2_X GTPase HRAS; signaling 97.3 0.00018 6.1E-09 48.8 3.5 24 9-32 3-26 (166)
343 2erx_A GTP-binding protein DI- 97.3 0.00018 6.2E-09 49.2 3.5 24 8-31 2-25 (172)
344 2nzj_A GTP-binding protein REM 97.3 0.00019 6.6E-09 49.3 3.6 23 8-30 3-25 (175)
345 2qag_C Septin-7; cell cycle, c 97.3 0.00014 4.7E-09 57.9 3.2 21 10-30 32-52 (418)
346 2lkc_A Translation initiation 97.3 0.00024 8.4E-09 49.0 4.1 25 7-31 6-30 (178)
347 1fzq_A ADP-ribosylation factor 97.3 0.0002 6.8E-09 50.0 3.6 25 7-31 14-38 (181)
348 2qby_B CDC6 homolog 3, cell di 97.3 0.00025 8.5E-09 55.4 4.6 26 8-33 44-69 (384)
349 1pzn_A RAD51, DNA repair and r 97.3 0.00014 4.9E-09 56.5 3.1 24 10-33 132-155 (349)
350 1u8z_A RAS-related protein RAL 97.3 0.00019 6.6E-09 48.8 3.5 24 9-32 4-27 (168)
351 2bme_A RAB4A, RAS-related prot 97.3 0.00019 6.6E-09 49.9 3.5 26 7-32 8-33 (186)
352 1ypw_A Transitional endoplasmi 97.3 0.00015 5.2E-09 62.3 3.5 32 8-39 237-268 (806)
353 3q85_A GTP-binding protein REM 97.3 0.0002 6.9E-09 49.0 3.5 22 9-30 2-23 (169)
354 1ls1_A Signal recognition part 97.3 0.00025 8.4E-09 53.8 4.2 26 8-33 97-122 (295)
355 2orw_A Thymidine kinase; TMTK, 97.3 0.00022 7.6E-09 50.2 3.7 24 10-33 4-27 (184)
356 2v1u_A Cell division control p 97.2 0.00018 6.1E-09 56.1 3.5 26 8-33 43-68 (387)
357 3u61_B DNA polymerase accessor 97.2 0.00019 6.5E-09 54.9 3.6 32 8-39 47-78 (324)
358 2oil_A CATX-8, RAS-related pro 97.2 0.00023 7.9E-09 50.0 3.8 25 8-32 24-48 (193)
359 3hu3_A Transitional endoplasmi 97.2 0.00024 8.3E-09 57.6 4.4 32 8-39 237-268 (489)
360 2hxs_A RAB-26, RAS-related pro 97.2 0.00026 8.8E-09 48.9 3.9 24 8-31 5-28 (178)
361 2dr3_A UPF0273 protein PH0284; 97.2 0.0002 7E-09 52.3 3.5 23 10-32 24-46 (247)
362 3cbq_A GTP-binding protein REM 97.2 0.00016 5.4E-09 51.2 2.8 23 8-30 22-44 (195)
363 1c1y_A RAS-related protein RAP 97.2 0.00022 7.7E-09 48.5 3.5 23 9-31 3-25 (167)
364 3clv_A RAB5 protein, putative; 97.2 0.00033 1.1E-08 49.3 4.5 25 8-32 6-30 (208)
365 2gf9_A RAS-related protein RAB 97.2 0.00027 9.2E-09 49.5 3.9 25 8-32 21-45 (189)
366 1moz_A ARL1, ADP-ribosylation 97.2 0.00016 5.5E-09 50.2 2.7 24 7-30 16-39 (183)
367 1fnn_A CDC6P, cell division co 97.2 0.00031 1.1E-08 54.8 4.7 23 11-33 46-68 (389)
368 3t1o_A Gliding protein MGLA; G 97.2 0.00015 5.2E-09 50.9 2.6 26 8-33 13-38 (198)
369 2gf0_A GTP-binding protein DI- 97.2 0.00028 9.7E-09 49.6 4.0 25 7-31 6-30 (199)
370 3qf7_A RAD50; ABC-ATPase, ATPa 97.2 0.00019 6.5E-09 56.1 3.3 29 94-123 280-314 (365)
371 1z08_A RAS-related protein RAB 97.2 0.00023 7.8E-09 48.7 3.3 25 8-32 5-29 (170)
372 3ihw_A Centg3; RAS, centaurin, 97.2 0.00032 1.1E-08 49.1 4.1 24 8-31 19-42 (184)
373 2p67_A LAO/AO transport system 97.2 0.00028 9.6E-09 54.6 4.1 27 7-33 54-80 (341)
374 3qks_A DNA double-strand break 97.2 0.00025 8.7E-09 50.7 3.6 25 9-33 23-47 (203)
375 2a5j_A RAS-related protein RAB 97.2 0.00034 1.2E-08 49.1 4.2 24 9-32 21-44 (191)
376 2bov_A RAla, RAS-related prote 97.2 0.00029 1E-08 49.8 3.8 25 8-32 13-37 (206)
377 2v3c_C SRP54, signal recogniti 97.2 0.00021 7.1E-09 57.1 3.3 26 8-33 98-123 (432)
378 1sxj_D Activator 1 41 kDa subu 97.2 0.00024 8.2E-09 54.8 3.5 23 12-34 61-83 (353)
379 1g16_A RAS-related protein SEC 97.2 0.00026 8.8E-09 48.4 3.3 23 9-31 3-25 (170)
380 3q72_A GTP-binding protein RAD 97.2 0.00024 8.1E-09 48.4 3.1 22 9-30 2-23 (166)
381 1gwn_A RHO-related GTP-binding 97.2 0.00027 9.2E-09 50.5 3.5 25 8-32 27-51 (205)
382 2r44_A Uncharacterized protein 97.2 0.00018 6.3E-09 55.2 2.8 27 11-37 48-74 (331)
383 3oes_A GTPase rhebl1; small GT 97.2 0.00027 9.4E-09 50.1 3.5 25 8-32 23-47 (201)
384 2a9k_A RAS-related protein RAL 97.2 0.00028 9.6E-09 49.0 3.5 24 9-32 18-41 (187)
385 1ek0_A Protein (GTP-binding pr 97.2 0.00027 9.4E-09 48.2 3.4 24 9-32 3-26 (170)
386 3kkq_A RAS-related protein M-R 97.2 0.00035 1.2E-08 48.5 3.9 25 8-32 17-41 (183)
387 2bcg_Y Protein YP2, GTP-bindin 97.2 0.0003 1E-08 50.0 3.6 25 7-31 6-30 (206)
388 3k53_A Ferrous iron transport 97.2 0.00027 9.1E-09 52.8 3.5 22 9-30 3-24 (271)
389 1m7b_A RND3/RHOE small GTP-bin 97.1 0.0003 1E-08 49.1 3.5 26 7-32 5-30 (184)
390 1yrb_A ATP(GTP)binding protein 97.1 0.00052 1.8E-08 50.7 5.0 30 4-33 9-38 (262)
391 2efe_B Small GTP-binding prote 97.1 0.00028 9.7E-09 48.8 3.3 25 8-32 11-35 (181)
392 2z4s_A Chromosomal replication 97.1 0.00034 1.2E-08 56.0 4.1 25 9-33 130-154 (440)
393 2p5s_A RAS and EF-hand domain 97.1 0.00035 1.2E-08 49.4 3.8 25 7-31 26-50 (199)
394 3t5g_A GTP-binding protein RHE 97.1 0.00024 8.3E-09 49.2 2.9 24 8-31 5-28 (181)
395 1z0f_A RAB14, member RAS oncog 97.1 0.00035 1.2E-08 48.1 3.7 25 8-32 14-38 (179)
396 1r2q_A RAS-related protein RAB 97.1 0.00022 7.4E-09 48.7 2.5 24 8-31 5-28 (170)
397 3bwd_D RAC-like GTP-binding pr 97.1 0.00033 1.1E-08 48.5 3.5 26 7-32 6-31 (182)
398 2j37_W Signal recognition part 97.1 0.00036 1.2E-08 56.7 4.1 27 7-33 99-125 (504)
399 2b6h_A ADP-ribosylation factor 97.1 0.00037 1.3E-08 49.1 3.8 24 7-30 27-50 (192)
400 3tkl_A RAS-related protein RAB 97.1 0.00035 1.2E-08 49.0 3.6 25 8-32 15-39 (196)
401 1j8m_F SRP54, signal recogniti 97.1 0.00034 1.2E-08 53.1 3.7 25 9-33 98-122 (297)
402 2g6b_A RAS-related protein RAB 97.1 0.00039 1.3E-08 48.0 3.8 26 7-32 8-33 (180)
403 1jr3_A DNA polymerase III subu 97.1 0.00041 1.4E-08 53.9 4.3 27 9-35 38-64 (373)
404 1z0j_A RAB-22, RAS-related pro 97.1 0.00039 1.3E-08 47.5 3.7 24 9-32 6-29 (170)
405 3te6_A Regulatory protein SIR3 97.1 0.00024 8.2E-09 54.4 2.8 26 8-33 44-69 (318)
406 2ew1_A RAS-related protein RAB 97.1 0.00036 1.2E-08 49.7 3.5 24 9-32 26-49 (201)
407 1z06_A RAS-related protein RAB 97.1 0.00036 1.2E-08 48.9 3.5 24 8-31 19-42 (189)
408 4bas_A ADP-ribosylation factor 97.1 0.00034 1.2E-08 49.2 3.4 24 7-30 15-38 (199)
409 2xtp_A GTPase IMAP family memb 97.1 0.00036 1.2E-08 51.6 3.6 24 8-31 21-44 (260)
410 2fu5_C RAS-related protein RAB 97.1 0.00021 7.2E-09 49.6 2.2 24 8-31 7-30 (183)
411 3tvt_A Disks large 1 tumor sup 97.1 0.0026 9E-08 48.0 8.3 160 8-191 99-277 (292)
412 2ffh_A Protein (FFH); SRP54, s 97.1 0.00044 1.5E-08 55.0 4.2 26 8-33 97-122 (425)
413 1ksh_A ARF-like protein 2; sma 97.1 0.00041 1.4E-08 48.3 3.6 25 7-31 16-40 (186)
414 1m2o_B GTP-binding protein SAR 97.1 0.00036 1.2E-08 49.1 3.2 24 8-31 22-45 (190)
415 2qgz_A Helicase loader, putati 97.1 0.00037 1.3E-08 53.2 3.5 25 9-33 152-176 (308)
416 2cxx_A Probable GTP-binding pr 97.1 0.00032 1.1E-08 48.9 3.0 22 10-31 2-23 (190)
417 1zj6_A ADP-ribosylation factor 97.1 0.00044 1.5E-08 48.3 3.7 25 7-31 14-38 (187)
418 1mh1_A RAC1; GTP-binding, GTPa 97.1 0.00046 1.6E-08 47.9 3.7 24 9-32 5-28 (186)
419 3lxw_A GTPase IMAP family memb 97.1 0.00039 1.3E-08 51.2 3.5 23 8-30 20-42 (247)
420 3lda_A DNA repair protein RAD5 97.1 0.00031 1.1E-08 55.5 3.1 22 10-31 179-200 (400)
421 1tf7_A KAIC; homohexamer, hexa 97.1 0.0003 1E-08 57.6 3.1 20 10-29 40-59 (525)
422 2h17_A ADP-ribosylation factor 97.0 0.00035 1.2E-08 48.6 3.0 24 8-31 20-43 (181)
423 3reg_A RHO-like small GTPase; 97.0 0.00041 1.4E-08 48.7 3.4 25 8-32 22-46 (194)
424 2iwr_A Centaurin gamma 1; ANK 97.0 0.00042 1.4E-08 47.8 3.4 25 8-32 6-30 (178)
425 3qkt_A DNA double-strand break 97.0 0.00042 1.4E-08 53.5 3.7 22 9-30 23-44 (339)
426 1e69_A Chromosome segregation 97.0 0.00031 1E-08 53.9 2.9 20 11-30 26-45 (322)
427 1ewq_A DNA mismatch repair pro 97.0 0.00032 1.1E-08 59.9 3.2 21 10-30 577-597 (765)
428 3c5c_A RAS-like protein 12; GD 97.0 0.00047 1.6E-08 48.3 3.6 25 8-32 20-44 (187)
429 2fh5_B SR-beta, signal recogni 97.0 0.00042 1.4E-08 49.5 3.4 25 8-32 6-30 (214)
430 1ni3_A YCHF GTPase, YCHF GTP-b 97.0 0.00037 1.3E-08 54.9 3.3 23 9-31 20-42 (392)
431 4dhe_A Probable GTP-binding pr 97.0 0.00019 6.4E-09 51.7 1.6 25 7-31 27-51 (223)
432 2fg5_A RAB-22B, RAS-related pr 97.0 0.00037 1.3E-08 49.0 3.1 25 8-32 22-46 (192)
433 3pxg_A Negative regulator of g 97.0 0.00046 1.6E-08 55.7 4.0 23 11-33 203-225 (468)
434 1r8s_A ADP-ribosylation factor 97.0 0.00049 1.7E-08 46.8 3.6 22 11-32 2-23 (164)
435 1f6b_A SAR1; gtpases, N-termin 97.0 0.00036 1.2E-08 49.4 3.0 23 8-30 24-46 (198)
436 3co5_A Putative two-component 97.0 0.00017 5.8E-09 48.6 1.2 25 10-34 28-52 (143)
437 3gj0_A GTP-binding nuclear pro 97.0 0.00046 1.6E-08 49.6 3.6 27 7-33 13-40 (221)
438 1g8p_A Magnesium-chelatase 38 97.0 0.00024 8.4E-09 54.7 2.2 24 11-34 47-70 (350)
439 2xkx_A Disks large homolog 4; 97.0 0.0097 3.3E-07 50.6 12.1 160 9-191 531-708 (721)
440 1zd9_A ADP-ribosylation factor 97.0 0.00045 1.6E-08 48.3 3.4 23 9-31 22-44 (188)
441 1x3s_A RAS-related protein RAB 97.0 0.00036 1.2E-08 48.9 2.9 24 9-32 15-38 (195)
442 2o5v_A DNA replication and rep 97.0 0.00039 1.3E-08 54.2 3.3 21 11-31 28-48 (359)
443 1wb9_A DNA mismatch repair pro 97.0 0.00035 1.2E-08 59.9 3.3 21 10-30 608-628 (800)
444 2xxa_A Signal recognition part 97.0 0.0006 2.1E-08 54.5 4.4 27 7-33 98-124 (433)
445 3hr8_A Protein RECA; alpha and 97.0 0.00046 1.6E-08 53.7 3.6 24 10-33 62-85 (356)
446 3dz8_A RAS-related protein RAB 97.0 0.00055 1.9E-08 48.0 3.8 24 9-32 23-46 (191)
447 2bjv_A PSP operon transcriptio 97.0 0.00039 1.3E-08 51.6 3.1 25 10-34 30-54 (265)
448 1iqp_A RFCS; clamp loader, ext 97.0 0.0006 2E-08 51.9 4.2 22 12-33 49-70 (327)
449 2b8t_A Thymidine kinase; deoxy 97.0 0.00064 2.2E-08 49.4 4.0 24 10-33 13-36 (223)
450 1ega_A Protein (GTP-binding pr 97.0 0.00041 1.4E-08 52.7 3.1 22 9-30 8-29 (301)
451 2il1_A RAB12; G-protein, GDP, 97.0 0.0005 1.7E-08 48.3 3.3 22 9-30 26-47 (192)
452 2j1l_A RHO-related GTP-binding 97.0 0.00051 1.7E-08 49.2 3.4 23 8-30 33-55 (214)
453 3iev_A GTP-binding protein ERA 97.0 0.00048 1.6E-08 52.5 3.4 26 5-30 6-31 (308)
454 4dey_A Voltage-dependent L-typ 97.0 0.0058 2E-07 46.8 9.3 169 9-195 142-325 (337)
455 1zcb_A G alpha I/13; GTP-bindi 97.0 0.00057 2E-08 53.3 3.9 28 7-34 31-58 (362)
456 2qen_A Walker-type ATPase; unk 97.0 0.00059 2E-08 52.3 3.9 31 10-40 32-62 (350)
457 2chq_A Replication factor C sm 97.0 0.00067 2.3E-08 51.4 4.1 22 12-33 41-62 (319)
458 3b1v_A Ferrous iron uptake tra 97.0 0.00056 1.9E-08 51.2 3.6 23 9-31 3-25 (272)
459 1w1w_A Structural maintenance 96.9 0.00051 1.7E-08 54.8 3.5 25 9-33 26-50 (430)
460 2h57_A ADP-ribosylation factor 96.9 0.00042 1.4E-08 48.5 2.7 24 8-31 20-43 (190)
461 3a1s_A Iron(II) transport prot 96.9 0.0005 1.7E-08 51.0 3.3 24 8-31 4-27 (258)
462 1sxj_B Activator 1 37 kDa subu 96.9 0.00067 2.3E-08 51.5 4.1 22 12-33 45-66 (323)
463 1zbd_A Rabphilin-3A; G protein 96.9 0.00064 2.2E-08 48.0 3.7 24 8-31 7-30 (203)
464 2qu8_A Putative nucleolar GTP- 96.9 0.00066 2.3E-08 49.1 3.7 23 8-30 28-50 (228)
465 2q3h_A RAS homolog gene family 96.9 0.00067 2.3E-08 47.9 3.6 24 7-30 18-41 (201)
466 2o52_A RAS-related protein RAB 96.9 0.00054 1.9E-08 48.5 3.1 23 8-30 24-46 (200)
467 3llu_A RAS-related GTP-binding 96.9 0.00057 1.9E-08 48.2 3.2 25 7-31 18-42 (196)
468 1ypw_A Transitional endoplasmi 96.9 0.00028 9.5E-09 60.8 1.8 30 9-38 511-540 (806)
469 3cf2_A TER ATPase, transitiona 96.9 0.00057 2E-08 58.5 3.6 33 8-40 510-542 (806)
470 3iby_A Ferrous iron transport 96.9 0.00054 1.9E-08 50.8 3.1 22 10-31 2-23 (256)
471 4aby_A DNA repair protein RECN 96.9 0.00014 4.8E-09 57.6 -0.2 28 94-122 296-325 (415)
472 3cph_A RAS-related protein SEC 96.9 0.00071 2.4E-08 48.1 3.6 24 8-31 19-42 (213)
473 4gzl_A RAS-related C3 botulinu 96.9 0.00068 2.3E-08 48.2 3.4 26 7-32 28-53 (204)
474 2hup_A RAS-related protein RAB 96.9 0.00067 2.3E-08 48.1 3.4 23 9-31 29-51 (201)
475 2f7s_A C25KG, RAS-related prot 96.9 0.0007 2.4E-08 48.4 3.5 23 9-31 25-47 (217)
476 2cjw_A GTP-binding protein GEM 96.9 0.00079 2.7E-08 47.4 3.6 25 8-32 5-29 (192)
477 2gco_A H9, RHO-related GTP-bin 96.9 0.00071 2.4E-08 47.9 3.4 24 9-32 25-48 (201)
478 1mky_A Probable GTP-binding pr 96.9 0.00077 2.6E-08 53.9 3.9 24 8-31 179-202 (439)
479 2x77_A ADP-ribosylation factor 96.9 0.00052 1.8E-08 47.9 2.6 24 7-30 20-43 (189)
480 2dby_A GTP-binding protein; GD 96.9 0.00058 2E-08 53.4 3.0 23 10-32 2-24 (368)
481 3k1j_A LON protease, ATP-depen 96.8 0.00056 1.9E-08 57.0 3.1 25 10-34 61-85 (604)
482 1u0j_A DNA replication protein 96.8 0.001 3.6E-08 49.5 4.1 26 10-35 105-130 (267)
483 2fv8_A H6, RHO-related GTP-bin 96.8 0.00077 2.6E-08 48.0 3.3 23 9-31 25-47 (207)
484 1ko7_A HPR kinase/phosphatase; 96.8 0.00076 2.6E-08 51.4 3.4 29 10-39 145-173 (314)
485 2zr9_A Protein RECA, recombina 96.8 0.00082 2.8E-08 52.2 3.6 24 10-33 62-85 (349)
486 3thx_A DNA mismatch repair pro 96.8 0.00066 2.2E-08 59.2 3.3 21 10-30 663-683 (934)
487 3q3j_B RHO-related GTP-binding 96.8 0.00099 3.4E-08 47.8 3.8 25 8-32 26-50 (214)
488 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.00089 3.1E-08 51.2 3.6 23 10-32 124-146 (331)
489 3i8s_A Ferrous iron transport 96.8 0.00086 2.9E-08 50.2 3.5 23 9-31 3-25 (274)
490 1xx6_A Thymidine kinase; NESG, 96.8 0.0016 5.5E-08 46.1 4.8 25 9-33 8-32 (191)
491 1a5t_A Delta prime, HOLB; zinc 96.8 0.0013 4.4E-08 50.7 4.6 30 7-36 22-51 (334)
492 2j0v_A RAC-like GTP-binding pr 96.8 0.0011 3.8E-08 47.2 3.9 25 8-32 8-32 (212)
493 3thx_B DNA mismatch repair pro 96.8 0.00045 1.6E-08 60.0 2.0 21 10-30 674-694 (918)
494 3pxi_A Negative regulator of g 96.8 0.0012 4.1E-08 56.5 4.5 24 10-33 202-225 (758)
495 2g3y_A GTP-binding protein GEM 96.7 0.0011 3.9E-08 47.6 3.6 23 8-30 36-58 (211)
496 2e87_A Hypothetical protein PH 96.7 0.00095 3.3E-08 51.9 3.4 25 7-31 165-189 (357)
497 1wf3_A GTP-binding protein; GT 96.7 0.0011 3.7E-08 50.4 3.6 22 9-30 7-28 (301)
498 1knx_A Probable HPR(Ser) kinas 96.7 0.00079 2.7E-08 51.3 2.6 29 10-39 148-176 (312)
499 2qtf_A Protein HFLX, GTP-bindi 96.7 0.001 3.5E-08 52.0 3.3 21 10-30 180-200 (364)
500 3nbx_X ATPase RAVA; AAA+ ATPas 96.7 0.00058 2E-08 55.5 1.9 24 11-34 43-66 (500)
No 1
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=100.00 E-value=7.8e-37 Score=223.02 Aligned_cols=189 Identities=41% Similarity=0.674 Sum_probs=169.1
Q ss_pred ccCCCCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 029287 3 VKGGKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEME 82 (196)
Q Consensus 3 ~~~~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~ 82 (196)
....+++++|+|.|||||||+|+|+.|+++||+.+++.|+++|..+...++.+..+++++..|..++++.+...+.+.+.
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~ 102 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMI 102 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence 34456778999999999999999999999999999999999999999999999999999999999999999999988886
Q ss_pred cC--CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc--CCCCCCcHHHHHHHHHHHHhchHhH
Q 029287 83 SS--DSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN--EGRVDDNIDTVRKRLQVFKALNLPV 158 (196)
Q Consensus 83 ~~--~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (196)
.. ...+||+||||.+..|...|...+. .++.+|+|++|.+++.+|+..|. .+|.+|+.+.+.+|+..|.+...++
T Consensus 103 ~~~~~~~g~ilDGfPRt~~Qa~~l~~~~~-~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~t~pl 181 (217)
T 3umf_A 103 KLVDKNCHFLIDGYPRELDQGIKFEKEVC-PCLCVINFDVSEEVMRKRLLKRAETSNRVDDNEETIVKRFRTFNELTKPV 181 (217)
T ss_dssp HHTTTCSEEEEETBCSSHHHHHHHHHHTC-CCSEEEEEECCHHHHHHHHSCC------CHHHHHHHHHHHHHHHHHTHHH
T ss_pred hccccccCcccccCCCcHHHHHHHHHhCC-ccCEEEeccCCHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 42 3468999999999999999887654 78999999999999999999884 3577778999999999999999999
Q ss_pred HHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287 159 INYYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192 (196)
Q Consensus 159 ~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~ 192 (196)
+++|.+.+.++.||+++++++|+++|.+.++++.
T Consensus 182 ~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k~G 215 (217)
T 3umf_A 182 IEHYKQQNKVITIDASGTVDAIFDKVNHELQKFG 215 (217)
T ss_dssp HHHHHTTTCEEEEETTSCHHHHHHHHHHHHHTTT
T ss_pred HHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999988753
No 2
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=100.00 E-value=8.7e-35 Score=211.24 Aligned_cols=178 Identities=33% Similarity=0.676 Sum_probs=163.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF 89 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~ 89 (196)
|+|+|.|||||||+|+|+.|+++||+.|++.|+++|+.+...++.+..+++++..|..++++.+..++.+.+.. ..+|
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~--~~~~ 78 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK--HGNV 78 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS--SSCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc--CCce
Confidence 58899999999999999999999999999999999999999999999999999999999999999999998875 4579
Q ss_pred EEeCCCCCHHHHHHHHHH---hCCCCcEEEEeecChHHHHHHHhhccC----------------------CCCCCcHHHH
Q 029287 90 LIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVLNRNE----------------------GRVDDNIDTV 144 (196)
Q Consensus 90 iid~~~~~~~~~~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl~~r~~----------------------~~~~~~~~~~ 144 (196)
|+||||.+..|...+... ....++.+|+|++|.+++.+|+..|+. .|.+++.+.+
T Consensus 79 ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD~~e~i 158 (206)
T 3sr0_A 79 IFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVI 158 (206)
T ss_dssp EEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCCTTCCCBCCGGGSHHHH
T ss_pred EecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCCCCceecccCCCCHHHH
Confidence 999999999999888654 356899999999999999999998841 3567789999
Q ss_pred HHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287 145 RKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFA 189 (196)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~ 189 (196)
++|+..|.+...++.++|.+.+.+..||+++++++|+++|.+.+.
T Consensus 159 ~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~ 203 (206)
T 3sr0_A 159 KKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIG 203 (206)
T ss_dssp HHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999988774
No 3
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=8.1e-33 Score=202.41 Aligned_cols=179 Identities=34% Similarity=0.627 Sum_probs=148.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-CC
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSD-SK 87 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~-~~ 87 (196)
.|.++|+|+|||||||+++.|+++||+.+++.|++++..+...++.+..+++++..|..+++..+...+.+.+...+ ..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~~~ 87 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCAN 87 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGGTT
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcccCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999888643 36
Q ss_pred cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccC-----------------------------CCCC
Q 029287 88 KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNE-----------------------------GRVD 138 (196)
Q Consensus 88 ~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~-----------------------------~~~~ 138 (196)
+||+||||.+..|...|.. ....|+.+|+|++|++++.+|+..|.. .|.+
T Consensus 88 g~ILDGfPRt~~Qa~~L~~-~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L~~R~D 166 (230)
T 3gmt_A 88 GYLFDGFPRTIAQADAMKE-AGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDD 166 (230)
T ss_dssp CEEEESCCCSHHHHHHHHH-TTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGG
T ss_pred CeEecCCCCcHHHHHHHHH-hCCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCccccCCC
Confidence 8999999999998888764 456899999999999999999999851 3778
Q ss_pred CcHHHHHHHHHHHHhchHhHHHHHHhc-----------CcEEEEeCCCCHhHHHHHHHHHH
Q 029287 139 DNIDTVRKRLQVFKALNLPVINYYARR-----------GKLYTINAVGTVDEIFEQVRAVF 188 (196)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~I~~~~~~~~v~~~i~~~i 188 (196)
++.+.+++|+..|.+...+++++|.+. +.+..||+++++++|+++|.+++
T Consensus 167 D~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l 227 (230)
T 3gmt_A 167 DKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQ 227 (230)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC---------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHH
Confidence 899999999999999999999999973 67888999999999999988765
No 4
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.98 E-value=3e-30 Score=192.44 Aligned_cols=183 Identities=34% Similarity=0.603 Sum_probs=162.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSD- 85 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~- 85 (196)
+.|++|+|+|+|||||||+++.|++++|+.+++.+++++.....+++.+..+++++..+..+++......+...+....
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~~ 106 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQC 106 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcccc
Confidence 4678999999999999999999999999999999999999988999999999999999999999988888888887532
Q ss_pred CCcEEEeCCCCCHHHHHHHHHH---hCCCCcEEEEeecChHHHHHHHhhccC----------------------------
Q 029287 86 SKKFLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVLNRNE---------------------------- 134 (196)
Q Consensus 86 ~~~~iid~~~~~~~~~~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl~~r~~---------------------------- 134 (196)
..+||+|+||.+..|...+... ....||.+|+|++|++++.+|+.+|..
T Consensus 107 ~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l 186 (243)
T 3tlx_A 107 KKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPL 186 (243)
T ss_dssp SSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBC
T ss_pred cCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccccCCCcccCccccccccc
Confidence 4779999999998887776654 346799999999999999999998852
Q ss_pred -CCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287 135 -GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFA 189 (196)
Q Consensus 135 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~ 189 (196)
.|.+++.+.+++|+..|.....++.++|...+.++.||+++++++|+++|.+.+.
T Consensus 187 ~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 242 (243)
T 3tlx_A 187 IQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID 242 (243)
T ss_dssp BCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence 3556789999999999999999999999998889999999999999999988764
No 5
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.97 E-value=7.9e-29 Score=181.66 Aligned_cols=182 Identities=31% Similarity=0.636 Sum_probs=160.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcC-CCCc
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESS-DSKK 88 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~-~~~~ 88 (196)
|.|+|+|+|||||||+++.|++.+|+.+++.|+++++.....++.+..+.+.+..+...++......+...+... ...+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~ 80 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERG 80 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccccCC
Confidence 468899999999999999999999999999999999999999999999999999999899888888888887753 2567
Q ss_pred EEEeCCCCCHHHHHHHHHH---hCCCCcEEEEeecChHHHHHHHhhcc-----------------------------CCC
Q 029287 89 FLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVLNRN-----------------------------EGR 136 (196)
Q Consensus 89 ~iid~~~~~~~~~~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl~~r~-----------------------------~~~ 136 (196)
+|+|+||....+...+... ....||.+|+|++|++++.+|+.+|. .+|
T Consensus 81 ~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r 160 (216)
T 3dl0_A 81 FLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQR 160 (216)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECC
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCccccccccccCC
Confidence 9999999998877766654 34579999999999999999999882 135
Q ss_pred CCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287 137 VDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAAL 191 (196)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~ 191 (196)
.+++.+.+++|+..|.....+..++|...+.++.||+++++++++++|.+.+..+
T Consensus 161 ~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~~ 215 (216)
T 3dl0_A 161 ADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGGL 215 (216)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence 6778999999999999999999999998888999999999999999999888754
No 6
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.97 E-value=1.6e-28 Score=179.94 Aligned_cols=182 Identities=30% Similarity=0.631 Sum_probs=159.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcC-CCCc
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESS-DSKK 88 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~-~~~~ 88 (196)
|+|+|+|++||||||+++.|++.+|+.+++.|+++++.....++.+..+.+.+..+...++......+...+... ...+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~ 80 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQKG 80 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccCCCc
Confidence 478899999999999999999999999999999999999999999999999999999899888888888887753 2467
Q ss_pred EEEeCCCCCHHHHHHHHHH---hCCCCcEEEEeecChHHHHHHHhhcc-----------------------------CCC
Q 029287 89 FLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVLNRN-----------------------------EGR 136 (196)
Q Consensus 89 ~iid~~~~~~~~~~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl~~r~-----------------------------~~~ 136 (196)
+|+|+||....+...+... ....||.+|+|++|++++.+|+.+|. .+|
T Consensus 81 ~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r 160 (216)
T 3fb4_A 81 FLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQR 160 (216)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECC
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCccccC
Confidence 9999999998877766554 34568999999999999999999882 134
Q ss_pred CCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287 137 VDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAAL 191 (196)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~ 191 (196)
.+++.+.+++|+..|.....+..++|.+.+.+++||++++++++.++|.+.+..+
T Consensus 161 ~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~~ 215 (216)
T 3fb4_A 161 IDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGGL 215 (216)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHHhc
Confidence 5668899999999999999999999999888999999999999999999888654
No 7
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.97 E-value=2.6e-28 Score=179.48 Aligned_cols=183 Identities=25% Similarity=0.534 Sum_probs=153.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHh-cC-
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEME-SS- 84 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~-~~- 84 (196)
+++++|+|+|++||||||+++.|++.+|+.+++.|+++++....+++.+..+++++..|...++......+...+. ..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~ 81 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPA 81 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhccc
Confidence 3467899999999999999999999999999999999998888888899999999998888888888887777765 21
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHH---hCCCCcEEEEeecChHHHHHHHhhccC---------------------------
Q 029287 85 DSKKFLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVLNRNE--------------------------- 134 (196)
Q Consensus 85 ~~~~~iid~~~~~~~~~~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl~~r~~--------------------------- 134 (196)
.+.+||+|+|+.+..+...+... .+..||++||||+|++++.+|+..|..
T Consensus 82 ~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~~~~ 161 (220)
T 1aky_A 82 CKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEA 161 (220)
T ss_dssp GGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCB
T ss_pred cCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCcccccccccccc
Confidence 23678999999988776655433 356899999999999999999987741
Q ss_pred --CCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287 135 --GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFA 189 (196)
Q Consensus 135 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~ 189 (196)
.|.+++.+.+.+|+..|.....++.++|.+...++.||+++++++|+++|.+.+.
T Consensus 162 l~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 218 (220)
T 1aky_A 162 LVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLG 218 (220)
T ss_dssp CBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHT
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 2445677888999999999988888888777788899999999999999988764
No 8
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.97 E-value=1.6e-27 Score=171.47 Aligned_cols=184 Identities=48% Similarity=0.856 Sum_probs=152.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCC
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSK 87 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~ 87 (196)
.+++|+|+|++||||||+++.|++.+|+.+++.|+++++....+.+.+..+.+.+..+...+.......+...+....+.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~~~~ 84 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDANQGK 84 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTSTTC
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 46799999999999999999999999999999999998887777888888999988888777777777777777654567
Q ss_pred cEEEeCCCCCHHHHHHHHHHhCC--CCcEEEEeecChHHHHHHHhhccC--CCCCCcHHHHHHHHHHHHhchHhHHHHHH
Q 029287 88 KFLIDGFPRSEENRAAFERIMGA--EPDIVLFFDCPEEEMVNRVLNRNE--GRVDDNIDTVRKRLQVFKALNLPVINYYA 163 (196)
Q Consensus 88 ~~iid~~~~~~~~~~~~~~~~~~--~p~~~i~ld~~~~~~~~Rl~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (196)
.+|+|++|.+..++..+...+.. .|+++|||++|++++.+|+.+|.. ++.+++.+.+.+++..|.....+..+.|.
T Consensus 85 ~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~~~~~~ 164 (194)
T 1qf9_A 85 NFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYN 164 (194)
T ss_dssp CEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred CEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHHHHHHH
Confidence 88999999998877766655442 689999999999999999998853 45566778888888888777777777776
Q ss_pred hcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287 164 RRGKLYTINAVGTVDEIFEQVRAVFAAL 191 (196)
Q Consensus 164 ~~~~~~~I~~~~~~~~v~~~i~~~i~~~ 191 (196)
....+++||++++++++.++|.+.+.+.
T Consensus 165 ~~~~~~~id~~~~~~~~~~~i~~~l~~~ 192 (194)
T 1qf9_A 165 KFDKVKIIPANRDVNEVYNDVENLFKSM 192 (194)
T ss_dssp HTTCEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence 6667788999999999999998887653
No 9
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.97 E-value=7.9e-28 Score=178.36 Aligned_cols=185 Identities=34% Similarity=0.617 Sum_probs=156.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSD- 85 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~- 85 (196)
..+++|+|+|++||||||+++.|++++|+.+++.++++++.....++.+..+++++..+..+++......+...+....
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~ 93 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPC 93 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhcccc
Confidence 4557899999999999999999999999999999999998888888899999999988888888888888887776432
Q ss_pred CCcEEEeCCCCCHHHHHHHHHH---hCCCCcEEEEeecChHHHHHHHhhccC----------------------------
Q 029287 86 SKKFLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVLNRNE---------------------------- 134 (196)
Q Consensus 86 ~~~~iid~~~~~~~~~~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl~~r~~---------------------------- 134 (196)
..+||+|+|+.+..+...+... ....|+.+|||++|++++.+|+..|..
T Consensus 94 ~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l 173 (233)
T 1ak2_A 94 KNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPL 173 (233)
T ss_dssp TTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTCCBC
T ss_pred cCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCccccccccccccc
Confidence 3579999999988776655443 345799999999999999999988741
Q ss_pred -CCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287 135 -GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAAL 191 (196)
Q Consensus 135 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~ 191 (196)
.|.+++.+.+.+|+..|.....+..++|.....++.||+++++++|+++|.+.+..+
T Consensus 174 ~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~~l~~~ 231 (233)
T 1ak2_A 174 IRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSKA 231 (233)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhh
Confidence 245567888999999999988888888887777889999999999999999888765
No 10
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.97 E-value=3.9e-28 Score=178.17 Aligned_cols=180 Identities=32% Similarity=0.615 Sum_probs=149.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcC-CC
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESS-DS 86 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~-~~ 86 (196)
++++|+|+|++||||||+++.|++++|+.+++.|+++++.....++.+..+++++..|...++......+...+... .+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~ 83 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVCV 83 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccC
Confidence 35788999999999999999999999999999999999888888889999999998888888888888877776642 24
Q ss_pred CcEEEeCCCCCHHHHHHHHH---HhCCCCcEEEEeecChHHHHHHHhhccC-----------------------------
Q 029287 87 KKFLIDGFPRSEENRAAFER---IMGAEPDIVLFFDCPEEEMVNRVLNRNE----------------------------- 134 (196)
Q Consensus 87 ~~~iid~~~~~~~~~~~~~~---~~~~~p~~~i~ld~~~~~~~~Rl~~r~~----------------------------- 134 (196)
.+||+|+||.+..|...+.. ..+..||.+|||++|++++.+|+..|..
T Consensus 84 ~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~ 163 (217)
T 3be4_A 84 NGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLV 163 (217)
T ss_dssp TCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBCB
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccccCCCCccccccccccccc
Confidence 67999999999777666653 2356899999999999999999998741
Q ss_pred CCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHH
Q 029287 135 GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAV 187 (196)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~ 187 (196)
.+.++..+.+.+++..|.....++.++|.+...++.||+++++++|+++|.+.
T Consensus 164 ~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~ 216 (217)
T 3be4_A 164 WRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKI 216 (217)
T ss_dssp CCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHhh
Confidence 12234677888899999888888889998777889999999999999998764
No 11
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.96 E-value=3.6e-27 Score=170.10 Aligned_cols=183 Identities=45% Similarity=0.821 Sum_probs=148.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhc--CC
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMES--SD 85 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~--~~ 85 (196)
++++|+|+|++||||||+++.|++.+|+.+++.|++++.....+.+.+..+++.+..|...+.....+.+...+.. ..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~ 87 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKVNT 87 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhcccc
Confidence 4678999999999999999999999999999999999888777888888899888888777777666666555542 24
Q ss_pred CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccC--CCCCCcHHHHHHHHHHHHhchHhHHHHHH
Q 029287 86 SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNE--GRVDDNIDTVRKRLQVFKALNLPVINYYA 163 (196)
Q Consensus 86 ~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (196)
+.++|+|++|....+...+...+ ..|+.+|||++|++++.+|+.+|.. ++.+++.+.+.+++..|.....++...|.
T Consensus 88 ~~~vi~d~~~~~~~~~~~~~~~~-~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 166 (196)
T 2c95_A 88 SKGFLIDGYPREVQQGEEFERRI-GQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYE 166 (196)
T ss_dssp CSCEEEESCCCSHHHHHHHHHHT-CCCSEEEEEECCHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred CCcEEEeCCCCCHHHHHHHHHhc-CCCCEEEEEECCHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999887766655544 5789999999999999999998742 33345677788888888777777777777
Q ss_pred hcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287 164 RRGKLYTINAVGTVDEIFEQVRAVFAAL 191 (196)
Q Consensus 164 ~~~~~~~I~~~~~~~~v~~~i~~~i~~~ 191 (196)
....++.||++++++++.++|.+.+..+
T Consensus 167 ~~~~~~~Id~~~~~e~v~~~i~~~l~~~ 194 (196)
T 2c95_A 167 KRGIVRKVNAEGSVDSVFSQVCTHLDAL 194 (196)
T ss_dssp HHTCEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred hcCcEEEEECCCCHHHHHHHHHHHHHHh
Confidence 6667788999999999999999888654
No 12
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.96 E-value=1.8e-27 Score=174.30 Aligned_cols=178 Identities=34% Similarity=0.649 Sum_probs=150.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-CCc
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSD-SKK 88 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~-~~~ 88 (196)
|.|+|+|++||||||+++.|++.+|+.+++.|+++++.+..+++.+..+++++..+...++......+...+.... ..+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~ 80 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNG 80 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCC
Confidence 4688999999999999999999999999999999999888888888888888888888888888888887776432 257
Q ss_pred EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccC-----------------------------CCCCC
Q 029287 89 FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNE-----------------------------GRVDD 139 (196)
Q Consensus 89 ~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~-----------------------------~~~~~ 139 (196)
||+|+||.+..+...+.. ....||.+|+||+|++++.+|+.+|.. .|.++
T Consensus 81 ~i~dg~~~~~~~~~~l~~-~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~~r~dd 159 (214)
T 1e4v_A 81 FLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDD 159 (214)
T ss_dssp EEEESCCCSHHHHHHHHH-TTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCTTC
T ss_pred EEEeCCCCCHHHHHHHHh-cCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCcccccCCCCCccccccccccccccCCCC
Confidence 899999998877666544 334799999999999999999987741 35667
Q ss_pred cHHHHHHHHHHHHhchHhHHHHHHhc-----CcEEEEeCCCCHhHHHHHHHHHH
Q 029287 140 NIDTVRKRLQVFKALNLPVINYYARR-----GKLYTINAVGTVDEIFEQVRAVF 188 (196)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~I~~~~~~~~v~~~i~~~i 188 (196)
+.+.+.+|+..|.....++.++|.+. ..++.||+++++++|+++|.+.+
T Consensus 160 ~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l 213 (214)
T 1e4v_A 160 QEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL 213 (214)
T ss_dssp SHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 78899999999999988888888764 57889999999999999988765
No 13
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.96 E-value=1.7e-27 Score=175.46 Aligned_cols=179 Identities=26% Similarity=0.487 Sum_probs=148.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF 89 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~ 89 (196)
|+|+|+|++||||||+++.|++.+|+.+++.|++++.....+++.+..+++.+..|...++......+...+....+.+|
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~g~~v 80 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKGKDGW 80 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHCTTCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhcccCCeE
Confidence 47889999999999999999999999999999999987777788899999999888888888788878777764225689
Q ss_pred EEeCCCCCHHHHHHHHHH---hCCCCcEEEEeecChHHHHHHHhhccCC-------------------------------
Q 029287 90 LIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVLNRNEG------------------------------- 135 (196)
Q Consensus 90 iid~~~~~~~~~~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl~~r~~~------------------------------- 135 (196)
|+|+|+.+..+...+... ....||.+|||++|++++.+|+.+|...
T Consensus 81 IlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~~~~l~~ 160 (223)
T 2xb4_A 81 LLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGALSA 160 (223)
T ss_dssp EEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTTSCCBTTCGGGCCBTTBCTTTCCBEEC
T ss_pred EEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccCCccccccCCCcccccccccccccccc
Confidence 999999987776666543 3568999999999999999999988411
Q ss_pred CCCCcHH-HHHHHHHHHHhchHhHHH---HHHh-----cCcEEEEeCCCCHhHHHHHHHHHH
Q 029287 136 RVDDNID-TVRKRLQVFKALNLPVIN---YYAR-----RGKLYTINAVGTVDEIFEQVRAVF 188 (196)
Q Consensus 136 ~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~I~~~~~~~~v~~~i~~~i 188 (196)
|.+++.+ .+++|+..|.....++.+ +|.. +..++.||+++++++|+++|.+.+
T Consensus 161 r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~~~~v~~~i~~~l 222 (223)
T 2xb4_A 161 RADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQL 222 (223)
T ss_dssp CGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 1223456 888999999999877777 7765 567889999999999999988765
No 14
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.96 E-value=2.5e-27 Score=171.36 Aligned_cols=184 Identities=41% Similarity=0.772 Sum_probs=147.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhc--CC
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMES--SD 85 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~--~~ 85 (196)
.+++|+|+|++||||||+++.|++.+|+.+++.|+++++....+.+.+..+.+.+..|...+.......+.+.+.. ..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~ 90 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGD 90 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccccc
Confidence 4578999999999999999999999999999999999888777778888888888888777777776666655543 24
Q ss_pred CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCC--CCCCcHHHHHHHHHHHHhchHhHHHHHH
Q 029287 86 SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEG--RVDDNIDTVRKRLQVFKALNLPVINYYA 163 (196)
Q Consensus 86 ~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (196)
+..+|+|+++.+..+...+...+ ..|+++|||++|++++.+|+.+|... +.+++.+.+.+|...|.....+...+|.
T Consensus 91 ~~~vi~dg~~~~~~~~~~l~~~~-~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 169 (199)
T 2bwj_A 91 TRGFLIDGYPREVKQGEEFGRRI-GDPQLVICMDCSADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYE 169 (199)
T ss_dssp CSCEEEETCCSSHHHHHHHHHHT-CCCSEEEEEECCHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccEEEeCCCCCHHHHHHHHHhc-CCCCEEEEEECCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999988776666544 37899999999999999999988421 2222456677777777777777667777
Q ss_pred hcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287 164 RRGKLYTINAVGTVDEIFEQVRAVFAALK 192 (196)
Q Consensus 164 ~~~~~~~I~~~~~~~~v~~~i~~~i~~~~ 192 (196)
....+++||++++++++.++|.+.+..++
T Consensus 170 ~~~~~~~id~~~~~e~v~~~i~~~l~~~~ 198 (199)
T 2bwj_A 170 TKTQLHKINAEGTPEDVFLQLCTAIDSIF 198 (199)
T ss_dssp HHSEEEEEETTSCHHHHHHHHHHHHHHHC
T ss_pred hcCCEEEEECCCCHHHHHHHHHHHHHHhc
Confidence 66677889999999999999998887653
No 15
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.96 E-value=1.3e-26 Score=168.34 Aligned_cols=185 Identities=44% Similarity=0.868 Sum_probs=147.8
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHh-cCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhc-
Q 029287 6 GKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIA-SNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMES- 83 (196)
Q Consensus 6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~- 83 (196)
++.+++|+|+|++||||||+++.|++.+|+.+++.|++++.... .+...+..+++.+..|...+.......+.+.+..
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~ 91 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDN 91 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhh
Confidence 45678999999999999999999999999999999999887643 5566777788888777777776666655554432
Q ss_pred --CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc--CCCCCCcHHHHHHHHHHHHhchHhHH
Q 029287 84 --SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN--EGRVDDNIDTVRKRLQVFKALNLPVI 159 (196)
Q Consensus 84 --~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (196)
.....+++|+++.+..+...+...+ ..|+++|||++|++++.+|+.+|. .++.+++.+.+.+++..|.....+..
T Consensus 92 l~~g~~~~i~dg~~~~~~~~~~~~~~~-~~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~~~~~~~~~~~ 170 (203)
T 1ukz_A 92 VKANKHKFLIDGFPRKMDQAISFERDI-VESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVI 170 (203)
T ss_dssp HHTTCCEEEEETCCCSHHHHHHHHHHT-CCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHHHH
T ss_pred hccCCCeEEEeCCCCCHHHHHHHHHhc-CCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhhHHHH
Confidence 1225789999999888777666544 358999999999999999999874 23455678888888888888888888
Q ss_pred HHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287 160 NYYARRGKLYTINAVGTVDEIFEQVRAVFAAL 191 (196)
Q Consensus 160 ~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~ 191 (196)
++|.....++.||++++++++.++|.+.+...
T Consensus 171 ~~~~~~~~vi~id~~~~~e~v~~~i~~~l~~~ 202 (203)
T 1ukz_A 171 EYFETKSKVVRVRCDRSVEDVYKDVQDAIRDS 202 (203)
T ss_dssp HHHHTTTCEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcEEEEECCCCHHHHHHHHHHHHhcc
Confidence 87776677888999999999999998887653
No 16
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.96 E-value=4.3e-27 Score=170.62 Aligned_cols=180 Identities=34% Similarity=0.688 Sum_probs=146.6
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcC-
Q 029287 6 GKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESS- 84 (196)
Q Consensus 6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~- 84 (196)
+..+++|+|+|++||||||+++.|++.+|+.+++.|++++......++.+..+++.+..+...+.......+.+.+...
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~ 96 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPD 96 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhccc
Confidence 4566899999999999999999999999999999999999877888888888999888888888877777776665432
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHHh---CCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHH
Q 029287 85 DSKKFLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINY 161 (196)
Q Consensus 85 ~~~~~iid~~~~~~~~~~~~~~~~---~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (196)
.+.++|+|+++.+..+...+...+ ...|+.+|+|++|++++.+|+.+| ++.+++.+.+++++..|.....++..+
T Consensus 97 ~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R--~r~~~~~e~~~~r~~~~~~~~~~~~~~ 174 (201)
T 2cdn_A 97 AANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGR--GRADDTDDVILNRMKVYRDETAPLLEY 174 (201)
T ss_dssp GTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHH--CCTTCSHHHHHHHHHHHHHHTTTHHHH
T ss_pred CCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC--CCCCCCHHHHHHHHHHHHHhhHHHHHH
Confidence 245789999999877766555432 356899999999999999999988 455567788888888888776666666
Q ss_pred HHhcCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287 162 YARRGKLYTINAVGTVDEIFEQVRAVFA 189 (196)
Q Consensus 162 ~~~~~~~~~I~~~~~~~~v~~~i~~~i~ 189 (196)
| ...+++||++++++++.++|.+.+.
T Consensus 175 ~--~~~~~~Id~~~~~eev~~~I~~~l~ 200 (201)
T 2cdn_A 175 Y--RDQLKTVDAVGTMDEVFARALRALG 200 (201)
T ss_dssp T--TTTEEEEECCSCHHHHHHHHHHHTT
T ss_pred h--cCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 6 4467889999999999999877653
No 17
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.96 E-value=4.7e-27 Score=173.49 Aligned_cols=183 Identities=32% Similarity=0.572 Sum_probs=149.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCC
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDS 86 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~ 86 (196)
+.+++|+|+|++||||||+++.|++.+|+.+++.|++++.....+++.+..+++++..|...++......+.+.+.....
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~~ 84 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNLTQ 84 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTCTT
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcccC
Confidence 45688999999999999999999999999999999999988778888898899998888878877666666666553234
Q ss_pred CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc----CC-------------------------CC
Q 029287 87 KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN----EG-------------------------RV 137 (196)
Q Consensus 87 ~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~----~~-------------------------~~ 137 (196)
..||+|+|+.+..+...+... ..|+.+||||+|++++.+|+..|. .+ |.
T Consensus 85 ~~~vid~~~~~~~~~~~l~~~--~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~~~l~~r~ 162 (227)
T 1zd8_A 85 YSWLLDGFPRTLPQAEALDRA--YQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQRE 162 (227)
T ss_dssp SCEEEESCCCSHHHHHHHHTT--SCCCEEEEEECCHHHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCG
T ss_pred CCEEEeCCCCCHHHHHHHHHh--cCCCEEEEEECCHHHHHHHHHcCcCCCccCCccccccCCCCcccccccccccccCCC
Confidence 678999999887765554432 468999999999999999998763 11 33
Q ss_pred CCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287 138 DDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192 (196)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~ 192 (196)
+++.+.+++|+..|.....++.++|.+...++.||++ ++++++++|.+.+...+
T Consensus 163 ~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v~~~i~~~l~~~~ 216 (227)
T 1zd8_A 163 DDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT-ETNKIWPYVYAFLQTKV 216 (227)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC-CHHHHHHHHHHHHHhhc
Confidence 4577889999999999988888888777778899998 99999999999887654
No 18
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.96 E-value=1.7e-26 Score=166.30 Aligned_cols=183 Identities=50% Similarity=0.906 Sum_probs=145.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhc-CChhhHHHHHHhhcCCCCCHHHHHHHHHHHHh----
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIAS-NSEYGTTILNTIKEGKIVPSEVTVSLIQKEME---- 82 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~---- 82 (196)
++++|+|+|++||||||+++.|++.+|+.+++.|++++....+ .+..+..+++.+..|...+.......+...+.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 81 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMA 81 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhc
Confidence 3678999999999999999999999999999999998876543 44567777887777777776655544443332
Q ss_pred -cCCCCcEEEeCCCCCHHHHHHHHHHhC--CCCcEEEEeecChHHHHHHHhhcc--CCCCCCcHHHHHHHHHHHHhchHh
Q 029287 83 -SSDSKKFLIDGFPRSEENRAAFERIMG--AEPDIVLFFDCPEEEMVNRVLNRN--EGRVDDNIDTVRKRLQVFKALNLP 157 (196)
Q Consensus 83 -~~~~~~~iid~~~~~~~~~~~~~~~~~--~~p~~~i~ld~~~~~~~~Rl~~r~--~~~~~~~~~~~~~~~~~~~~~~~~ 157 (196)
...+..+|+|+++.+..++..+...+. ..|+.+|||++|++++.+|+.+|. .+|.+++.+.+.+++..|.....+
T Consensus 82 ~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~ 161 (196)
T 1tev_A 82 ANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKP 161 (196)
T ss_dssp HCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhHHH
Confidence 123578899999999877666655443 357889999999999999999874 256666788888899999999888
Q ss_pred HHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHh
Q 029287 158 VINYYARRGKLYTINAVGTVDEIFEQVRAVFAA 190 (196)
Q Consensus 158 ~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~ 190 (196)
...+|.+...+++||++++++++.++|.+.+..
T Consensus 162 ~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 194 (196)
T 1tev_A 162 IIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK 194 (196)
T ss_dssp HHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 888888777888999999999999999888764
No 19
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.96 E-value=6.7e-27 Score=167.48 Aligned_cols=177 Identities=36% Similarity=0.735 Sum_probs=144.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCC
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSK 87 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~ 87 (196)
.+++|+|+|++||||||+++.|++.+|+.+++.|++++.....+.+.+..+++.+..+...++......+...+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~~---- 78 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELAE---- 78 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCCS----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhcC----
Confidence 3578999999999999999999999999999999999987777888888899998888888877777766666543
Q ss_pred cEEEeCCCCCHHHHHHHHHHh---CCCCcEEEEeecChHHHHHHHhhcc--CCCCCCcHHHHHHHHHHHHhchHhHHHHH
Q 029287 88 KFLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVNRVLNRN--EGRVDDNIDTVRKRLQVFKALNLPVINYY 162 (196)
Q Consensus 88 ~~iid~~~~~~~~~~~~~~~~---~~~p~~~i~ld~~~~~~~~Rl~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (196)
++|+|+++.+..+...+...+ +..|+.+|||++|++++.+|+.+|. .++.+++.+.+.+++..|.....+..+.|
T Consensus 79 ~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l~~~~ 158 (186)
T 3cm0_A 79 RVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYY 158 (186)
T ss_dssp EEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999877665544322 2358999999999999999999874 24566678888888888887767777777
Q ss_pred HhcCcEEEEeCCCCHhHHHHHHHHHH
Q 029287 163 ARRGKLYTINAVGTVDEIFEQVRAVF 188 (196)
Q Consensus 163 ~~~~~~~~I~~~~~~~~v~~~i~~~i 188 (196)
.....+++||++++++++.++|.+.+
T Consensus 159 ~~~~~~~~id~~~~~~~v~~~i~~~l 184 (186)
T 3cm0_A 159 EARGVLKRVDGLGTPDEVYARIRAAL 184 (186)
T ss_dssp HHTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred HhcCcEEEEECCCCHHHHHHHHHHHh
Confidence 76666888999999999999987765
No 20
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.95 E-value=6.6e-26 Score=166.80 Aligned_cols=184 Identities=32% Similarity=0.623 Sum_probs=143.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcC--
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESS-- 84 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~-- 84 (196)
+.|++|+|+|++||||||+++.|++++|+.+++.|++++.....+++.+..+++++..|...++......+...+...
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 82 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDA 82 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccc
Confidence 356789999999999999999999999999999999999877888889999999998888888776666565555421
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccC-------------------------CCCCC
Q 029287 85 DSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNE-------------------------GRVDD 139 (196)
Q Consensus 85 ~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~-------------------------~~~~~ 139 (196)
...++|+|||+.+..+...+.. .+..|+++||||+|++++.+|+..|.. .+..+
T Consensus 83 ~~~~~vidg~~~~~~~~~~l~~-~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~~d 161 (222)
T 1zak_A 83 QENGWLLDGYPRSYSQAMALET-LEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDD 161 (222)
T ss_dssp HHTCEEEESCCCSHHHHHHHHT-TTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCCTTC
T ss_pred cCCcEEEECCCCCHHHHHHHHH-cCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccCCCC
Confidence 1356888999998766655543 345789999999999999999987631 12234
Q ss_pred cHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287 140 NIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKL 193 (196)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~ 193 (196)
..+.+.+|+..|.....++..+|.. .++.||++++++++.++|.+.+..++.
T Consensus 162 ~~~~i~~Rl~~~~~~~~~l~~~y~~--~~~~Id~~~~~~ev~~~I~~~l~~~l~ 213 (222)
T 1zak_A 162 TEEKVKLRLETYYQNIESLLSTYEN--IIVKVQGDATVDAVFAKIDELLGSILE 213 (222)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHTTCC--CEEEEECSSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh--cEEEEECCCCHHHHHHHHHHHHHhhcc
Confidence 5667777777777665665555533 578899999999999999988876653
No 21
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.91 E-value=4e-22 Score=148.78 Aligned_cols=183 Identities=33% Similarity=0.587 Sum_probs=140.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCC
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSK 87 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~ 87 (196)
+|.+|+|+|++||||||+++.|++++|+..++.|++++.......+.+..+...+..+...+.....+.+...+......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~ 105 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQ 105 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 46799999999999999999999999999999999988766555566666776666677677766666666555433345
Q ss_pred cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccC-----------------------------CCCC
Q 029287 88 KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNE-----------------------------GRVD 138 (196)
Q Consensus 88 ~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~-----------------------------~~~~ 138 (196)
.|++++++....+...+.. ...++++++||+|++++.+|+..|.. ++..
T Consensus 106 ~~il~g~~~~~~~~~~l~~--~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~ld~ 183 (246)
T 2bbw_A 106 HWLLDGFPRTLGQAEALDK--ICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQED 183 (246)
T ss_dssp CEEEESCCCSHHHHHHHHT--TCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCBCCGG
T ss_pred eEEEECCCCCHHHHHHHHh--hcCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCcccccccccccccccCCC
Confidence 6889999877644333322 24688999999999999999977631 1123
Q ss_pred CcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287 139 DNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKL 193 (196)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~ 193 (196)
++.+.+.+++..|.....++.++|.+.+.++.||++.+ ++++++|.+.+.+.+.
T Consensus 184 ~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~~~i~~~l~~~~~ 237 (246)
T 2bbw_A 184 DKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-NKIWPYVYTLFSNKIT 237 (246)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHHHHHHHTTSC
T ss_pred CcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHHHHHHHHHHHhhCC
Confidence 35677788888888887788888888778899999988 9999999998877543
No 22
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.90 E-value=2.6e-21 Score=136.75 Aligned_cols=173 Identities=17% Similarity=0.237 Sum_probs=114.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCC----hhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNS----EYGTTILNTIKEGKIVPSEVTVSLIQKEMESSD 85 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~ 85 (196)
++|+|.|++||||||+++.| +.+|+.+++.++++++...... +........... .........+.+.+....
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~ 77 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREI---YGDGVVARLCVEELGTSN 77 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHH---HCTTHHHHHHHHHHCSCC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhh---CCHHHHHHHHHHHHHhcC
Confidence 58899999999999999999 8999999999999887644321 111112221111 012233445555554445
Q ss_pred CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhc
Q 029287 86 SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARR 165 (196)
Q Consensus 86 ~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (196)
...+|+|++ ....++..+..... .|+.+|||++|++++.+|+..|.......+.+.+.++......+. ... +...
T Consensus 78 ~~~vi~dg~-~~~~~~~~l~~~~~-~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~~--~~~-~~~~ 152 (179)
T 3lw7_A 78 HDLVVFDGV-RSLAEVEEFKRLLG-DSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELKLG--IGE-VIAM 152 (179)
T ss_dssp CSCEEEECC-CCHHHHHHHHHHHC-SCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHHHHT--HHH-HHHT
T ss_pred CCeEEEeCC-CCHHHHHHHHHHhC-CCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhccC--hHh-HHHh
Confidence 678999998 77777777777665 788999999999999999999842222245566555543222211 111 2222
Q ss_pred CcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287 166 GKLYTINAVGTVDEIFEQVRAVFAALK 192 (196)
Q Consensus 166 ~~~~~I~~~~~~~~v~~~i~~~i~~~~ 192 (196)
..++|+++++++++.++|.+.+..++
T Consensus 153 -ad~vId~~~~~~~~~~~i~~~l~~~l 178 (179)
T 3lw7_A 153 -ADYIITNDSNYEEFKRRCEEVTDRVL 178 (179)
T ss_dssp -CSEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred -CCEEEECCCCHHHHHHHHHHHHHHHh
Confidence 23567888899999999999888765
No 23
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.89 E-value=2.5e-21 Score=140.39 Aligned_cols=171 Identities=17% Similarity=0.268 Sum_probs=108.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHh--CCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHH------------H
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNY--GLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT------------V 74 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------------~ 74 (196)
..+|+|+|++||||||+++.|++++ |..++.. ++ +.+++.+..+++.+..+........ .
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~-----~e-P~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~ 75 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT-----RE-PGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLV 75 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE-----ES-STTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe-----eC-CCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence 3588999999999999999999998 3333221 11 3456778888888877665543211 1
Q ss_pred HHHHHHHhcCCCCcEEEeCCCCCHH------------HHHHHHHH--hCCCCcEEEEeecChHHHHHHHhhccC--CCCC
Q 029287 75 SLIQKEMESSDSKKFLIDGFPRSEE------------NRAAFERI--MGAEPDIVLFFDCPEEEMVNRVLNRNE--GRVD 138 (196)
Q Consensus 75 ~~i~~~l~~~~~~~~iid~~~~~~~------------~~~~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~~r~~--~~~~ 138 (196)
..+...+. .+..+|+|+|..+.. ....+... -.+.||++||||+|++++.+|+.+|+. +|.+
T Consensus 76 ~~i~p~l~--~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~dr~e 153 (205)
T 4hlc_A 76 LKVIPALK--EGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLD 153 (205)
T ss_dssp HTHHHHHH--TTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC-------CC
T ss_pred HHHHHHHH--cCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCcccchh
Confidence 22333333 467788999874321 11122221 246899999999999999999988732 2222
Q ss_pred C-cHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287 139 D-NIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKL 193 (196)
Q Consensus 139 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~ 193 (196)
. +.+.+++..+.|..... ..+.++.+||+++++++|.++|.+.+.+.++
T Consensus 154 ~~~~~f~~~v~~~Y~~l~~------~~~~~~~~IDa~~~~e~V~~~i~~~i~~~L~ 203 (205)
T 4hlc_A 154 QEDLKFHEKVIEGYQEIIH------NESQRFKSVNADQPLENVVEDTYQTIIKYLE 203 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHH------SCCTTEEEEETTSCHHHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHHHH------hCCCCEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence 1 22333333344444311 1245799999999999999999888876653
No 24
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.88 E-value=4.5e-21 Score=138.33 Aligned_cols=168 Identities=18% Similarity=0.280 Sum_probs=107.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh---CCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHH----------HHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY---GLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSE----------VTVSL 76 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~~~ 76 (196)
|+|+|+|++||||||+++.|++++ |..++.. ++ +.+++.+..+++.+......+.. .....
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t-----re-P~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~ 74 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK-----RE-PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE 74 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE-----ES-SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE-----EC-CCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999988 5544332 11 23455666666666544332221 11233
Q ss_pred HHHHHhcCCCCcEEEeCCCCCHHHH------------HHHHH--HhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHH
Q 029287 77 IQKEMESSDSKKFLIDGFPRSEENR------------AAFER--IMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNID 142 (196)
Q Consensus 77 i~~~l~~~~~~~~iid~~~~~~~~~------------~~~~~--~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~ 142 (196)
+...+. .+..+|+|+|..+.... ..+.. .....||+++|||+|++++.+|...+ +|.+ +.+
T Consensus 75 I~~~L~--~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~--dr~e-~~e 149 (197)
T 3hjn_A 75 IKQYLS--EGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGEL--NRFE-KRE 149 (197)
T ss_dssp HHHHHT--TTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC-----CTTC-CHH
T ss_pred HHHHHH--CCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCc--Cccc-cHH
Confidence 444443 46788999987542211 11111 12468999999999999999997765 4444 345
Q ss_pred HHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhhh
Q 029287 143 TVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKLV 194 (196)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~~ 194 (196)
.+++..+.|..... ..+.++++||+++++++|.++|.+.+++.++.
T Consensus 150 f~~rv~~~y~~la~------~~~~~~~~IDa~~~~eeV~~~I~~~i~~rl~l 195 (197)
T 3hjn_A 150 FLERVREGYLVLAR------EHPERIVVLDGKRSIEEIHRDVVREVKRRWKL 195 (197)
T ss_dssp HHHHHHHHHHHHHH------HCTTTEEEEETTSCHHHHHHHHHHHHSCC---
T ss_pred HHHHHHHHHHHHHH------hCCCCEEEEcCCCCHHHHHHHHHHHHHHHhCC
Confidence 55555566655421 22457899999999999999999998776543
No 25
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.87 E-value=3.4e-20 Score=135.16 Aligned_cols=170 Identities=17% Similarity=0.231 Sum_probs=114.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhC---CceechhHHHHHHHhcCChhhHHHHHHhhcCC--CCCHHHH----------
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYG---LTHLSAGELLRREIASNSEYGTTILNTIKEGK--IVPSEVT---------- 73 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~---------- 73 (196)
.++|+|+|++||||||+++.|+++++ +.++.. +. +.+++.|..+++++..+. .......
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~-----~~-p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~ 79 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT-----RE-PGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQ 79 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE-----ES-SCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc-----cC-CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 47888999999999999999999984 433322 11 246677888888887653 2222111
Q ss_pred --HHHHHHHHhcCCCCcEEEeCCCCCH------------HHHHHHHHH--hCCCCcEEEEeecChHHHHHHHhhccC-CC
Q 029287 74 --VSLIQKEMESSDSKKFLIDGFPRSE------------ENRAAFERI--MGAEPDIVLFFDCPEEEMVNRVLNRNE-GR 136 (196)
Q Consensus 74 --~~~i~~~l~~~~~~~~iid~~~~~~------------~~~~~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~~r~~-~~ 136 (196)
.+.+...+. .+..+|+|+|..+. .....+... -.+.||++||||+|++++.+|+.+|.. ++
T Consensus 80 ~~~~~i~p~l~--~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~dr 157 (213)
T 4edh_A 80 HLAGVIRPALA--RGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDR 157 (213)
T ss_dssp HHHHTHHHHHH--TTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSCCT
T ss_pred HHHHHHHHHHH--CCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcCc
Confidence 122333333 46788999976441 111122221 257899999999999999999998842 34
Q ss_pred CCC-cHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287 137 VDD-NIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192 (196)
Q Consensus 137 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~ 192 (196)
.+. +.+.+++..+.|.... .. .+..+++||+++++++|.++|.+.+..++
T Consensus 158 ~E~~~~~~~~rv~~~y~~l~----~~--~~~~~~vIDa~~s~eeV~~~I~~~l~~~l 208 (213)
T 4edh_A 158 FEQEDRRFFEAVRQTYLQRA----AQ--APERYQVLDAGLPLAEVQAGLDRLLPNLL 208 (213)
T ss_dssp TTTSCHHHHHHHHHHHHHHH----HH--CTTTEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHH----HH--CCCcEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 443 3566665566676652 12 24579999999999999999998887765
No 26
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.86 E-value=5.3e-21 Score=140.38 Aligned_cols=175 Identities=17% Similarity=0.226 Sum_probs=109.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceechhH--HHHHHHhcCChhhHHHHHHhhcCCCCCHHHH-----------H
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGE--LLRREIASNSEYGTTILNTIKEGKIVPSEVT-----------V 74 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----------~ 74 (196)
+.++|+|+|++||||||+++.|+++++..+++.+. +..+. +.+++.+..+++++..+...+.... .
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~re-p~~t~~g~~ir~~l~~~~~~~~~~~llf~a~R~~~~~ 102 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTRE-PGGTRLGETLREILLNQPMDLETEALLMFAGRREHLA 102 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEES-SSSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecC-CCCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 34788999999999999999999998432111110 01112 2456778888888877643222211 1
Q ss_pred HHHHHHHhcCCCCcEEEeCCCCCH------------HHHHHHHHHh--CCCCcEEEEeecChHHHHHHHhhccC-CCCCC
Q 029287 75 SLIQKEMESSDSKKFLIDGFPRSE------------ENRAAFERIM--GAEPDIVLFFDCPEEEMVNRVLNRNE-GRVDD 139 (196)
Q Consensus 75 ~~i~~~l~~~~~~~~iid~~~~~~------------~~~~~~~~~~--~~~p~~~i~ld~~~~~~~~Rl~~r~~-~~~~~ 139 (196)
+.+...+. .+..+|+|+|..+. .....+.... .+.||++||||+|++++.+|+.+|.. ++.+.
T Consensus 103 ~~i~p~l~--~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~~dr~E~ 180 (227)
T 3v9p_A 103 LVIEPALA--RGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMPDKFES 180 (227)
T ss_dssp HTHHHHHH--TTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCCC---CC
T ss_pred HHHHHHHH--cCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccCccchhh
Confidence 22333343 36778999987542 1111222211 47899999999999999999998842 33333
Q ss_pred -cHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287 140 -NIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAAL 191 (196)
Q Consensus 140 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~ 191 (196)
+.+.+++....|..... . .+.++++||+++++++|.++|.+.+..|
T Consensus 181 ~~~ef~~rv~~~Y~~la~----~--~~~~~~vIDa~~s~eeV~~~I~~~l~~l 227 (227)
T 3v9p_A 181 ESDAFFARTRAEYLRRAQ----E--APHRFVIVDSSEPIAQIRKQLEGVLAAL 227 (227)
T ss_dssp HHHHHHHHHHHHHHHHHH----H--CTTTEEEEETTSCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHH----H--hcCCEEEEeCCCCHHHHHHHHHHHHHhC
Confidence 34555555566665421 1 2457999999999999999999888754
No 27
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.86 E-value=1.6e-20 Score=136.71 Aligned_cols=172 Identities=16% Similarity=0.266 Sum_probs=113.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCcee-chhHHHHHHHhcCChhhHHHHHHhhcC-----CCCCHH-----------
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHL-SAGELLRREIASNSEYGTTILNTIKEG-----KIVPSE----------- 71 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~----------- 71 (196)
.++|+++|++||||||+++.|++++....+ ++ .+. +. +.+++.+..+++++... ......
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v-~~~-re-p~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~ 79 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDM-VFT-RE-PGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARV 79 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCE-EEE-ES-SCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcc-eee-eC-CCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHH
Confidence 368888999999999999999999832211 11 111 11 34577888888888732 222221
Q ss_pred -HHHHHHHHHHhcCCCCcEEEeCCCCCHH------------HHHHHHHH--hCCCCcEEEEeecChHHHHHHHhhccC-C
Q 029287 72 -VTVSLIQKEMESSDSKKFLIDGFPRSEE------------NRAAFERI--MGAEPDIVLFFDCPEEEMVNRVLNRNE-G 135 (196)
Q Consensus 72 -~~~~~i~~~l~~~~~~~~iid~~~~~~~------------~~~~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~~r~~-~ 135 (196)
.+...+...+. .+..+|+|+|..+.. ....+... -.+.||++||||+|++++.+|+.+|.. +
T Consensus 80 ~~~~~~i~paL~--~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~~d 157 (213)
T 4tmk_A 80 QLVETVIKPALA--NGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELD 157 (213)
T ss_dssp HHHHHTHHHHHH--TTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHH--CCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCcc
Confidence 11123444444 467889999875421 11112221 256899999999999999999998842 3
Q ss_pred CCCC-cHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287 136 RVDD-NIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192 (196)
Q Consensus 136 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~ 192 (196)
+.+. +.+.+++..+.|..... ....+++||+++++++|+++|.+.+..++
T Consensus 158 r~E~~~~~f~~rv~~~y~~la~-------~~~~~~vIDa~~s~eeV~~~I~~~l~~~l 208 (213)
T 4tmk_A 158 RIEQESFDFFNRTRARYLELAA-------QDKSIHTIDATQPLEAVMDAIRTTVTHWV 208 (213)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHH-------TCTTEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHHH-------HCCcEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 4433 45566555566665521 22578999999999999999999888765
No 28
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.85 E-value=6.5e-20 Score=132.06 Aligned_cols=168 Identities=18% Similarity=0.271 Sum_probs=103.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh---CCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHH-------HHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY---GLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT-------VSLIQK 79 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~i~~ 79 (196)
|+|+|+|++||||||+++.|++.+ |+.++...+ +..++.+..+++.+..+...+.... ...+.+
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 74 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE 74 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC------CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999 988876532 3344556666766664433322111 112222
Q ss_pred HHhc--CCCCcEEEeCCCCC------------HHHHHHHH--HHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHH
Q 029287 80 EMES--SDSKKFLIDGFPRS------------EENRAAFE--RIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDT 143 (196)
Q Consensus 80 ~l~~--~~~~~~iid~~~~~------------~~~~~~~~--~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~ 143 (196)
+.. ..+..+++|+|..+ ......+. ......||.+|||++|++++.+|+.+| ++.+.. +.
T Consensus 75 -i~~~l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R--~~~~~~-~~ 150 (197)
T 2z0h_A 75 -IKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGEL--NRFEKR-EF 150 (197)
T ss_dssp -HTTC----CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC-----CCCCCH-HH
T ss_pred -HHHHHhCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCHHHHHHHHhcc--CcccHH-HH
Confidence 221 13456788876321 11111111 112457999999999999999999988 444444 55
Q ss_pred HHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287 144 VRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKL 193 (196)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~ 193 (196)
++.+...|..... ..+..+++||++++++++.+++.+.+.+++.
T Consensus 151 ~~~~~~~~~~~~~------~~~~~~~~Id~~~~~e~~~~~i~~~l~~~l~ 194 (197)
T 2z0h_A 151 LERVREGYLVLAR------EHPERIVVLDGKRSIEEIHRDVVREVKRRWK 194 (197)
T ss_dssp HHHHHHHHHHHHH------HCTTTEEEEETTSCHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHH------hCCCCEEEEeCCCCHHHHHHHHHHHHHHHhc
Confidence 5554555555421 1245688899999999999999988877653
No 29
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.84 E-value=2.7e-20 Score=137.38 Aligned_cols=173 Identities=14% Similarity=0.223 Sum_probs=108.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcC---CCCCHH-HH-----------
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEG---KIVPSE-VT----------- 73 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~-~~----------- 73 (196)
+++|+|+|++||||||+++.|++.++...++...+.+. +.+++.+..+++++..+ ...... ..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~~ 104 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTRE--PGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQLV 104 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecC--CCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999984322221112222 24677888888888632 222221 11
Q ss_pred HHHHHHHHhcCCCCcEEEeCCCCCH------------HHHHHHHHH--hCCCCcEEEEeecChHHHHHHHhhccC-CCCC
Q 029287 74 VSLIQKEMESSDSKKFLIDGFPRSE------------ENRAAFERI--MGAEPDIVLFFDCPEEEMVNRVLNRNE-GRVD 138 (196)
Q Consensus 74 ~~~i~~~l~~~~~~~~iid~~~~~~------------~~~~~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~~r~~-~~~~ 138 (196)
...+...+. .+..+|+|+|..+. .....+... -.+.||++||||+|++++.+|+.+|.. ++.+
T Consensus 105 ~~~I~paL~--~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~dr~E 182 (236)
T 3lv8_A 105 ENVIKPALA--RGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGELDRIE 182 (236)
T ss_dssp HHTHHHHHH--TTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----CCCTTT
T ss_pred HHHHHHHHH--cCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcchhh
Confidence 122333443 46788999976431 111122221 246899999999999999999998842 3433
Q ss_pred C-cHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287 139 D-NIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192 (196)
Q Consensus 139 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~ 192 (196)
. +.+.+++..+.|.... .....+++||+++++++|.++|.+.+..++
T Consensus 183 ~~~~~~~~rv~~~y~~la-------~~~~~~~vIDa~~sieeV~~~I~~~l~~~l 230 (236)
T 3lv8_A 183 KMDISFFERARERYLELA-------NSDDSVVMIDAAQSIEQVTADIRRALQDWL 230 (236)
T ss_dssp TSCHHHHHHHHHHHHHHH-------HHCTTEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH-------HHCCCEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 3 3555555556666542 112238899999999999999999887765
No 30
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.84 E-value=6.7e-19 Score=126.40 Aligned_cols=166 Identities=20% Similarity=0.310 Sum_probs=105.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh---CCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHH-------H----H
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY---GLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT-------V----S 75 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~----~ 75 (196)
|+|+|+|++||||||+++.|++++ |+.+++.++ ......+..+++.+..|...+.... . .
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~ 74 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEE 74 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999998 898888642 1223345556666555433222111 1 1
Q ss_pred HHHHHHhcCCCCcEEEeCCC----------CC--HHHHHHHHHH--hCCCCcEEEEeecChHHHHHHHhhccCCCCCCcH
Q 029287 76 LIQKEMESSDSKKFLIDGFP----------RS--EENRAAFERI--MGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNI 141 (196)
Q Consensus 76 ~i~~~l~~~~~~~~iid~~~----------~~--~~~~~~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~ 141 (196)
.+...+. .+..+++|+|. .. ..+...+... ....||.+|||++|++++.+|+.+| ++.+ ..
T Consensus 75 ~i~~~l~--~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r--~~~~-~~ 149 (195)
T 2pbr_A 75 KIIPDLK--RDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEK--NRFE-NK 149 (195)
T ss_dssp THHHHHH--TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTT--TCCC-CH
T ss_pred HHHHHHh--CCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhcc--Cccc-hH
Confidence 1222232 34567788543 22 1122222211 1237999999999999999999865 4433 44
Q ss_pred HHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287 142 DTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKL 193 (196)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~ 193 (196)
+..+.....|.... ..+ ..+++||++++++++.++|.+.+.++++
T Consensus 150 ~~~~~~~~~~~~~~----~~~---~~~~~Id~~~~~~~~~~~i~~~l~~~l~ 194 (195)
T 2pbr_A 150 EFLEKVRKGFLELA----KEE---ENVVVIDASGEEEEVFKEILRALSGVLR 194 (195)
T ss_dssp HHHHHHHHHHHHHH----HHS---TTEEEEETTSCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHH----hhC---CCEEEEECCCCHHHHHHHHHHHHHHHhC
Confidence 44444344455442 122 4678899999999999999998877654
No 31
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.84 E-value=1.5e-18 Score=128.01 Aligned_cols=175 Identities=17% Similarity=0.234 Sum_probs=108.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhCC--ceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHH-HHHHHHh-
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYGL--THLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVS-LIQKEME- 82 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~i~~~l~- 82 (196)
...++|+|+|++||||||+++.|++.++. .++.. ..+..++.+..+++++..+.........- .......
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~------~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~ 97 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT------REPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREH 97 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE------CTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee------cCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 35688999999999999999999999863 33322 12345567788888887765433221111 1111111
Q ss_pred --------cCCCCcEEEe----------CCCCC--HHHHHHHHHH--hCCCCcEEEEeecChHHHHHHHhhccC--CCCC
Q 029287 83 --------SSDSKKFLID----------GFPRS--EENRAAFERI--MGAEPDIVLFFDCPEEEMVNRVLNRNE--GRVD 138 (196)
Q Consensus 83 --------~~~~~~~iid----------~~~~~--~~~~~~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~~r~~--~~~~ 138 (196)
...+..+|+| +++.+ .....++... ....||++||||+|++++.+|+.+|.. ++.+
T Consensus 98 ~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr~e 177 (229)
T 4eaq_A 98 LVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLD 177 (229)
T ss_dssp CCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----CCC
T ss_pred HHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccchh
Confidence 0135678899 55543 2222222221 346899999999999999999998832 2332
Q ss_pred CcH-HHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287 139 DNI-DTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKL 193 (196)
Q Consensus 139 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~ 193 (196)
... +..++....|..... . .+..+++||++++++++.++|.+.+..++.
T Consensus 178 ~~~~~~~~rv~~~y~~l~~----~--~~~~~~vIDa~~s~eev~~~I~~~l~~~l~ 227 (229)
T 4eaq_A 178 QEDLKFHEKVIEGYQEIIH----N--ESQRFKSVNADQPLENVVEDTYQTIIKYLE 227 (229)
T ss_dssp HHHHHHHHHHHHHHHHHTT----T--CTTTEEEEETTSCHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHH----h--CCCCEEEEeCCCCHHHHHHHHHHHHHHHhc
Confidence 222 233333344554421 1 134788999999999999999999887653
No 32
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.83 E-value=4.1e-19 Score=125.17 Aligned_cols=151 Identities=14% Similarity=0.111 Sum_probs=98.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF 89 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~ 89 (196)
++|+|+|++||||||+++.|++.+|+.+++.+.+..... . ... .... ...+. .+..+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~----~----~~~------------~~~~-~~~l~--~~~~v 58 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS----G----NEK------------LFEH-FNKLA--DEDNV 58 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT----C----HHH------------HHHH-HHHHT--TCCSE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh----H----HHH------------HHHH-HHHHH--hCCCe
Confidence 588999999999999999999999999999887654321 0 000 0000 11111 23445
Q ss_pred EEeCCCC---------------CHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhc
Q 029287 90 LIDGFPR---------------SEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKAL 154 (196)
Q Consensus 90 iid~~~~---------------~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~ 154 (196)
++|++.. .......+.. ....|+.+|||++|++++.+|+.+| ++.....+.++.....|...
T Consensus 59 i~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~i~l~~~~e~~~~R~~~r--~r~~~~~~~~~~~~~~~~~~ 135 (173)
T 3kb2_A 59 IIDRFVYSNLVYAKKFKDYSILTERQLRFIED-KIKAKAKVVYLHADPSVIKKRLRVR--GDEYIEGKDIDSILELYREV 135 (173)
T ss_dssp EEESCHHHHHHHTTTBTTCCCCCHHHHHHHHH-HHTTTEEEEEEECCHHHHHHHHHHH--SCSCCCHHHHHHHHHHHHHH
T ss_pred EEeeeecchHHHHHHHHHhhHhhHHHHHHHhc-cCCCCCEEEEEeCCHHHHHHHHHhc--CCcchhhhHHHHHHHHHHHH
Confidence 5564331 1222223332 2247899999999999999999988 44444455555555566554
Q ss_pred hHhHHHHHHhcCcEEEEeCC-CCHhHHHHHHHHHHHhhh
Q 029287 155 NLPVINYYARRGKLYTINAV-GTVDEIFEQVRAVFAALK 192 (196)
Q Consensus 155 ~~~~~~~~~~~~~~~~I~~~-~~~~~v~~~i~~~i~~~~ 192 (196)
.. .+ ...+++||++ .+++++.++|.+.+.+..
T Consensus 136 ~~----~~--~~~~~~id~~~~~~~ev~~~I~~~~~~~~ 168 (173)
T 3kb2_A 136 MS----NA--GLHTYSWDTGQWSSDEIAKDIIFLVELEH 168 (173)
T ss_dssp HH----TC--SSCEEEEETTTSCHHHHHHHHHHHHHHGG
T ss_pred Hh----hc--CCCEEEEECCCCCHHHHHHHHHHHHhCCC
Confidence 21 12 2467889988 499999999998887753
No 33
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.83 E-value=4.2e-19 Score=128.52 Aligned_cols=161 Identities=16% Similarity=0.200 Sum_probs=105.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHH---HHHHHHHHHhcC
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEV---TVSLIQKEMESS 84 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~i~~~l~~~ 84 (196)
.+++|+|+|++||||||+++.|++.+|..+++.+++.... .......+....+.. ....+...+ .
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~----------~~~~~~~g~~~~~~~~~~~~~~l~~~~--~ 84 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPE----------NIRKMSEGIPLTDDDRWPWLAAIGERL--A 84 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHH----------HHHHHHHTCCCCHHHHHHHHHHHHHHH--T
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchh----------hHHHHhcCCCCCchhhHHHHHHHHHHH--h
Confidence 3578999999999999999999999999999988764211 001111122222211 122233333 2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHh
Q 029287 85 DSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYAR 164 (196)
Q Consensus 85 ~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (196)
.+..+|+|+.......+..+... ...|+.+|||++|++++.+|+.+|... ....+.+..+...+... ..
T Consensus 85 ~~~~vivd~~~~~~~~~~~l~~~-~~~~~~vi~l~~~~e~~~~Rl~~R~~~--~~~~~~~~~~~~~~~~~--------~~ 153 (202)
T 3t61_A 85 SREPVVVSCSALKRSYRDKLRES-APGGLAFVFLHGSESVLAERMHHRTGH--FMPSSLLQTQLETLEDP--------RG 153 (202)
T ss_dssp SSSCCEEECCCCSHHHHHHHHHT-STTCCEEEEEECCHHHHHHHHHHHHSS--CCCHHHHHHHHHHCCCC--------TT
T ss_pred cCCCEEEECCCCCHHHHHHHHHh-cCCCeEEEEEeCCHHHHHHHHHHhhcc--CCCHHHHHHHHHhcCCC--------CC
Confidence 35667899877666666655543 346678999999999999999998422 12344554444333322 12
Q ss_pred cCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287 165 RGKLYTINAVGTVDEIFEQVRAVFAAL 191 (196)
Q Consensus 165 ~~~~~~I~~~~~~~~v~~~i~~~i~~~ 191 (196)
....++||++++++++.++|.+.+...
T Consensus 154 ~~~~~~Id~~~~~~e~~~~I~~~l~~~ 180 (202)
T 3t61_A 154 EVRTVAVDVAQPLAEIVREALAGLARL 180 (202)
T ss_dssp STTEEEEESSSCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEeCCCCHHHHHHHHHHHHHHh
Confidence 235678999999999999998888654
No 34
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.83 E-value=4e-20 Score=135.20 Aligned_cols=172 Identities=16% Similarity=0.155 Sum_probs=98.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhCC-ceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHH--------HHH-
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYGL-THLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT--------VSL- 76 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~- 76 (196)
..+++|+++|++||||||+++.|++.++. ...++-.+ .++ +.+++.+..+++++........... .+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~-tre-P~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~~~ 96 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVL-TRE-PGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRREHF 96 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEE-EES-SCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEe-eeC-CCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 34688999999999999999999998754 22221000 111 2356777778887765322322111 112
Q ss_pred ---HHHHHhcCCCCcEEEeCCCCCHH------------HHHHHHHHhC-CCCcEEEEeecChHHHHHHHhhccCCCCCC-
Q 029287 77 ---IQKEMESSDSKKFLIDGFPRSEE------------NRAAFERIMG-AEPDIVLFFDCPEEEMVNRVLNRNEGRVDD- 139 (196)
Q Consensus 77 ---i~~~l~~~~~~~~iid~~~~~~~------------~~~~~~~~~~-~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~- 139 (196)
+...+. .+..+|+|+|..+.. ....+..... +.||++||||+|++++.+|+ ++ +|.+.
T Consensus 97 ~~~I~paL~--~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri-~r--dr~E~~ 171 (223)
T 3ld9_A 97 VKIIKPSLM--QKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRS-CK--NGYEFA 171 (223)
T ss_dssp HHTHHHHHH--TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC-------------------
T ss_pred HHHHHHHHh--cCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHh-cc--Cccccc
Confidence 333333 356789999875421 1122222222 68999999999999999999 44 44443
Q ss_pred cHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287 140 NIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192 (196)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~ 192 (196)
+.+.+++..+.|..... .+ +.++++||+++++++| ++|.+.+..++
T Consensus 172 ~~e~~~rv~~~y~~la~----~~--~~~~~vIDa~~sieeV-~~I~~~l~~~l 217 (223)
T 3ld9_A 172 DMEFYYRVRDGFYDIAK----KN--PHRCHVITDKSETYDI-DDINFVHLEVI 217 (223)
T ss_dssp CHHHHHHHHHHHHHHHH----HC--TTTEEEEESSCSSSCC-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH----HC--CCCEEEEcCCCCHHHH-HHHHHHHHHHH
Confidence 35555555556655522 22 3579999999999999 99998887754
No 35
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=99.82 E-value=2.9e-19 Score=130.22 Aligned_cols=175 Identities=16% Similarity=0.188 Sum_probs=115.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCC-CCCHHHH-----------HH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGK-IVPSEVT-----------VS 75 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~-----------~~ 75 (196)
+.++|+++|++||||||+++.|+++++... .+++ ....+++.|..+++++.... ....... .+
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~----~~~~-ep~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~ 78 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNC----KLLK-FPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVD 78 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSE----EEEE-SSCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccc----eEEE-ecCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence 347888899999999999999999998622 1112 22346778888888887643 2222111 12
Q ss_pred HHHHHHhcCCCCcEEEeCCCCCHHHHH-----------HHHHH--hCCCCcEEEEe-ecChHHHHHHHhhccCCCCCCcH
Q 029287 76 LIQKEMESSDSKKFLIDGFPRSEENRA-----------AFERI--MGAEPDIVLFF-DCPEEEMVNRVLNRNEGRVDDNI 141 (196)
Q Consensus 76 ~i~~~l~~~~~~~~iid~~~~~~~~~~-----------~~~~~--~~~~p~~~i~l-d~~~~~~~~Rl~~r~~~~~~~~~ 141 (196)
.+...+. .+..+|+|+|..+..... ++... ..+.||++||| |+|++++.+|+..+ .+|.+ ..
T Consensus 79 ~I~paL~--~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~-~dr~E-~~ 154 (216)
T 3tmk_A 79 KIKKDLL--EGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFG-DERYE-TV 154 (216)
T ss_dssp HHHHHHH--TTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSS-CCTTC-CH
T ss_pred HHHHHHH--cCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccC-ccccc-HH
Confidence 3334444 367889999876532211 11111 24689999999 99999999997644 24444 45
Q ss_pred HHHHHHHHHHHhchHhHHHHHHhcCcEEEEe-CCCCHhHHHHHHHHHHHhhhh
Q 029287 142 DTVRKRLQVFKALNLPVINYYARRGKLYTIN-AVGTVDEIFEQVRAVFAALKL 193 (196)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~-~~~~~~~v~~~i~~~i~~~~~ 193 (196)
+.+++..+.|......... ..+.++++|| +++++++|.++|.+.+...+.
T Consensus 155 ~f~~rvr~~Y~~la~~~~~--~~~~~~~vID~a~~s~eeV~~~I~~~i~~~l~ 205 (216)
T 3tmk_A 155 KFQEKVKQTFMKLLDKEIR--KGDESITIVDVTNKGIQEVEALIWQIVEPVLS 205 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHH--TTCCSEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccc--cCCCCEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 5555555667766432111 1356899999 899999999999998877654
No 36
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.80 E-value=1.2e-19 Score=132.24 Aligned_cols=171 Identities=16% Similarity=0.181 Sum_probs=104.4
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHH----------
Q 029287 6 GKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVS---------- 75 (196)
Q Consensus 6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---------- 75 (196)
+..+++|+|+|++||||||+++.|+++++..+++.+ +++. ...+.+.+..+++++..+...+......
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~-~~~~-~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK-HLYF-PNRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHM 84 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE-EEES-SCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE-EEec-CCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 345689999999999999999999999876655552 2221 1123445555666665444443321111
Q ss_pred -HHHHHHhcCCCCcEEEeCCCCCHHHHH--------HHHH---HhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHH
Q 029287 76 -LIQKEMESSDSKKFLIDGFPRSEENRA--------AFER---IMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDT 143 (196)
Q Consensus 76 -~i~~~l~~~~~~~~iid~~~~~~~~~~--------~~~~---~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~ 143 (196)
.+...+. .+..+|+|+|+.+..... .+.. .....||.+|||++|++++.+|+.+|. ++.+ .. .
T Consensus 85 ~~i~~~l~--~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~-~r~~-~~-~ 159 (212)
T 2wwf_A 85 NEIKSLLL--KGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGE-EIYE-KV-E 159 (212)
T ss_dssp HHHHHHHH--HTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTS-STTC-SH-H
T ss_pred HHHHHHHh--CCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCc-cccc-HH-H
Confidence 1222222 245788999875421110 1111 112479999999999999999987642 3322 33 3
Q ss_pred HHHHH-HHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287 144 VRKRL-QVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAAL 191 (196)
Q Consensus 144 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~ 191 (196)
+.+++ ..|.... ....+++||++++++++.++|.+.+..+
T Consensus 160 ~~~~~~~~~~~~~--------~~~~~~~Id~~~~~~~~~~~i~~~l~~~ 200 (212)
T 2wwf_A 160 TQKKIYETYKHFA--------HEDYWINIDATRKIEDIHNDIVKEVTKI 200 (212)
T ss_dssp HHHHHHHHGGGGT--------TCTTEEEEECSSCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHh--------ccCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence 33333 3344431 1446788999999999999998887654
No 37
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.79 E-value=1.2e-18 Score=125.97 Aligned_cols=168 Identities=14% Similarity=0.164 Sum_probs=97.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCC
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSK 87 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~ 87 (196)
.+.+|+|.|++||||||+++.|++.+|+.+++.++++..... ......+.+. +...........+.... ...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g--~~i~~~~~~~---~~~~~~~~e~~~l~~l~---~~~ 95 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFH--KTVGELFTER---GEAGFRELERNMLHEVA---EFE 95 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT--SCHHHHHHHH---HHHHHHHHHHHHHHHHT---TCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhC--CcHHHHHHhc---ChHHHHHHHHHHHHHHh---hcC
Confidence 346899999999999999999999999999999988765422 1111111110 00000111112222222 234
Q ss_pred cEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCC---CCcHHHHHHHHHHHHhchHhHHHH
Q 029287 88 KFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRV---DDNIDTVRKRLQVFKALNLPVINY 161 (196)
Q Consensus 88 ~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 161 (196)
.+|++ +.+.....+..+. .++.+|||++|++++.+|+..++..|. ..+.+.+.+++..+..... ..
T Consensus 96 ~~vi~~ggg~~~~~~~~~~l~-----~~~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~~~r~---~~ 167 (199)
T 3vaa_A 96 NVVISTGGGAPCFYDNMEFMN-----RTGKTVFLNVHPDVLFRRLRIAKQQRPILQGKEDDELMDFIIQALEKRA---PF 167 (199)
T ss_dssp SEEEECCTTGGGSTTHHHHHH-----HHSEEEEEECCHHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHHHHHH---HH
T ss_pred CcEEECCCcEEccHHHHHHHH-----cCCEEEEEECCHHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHHHHHH---HH
Confidence 55666 2333333333333 268899999999999999982222232 2233333333322222222 23
Q ss_pred HHhcCcEEEEeCCC-CHhHHHHHHHHHHHhhhh
Q 029287 162 YARRGKLYTINAVG-TVDEIFEQVRAVFAALKL 193 (196)
Q Consensus 162 ~~~~~~~~~I~~~~-~~~~v~~~i~~~i~~~~~ 193 (196)
|.. ..++||+++ +++++.++|.+.+.++++
T Consensus 168 y~~--ad~~Idt~~~s~ee~~~~I~~~l~~~l~ 198 (199)
T 3vaa_A 168 YTQ--AQYIFNADELEDRWQIESSVQRLQELLE 198 (199)
T ss_dssp HTT--SSEEEECCCCSSHHHHHHHHHHHHHHTT
T ss_pred Hhh--CCEEEECCCCCHHHHHHHHHHHHHHHhc
Confidence 333 335677765 899999999999887764
No 38
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.78 E-value=6e-18 Score=122.39 Aligned_cols=168 Identities=18% Similarity=0.200 Sum_probs=100.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHh-CCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHH-----------H
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNY-GLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTV-----------S 75 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----------~ 75 (196)
++++|+|+|++||||||+++.|++++ |+.+++.... ...++.+..+++.+..+......... .
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~-----~~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~ 77 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFP-----QRSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFAS 77 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESS-----CTTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecC-----CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999998 5766654211 01233455566666544333222110 1
Q ss_pred HHHHHHhcCCCCcEEEeCCCCCHHH--------HHHHHHH--hCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHH
Q 029287 76 LIQKEMESSDSKKFLIDGFPRSEEN--------RAAFERI--MGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVR 145 (196)
Q Consensus 76 ~i~~~l~~~~~~~~iid~~~~~~~~--------~~~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~ 145 (196)
.+...+. .+..+|+|+|+.+... ...+... ....||.+|||++|++++.+ +|..++.+ .. .+.
T Consensus 78 ~i~~~l~--~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~---~R~~d~~e-~~-~~~ 150 (204)
T 2v54_A 78 FIQEQLE--QGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR---NVGEEIYE-DV-TFQ 150 (204)
T ss_dssp HHHHHHH--TTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT---CCSSSTTC-CS-HHH
T ss_pred HHHHHHH--CCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh---hcCccccc-HH-HHH
Confidence 1222222 3467889998854211 1111111 12479999999999999887 34222222 22 233
Q ss_pred HHH-HHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287 146 KRL-QVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKL 193 (196)
Q Consensus 146 ~~~-~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~ 193 (196)
+++ ..|..... .....+++||++++++++.++|.+.+...+.
T Consensus 151 ~rl~~~y~~~~~------~~~~~~~~Id~~~~~~~v~~~i~~~l~~~l~ 193 (204)
T 2v54_A 151 QKVLQEYKKMIE------EGDIHWQIISSEFEEDVKKELIKNIVIEAIH 193 (204)
T ss_dssp HHHHHHHHHHHT------TCSSCEEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH------hCCCcEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence 333 33444311 1134678999999999999999988877653
No 39
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.78 E-value=2e-17 Score=118.45 Aligned_cols=165 Identities=15% Similarity=0.166 Sum_probs=95.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhC-----CceechhHHHHHHHh-cCChhhHHHHHHhhcCCCCCH--HHHH----HH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYG-----LTHLSAGELLRREIA-SNSEYGTTILNTIKEGKIVPS--EVTV----SL 76 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~-----~~~i~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~--~~~~----~~ 76 (196)
|++|+|+|++||||||+++.|+++++ +.+++.++.+++... .....+. +.. +...+. .... ..
T Consensus 1 M~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~ 75 (194)
T 1nks_A 1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDR---DEM--RKLSVEKQKKLQIDAAKG 75 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSH---HHH--TTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccch---hhh--hcCCHHHHHHHHHHHHHH
Confidence 36899999999999999999999997 778887888765442 1111110 000 011111 1111 11
Q ss_pred HHHHHhcCCCCcEEEeCCCCCHHH--------HHHHHHHhCCCCcEEEEeecChHHHHHH-Hhh--ccCCC-CCCcHHHH
Q 029287 77 IQKEMESSDSKKFLIDGFPRSEEN--------RAAFERIMGAEPDIVLFFDCPEEEMVNR-VLN--RNEGR-VDDNIDTV 144 (196)
Q Consensus 77 i~~~l~~~~~~~~iid~~~~~~~~--------~~~~~~~~~~~p~~~i~ld~~~~~~~~R-l~~--r~~~~-~~~~~~~~ 144 (196)
+...+....+..+|+|+++....+ ...+.. + .|+.+|||++|++++.+| +.+ | ++ .....+.+
T Consensus 76 i~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~-~--~~~~vi~l~~~~~~~~~rr~~~~~R--~~~~~~~~~~~ 150 (194)
T 1nks_A 76 IAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITE-I--NPSVIFLLEADPKIILSRQKRDTTR--NRNDYSDESVI 150 (194)
T ss_dssp HHHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHH-H--CCSEEEEEECCHHHHHHHHHHCTTT--CCCCCCSHHHH
T ss_pred HHHHhhccCCCEEEECCchhhccccccccCCCHHHHHh-c--CCCEEEEEeCCHHHHHHHHHhhccc--CCCCccCHHHH
Confidence 223331134567899987431111 122222 2 589999999999998866 666 5 33 22233322
Q ss_pred H---HHHHHHHhchHhHHHHHHhcCcEEEE-eCCCCHhHHHHHHHHHH
Q 029287 145 R---KRLQVFKALNLPVINYYARRGKLYTI-NAVGTVDEIFEQVRAVF 188 (196)
Q Consensus 145 ~---~~~~~~~~~~~~~~~~~~~~~~~~~I-~~~~~~~~v~~~i~~~i 188 (196)
. .....|... ...+. ...+++| |++++++++.++|.+.+
T Consensus 151 ~~~~~~~~~~~~~----~~~~~-~~~~~~I~d~~~~~e~v~~~I~~~l 193 (194)
T 1nks_A 151 LETINFARYAATA----SAVLA-GSTVKVIVNVEGDPSIAANEIIRSM 193 (194)
T ss_dssp HHHHHHHHHHHHH----HHHHH-TCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHhc-CCcEEEEeCCCCCHHHHHHHHHHHh
Confidence 2 112233322 22221 3567889 99999999999987764
No 40
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.78 E-value=2.6e-18 Score=125.24 Aligned_cols=175 Identities=18% Similarity=0.203 Sum_probs=96.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHH-----------H
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTV-----------S 75 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----------~ 75 (196)
.++++|+|+|++||||||+++.|+++++..+++...+ +. ...+.+.+..+++.+..+...+..... .
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~-~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 84 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL-RF-PERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVP 84 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE-ES-SCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe-eC-CCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3467999999999999999999999886444333111 10 011233444455555443333322111 1
Q ss_pred HHHHHHhcCCCCcEEEeCCCCCHHH---------HHHHHHH--hCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHH
Q 029287 76 LIQKEMESSDSKKFLIDGFPRSEEN---------RAAFERI--MGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTV 144 (196)
Q Consensus 76 ~i~~~l~~~~~~~~iid~~~~~~~~---------~~~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~ 144 (196)
.+...+. .+..+|+|++..+... ...+... ....|+.+|||++|++++.+|+.++ .++.+ ..+..
T Consensus 85 ~i~~~l~--~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~-~~~~~-~~~~~ 160 (215)
T 1nn5_A 85 LIKEKLS--QGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFG-HERYE-NGAFQ 160 (215)
T ss_dssp HHHHHHH--TTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC------CTTC-SHHHH
T ss_pred HHHHHHH--CCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccC-ccccc-hHHHH
Confidence 2223332 3456788976422110 1111111 1246899999999999999999643 23322 22222
Q ss_pred HHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287 145 RKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKL 193 (196)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~ 193 (196)
+.....|..... .....+++||++++++++.++|.+.+..++.
T Consensus 161 ~~~~~~~~~~~~------~~~~~~~~Id~~~~~e~~~~~i~~~l~~~l~ 203 (215)
T 1nn5_A 161 ERALRCFHQLMK------DTTLNWKMVDASKSIEAVHEDIRVLSEDAIA 203 (215)
T ss_dssp HHHHHHHHHHTT------CTTSCEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH------hCCCCEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence 222223333211 0134678899999999999999888877653
No 41
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.78 E-value=2.5e-17 Score=119.45 Aligned_cols=167 Identities=16% Similarity=0.208 Sum_probs=97.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCC-----CC--------------
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKI-----VP-------------- 69 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~-------------- 69 (196)
+++|+|+|++||||||+++.|++ +|+.+++.|++.+....++.+....+.+....... ..
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~ 80 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDED 80 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHH
Confidence 46899999999999999999988 89999999988766433332222222222211100 00
Q ss_pred ----HHHHHHHH----HHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcH
Q 029287 70 ----SEVTVSLI----QKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNI 141 (196)
Q Consensus 70 ----~~~~~~~i----~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~ 141 (196)
....++.+ .+.+.......+|+++....... +....|.+|||++|++++.+|+.+|. ..+.
T Consensus 81 ~~~l~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~-------~~~~~d~vi~l~~~~e~~~~Rl~~R~----~~~~ 149 (206)
T 1jjv_A 81 KLWLNNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENK-------LTALCDRILVVDVSPQTQLARSAQRD----NNNF 149 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTT-------CGGGCSEEEEEECCHHHHHHHHC---------CH
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcC-------cHhhCCEEEEEECCHHHHHHHHHHcC----CCCH
Confidence 01112222 22222223346677763221111 12246899999999999999999873 2245
Q ss_pred HHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHh----HHHHHHHHHHHhhhh
Q 029287 142 DTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVD----EIFEQVRAVFAALKL 193 (196)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~----~v~~~i~~~i~~~~~ 193 (196)
+.+.+++... .+....+.. .. ++|+++++++ ++.+++.+.+.++..
T Consensus 150 e~~~~r~~~q----~~~~~~~~~-ad-~vIdn~~~~~~~~~~~~~~i~~~~~~~~~ 199 (206)
T 1jjv_A 150 EQIQRIMNSQ----VSQQERLKW-AD-DVINNDAELAQNLPHLQQKVLELHQFYLQ 199 (206)
T ss_dssp HHHHHHHHHS----CCHHHHHHH-CS-EEEECCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc----CChHHHHHh-CC-EEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 5555554431 122222322 23 5788888999 999999888877654
No 42
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.78 E-value=7.4e-18 Score=121.80 Aligned_cols=169 Identities=22% Similarity=0.198 Sum_probs=110.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcC-----CCCCH------------
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEG-----KIVPS------------ 70 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~------------ 70 (196)
.+.-|+|+|..||||||+++.|++ +|+++++.|.+.++...++.+....+.+..... ..++.
T Consensus 8 ~~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~ 86 (210)
T 4i1u_A 8 HMYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDED 86 (210)
T ss_dssp SCCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHH
Confidence 456899999999999999999998 899999999999887777766555555544321 12221
Q ss_pred ------HHHHHHHHHHHh----cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCc
Q 029287 71 ------EVTVSLIQKEME----SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDN 140 (196)
Q Consensus 71 ------~~~~~~i~~~l~----~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~ 140 (196)
..+++.+.+.+. ......+++|- |.-.+. ..+...+|.+|++++|+++..+|+.+|+ ..+
T Consensus 87 ~~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~-pLL~E~-----~~~~~~~D~vi~V~ap~e~r~~Rl~~Rd----g~s 156 (210)
T 4i1u_A 87 ARRRLEAITHPLIRAETEREARDAQGPYVIFVV-PLLVES-----RNWKARCDRVLVVDCPVDTQIARVMQRN----GFT 156 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEEC-TTCTTC-----HHHHHHCSEEEEEECCHHHHHHHHHHHH----CCC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEE-eccccc-----CCccccCCeEEEEECCHHHHHHHHHhcC----CCC
Confidence 133444444443 22334556664 321110 1111247999999999999999999984 335
Q ss_pred HHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCC-CCHhHHHHHHHHHHHhhhh
Q 029287 141 IDTVRKRLQVFKALNLPVINYYARRGKLYTINAV-GTVDEIFEQVRAVFAALKL 193 (196)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~-~~~~~v~~~i~~~i~~~~~ 193 (196)
.+.+.+++....+. .+. ...+. ++|+++ ++.+++.+++...+.+++.
T Consensus 157 ~eea~~ri~~Q~~~----eek-~~~AD-~VIdN~~gsle~l~~qV~~l~~~~~~ 204 (210)
T 4i1u_A 157 REQVEAIIARQATR----EAR-LAAAD-DVIVNDAATPDALAVQVDALHQRYLA 204 (210)
T ss_dssp HHHHHHHHHHSCCH----HHH-HHTCS-EEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCh----HHH-HHhCC-EEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 56666555432221 111 12223 468888 9999999999988877654
No 43
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.77 E-value=2e-17 Score=120.20 Aligned_cols=168 Identities=16% Similarity=0.214 Sum_probs=94.7
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCc--eec----hhHHHHHHHhcCChhhHHHHHHhhcCC---CCCHH--------
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLT--HLS----AGELLRREIASNSEYGTTILNTIKEGK---IVPSE-------- 71 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~--~i~----~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~-------- 71 (196)
+++|+|+|++||||||+++.|+++++.. ++. .++.+++ .+..+. .....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~i~~--------------~~~~~~~~~~~~~~~~~~~~~~ 69 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHD--------------IIKEAKKKDLLTPLTFSLIHAT 69 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCHHHH--------------HHHHHTTTSCCCHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHHHHH--------------HHhccccccCCCHHHHHHHHHH
Confidence 4789999999999999999999999763 332 2222222 221111 01110
Q ss_pred ----HHHHHHHHHHhcCCCCcEEEeCCCCCHHHHH--------HHHHH--hCCCCcEEEEeecChHHHHHHHh-hccC-C
Q 029287 72 ----VTVSLIQKEMESSDSKKFLIDGFPRSEENRA--------AFERI--MGAEPDIVLFFDCPEEEMVNRVL-NRNE-G 135 (196)
Q Consensus 72 ----~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~--------~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~-~r~~-~ 135 (196)
.....+...+. .+..+|+|+|+.+..... .+... ....|+++|||++|++++.+|+. +|.. .
T Consensus 70 ~r~~~~~~~i~~~l~--~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~~~~ 147 (213)
T 2plr_A 70 DFSDRYERYILPMLK--SGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRKIK 147 (213)
T ss_dssp HHHHHHHHTHHHHHH--TTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHh--CCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccc
Confidence 00011222222 356789999876532111 11111 23469999999999999999998 6631 1
Q ss_pred CCCC------cHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287 136 RVDD------NIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKL 193 (196)
Q Consensus 136 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~ 193 (196)
+... ..+.++.. ..|..........+.+...+++||++++++++.++|.+.+..++.
T Consensus 148 ~~~~g~~~~~~~d~~e~~-~~~~~r~~~~~~~~~~~~~~~~Id~~~~~e~v~~~I~~~l~~~~~ 210 (213)
T 2plr_A 148 PQEAGADIFPGLSPEEGF-LKYQGLITEVYDKLVKDENFIVIDGTKTPKEIQIQIRKFVGELID 210 (213)
T ss_dssp TTTTTTTTCTTSCHHHHH-HHHHHHHHHHHHHHTTTTTCEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhH-HHHHHHHHHHHHHHHhhCCEEEEECCCCHHHHHHHHHHHHHHHhh
Confidence 2000 00001111 122222121122222222678899999999999999998877654
No 44
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.77 E-value=2.3e-16 Score=111.48 Aligned_cols=164 Identities=12% Similarity=0.151 Sum_probs=93.6
Q ss_pred CcccCCCCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCH-------HHH
Q 029287 1 MQVKGGKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPS-------EVT 73 (196)
Q Consensus 1 m~~~~~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~ 73 (196)
|++... .+.+|+|+|++||||||+++.|++.+|..+++.+++.+.. .+... ..+....+ ...
T Consensus 1 m~~~~~-~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~---------~~~~~-~~g~~~~~~~~~~~~~~~ 69 (175)
T 1knq_A 1 MSTTNH-DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRR---------NIEKM-ASGEPLNDDDRKPWLQAL 69 (175)
T ss_dssp --CCCT-TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHH---------HHHHH-HTTCCCCHHHHHHHHHHH
T ss_pred CCccCC-CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchH---------HHHHh-hcCcCCCccccccHHHHH
Confidence 644433 3478999999999999999999999999999987763210 00000 01111111 011
Q ss_pred HHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCc-EEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHH
Q 029287 74 VSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPD-IVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFK 152 (196)
Q Consensus 74 ~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~-~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~ 152 (196)
...+...+. .+..+|++.-......+..+.. ..++ .+|||++|++++.+|+.+|. ........++.+...+.
T Consensus 70 ~~~~~~~~~--~~~~~vi~~~~~~~~~~~~l~~---~~~~~~vv~l~~~~e~~~~R~~~R~--~~~~~~~~~~~~~~~~~ 142 (175)
T 1knq_A 70 NDAAFAMQR--TNKVSLIVCSALKKHYRDLLRE---GNPNLSFIYLKGDFDVIESRLKARK--GHFFKTQMLVTQFETLQ 142 (175)
T ss_dssp HHHHHHHHH--HCSEEEEECCCCSHHHHHHHHT---TCTTEEEEEEECCHHHHHHHHHTST--TCCCCHHHHHHHHHHCC
T ss_pred HHHHHHHHh--cCCcEEEEeCchHHHHHHHHHh---cCCCEEEEEEECCHHHHHHHHHhcc--CCCCchHHHHHHHHhhh
Confidence 122222222 2346778743233333333322 1245 68999999999999999883 22223444443332222
Q ss_pred hchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287 153 ALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFA 189 (196)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~ 189 (196)
.. +|. ....++||++++++++.++|.+.+.
T Consensus 143 ~~------~~~-~~~~~~Id~~~~~~~~~~~i~~~l~ 172 (175)
T 1knq_A 143 EP------GAD-ETDVLVVDIDQPLEGVVASTIEVIK 172 (175)
T ss_dssp CC------CTT-CTTEEEEECSSCHHHHHHHHHHHHH
T ss_pred Cc------ccC-CCCeEEEeCCCCHHHHHHHHHHHHh
Confidence 11 011 2246789999999999999887664
No 45
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.76 E-value=8.1e-18 Score=120.64 Aligned_cols=122 Identities=13% Similarity=0.168 Sum_probs=73.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCC
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDS 86 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~ 86 (196)
+.+++|+|+|++||||||+++.|++.+|+.+++.+.+..................+.. .........+...+. .+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~--~g 77 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGA---TAIMMLYHTAATILQ--SG 77 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHHH---HHHHHHHHHHHHHHH--TT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccchHHHHHhhH---HHHHHHHHHHHHHHh--CC
Confidence 3568999999999999999999999999999998766433221100001000000000 000111122333333 35
Q ss_pred CcEEEeCCCCCHHHHHHHH--HHhCCCCcEEEEeecChHHHHHHHhhcc
Q 029287 87 KKFLIDGFPRSEENRAAFE--RIMGAEPDIVLFFDCPEEEMVNRVLNRN 133 (196)
Q Consensus 87 ~~~iid~~~~~~~~~~~~~--~~~~~~p~~~i~ld~~~~~~~~Rl~~r~ 133 (196)
..+|+|++.........+. ......|+.+|||++|++++.+|+.+|.
T Consensus 78 ~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~ 126 (193)
T 2rhm_A 78 QSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRI 126 (193)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHH
T ss_pred CeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhc
Confidence 6788998873221212221 1124568899999999999999999874
No 46
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.76 E-value=2.3e-17 Score=120.66 Aligned_cols=168 Identities=21% Similarity=0.242 Sum_probs=99.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhc-----CCCCCHH-----------
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE-----GKIVPSE----------- 71 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~----------- 71 (196)
.+++|+|+|++||||||+++.|++ +|+.+++.|++.+....++......+.+.... ...+...
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~ 81 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE 81 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence 468999999999999999999998 89999999988876543333333334333211 1111111
Q ss_pred -------HHHHHHH----HHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCc
Q 029287 72 -------VTVSLIQ----KEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDN 140 (196)
Q Consensus 72 -------~~~~~i~----~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~ 140 (196)
...+.+. ..+.......++++. +...... +...||.+|||++|++++.+|+.+|. ..+
T Consensus 82 ~~~~l~~~~~p~v~~~~~~~~~~~~~~~vi~~~-~~l~~~~------~~~~~d~vi~l~~~~e~~~~Rl~~R~----~~~ 150 (218)
T 1vht_A 82 EKNWLNALLHPLIQQETQHQIQQATSPYVLWVV-PLLVENS------LYKKANRVLVVDVSPETQLKRTMQRD----DVT 150 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEC-TTTTTTT------GGGGCSEEEEEECCHHHHHHHHHHHH----TCC
T ss_pred HHHHHHHhHCHHHHHHHHHHHHhcCCCEEEEEe-eeeeccC------ccccCCEEEEEECCHHHHHHHHHHcC----CCC
Confidence 1112221 112211233444554 3221111 12358999999999999999999873 123
Q ss_pred HHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287 141 IDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKL 193 (196)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~ 193 (196)
.+.+.++... . .....+. .... ++||++++++++.++|.+.+..++.
T Consensus 151 ~~~~~~~~~~---~-~~~~~~~-~~ad-~vId~~~~~~~~~~~I~~~l~~~~~ 197 (218)
T 1vht_A 151 REHVEQILAA---Q-ATREARL-AVAD-DVIDNNGAPDAIASDVARLHAHYLQ 197 (218)
T ss_dssp HHHHHHHHHH---S-CCHHHHH-HHCS-EEEECSSCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---c-CChHHHH-HhCC-EEEECCCCHHHHHHHHHHHHHHHHH
Confidence 4444444332 1 1111111 1222 5788888999999999888877654
No 47
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.76 E-value=5.8e-18 Score=121.19 Aligned_cols=172 Identities=14% Similarity=0.186 Sum_probs=93.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhC-----CceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHh-
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYG-----LTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEME- 82 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~- 82 (196)
+++|+|+|++||||||+++.|+++++ +.+++.++++++........ ....+.... ...........+.+.+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~i~~ 80 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLV-SDRDQMRKM-DPETQKRIQKMAGRKIAE 80 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSC-SSGGGGSSC-CHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCC-CCHHHHhcC-CHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999998 89999988887653221100 000000000 00000111111112121
Q ss_pred cCCCCcEEEeCCCCC--HHHH-----HHHHHHhCCCCcEEEEeecChHHHHH-HHhh--ccCCCCCCcHHHHHHHHHHHH
Q 029287 83 SSDSKKFLIDGFPRS--EENR-----AAFERIMGAEPDIVLFFDCPEEEMVN-RVLN--RNEGRVDDNIDTVRKRLQVFK 152 (196)
Q Consensus 83 ~~~~~~~iid~~~~~--~~~~-----~~~~~~~~~~p~~~i~ld~~~~~~~~-Rl~~--r~~~~~~~~~~~~~~~~~~~~ 152 (196)
......+|+|+.+.. .... ..+.... .|+++|||++|++++.+ |+.. | ++...+.+.+..+...+.
T Consensus 81 ~~~~~~viid~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~~~~~~~~rRl~~~~R--~r~~~~~~~~~~~~~~~~ 156 (192)
T 1kht_A 81 MAKESPVAVDTHSTVSTPKGYLPGLPSWVLNEL--NPDLIIVVETTGDEILMRRMSDETR--VRDLDTASTIEQHQFMNR 156 (192)
T ss_dssp HHTTSCEEEECCSEEEETTEEEESSCHHHHHHH--CCSEEEEEECCHHHHHHHHHTSSSC--SSSCCCHHHHHHHHHHHH
T ss_pred hccCCeEEEccceeccccccccccCcHHHHhcc--CCCEEEEEeCCHHHHHHHHhhhccc--CCCcCCHHHHHHHHHHHH
Confidence 112456889986531 1000 0111112 48899999999999996 8877 5 444444444433222222
Q ss_pred hchHhHHHHHHhcCcEEEE-eCCCCHhHHHHHHHHHH
Q 029287 153 ALNLPVINYYARRGKLYTI-NAVGTVDEIFEQVRAVF 188 (196)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~I-~~~~~~~~v~~~i~~~i 188 (196)
.. ......+. ...+++| +.+++++++.++|.+.+
T Consensus 157 ~~-~~~~~~~~-~~~~~~i~~~~~~~e~~~~~i~~~i 191 (192)
T 1kht_A 157 CA-AMSYGVLT-GATVKIVQNRNGLLDQAVEELTNVL 191 (192)
T ss_dssp HH-HHHHHHHH-CCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HH-HHHHHHhc-CCcEEEEeCCCCCHHHHHHHHHHHh
Confidence 22 11122222 2345555 44466999999887765
No 48
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.76 E-value=2.9e-17 Score=115.79 Aligned_cols=161 Identities=13% Similarity=0.150 Sum_probs=91.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCc
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKK 88 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~ 88 (196)
+++|+|+|++||||||+++.|++.+|+.+++.|+++++.. +......+.. .+...... ....+...+. ...
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~--g~~~~~~~~~---~~~~~~~~-~~~~~~~~l~---~~~ 72 (173)
T 1e6c_A 2 TEPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTS--GMTVADVVAA---EGWPGFRR-RESEALQAVA---TPN 72 (173)
T ss_dssp CCCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH--CSCHHHHHHH---HHHHHHHH-HHHHHHHHHC---CSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHh--CCCHHHHHHH---cCHHHHHH-HHHHHHHHhh---cCC
Confidence 4689999999999999999999999999999988876642 1111111100 00000011 1111222232 233
Q ss_pred EEEe-C--CCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHh--hccCCCCCCcHHHHHHHHHHHHhchHhHHHHHH
Q 029287 89 FLID-G--FPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVL--NRNEGRVDDNIDTVRKRLQVFKALNLPVINYYA 163 (196)
Q Consensus 89 ~iid-~--~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (196)
+|++ + .+.....+..+. .++.+|||++|++++.+|+. +|..++.....+...+++..+..... ..+.
T Consensus 73 ~vi~~g~~~~~~~~~~~~l~-----~~~~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~---~~~~ 144 (173)
T 1e6c_A 73 RVVATGGGMVLLEQNRQFMR-----AHGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLRERE---ALYQ 144 (173)
T ss_dssp EEEECCTTGGGSHHHHHHHH-----HHSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHH---HHHH
T ss_pred eEEECCCcEEeCHHHHHHHH-----cCCeEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHH---HHHH
Confidence 4554 3 222223333332 25899999999999999998 66223333332222333322222211 1222
Q ss_pred hcCcEEEEeCC-CCHhHHHHHHHHHH
Q 029287 164 RRGKLYTINAV-GTVDEIFEQVRAVF 188 (196)
Q Consensus 164 ~~~~~~~I~~~-~~~~~v~~~i~~~i 188 (196)
. ..++||++ .+++++.++|.+.+
T Consensus 145 ~--~~~~Id~~~~~~~~~~~~i~~~l 168 (173)
T 1e6c_A 145 D--VAHYVVDATQPPAAIVCELMQTM 168 (173)
T ss_dssp H--HCSEEEETTSCHHHHHHHHHHHT
T ss_pred h--CcEEEECCCCCHHHHHHHHHHHh
Confidence 2 23578877 79999998887665
No 49
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.76 E-value=3.5e-17 Score=124.17 Aligned_cols=169 Identities=18% Similarity=0.230 Sum_probs=103.3
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhc-----CCCCCH----------
Q 029287 6 GKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE-----GKIVPS---------- 70 (196)
Q Consensus 6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~---------- 70 (196)
++.|++|+|+|++||||||+++.|+ .+|+.+++.|++.++...++.+....+.+.... ...+..
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~ 150 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGN 150 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCC
Confidence 3567899999999999999999999 579999999999876655444433333222211 000110
Q ss_pred --------HHHHHHH----HHHHh---cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCC
Q 029287 71 --------EVTVSLI----QKEME---SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEG 135 (196)
Q Consensus 71 --------~~~~~~i----~~~l~---~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~ 135 (196)
...++.+ .+.+. ......+|+++...... .+...+|.+|||++|++++.+|+.+|. +
T Consensus 151 ~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~-------~~~~~~d~vI~l~a~~ev~~~Rl~~R~-g 222 (281)
T 2f6r_A 151 KKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEA-------GWQSMVHEVWTVVIPETEAVRRIVERD-G 222 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTT-------TGGGGCSEEEEEECCHHHHHHHHHHHH-C
T ss_pred HHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhcc-------chHHhCCEEEEEcCCHHHHHHHHHHcC-C
Confidence 0111111 11111 12235688888643211 112247899999999999999999884 2
Q ss_pred CCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287 136 RVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192 (196)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~ 192 (196)
.+.+.+.+++... .+...++ .... ++|+++++++++.++|.+.+..+.
T Consensus 223 ---~s~e~~~~ri~~q----~~~~~~~-~~AD-~vIdn~~s~eel~~~I~~~l~~l~ 270 (281)
T 2f6r_A 223 ---LSEAAAQSRLQSQ----MSGQQLV-EQSN-VVLSTLWESHVTQSQVEKAWNLLQ 270 (281)
T ss_dssp ---CCHHHHHHHHHTS----CCHHHHH-HTCS-EEEECSSCHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHc----CChHhhH-hhCC-EEEECCCCHHHHHHHHHHHHHHHH
Confidence 2344444443332 1112222 2233 568888899999999998887664
No 50
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.75 E-value=5.5e-17 Score=115.01 Aligned_cols=161 Identities=20% Similarity=0.250 Sum_probs=89.7
Q ss_pred ceEEEEEcCCCCChHHHHHHHHH-HhCCceechhHHHHHHHhcCCh-----hhHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVK-NYGLTHLSAGELLRREIASNSE-----YGTTILNTIKEGKIVPSEVTVSLIQKEME 82 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~-~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~i~~~l~ 82 (196)
|++|+|.|+|||||||+++.|++ .+|+.+++.+. ++......+. ........ ........+...+.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~-~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~ 73 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDD-YRQSIMAHEERDEYKYTKKKEGI-------VTGMQFDTAKSILY 73 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHH-HHHHHTTSCCGGGCCCCHHHHHH-------HHHHHHHHHHHHHT
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHH-HHHHhhCCCccchhhhchhhhhH-------HHHHHHHHHHHHHh
Confidence 57899999999999999999999 68999999854 4443332111 10000000 01122344455552
Q ss_pred c-CCCCcEEEeCCCCCHHHHHHHHHHh--CCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHH
Q 029287 83 S-SDSKKFLIDGFPRSEENRAAFERIM--GAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVI 159 (196)
Q Consensus 83 ~-~~~~~~iid~~~~~~~~~~~~~~~~--~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (196)
. ..+..+|+|+++.+..++..+.... ...+..+|||++|++++.+|+.+|.. ...+.+.+.++...|.....
T Consensus 74 ~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~--~~~~~~~i~~~~~~~~~~~~--- 148 (181)
T 1ly1_A 74 GGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT--KAVPIDVLRSMYKSMREYLG--- 148 (181)
T ss_dssp SCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGG--GCCCHHHHHHHHHHHHHHHT---
T ss_pred hccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhcccc--CCCCHHHHHHHHHHhhccCC---
Confidence 2 3467889999988876655554322 11345689999999999999998842 23467777777777766521
Q ss_pred HHHHhcCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287 160 NYYARRGKLYTINAVGTVDEIFEQVRAVFA 189 (196)
Q Consensus 160 ~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~ 189 (196)
. ..++||++.+ +++...+...+.
T Consensus 149 -----~-~~~~id~~~~-~~v~~~i~~~l~ 171 (181)
T 1ly1_A 149 -----L-PVYNGTPGKP-KAVIFDVDGTLA 171 (181)
T ss_dssp -----C-CCC--------------------
T ss_pred -----C-CccccCCCCC-ceeeehhhhhhh
Confidence 1 1233676654 667776665553
No 51
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.74 E-value=9.7e-17 Score=115.91 Aligned_cols=167 Identities=14% Similarity=0.183 Sum_probs=90.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechh----HHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAG----ELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSD 85 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~ 85 (196)
++|+|+|++||||||+++.|+++++..++... .+++... .. .........+ ...............
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~-~~-~~~~~~~~~~--------~~~~~r~~~~~~~~~ 70 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYY-KD-LKKTVFKMQI--------YMLTARSKQLKQAKN 70 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHT-TC-HHHHHHHHHH--------HHHHHHHHHHC----
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHH-hC-ccccchhHHH--------HHHHHHHHHHHHhhc
Confidence 47899999999999999999999998665421 1111110 00 0000000000 000011111111111
Q ss_pred CCcEEEeCCCCCHHHH---------------HHH---HH-H---h------CCCCcEEEEeecChHHHHHHHhhccCCCC
Q 029287 86 SKKFLIDGFPRSEENR---------------AAF---ER-I---M------GAEPDIVLFFDCPEEEMVNRVLNRNEGRV 137 (196)
Q Consensus 86 ~~~~iid~~~~~~~~~---------------~~~---~~-~---~------~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~ 137 (196)
...+|+|+++.+.... ..+ .. . + ...|+.+|||++|++++.+|+.+| +|.
T Consensus 71 ~~~vi~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R--~r~ 148 (205)
T 2jaq_A 71 LENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKR--GRS 148 (205)
T ss_dssp --CEEEESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHH--TCH
T ss_pred cCCEEEEeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHc--CCh
Confidence 2348899988652111 111 01 1 1 257999999999999999999887 332
Q ss_pred CCc---HHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287 138 DDN---IDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192 (196)
Q Consensus 138 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~ 192 (196)
... .+..+.....|.. ....|......++||++++++++.++|.+.+..+.
T Consensus 149 ~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~Id~~~~~~~v~~~I~~~l~~~~ 202 (205)
T 2jaq_A 149 EELLIGEEYWETLNKNYEE----FYKQNVYDFPFFVVDAELDVKTQIELIMNKLNSIK 202 (205)
T ss_dssp HHHHSCHHHHHHHHHHHHH----HHHHHTTTSCEEEEETTSCHHHHHHHHHHHHHHC-
T ss_pred hhhcCcHHHHHHHHHHHHH----HHHHccccCcEEEEECCCCHHHHHHHHHHHHHHhc
Confidence 111 1222211222322 23333324567889999999999999998887654
No 52
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.74 E-value=2.7e-17 Score=115.46 Aligned_cols=157 Identities=15% Similarity=0.245 Sum_probs=91.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCCCc
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE-GKIVPSEVTVSLIQKEMESSDSKK 88 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~i~~~l~~~~~~~ 88 (196)
|+|+|+|++||||||+++.|++.+|+.+++.+++.+.... . .+.+.+.. +..... .....+...+.. ...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~g--~----~~~~~~~~~~~~~~~-~~~~~~l~~l~~--~~~ 71 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKREG--L----SIPQIFEKKGEAYFR-KLEFEVLKDLSE--KEN 71 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT--S----CHHHHHHHSCHHHHH-HHHHHHHHHHTT--SSS
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHcC--C----CHHHHHHHhChHHHH-HHHHHHHHHHhc--cCC
Confidence 4789999999999999999999999999999888766432 1 12222211 111111 111222223331 334
Q ss_pred EEEe-CC--CCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCc--HHHHHHHHHHHHhchHhHHHHHH
Q 029287 89 FLID-GF--PRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDN--IDTVRKRLQVFKALNLPVINYYA 163 (196)
Q Consensus 89 ~iid-~~--~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 163 (196)
+|++ +. +.....+..+. .++.+|||++|++++.+|+.+|. .|.... .+.+.+ .|... ...+.
T Consensus 72 ~Vi~~g~~~~~~~~~~~~l~-----~~~~~i~l~~~~e~~~~R~~~r~-~r~~~~~~~~~i~~---~~~~~----~~~~~ 138 (168)
T 2pt5_A 72 VVISTGGGLGANEEALNFMK-----SRGTTVFIDIPFEVFLERCKDSK-ERPLLKRPLDEIKN---LFEER----RKIYS 138 (168)
T ss_dssp EEEECCHHHHTCHHHHHHHH-----TTSEEEEEECCHHHHHHHCBCTT-CCBGGGSCGGGTHH---HHHHH----HHHHT
T ss_pred eEEECCCCEeCCHHHHHHHH-----cCCEEEEEECCHHHHHHHHhCCC-CCCCCcchHHHHHH---HHHHH----HHHHH
Confidence 5554 31 12222222221 37899999999999999998763 232211 112222 23222 11233
Q ss_pred hcCcEEEEeCCCCHhHHHHHHHHHHHh
Q 029287 164 RRGKLYTINAVGTVDEIFEQVRAVFAA 190 (196)
Q Consensus 164 ~~~~~~~I~~~~~~~~v~~~i~~~i~~ 190 (196)
. ..+.+ +++.+++++.++|.+.+.+
T Consensus 139 ~-~~~~i-~~~~~~~~~~~~i~~~l~~ 163 (168)
T 2pt5_A 139 K-ADIKV-KGEKPPEEVVKEILLSLEG 163 (168)
T ss_dssp T-SSEEE-ECSSCHHHHHHHHHHHHHT
T ss_pred h-CCEEE-CCCCCHHHHHHHHHHHHHh
Confidence 3 45555 7778999999998887753
No 53
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.74 E-value=2.6e-16 Score=113.63 Aligned_cols=158 Identities=17% Similarity=0.174 Sum_probs=94.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHH-------HHHHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSE-------VTVSLIQKEM 81 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~i~~~l 81 (196)
+.+|+|+|++||||||+++.|+..+|..+++.+++..... . .....+....+. .....+...+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~---------~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 98 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPEN---------I-ATMQRGIPLTDEDRWPWLRSLAEWMDARA 98 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHH---------H-HHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHH---------H-HHHhcCCCCCCcccccHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999876632100 0 001111111111 1112222222
Q ss_pred hcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHH
Q 029287 82 ESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINY 161 (196)
Q Consensus 82 ~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (196)
. .+..+|++........+..+... . .+..+|||++|++++.+|+.+|.. .....+.+..+...+...
T Consensus 99 ~--~g~~viid~~~~~~~~~~~l~~~-~-~~~~vv~l~~~~e~l~~Rl~~R~~--~~~~~~~l~~~~~~~~~~------- 165 (200)
T 4eun_A 99 D--AGVSTIITCSALKRTYRDVLREG-P-PSVDFLHLDGPAEVIKGRMSKREG--HFMPASLLQSQLATLEAL------- 165 (200)
T ss_dssp H--TTCCEEEEECCCCHHHHHHHTTS-S-SCCEEEEEECCHHHHHHHHTTCSC--CSSCGGGHHHHHHHCCCC-------
T ss_pred h--cCCCEEEEchhhhHHHHHHHHHh-C-CceEEEEEeCCHHHHHHHHHhccc--CCCCHHHHHHHHHHhCCC-------
Confidence 2 23456777654444444433322 1 355779999999999999988842 222334444333322222
Q ss_pred HHhcCcEEEEeCCCCHhHHHHHHHHHHHh
Q 029287 162 YARRGKLYTINAVGTVDEIFEQVRAVFAA 190 (196)
Q Consensus 162 ~~~~~~~~~I~~~~~~~~v~~~i~~~i~~ 190 (196)
| .....++||++++++++.++|.+.+..
T Consensus 166 ~-~~~~~~~Id~~~~~~e~~~~I~~~l~~ 193 (200)
T 4eun_A 166 E-PDESGIVLDLRQPPEQLIERALTWLDI 193 (200)
T ss_dssp C-TTSCEEEEETTSCHHHHHHHHHHHHCC
T ss_pred C-CCCCeEEEECCCCHHHHHHHHHHHHHh
Confidence 1 122567899999999999999887754
No 54
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.73 E-value=9.6e-17 Score=117.94 Aligned_cols=171 Identities=15% Similarity=0.252 Sum_probs=96.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHh----cCChh--hHHHHHHhh-----------------cC
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIA----SNSEY--GTTILNTIK-----------------EG 65 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~----~~~~~--~~~~~~~l~-----------------~~ 65 (196)
+++|+|+|++||||||+++.|++.+|+.+++.|++++.... .+.+. ...+.+... .+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 46899999999999999999999999999999999885421 22211 111222211 11
Q ss_pred CCCCHH----HH---------HHHHHHHHh-----cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHH
Q 029287 66 KIVPSE----VT---------VSLIQKEME-----SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVN 127 (196)
Q Consensus 66 ~~~~~~----~~---------~~~i~~~l~-----~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~ 127 (196)
..+.+. .. ++.+...+. .....++++|+..... .+...++++|||++|++++.+
T Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~~--------~~~~~~d~~i~l~~~~e~~~~ 156 (227)
T 1cke_A 85 EDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGT--------VVFPDAPVKIFLDASSEERAH 156 (227)
T ss_dssp EECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCCC--------CCCTTCSEEEEEECCHHHHHH
T ss_pred eeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCccc--------eEecCCCEEEEEeCCHHHHHH
Confidence 111111 00 122222221 1234678899874221 233478999999999999999
Q ss_pred HHhhc--cCCCCCCcHHH----HHHHHH-HHHhchHhHHHHHHhcCcEEEEeCC-CCHhHHHHHHHHHHHhhh
Q 029287 128 RVLNR--NEGRVDDNIDT----VRKRLQ-VFKALNLPVINYYARRGKLYTINAV-GTVDEIFEQVRAVFAALK 192 (196)
Q Consensus 128 Rl~~r--~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~I~~~-~~~~~v~~~i~~~i~~~~ 192 (196)
|+..+ .+++.. +.+. +.+|.. .|.....+. ......++||++ ++++++.++|.+.+...+
T Consensus 157 R~~~~l~~rg~~~-~~~~~~~~i~~R~~~~~~~~~~pl----~~~~~~~~Id~~~~~~~ev~~~I~~~l~~~~ 224 (227)
T 1cke_A 157 RRMLQLQVKGFSV-NFERLLAEIKERDDRDRNRAVAPL----VPAADALVLDSTTLSIEQVIEKALQYARQKL 224 (227)
T ss_dssp HHHHHHHHHTCCC-CHHHHHHHHC-------------C----CCCTTCEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCccC-CHHHHHHHHHHHHHhhhhhcccCc----cCCCCEEEEeCCCCCHHHHHHHHHHHHHHhh
Confidence 95432 113321 2222 222111 111110111 111234688988 899999999998887654
No 55
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.72 E-value=5.7e-17 Score=117.37 Aligned_cols=164 Identities=20% Similarity=0.292 Sum_probs=97.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCC-----CCCH----------H---
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGK-----IVPS----------E--- 71 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~----------~--- 71 (196)
++|+|+|++||||||+++.|++ +|+.+++.|++++............+.+...... .... .
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 80 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL 80 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence 5899999999999999999999 8999999998877543333222222322221100 0110 0
Q ss_pred -----HHHHH----HHHHHhcCCC-CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcH
Q 029287 72 -----VTVSL----IQKEMESSDS-KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNI 141 (196)
Q Consensus 72 -----~~~~~----i~~~l~~~~~-~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~ 141 (196)
...+. +...+..... ..+|+++....... +...++.+|||++|++++.+|+.+| +. +.
T Consensus 81 ~~l~~l~~~~v~~~~~~~~~~~~~~~~vive~~~l~~~~-------~~~~~~~~i~l~~~~e~~~~Rl~~R--~~---~~ 148 (204)
T 2if2_A 81 RKLEEITHRALYKEIEKITKNLSEDTLFILEASLLVEKG-------TYKNYDKLIVVYAPYEVCKERAIKR--GM---SE 148 (204)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHSCTTCCEEEECSCSTTTT-------CGGGSSEEEEECCCHHHHHHHHHHT--CC---CH
T ss_pred HHHHHhhCHHHHHHHHHHHHhccCCCEEEEEccccccCC-------chhhCCEEEEEECCHHHHHHHHHHc--CC---CH
Confidence 11111 1112221222 56778864321111 1124789999999999999999987 32 33
Q ss_pred HHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287 142 DTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192 (196)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~ 192 (196)
+.+.+++.. .. +... +..... ++|+++++++++.++|.+.+..+.
T Consensus 149 ~~~~~~~~~---~~-~~~~-~~~~ad-~vId~~~~~~~~~~~i~~~l~~~~ 193 (204)
T 2if2_A 149 EDFERRWKK---QM-PIEE-KVKYAD-YVIDNSGSIEETYKQVKKVYEELT 193 (204)
T ss_dssp HHHHHHHTT---SC-CHHH-HGGGCS-EECCCSSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHh---CC-ChhH-HHhcCC-EEEECCCCHHHHHHHHHHHHHHHh
Confidence 344443322 21 1112 222233 568888999999999998887654
No 56
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.72 E-value=1.2e-16 Score=113.86 Aligned_cols=164 Identities=12% Similarity=0.123 Sum_probs=90.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCCC
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE-GKIVPSEVTVSLIQKEMESSDSK 87 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~i~~~l~~~~~~ 87 (196)
+..|+|+|++||||||+++.|++.+|+.+++.|++..+.... +. .+.... |...........+...... ..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g~--~~----~~~~~~~g~~~~~~~~~~~~~~~~~~--~~ 76 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGA--DI----AWIFEMEGEAGFRRREREMIEALCKL--DN 76 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHTS--CH----HHHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCC--Ch----hhHHHHhCHHHHHHHHHHHHHHHHhc--CC
Confidence 468889999999999999999999999999998887654221 11 111110 1111111222333333222 23
Q ss_pred cEEEeC--CCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHH--hhccCCCCCCcHHHHHHHH-HHHHhchHhHHHHH
Q 029287 88 KFLIDG--FPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRV--LNRNEGRVDDNIDTVRKRL-QVFKALNLPVINYY 162 (196)
Q Consensus 88 ~~iid~--~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl--~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 162 (196)
.++..+ .......+..+.. .+.+|||++|++++.+|+ ..+. .|.........+++ ..|... .+....+
T Consensus 77 ~vi~~gg~~~~~~~~~~~l~~-----~~~vi~L~~~~e~l~~Rl~~~~~~-~rp~~~~~~~~~~l~~~~~~r-~~~y~~~ 149 (185)
T 3trf_A 77 IILATGGGVVLDEKNRQQISE-----TGVVIYLTASIDTQLKRIGQKGEM-RRPLFIKNNSKEKLQQLNEIR-KPLYQAM 149 (185)
T ss_dssp CEEECCTTGGGSHHHHHHHHH-----HEEEEEEECCHHHHHHHHHCCTTC-SSCCCCCHHHHHHHHHHHHHH-HHHHHHH
T ss_pred cEEecCCceecCHHHHHHHHh-----CCcEEEEECCHHHHHHHHhhcCCC-CCCCCCCCCHHHHHHHHHHHH-HHHHhhc
Confidence 333333 3333344443332 247899999999999999 4332 33332222111211 122222 1222221
Q ss_pred HhcCcEEEEeCCC-CHhHHHHHHHHHHHhh
Q 029287 163 ARRGKLYTINAVG-TVDEIFEQVRAVFAAL 191 (196)
Q Consensus 163 ~~~~~~~~I~~~~-~~~~v~~~i~~~i~~~ 191 (196)
.-++||++. +++++.++|.+.+...
T Consensus 150 ----ad~~Idt~~~~~~e~~~~I~~~l~~~ 175 (185)
T 3trf_A 150 ----ADLVYPTDDLNPRQLATQILVDIKQT 175 (185)
T ss_dssp ----CSEEEECTTCCHHHHHHHHHHHSCC-
T ss_pred ----CCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 225677765 8999999988776543
No 57
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.71 E-value=8e-17 Score=113.15 Aligned_cols=155 Identities=17% Similarity=0.239 Sum_probs=86.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCCC
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE-GKIVPSEVTVSLIQKEMESSDSK 87 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~i~~~l~~~~~~ 87 (196)
+-+|+|+|++||||||+++.|++.+|+.+++.|++.++... .. +.+.+.. |...........+..... ...
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g--~~----~~~~~~~~g~~~~~~~~~~~l~~~~~--~~~ 78 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVG--LS----VREIFEELGEDNFRMFEKNLIDELKT--LKT 78 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHT--SC----HHHHHHHTCHHHHHHHHHHHHHHHHT--CSS
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhC--CC----HHHHHHHhCHHHHHHHHHHHHHHHHh--cCC
Confidence 45899999999999999999999999999999988876532 11 2222221 211111111222333322 122
Q ss_pred c-EEEeC--CCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc-CCCCCCc-HHHHHHHHHHHHhchHhHHHHH
Q 029287 88 K-FLIDG--FPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN-EGRVDDN-IDTVRKRLQVFKALNLPVINYY 162 (196)
Q Consensus 88 ~-~iid~--~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 162 (196)
. ++..+ ++.. .. + ..++.+|||++|++++.+|+.+|. .+|.... .+.+.+ .|... ...|
T Consensus 79 ~~Vi~~g~g~~~~-~~-------l-~~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~~~~~~---~~~~r----~~~~ 142 (168)
T 1zuh_A 79 PHVISTGGGIVMH-EN-------L-KGLGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKE---LFEKR----QALY 142 (168)
T ss_dssp CCEEECCGGGGGC-GG-------G-TTSEEEEEEECCHHHHHHHHCC--------CCTTHHHHH---HHHHH----HHHH
T ss_pred CEEEECCCCEech-hH-------H-hcCCEEEEEECCHHHHHHHHhccCCCCCCCccCHHHHHH---HHHHH----HHHH
Confidence 2 33322 2212 11 2 357899999999999999998762 1222212 222222 22222 1122
Q ss_pred HhcCcEEEEeCCCCHhHHHHHHHHHH
Q 029287 163 ARRGKLYTINAVGTVDEIFEQVRAVF 188 (196)
Q Consensus 163 ~~~~~~~~I~~~~~~~~v~~~i~~~i 188 (196)
... ..++||++++++++.++|.+.+
T Consensus 143 ~~~-a~~~Id~~~~~e~~~~~I~~~l 167 (168)
T 1zuh_A 143 EKN-ASFIIDARGGLNNSLKQVLQFI 167 (168)
T ss_dssp HHT-CSEEEEGGGCHHHHHHHHHHC-
T ss_pred HHH-CCEEEECCCCHHHHHHHHHHHh
Confidence 221 3456888779999988876543
No 58
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.70 E-value=5.3e-16 Score=112.37 Aligned_cols=163 Identities=17% Similarity=0.206 Sum_probs=94.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHh----cCC--hhhHHHHHHhh-----------------cCCC
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIA----SNS--EYGTTILNTIK-----------------EGKI 67 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~----~~~--~~~~~~~~~l~-----------------~~~~ 67 (196)
+|+|+|++||||||+++.|++.+|+.+++.|.+.+.... .+. .....+.+.+. .|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 83 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGED 83 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCee
Confidence 899999999999999999999999999999988765421 111 11111211111 1111
Q ss_pred CC----HH-------------HHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHh
Q 029287 68 VP----SE-------------VTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVL 130 (196)
Q Consensus 68 ~~----~~-------------~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~ 130 (196)
++ .. .+...+.+.+.... .++|+++.... ..+...++++|||++|++++.+|+.
T Consensus 84 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~vi~g~~~~--------~~~~~~~d~~i~l~a~~e~~~~R~~ 154 (208)
T 3ake_A 84 LTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP-PPFVAEGRDMG--------TAVFPEAAHKFYLTASPEVRAWRRA 154 (208)
T ss_dssp CGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC-SCEEEEESSCC--------CCCCTTCSEEEEEECCHHHHHHHHH
T ss_pred CchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc-CCEEEEcccee--------EEEecCCcEEEEEECCHHHHHHHHH
Confidence 11 00 11111222211122 56778876422 0123457899999999999999998
Q ss_pred hccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCC-CHhHHHHHHHHHHH
Q 029287 131 NRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVG-TVDEIFEQVRAVFA 189 (196)
Q Consensus 131 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~-~~~~v~~~i~~~i~ 189 (196)
+|.. .+.+.+.+++..-..... ..+......++||+++ +++++.++|.+.+.
T Consensus 155 ~r~~----~~~~~~~~~~~~R~~~~~---~~~~~~ad~~~Id~~~~~~ee~~~~I~~~~~ 207 (208)
T 3ake_A 155 RERP----QAYEEVLRDLLRRDERDK---AQSAPAPDALVLDTGGMTLDEVVAWVLAHIR 207 (208)
T ss_dssp HTSS----SCHHHHHHHHHHHHHTC-----CCCCCTTCEEEETTTSCHHHHHHHHHHHHH
T ss_pred hhcc----cCHHHHHHHHHHHHHHHh---hcccCCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence 8731 233333332221111110 0001223457899886 99999999887664
No 59
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.70 E-value=1.5e-16 Score=119.49 Aligned_cols=161 Identities=14% Similarity=0.183 Sum_probs=98.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHH---hCCcee--chhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKN---YGLTHL--SAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEME 82 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~---~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~ 82 (196)
.|++|+|+|+|||||||+++.|++. +|+.++ +.|.+. .......+.+... ........+...+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~-~~l~~~~~~~e~~----------~~~~~~~~i~~~l~ 71 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR-ESFPVWKEKYEEF----------IKKSTYRLIDSALK 71 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH-TTSSSCCGGGHHH----------HHHHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH-HHHhhhhHHHHHH----------HHHHHHHHHHHHhh
Confidence 4679999999999999999999998 687777 665443 2211111111110 00111233344443
Q ss_pred cCCCCcEEEeCCCCCHHHHHHHHHH--hCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHH
Q 029287 83 SSDSKKFLIDGFPRSEENRAAFERI--MGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVIN 160 (196)
Q Consensus 83 ~~~~~~~iid~~~~~~~~~~~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (196)
. ..+|+|+.......+..+... -...|+.+|||++|++++.+|+.+|. +. ...+.+++....|.....
T Consensus 72 --~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~--~~-~~~~~l~~~~~~~e~~~~---- 141 (260)
T 3a4m_A 72 --N-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERG--EK-IPNEVIKKMYEKFDEPGK---- 141 (260)
T ss_dssp --T-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTT--CS-SCHHHHHHHHHHCCCTTS----
T ss_pred --C-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCC--CC-CCHHHHHHHHHHhcCccc----
Confidence 2 678899877665555444432 23467899999999999999999873 22 234555554444443211
Q ss_pred HHHhcCcEEEEeCCC--CHhHHHHHHHHHHH
Q 029287 161 YYARRGKLYTINAVG--TVDEIFEQVRAVFA 189 (196)
Q Consensus 161 ~~~~~~~~~~I~~~~--~~~~v~~~i~~~i~ 189 (196)
.|.-....++||++. +++++.+.|.+.+.
T Consensus 142 ~~~~~~~~~~Id~~~~~~~~ei~~~I~~~l~ 172 (260)
T 3a4m_A 142 KYKWDEPFLIIDTTKDIDFNEIAKKLIEKSK 172 (260)
T ss_dssp SCGGGCCSEEEETTSCCCHHHHHHHHHHHHT
T ss_pred cCCCCCCEEEEeCCCCCCHHHHHHHHHhccc
Confidence 111123567899876 78888888876654
No 60
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.70 E-value=2.5e-16 Score=112.19 Aligned_cols=156 Identities=17% Similarity=0.246 Sum_probs=87.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhh-cCCCCCHHHHHHHHHHHHhcCCCCc
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIK-EGKIVPSEVTVSLIQKEMESSDSKK 88 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~i~~~l~~~~~~~ 88 (196)
++|+|+|++||||||+++.|++.+|+.+++.|++.+..... + +.+.+. .|...........+...+.. ...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g~--~----~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~ 74 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGR--S----IADIFATDGEQEFRRIEEDVVRAALAD--HDG 74 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHSS--C----HHHHHHHHCHHHHHHHHHHHHHHHHHH--CCS
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcCC--C----HHHHHHHhChHHHHHHHHHHHHHHHhc--CCe
Confidence 57899999999999999999999999999999887765321 1 111111 11111111112223333222 222
Q ss_pred EEEeC--CCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCC----CcHHHHHHHHHHHHhchHhHHHHH
Q 029287 89 FLIDG--FPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVD----DNIDTVRKRLQVFKALNLPVINYY 162 (196)
Q Consensus 89 ~iid~--~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 162 (196)
++..+ +......+.. +. .+.+|||++|++++.+|+.+|. ++.. +..+.+.. .|... . ..|
T Consensus 75 vi~~g~~~v~~~~~~~~----l~--~~~vV~L~~~~e~~~~Rl~~r~-~r~~~~~~~~~~~i~~---~~~~r-~---~~~ 140 (184)
T 2iyv_A 75 VLSLGGGAVTSPGVRAA----LA--GHTVVYLEISAAEGVRRTGGNT-VRPLLAGPDRAEKYRA---LMAKR-A---PLY 140 (184)
T ss_dssp EEECCTTGGGSHHHHHH----HT--TSCEEEEECCHHHHHHHTTCCC-CCSSTTSCCHHHHHHH---HHHHH-H---HHH
T ss_pred EEecCCcEEcCHHHHHH----Hc--CCeEEEEeCCHHHHHHHHhCCC-CCCCccCCCHHHHHHH---HHHHH-H---HHH
Confidence 33323 1112222222 21 5678999999999999998873 2221 11222222 12211 1 122
Q ss_pred HhcCcEEEEeCC-CCHhHHHHHHHHHH
Q 029287 163 ARRGKLYTINAV-GTVDEIFEQVRAVF 188 (196)
Q Consensus 163 ~~~~~~~~I~~~-~~~~~v~~~i~~~i 188 (196)
... ..++||++ .+++++.++|.+.+
T Consensus 141 ~~~-~~~~Idt~~~s~ee~~~~I~~~l 166 (184)
T 2iyv_A 141 RRV-ATMRVDTNRRNPGAVVRHILSRL 166 (184)
T ss_dssp HHH-CSEEEECSSSCHHHHHHHHHTTS
T ss_pred hcc-CCEEEECCCCCHHHHHHHHHHHH
Confidence 222 23678887 79999998887655
No 61
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.70 E-value=6.5e-17 Score=117.39 Aligned_cols=168 Identities=18% Similarity=0.166 Sum_probs=100.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHh-CCceechhHHHHHHHhcCChhhHHHHHHhhc-C--CCCCHHHHHHHHHHHHh
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNY-GLTHLSAGELLRREIASNSEYGTTILNTIKE-G--KIVPSEVTVSLIQKEME 82 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~--~~~~~~~~~~~i~~~l~ 82 (196)
+.+.+|+|+|++||||||+++.|++.+ ++.+++.|++++..-.. ..+ ...... . ..+........+...+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~l~~~i~~~l~ 93 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEI--ETD---KNGFLQYDVLEALNMEKMMSAISCWME 93 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGS--CBC---TTSCBCCSSGGGBCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHh--hcc---ccCCChhHHHHHhHHHHHHHHHHHHHh
Confidence 456899999999999999999999988 88889988765421000 000 000000 0 00111222222222222
Q ss_pred c-------------CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCc-HHHHH-HH
Q 029287 83 S-------------SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDN-IDTVR-KR 147 (196)
Q Consensus 83 ~-------------~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~-~~~~~-~~ 147 (196)
. .....+|+++++.... ..+...||.++|+++|++++.+|+..|. +..+. ...+. +.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~vi~eg~~~~~~------~~~~~~~d~~i~l~~~~~~~~~R~~~R~--~~~e~~~~~~~~~~ 165 (207)
T 2qt1_A 94 SARHSVVSTDQESAEEIPILIIEGFLLFNY------KPLDTIWNRSYFLTIPYEECKRRRSTRV--YQPPDSPGYFDGHV 165 (207)
T ss_dssp HHTTSSCCC-----CCCCEEEEECTTCTTC------GGGTTTCSEEEEEECCHHHHHHHHHHSC--CSSCCCTTHHHHTH
T ss_pred CCCCCCcCCCeeecCCCCEEEEeehHHcCc------HHHHHhcCeeEEEECCHHHHHHHHHHcC--CCccchHHHHHHHH
Confidence 1 1245788998653311 1233478999999999999999998773 22221 22232 23
Q ss_pred HHHHHhchHhHHHHHHhc-CcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287 148 LQVFKALNLPVINYYARR-GKLYTINAVGTVDEIFEQVRAVFAAL 191 (196)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~-~~~~~I~~~~~~~~v~~~i~~~i~~~ 191 (196)
...|... .+.+... ..++.||++++++++.++|.+.+..+
T Consensus 166 ~~~~~~~----~~~~~~~~~~v~~Id~~~~~eev~~~I~~~l~~~ 206 (207)
T 2qt1_A 166 WPMYLKY----RQEMQDITWEVVYLDGTKSEEDLFLQVYEDLIQE 206 (207)
T ss_dssp HHHHHHH----HHHGGGCSSCCEEEETTSCHHHHHHHHHHHHTTT
T ss_pred hHHHHHH----HHHHHhcCCeEEEecCCCCHHHHHHHHHHHHHhh
Confidence 3344332 3333333 56778999999999999998887654
No 62
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.69 E-value=2.5e-15 Score=106.75 Aligned_cols=159 Identities=13% Similarity=0.125 Sum_probs=87.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCcee-chhHHHHHHHhcCChhhHHHHHHhhcCCCC----CH--HHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHL-SAGELLRREIASNSEYGTTILNTIKEGKIV----PS--EVTVSLIQKE 80 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~--~~~~~~i~~~ 80 (196)
+|++|+|+|++||||||+++.|++.+|..++ +.+. .+..+++.+..+... .. ....+.+...
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~-----------~g~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~ 72 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEE-----------MGQALRKLTPGFSGDPQEHPMWIPLMLDALQYA 72 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEECCTHH-----------HHHHHHHTSTTCCSCGGGSTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhh-----------hHHHHHHhCccccchhhhhHHHHHHHHHHHHHH
Confidence 4678999999999999999999999998887 4311 112222222211110 00 2233444444
Q ss_pred HhcCCCCcEEEeCCCCCHHHHHHHHHH---hCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHh
Q 029287 81 MESSDSKKFLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLP 157 (196)
Q Consensus 81 l~~~~~~~~iid~~~~~~~~~~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (196)
+.. .+..+|+|+.......+..+... .+..+ ..|||++|++++.+|+.+|. .+. ...+.++.....+...
T Consensus 73 l~~-~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~-~~i~l~~~~e~~~~R~~~R~-~r~-~~~~~~~~~~~~~~~~--- 145 (183)
T 2vli_A 73 SRE-AAGPLIVPVSISDTARHRRLMSGLKDRGLSV-HHFTLIAPLNVVLERLRRDG-QPQ-VNVGTVEDRLNELRGE--- 145 (183)
T ss_dssp HHH-CSSCEEEEECCCCHHHHHHHHHHHHHTTCCC-EEEEEECCHHHHHHHHHTC------CCHHHHHHHHHHHTSG---
T ss_pred HHh-CCCcEEEeeeccCHHHHHHHHHHHHhcCCce-EEEEEeCCHHHHHHHHHhcc-ccc-hhHHHHHHHHHhhccc---
Confidence 443 24556778655554333222222 22223 45999999999999999873 222 2233333322222211
Q ss_pred HHHHHHhcCcEEEEeCC-CCHhHHHHHHHHHHHhhh
Q 029287 158 VINYYARRGKLYTINAV-GTVDEIFEQVRAVFAALK 192 (196)
Q Consensus 158 ~~~~~~~~~~~~~I~~~-~~~~~v~~~i~~~i~~~~ 192 (196)
. + .. +||++ .+++++.++|.+.+...+
T Consensus 146 --~-~----~~-~Id~~~~~~~~~~~~I~~~l~~~~ 173 (183)
T 2vli_A 146 --Q-F----QT-HIDTAGLGTQQVAEQIAAQVGLTL 173 (183)
T ss_dssp --G-G----CS-EEECTTCCHHHHHHHHHHHHTCCC
T ss_pred --c-c----ce-EeeCCCCCHHHHHHHHHHHHHHhc
Confidence 1 1 23 78887 899999999998886654
No 63
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.69 E-value=2.2e-16 Score=111.64 Aligned_cols=158 Identities=15% Similarity=0.213 Sum_probs=90.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhh-cCCCCCHHHHHHHHHHHHhcCCCC
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIK-EGKIVPSEVTVSLIQKEMESSDSK 87 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~i~~~l~~~~~~ 87 (196)
+++|+|.|++||||||+++.|++.+|+.+++.|++++..... + +.+.+. .+...........+. .+. ...
T Consensus 4 m~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g~--~----~~~~~~~~g~~~~~~~~~~~~~-~l~--~~~ 74 (175)
T 1via_A 4 AKNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQ--K----VSEIFEQKRENFFREQEQKMAD-FFS--SCE 74 (175)
T ss_dssp -CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHTS--C----HHHHHHHHCHHHHHHHHHHHHH-HHT--TCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcCC--C----HHHHHHHcCHHHHHHHHHHHHH-HHH--ccC
Confidence 357899999999999999999999999999999887654211 1 111111 111111111112222 222 223
Q ss_pred cEEEe-CCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc-CCCCCCc-HHHHHHHHHHHHhchHhHHHHHHh
Q 029287 88 KFLID-GFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN-EGRVDDN-IDTVRKRLQVFKALNLPVINYYAR 164 (196)
Q Consensus 88 ~~iid-~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 164 (196)
.+|++ +...... .. + ...+.+|||++|++++.+|+.+|. .+|.... .+.+.+ .|... ...|..
T Consensus 75 ~~vi~~g~~~~~~-~~-----l-~~~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~~~~i~~---~~~~r----~~~y~~ 140 (175)
T 1via_A 75 KACIATGGGFVNV-SN-----L-EKAGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKK---LYNER----LSKYEQ 140 (175)
T ss_dssp SEEEECCTTGGGS-TT-----G-GGGCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHH---HHHHH----HHHHHH
T ss_pred CEEEECCCCEehh-hH-----H-hcCCEEEEEeCCHHHHHHHHhcccCCCCCCcccHHHHHH---HHHHH----HHHHHh
Confidence 34454 3221111 10 1 135789999999999999998773 2343332 333332 23322 122222
Q ss_pred cCcEEEEeCC-CCHhHHHHHHHHHHHh
Q 029287 165 RGKLYTINAV-GTVDEIFEQVRAVFAA 190 (196)
Q Consensus 165 ~~~~~~I~~~-~~~~~v~~~i~~~i~~ 190 (196)
. ..+.||++ .+++++.+.|.+.+..
T Consensus 141 ~-~~~~Idt~~~~~eev~~~I~~~l~~ 166 (175)
T 1via_A 141 K-ANFILNIENKNIDELLSEIKKVIKE 166 (175)
T ss_dssp H-CSEEEECTTCCHHHHHHHHHHHHC-
T ss_pred c-CCEEEECCCCCHHHHHHHHHHHHHh
Confidence 1 34678887 7999999998877643
No 64
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.68 E-value=3.2e-15 Score=106.56 Aligned_cols=162 Identities=16% Similarity=0.285 Sum_probs=92.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHH-hCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCC---CHHHHHHHHHHHHhc
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKN-YGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIV---PSEVTVSLIQKEMES 83 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~i~~~l~~ 83 (196)
.+++|+|+|++||||||+++.|++. +|+.+++.|+++++. ......+..+ . .... .+......+...+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~-~~~~~~~~~~----~-~~~~~r~~~~~~~~~l~~~~~~ 82 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKEN-HFYTEYDTEL----D-THIIEEKDEDRLLDFMEPIMVS 82 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHT-TCSCC-----------CCCCCHHHHHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHh-hhhhhHHHHh----h-hcccCCCCHHHHHHHHHHHHhc
Confidence 4578999999999999999999999 799999999988764 1111111111 0 0111 122233444444432
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHH--HHHHhchHhHHHH
Q 029287 84 SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRL--QVFKALNLPVINY 161 (196)
Q Consensus 84 ~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 161 (196)
..+++++..... .+.. ..++.+|||++|++++.+|+.+|. . +...+..+. +.+..........
T Consensus 83 --~g~~vi~~~~~~-----~~~~---~~~~~vi~l~~~~e~~~~Rl~~R~--~---~~~~~~~~~~~q~~~~l~~~~~~~ 147 (184)
T 1y63_A 83 --RGNHVVDYHSSE-----LFPE---RWFHMVVVLHTSTEVLFERLTKRQ--Y---SEAKRAENMEAEIQCICEEEARDA 147 (184)
T ss_dssp --SSEEEEECSCCT-----TSCG---GGCSEEEEEECCHHHHHHHHHHTT--C---CHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred --cCCEEEeCchHh-----hhhh---ccCCEEEEEECCHHHHHHHHHhCC--C---ChhhhHhhHHHHHHHHHHHHHHHH
Confidence 345667754211 1110 136789999999999999999882 1 122222221 1122222222333
Q ss_pred HHhcCcEEEEe-CCCCHhHHHHHHHHHHHhhhh
Q 029287 162 YARRGKLYTIN-AVGTVDEIFEQVRAVFAALKL 193 (196)
Q Consensus 162 ~~~~~~~~~I~-~~~~~~~v~~~i~~~i~~~~~ 193 (196)
|+. . ++|+ ++++++++.+++.+++..+..
T Consensus 148 y~~--~-~vi~~n~~~~~~~~~~v~~i~~~l~~ 177 (184)
T 1y63_A 148 YED--D-IVLVRENDTLEQMAATVEEIRERVEV 177 (184)
T ss_dssp SCG--G-GEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred hcc--C-cEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 331 2 2344 467899997777776665543
No 65
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=99.68 E-value=4.1e-17 Score=122.75 Aligned_cols=81 Identities=14% Similarity=0.208 Sum_probs=54.6
Q ss_pred CCCcEEEEeecChHHHHHHHhhccCCCC---CCcHHHHHHHHHHHHhc-----hHhHHHHHHhcCcEEEEeCCCCHhHHH
Q 029287 110 AEPDIVLFFDCPEEEMVNRVLNRNEGRV---DDNIDTVRKRLQVFKAL-----NLPVINYYARRGKLYTINAVGTVDEIF 181 (196)
Q Consensus 110 ~~p~~~i~ld~~~~~~~~Rl~~r~~~~~---~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~I~~~~~~~~v~ 181 (196)
..||++||||+|++++.+|+.+| +|. ....+.++.....|..+ ..+....++. .++++||++++++++.
T Consensus 173 ~~pd~vi~L~~~~e~~~~Ri~~R--~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~-~~~~~Id~~~~~eev~ 249 (263)
T 1p5z_B 173 LELDGIIYLQATPETCLHRIYLR--GRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQE-VPILTLDVNEDFKDKY 249 (263)
T ss_dssp HCCSEEEEEECCHHHHHHHHHHH--CCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGG-SCEEEEECCSCHHHHH
T ss_pred CCCCeEEEEECCHHHHHHHHHhc--CCccccCccHHHHHHHHHHHHHHHhhccchhhhhhhcc-CCEEEEECCCCHHHHH
Confidence 47999999999999999999887 332 12334444333334332 1112222233 5688999999999999
Q ss_pred HHHHHHHHhhhh
Q 029287 182 EQVRAVFAALKL 193 (196)
Q Consensus 182 ~~i~~~i~~~~~ 193 (196)
++|.+.+...+.
T Consensus 250 ~~I~~~l~~~l~ 261 (263)
T 1p5z_B 250 ESLVEKVKEFLS 261 (263)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999998877653
No 66
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.67 E-value=7.6e-16 Score=111.15 Aligned_cols=165 Identities=22% Similarity=0.268 Sum_probs=95.9
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHh----hcCCCCCHHH---------
Q 029287 6 GKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTI----KEGKIVPSEV--------- 72 (196)
Q Consensus 6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~--------- 72 (196)
+..+++|+|+|++||||||+++.|++. |+.+++.|++++... .+.+ ..+.+.. ..+ .+....
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~-~~~~--~~i~~~~~~~~~~g-~i~~~~l~~~~~~~~ 79 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR-ENKE--EELKRLFPEAVVGG-RLDRRALARLVFSDP 79 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH-HHTH--HHHHHHCGGGEETT-EECHHHHHHHHTTSH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc-CChH--HHHHHHHHHHHhCC-CcCHHHHHHHHhCCH
Confidence 345789999999999999999999998 999999998877654 2111 1222111 111 111110
Q ss_pred ---------HHHHHH-HHHh---cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCC
Q 029287 73 ---------TVSLIQ-KEME---SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDD 139 (196)
Q Consensus 73 ---------~~~~i~-~~l~---~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~ 139 (196)
.++.+. ..+. ..+...+|+++-..... .+...+|.+|||++|++++.+|+.+|. ..
T Consensus 80 ~~~~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~~~l~~~-------~~~~~~d~~i~l~~~~e~~~~R~~~R~----~~ 148 (203)
T 1uf9_A 80 ERLKALEAVVHPEVRRLLMEELSRLEAPLVFLEIPLLFEK-------GWEGRLHGTLLVAAPLEERVRRVMARS----GL 148 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEECTTTTTT-------TCGGGSSEEEEECCCHHHHHHHHHTTT----CC
T ss_pred HHHHHHHHHhChHHHHHHHHHhhhcCCCEEEEEecceecc-------CchhhCCEEEEEECCHHHHHHHHHHcC----CC
Confidence 111111 1111 22245677775321110 111247899999999999999999873 11
Q ss_pred cHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287 140 NIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192 (196)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~ 192 (196)
+.+.+.+++.. . .+..... .... ++|+++++++++.++|.+.+..++
T Consensus 149 ~~~~~~~~i~~---~-~~~~~~~-~~ad-~vId~~~~~~~~~~~i~~~~~~~~ 195 (203)
T 1uf9_A 149 SREEVLARERA---Q-MPEEEKR-KRAT-WVLENTGSLEDLERALKAVLAELT 195 (203)
T ss_dssp TTHHHHHHHTT---S-CCHHHHH-HHCS-EEECCSSHHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHH---C-CChhHHH-HhCC-EEEECCCCHHHHHHHHHHHHHHHH
Confidence 22233333221 1 1111111 2223 478888899999999998887654
No 67
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.66 E-value=4.1e-15 Score=105.52 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=68.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCC
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSK 87 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~ 87 (196)
.+.+|+|+|++||||||+++.|++.+|+.+++.++++++.. .....+.. ..............+...+.. .
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---g 80 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQ-LYDGYDEE-----YDCPILDEDRVVDELDNQMRE---G 80 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHT-CEEEEETT-----TTEEEECHHHHHHHHHHHHHH---C
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcc-hhhhhhhh-----hcCccCChHHHHHHHHHHHhc---C
Confidence 34678899999999999999999999999999998877641 10000000 000111233344444444443 2
Q ss_pred cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhc
Q 029287 88 KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNR 132 (196)
Q Consensus 88 ~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r 132 (196)
+++++......- . ...++.+|||++|++++.+|+.+|
T Consensus 81 ~~vv~~~~~~~~-----~---~~~~~~vi~L~~~~e~l~~R~~~r 117 (180)
T 3iij_A 81 GVIVDYHGCDFF-----P---ERWFHIVFVLRTDTNVLYERLETR 117 (180)
T ss_dssp CEEEECSCCTTS-----C---GGGCSEEEEEECCHHHHHHHHHHT
T ss_pred CEEEEechhhhc-----c---hhcCCEEEEEECCHHHHHHHHHHc
Confidence 455664321100 0 012789999999999999999988
No 68
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.65 E-value=1.9e-15 Score=108.34 Aligned_cols=150 Identities=14% Similarity=0.173 Sum_probs=90.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhc----CCCCC---------------
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE----GKIVP--------------- 69 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~--------------- 69 (196)
.++|+|+|++||||||+++.|++.+|+.+++.|+++++...+ ....+.+.... ...++
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~---~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~~~ 88 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE---VKEKLVELFGGSVLEDGKVNRKKLAGIVFESRENL 88 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH---THHHHHHHHCGGGBSSSSBCHHHHHHHHTTCHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH---HHHHHHHHhChhhcCCCCcCHHHHHHHHhCCHHHH
Confidence 479999999999999999999999999999999998776544 11112111110 00010
Q ss_pred ---HHHHHHHHHHH----HhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHH
Q 029287 70 ---SEVTVSLIQKE----MESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNID 142 (196)
Q Consensus 70 ---~~~~~~~i~~~----l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~ 142 (196)
....++.+... +... ...+++|. |...+. .+....|.+||+++|++++.+|+..+
T Consensus 89 ~~l~~i~hP~i~~~~~~~~~~~-~~~vv~d~-pll~e~------~~~~~~d~vi~v~a~~e~r~~Rli~~---------- 150 (192)
T 2grj_A 89 KKLELLVHPLMKKRVQEIINKT-SGLIVIEA-ALLKRM------GLDQLCDHVITVVASRETILKRNREA---------- 150 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-CEEEEEEC-TTTTTT------TGGGGCSEEEEEECCHHHHHHHCSSH----------
T ss_pred HHHHhhhCHHHHHHHHHHHHHc-CCEEEEEE-eceeec------ChHHhCCEEEEEECCHHHHHHHHHHh----------
Confidence 01223333322 2221 34556764 422111 11224689999999999999998221
Q ss_pred HHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287 143 TVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAAL 191 (196)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~ 191 (196)
+...|... ....+. ++|+++++++++.+++.+.+.++
T Consensus 151 ----q~~~~~~~-------~~~~AD-~vI~n~~~~~~l~~~v~~~~~~l 187 (192)
T 2grj_A 151 ----DRRLKFQE-------DIVPQG-IVVANNSTLEDLEKKVEEVMKLV 187 (192)
T ss_dssp ----HHHHTTCT-------TCCCCS-EEEECSSCHHHHHHHHHHHHHHH
T ss_pred ----cCCchhhh-------HHhcCC-EEEECCCCHHHHHHHHHHHHHHH
Confidence 11111011 011222 46888899999999998888766
No 69
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.65 E-value=6.5e-16 Score=118.20 Aligned_cols=165 Identities=20% Similarity=0.237 Sum_probs=97.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHh-CCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhc-CCC
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNY-GLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMES-SDS 86 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~-~~~ 86 (196)
|++|+|.|+|||||||+++.|++.+ |+.+++.|. ++.......+ +.. ..+...+...........+...+.. ..+
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~-~r~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~g 78 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDD-YRQSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILYGGDSV 78 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHH-HHHHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTSCTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccH-HHHHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHhhccCC
Confidence 4789999999999999999999985 899999984 4444332111 000 0000000000011222334444421 345
Q ss_pred CcEEEeCCCCCHHHHHHHHHHh--CCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhH-HHHHH
Q 029287 87 KKFLIDGFPRSEENRAAFERIM--GAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPV-INYYA 163 (196)
Q Consensus 87 ~~~iid~~~~~~~~~~~~~~~~--~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 163 (196)
..+|+|+++.+..++..+.... ...+..+|||++|++++.+|+.+|.. .....+.++++...|....... .. +.
T Consensus 79 ~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~--~~~~~e~i~~~~~~~~~~~~~~~~~-~~ 155 (301)
T 1ltq_A 79 KGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT--KAVPIDVLRSMYKSMREYLGLPVYN-GT 155 (301)
T ss_dssp CEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGG--GCCCHHHHHHHHHHHHHHHTCCCCC-CC
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccC--CCCCHHHHHHHHHHHhcccCCccee-cc
Confidence 7889999988866665554322 22455789999999999999999842 2346777888777776653211 00 11
Q ss_pred h-cCcEEEEeCCCCHhH
Q 029287 164 R-RGKLYTINAVGTVDE 179 (196)
Q Consensus 164 ~-~~~~~~I~~~~~~~~ 179 (196)
. ....+.+|.++++++
T Consensus 156 ~~~~~~i~iD~dgtl~~ 172 (301)
T 1ltq_A 156 PGKPKAVIFDVDGTLAK 172 (301)
T ss_dssp TTSCEEEEEETBTTTBC
T ss_pred ccccceEEEeCCCCccc
Confidence 1 124556777666544
No 70
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=99.65 E-value=1.1e-15 Score=112.75 Aligned_cols=79 Identities=10% Similarity=0.198 Sum_probs=40.7
Q ss_pred hCCCCcEEEEeecChHHHHHHHhhccCCCCCC---cHHHHHHHHHHHHhchHhHHHHH--HhcCcEEEEeCCCCHhHHHH
Q 029287 108 MGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDD---NIDTVRKRLQVFKALNLPVINYY--ARRGKLYTINAVGTVDEIFE 182 (196)
Q Consensus 108 ~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~I~~~~~~~~v~~ 182 (196)
....||++||||+|++++.+|+.+| +|..+ +.+..+.....|.... ..| ..+..+++||++++++++.+
T Consensus 143 ~~~~pD~vi~Ld~~~e~~~~Ri~~R--~r~~e~~~~~~~~~rv~~~~~~~~----~~~~~~~~~~~~vId~~~~~eev~~ 216 (230)
T 2vp4_A 143 IHVQADLIIYLRTSPEVAYERIRQR--ARSEESCVPLKYLQELHELHEDWL----IHQRRPQSCKVLVLDADLNLENIGT 216 (230)
T ss_dssp BCCCCSEEEEEECCHHHHHHHHHHH--CCGGGTTCCHHHHHHHHHHHHHHH----TSCCSSCCCEEEEEECCC-------
T ss_pred hcCCCCEEEEEeCCHHHHHHHHHHc--CCcccccCcHHHHHHHHHHHHHHH----HHhcccCCCCEEEEECCCCHHHHHH
Confidence 3568999999999999999999887 44322 2233333334444431 111 23457899999999999999
Q ss_pred HHHHHHHhhh
Q 029287 183 QVRAVFAALK 192 (196)
Q Consensus 183 ~i~~~i~~~~ 192 (196)
+|.+.+..++
T Consensus 217 ~I~~~l~~~~ 226 (230)
T 2vp4_A 217 EYQRSESSIF 226 (230)
T ss_dssp ----------
T ss_pred HHHHHHHHHh
Confidence 9988887654
No 71
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.65 E-value=3.2e-16 Score=117.11 Aligned_cols=172 Identities=17% Similarity=0.260 Sum_probs=94.9
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHHHhCCc----------eechhHHHHHHHhcCChhhHHHHHHhhcC-----CCCCH
Q 029287 6 GKGPFICFVLGGPGSGKGTQCAKIVKNYGLT----------HLSAGELLRREIASNSEYGTTILNTIKEG-----KIVPS 70 (196)
Q Consensus 6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~----------~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~ 70 (196)
..+|++|+|+|++||||||+++.|++.+|+. +++.|++++.. .. +..-+...... .....
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~----~~-~~~~~~~~g~~~f~~~~~~d~ 93 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVL----TS-EQKAKALKGQFNFDHPDAFDN 93 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCC----CH-HHHHHHHTTCSCTTSGGGBCH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccccc----Ch-hhhhhhccCCCCCCCcchhhH
Confidence 3467899999999999999999999999987 68888876421 00 00001111110 00111
Q ss_pred HHHHHHHHHHHh----------------------cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHH
Q 029287 71 EVTVSLIQKEME----------------------SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNR 128 (196)
Q Consensus 71 ~~~~~~i~~~l~----------------------~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~R 128 (196)
....+.+..... ......+|+++....... .+.. .+|.+|||++|++++.+|
T Consensus 94 ~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~--~~~~----~~d~vi~l~~~~e~~~~R 167 (252)
T 1uj2_A 94 ELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQ--EVRD----LFQMKLFVDTDADTRLSR 167 (252)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSH--HHHH----HCSEEEEEECCHHHHHHH
T ss_pred HHHHHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCH--HHHH----hcCeeEEEeCCHHHHHHH
Confidence 122233333321 113457889986542111 1111 368999999999999999
Q ss_pred HhhccC-CCCCCcHHHHHHHHHHHHhchHhHHH----HHHhcCcEEE---EeCCCCHhHHHHHHHHHHHhhh
Q 029287 129 VLNRNE-GRVDDNIDTVRKRLQVFKALNLPVIN----YYARRGKLYT---INAVGTVDEIFEQVRAVFAALK 192 (196)
Q Consensus 129 l~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---I~~~~~~~~v~~~i~~~i~~~~ 192 (196)
+..|.. .+ ..+.+.+.+++. ....+... .+.....+++ ||++++++++.++|.+.+...+
T Consensus 168 ~~~R~~~~r-g~~~e~i~~~~~---~~~~~~~~~~i~~~~~~ad~vI~~~id~~~s~e~v~~~I~~~l~~~~ 235 (252)
T 1uj2_A 168 RVLRDISER-GRDLEQILSQYI---TFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDILNGGP 235 (252)
T ss_dssp HHHHHHHHS-CCCHHHHHHHHH---HTHHHHHHHHTGGGGGGCSEEEETGGGCHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhhh-CCCHHHHHHHHH---HhccHHHHHHhhhhhhcCcEEEecCCCChhHHHHHHHHHHHHHccch
Confidence 988731 11 123444333322 22111111 1122233332 3788889999999888776543
No 72
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.62 E-value=1.5e-15 Score=107.01 Aligned_cols=159 Identities=14% Similarity=0.233 Sum_probs=82.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCc
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKK 88 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~ 88 (196)
+++|+|+|++||||||+++.|++.++..+++.+.++++... ......+.. . |...........+. .+.. ...
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~~--~~i~~i~~~-~--g~~~~~~~~~~~l~-~l~~--~~~ 75 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG--ADVGWVFDL-E--GEEGFRDREEKVIN-ELTE--KQG 75 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHT--SCHHHHHHH-H--HHHHHHHHHHHHHH-HHHT--SSS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHhC--cCHHHHHHH-H--hHHHHHHHHHHHHH-HHHh--CCC
Confidence 46899999999999999999999999999998887765321 111111110 0 00000000111222 2222 233
Q ss_pred EEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCC----CCc-HHHHHHHHHHHHhchHhHHH
Q 029287 89 FLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRV----DDN-IDTVRKRLQVFKALNLPVIN 160 (196)
Q Consensus 89 ~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~ 160 (196)
+++. +.+.....+..+. ..++++|+++|++++.+|+.+|. .|. .+. .+.++.+..... +
T Consensus 76 ~v~~~~~~~~~~~~~~~~l~-----~~~~~i~l~~~~~~l~~R~~~r~-~r~~~~~~~~~~~~~~~~~~~r~----~--- 142 (173)
T 1kag_A 76 IVLATGGGSVKSRETRNRLS-----ARGVVVYLETTIEKQLARTQRDK-KRPLLHVETPPREVLEALANERN----P--- 142 (173)
T ss_dssp EEEECCTTGGGSHHHHHHHH-----HHSEEEECCCCHHHHHSCC-------CCSSSSCCCHHHHHHHHHHHH----H---
T ss_pred eEEECCCeEEecHHHHHHHH-----hCCEEEEEeCCHHHHHHHHhCCC-CCCCCCCCCchHHHHHHHHHHHH----H---
Confidence 4443 2222333333332 24678999999999999998863 121 122 444443322111 1
Q ss_pred HHHhcCcEEEEeCC-CCHhHHHHHHHHHHH
Q 029287 161 YYARRGKLYTINAV-GTVDEIFEQVRAVFA 189 (196)
Q Consensus 161 ~~~~~~~~~~I~~~-~~~~~v~~~i~~~i~ 189 (196)
.|.... .++||++ .+++++.++|...+.
T Consensus 143 ~~~~~a-~~~id~~~~~~~~~~~~i~~~l~ 171 (173)
T 1kag_A 143 LYEEIA-DVTIRTDDQSAKVVANQIIHMLE 171 (173)
T ss_dssp HHHHHC-SEEC-----CHHHHHHHHHHHHC
T ss_pred HHHhhC-CEEEECCCCCHHHHHHHHHHHHH
Confidence 122222 3567776 799999998877653
No 73
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.62 E-value=1.1e-14 Score=107.71 Aligned_cols=172 Identities=15% Similarity=0.281 Sum_probs=96.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHH----hcCCh--hhHHHHHHh------------------
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREI----ASNSE--YGTTILNTI------------------ 62 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~----~~~~~--~~~~~~~~l------------------ 62 (196)
..+++|+|+|++||||||+++.|++.+|+.+++.|++++... ..+.+ ....+.+.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~ 93 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQLVF 93 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCCEEEEETTTEEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCCcccHHHHHHHHHhccccccccCCccceEe
Confidence 456799999999999999999999999999999999987632 12222 111111111
Q ss_pred hcCCC----CCHHHHH---------HHHHHHH----h-cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 63 KEGKI----VPSEVTV---------SLIQKEM----E-SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 63 ~~~~~----~~~~~~~---------~~i~~~l----~-~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
..|.. +....+. +.+...+ . ...+.++|+++..... .+...++++|||++|+++
T Consensus 94 ~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~~~~~~~v~~g~~~~~--------~~l~~~d~vi~L~a~~e~ 165 (236)
T 1q3t_A 94 VGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVMDGRDIGT--------VVLPQAELKIFLVASVDE 165 (236)
T ss_dssp ETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCEEEECSSCSS--------SSGGGCSEEEEEECCHHH
T ss_pred ECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHhcccCCEEEECCcchh--------hhccCCCEEEEEECCHHH
Confidence 12221 1111111 1111111 1 1124567888875421 011256899999999999
Q ss_pred HHHHHh----hccCCCCCCcHHHHHHHHHH--HHhchHhHHHHHHhcCcEEEEeCCC-CHhHHHHHHHHHHHh
Q 029287 125 MVNRVL----NRNEGRVDDNIDTVRKRLQV--FKALNLPVINYYARRGKLYTINAVG-TVDEIFEQVRAVFAA 190 (196)
Q Consensus 125 ~~~Rl~----~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~I~~~~-~~~~v~~~i~~~i~~ 190 (196)
+.+|+. +| ++ ..+.+.+.+++.. +..........+ .....++||+++ +++++.++|.+.+..
T Consensus 166 ~~~R~~~~~~~R--~~-~~~~e~~~~~i~~R~~~~~~~~~~p~~-~~~d~~vId~~~~s~eev~~~I~~~l~~ 234 (236)
T 1q3t_A 166 RAERRYKENIAK--GI-ETDLETLKKEIAARDYKDSHRETSPLK-QAEDAVYLDTTGLNIQEVVEKIKAEAEK 234 (236)
T ss_dssp HHHHHHHHHHHT--TC-CCCHHHHHHHHHHHHHHHTTCSSSCCS-CCTTCEEEECSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CC-CCCHHHHHHHHHHHhhhhhhccccccc-ccCCEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 999983 34 22 2233333332221 111100000011 112346788884 999999999887754
No 74
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.62 E-value=6.1e-15 Score=109.76 Aligned_cols=169 Identities=17% Similarity=0.178 Sum_probs=92.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCCCc
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE-GKIVPSEVTVSLIQKEMESSDSKK 88 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~i~~~l~~~~~~~ 88 (196)
.+|+|+|++||||||+++.|++.+|+.+++.+.+++.... +.. +.+.... |...+.......+.+.... ....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~-g~~----i~~i~~~~ge~~fr~~e~~~l~~l~~~-~~~~ 122 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMK-GTS----VAEIFEHFGESVFREKETEALKKLSLM-YHQV 122 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHST-TSC----HHHHHHHHCHHHHHHHHHHHHHHHHHH-CSSE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhc-Ccc----HHHHHHHhCcHHHHHHHHHHHHHHHhh-cCCc
Confidence 5788999999999999999999999999999988876531 111 2222211 2111112222233333322 1233
Q ss_pred EEEe--CCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc-CCCCCC-------cHHHHHHHH-HHHHhchHh
Q 029287 89 FLID--GFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN-EGRVDD-------NIDTVRKRL-QVFKALNLP 157 (196)
Q Consensus 89 ~iid--~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~-~~~~~~-------~~~~~~~~~-~~~~~~~~~ 157 (196)
+|.. |.+.....+..+ . .+++|||++|++++.+|+.++. ..|.-. ..+...+++ ..|...
T Consensus 123 Via~GgG~v~~~~~~~~l----~--~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR--- 193 (250)
T 3nwj_A 123 VVSTGGGAVIRPINWKYM----H--KGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDAR--- 193 (250)
T ss_dssp EEECCGGGGGSHHHHHHH----T--TSEEEEEECCHHHHHHHHHC----------------CHHHHHHHHHHHHHHH---
T ss_pred EEecCCCeecCHHHHHHH----h--CCcEEEEECCHHHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHHHHHH---
Confidence 4433 343333443333 1 3789999999999999998631 122211 111111222 223332
Q ss_pred HHHHHHhcCcEEEE----------e-CCCCHhHHHHHHHHHHHhhhhh
Q 029287 158 VINYYARRGKLYTI----------N-AVGTVDEIFEQVRAVFAALKLV 194 (196)
Q Consensus 158 ~~~~~~~~~~~~~I----------~-~~~~~~~v~~~i~~~i~~~~~~ 194 (196)
...|.....++.+ | .+.+++++.+.|.+.+..+++.
T Consensus 194 -~~lY~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~~~~ 240 (250)
T 3nwj_A 194 -GEAYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYLEK 240 (250)
T ss_dssp -HHHHTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHHHT
T ss_pred -HHHHhhCCEEEEecccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence 2223332223222 4 3578999999999888776643
No 75
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.62 E-value=4.1e-14 Score=105.65 Aligned_cols=174 Identities=16% Similarity=0.235 Sum_probs=92.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHH----hcCC-----hhhHHHHHHhhc--------------C
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREI----ASNS-----EYGTTILNTIKE--------------G 65 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~----~~~~-----~~~~~~~~~l~~--------------~ 65 (196)
..+|+|+|++||||||+++.|++.+|+.+++.|.+++... ..+. .....+...+.. +
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 106 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVILEG 106 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEECC
Confidence 3689999999999999999999999999999999985432 1111 111112211000 0
Q ss_pred CCCCH----H-------------HHHHHHHHHHh-cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHH
Q 029287 66 KIVPS----E-------------VTVSLIQKEME-SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVN 127 (196)
Q Consensus 66 ~~~~~----~-------------~~~~~i~~~l~-~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~ 127 (196)
..+.+ . .+...+..... .....++|+++-..+. .+.+..++.|||++|++++.+
T Consensus 107 ~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~~~~~V~~gr~~~~--------~v~~~~~~~ifl~A~~e~r~~ 178 (252)
T 4e22_A 107 EDVSNEIRTETVGNTASQAAAFPRVREALLRRQRAFREAPGLIADGRDMGT--------IVFPDAPVKIFLDASSQERAH 178 (252)
T ss_dssp EECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHHTTCCSSCEEEEESSCCC--------CCSTTCSEEEEEECCHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhCCCEEEEeceece--------eecCCCCEEEEEECCHHHHHH
Confidence 00100 0 11111112111 2234566777532110 012356899999999999999
Q ss_pred HHhhccC-CCCCCcHHHHHHHHHHHHhchHhHHHHHHh---cCcEEEEeCCC-CHhHHHHHHHHHHHhhh
Q 029287 128 RVLNRNE-GRVDDNIDTVRKRLQVFKALNLPVINYYAR---RGKLYTINAVG-TVDEIFEQVRAVFAALK 192 (196)
Q Consensus 128 Rl~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~I~~~~-~~~~v~~~i~~~i~~~~ 192 (196)
|+.+... .+...+.+.+.+++..-..... ....++ ....++||+++ +++++.+.|.+.+....
T Consensus 179 R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~--~r~~~pl~~~~d~~~Idts~~~~eev~~~I~~~i~~~~ 246 (252)
T 4e22_A 179 RRMLQLQERGFNVNFERLLAEIQERDNRDR--NRSVAPLVPAADALVLDSTSMSIEQVIEQALAYAQRIL 246 (252)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHC--------------CCCCCTTEEEEECSSSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHhh--hccccchhccCCeEEEECcCCCHHHHHHHHHHHHHHHh
Confidence 9875210 0122233333332211111000 011122 12346788765 89999999988886653
No 76
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.58 E-value=4e-14 Score=100.90 Aligned_cols=160 Identities=14% Similarity=0.187 Sum_probs=88.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhC-----CceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHH------
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYG-----LTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVS------ 75 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------ 75 (196)
..+++|+|+|++||||||+++.|++.++ +.+++.+.+ +..+... ..........
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~-~~~~~~~--------------~~~~~~~r~~~~~~~~ 75 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA-RTTVSEG--------------AGFTREERLRHLKRIA 75 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH-HTTTTTT--------------CCCCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH-HHHHhhc--------------cCCChhhHHHHHHHHH
Confidence 3457899999999999999999999874 234554433 3221110 1111111111
Q ss_pred HHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHh--CCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHh
Q 029287 76 LIQKEMESSDSKKFLIDGFPRSEENRAAFERIM--GAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKA 153 (196)
Q Consensus 76 ~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~--~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~ 153 (196)
.+...+. ..+..+++|++......+..+.... ...|+.+||||+|++++.+|+.++. +.........
T Consensus 76 ~~~~~~~-~~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~~----------~~~~~~~~~~ 144 (186)
T 2yvu_A 76 WIARLLA-RNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKGL----------YKKALKGELE 144 (186)
T ss_dssp HHHHHHH-TTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHHH----------HHHHHTTCCS
T ss_pred HHHHHHH-hCCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhhh----------hhHHhhcchh
Confidence 1111111 2345567788765544443333322 2258999999999999999975320 0000000000
Q ss_pred chHhHHHHHHh-cCcEEEEeCC-CCHhHHHHHHHHHHHhhh
Q 029287 154 LNLPVINYYAR-RGKLYTINAV-GTVDEIFEQVRAVFAALK 192 (196)
Q Consensus 154 ~~~~~~~~~~~-~~~~~~I~~~-~~~~~v~~~i~~~i~~~~ 192 (196)
........|.+ ....++||++ .+++++.++|.+.+...+
T Consensus 145 ~~~~~~~~y~~~~~~~~~Id~~~~~~~ev~~~I~~~l~~~~ 185 (186)
T 2yvu_A 145 NFTGITDPYEPPENPQLVLDTESNTIEHNVSYLYSLVKAVI 185 (186)
T ss_dssp SCHHHHSCCCCCSSCSEEEETTTSCHHHHHHHHHHHHHHHC
T ss_pred hhhhhhhcccCCCCCcEEEECCCCCHHHHHHHHHHHHHHhc
Confidence 00001111221 1245789987 799999999988887654
No 77
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.58 E-value=1.2e-14 Score=105.83 Aligned_cols=161 Identities=12% Similarity=0.140 Sum_probs=87.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhC------CceechhHHHHHHHhcCChhh-HHHHHHhhcCCCCCHHHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYG------LTHLSAGELLRREIASNSEYG-TTILNTIKEGKIVPSEVTVSLIQKE 80 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~------~~~i~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~i~~~ 80 (196)
.+++|+|+|++||||||+++.|++.++ ..+++.+.+ +..+....... ..-...+ ......+...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~-r~~l~~~~~~~~~~r~~~~--------~~~~~~~~~~ 94 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI-RFGLNKDLGFSEADRNENI--------RRIAEVAKLF 94 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH-TTTTTTTCCSSHHHHHHHH--------HHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH-hhhhccccCCCHHHHHHHH--------HHHHHHHHHH
Confidence 457899999999999999999999876 666665333 22211100000 0000000 0011112233
Q ss_pred HhcCCCCcEEEeCCCCC-HHHHHHHHHHh--------CCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 029287 81 MESSDSKKFLIDGFPRS-EENRAAFERIM--------GAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVF 151 (196)
Q Consensus 81 l~~~~~~~~iid~~~~~-~~~~~~~~~~~--------~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~ 151 (196)
+. .+..+|+| |... ...+..+.... ...|+.+||||+|++++.+|+. | ..+.+....|
T Consensus 95 l~--~g~~VI~d-~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~~-r---------~~~~~~r~~~ 161 (211)
T 1m7g_A 95 AD--SNSIAITS-FISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDP-K---------GLYKKAREGV 161 (211)
T ss_dssp HH--TTCEEEEE-CCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCT-T---------CHHHHHHHTS
T ss_pred HH--CCCEEEEe-cCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhhh-H---------HHHHHHHhcc
Confidence 33 34567788 5432 23333333321 1367999999999999999951 1 0111111122
Q ss_pred HhchHhHHHHHHh-cCcEEEEeCCC-CHhHHHHHHHHHHHh
Q 029287 152 KALNLPVINYYAR-RGKLYTINAVG-TVDEIFEQVRAVFAA 190 (196)
Q Consensus 152 ~~~~~~~~~~~~~-~~~~~~I~~~~-~~~~v~~~i~~~i~~ 190 (196)
..........|.. ....++||+++ +++++.++|.+.+..
T Consensus 162 ~~~~~~~~~~y~~~~~~~~~IDt~~~s~eev~~~I~~~l~~ 202 (211)
T 1m7g_A 162 IKEFTGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDT 202 (211)
T ss_dssp SSSCBTTTBCCCCCSSCSEEEECSSSCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccCCCCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 2111111112222 12347899988 999999999888765
No 78
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=99.57 E-value=4.4e-15 Score=110.19 Aligned_cols=80 Identities=6% Similarity=0.139 Sum_probs=53.9
Q ss_pred CCCcEEEEeecChHHHHHHHhhccCCCCCCc---HHHHHHHHHHHHhchHh----H-HHHHHhcCcEEEEeCCCCHhHHH
Q 029287 110 AEPDIVLFFDCPEEEMVNRVLNRNEGRVDDN---IDTVRKRLQVFKALNLP----V-INYYARRGKLYTINAVGTVDEIF 181 (196)
Q Consensus 110 ~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~---~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~I~~~~~~~~v~ 181 (196)
..||++||||+|++++.+|+.+| ++..+. .+.++.....|..+..+ . .+.+ ....+++||++++++++.
T Consensus 148 ~~pd~~i~l~~~~~~~~~R~~~R--~r~~e~~~~~~~~~~v~~~y~~~~~~~~~p~~~~~~-~~~~~~~Id~~~~~~~v~ 224 (241)
T 2ocp_A 148 ITLHGFIYLQASPQVCLKRLYQR--AREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEAL-MNIPVLVLDVNDDFSEEV 224 (241)
T ss_dssp HCCCEEEEEECCHHHHHHHHHHS--CCTTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTG-GGCCEEEEECCSCTTTCH
T ss_pred cCCCEEEEEECCHHHHHHHHHhc--CCcccccCCHHHHHHHHHHHHHHHhhcccccccccc-CCCCEEEEECCCChhhCH
Confidence 37999999999999999999988 443332 45554444455543210 0 0011 356889999999998888
Q ss_pred HHHHHHHHhhh
Q 029287 182 EQVRAVFAALK 192 (196)
Q Consensus 182 ~~i~~~i~~~~ 192 (196)
+.+...+..+.
T Consensus 225 ~~i~~i~~~i~ 235 (241)
T 2ocp_A 225 TKQEDLMREVN 235 (241)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777766553
No 79
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.57 E-value=1.8e-14 Score=104.31 Aligned_cols=171 Identities=16% Similarity=0.150 Sum_probs=90.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhCC-ceechhHHHHHHHhc---C----ChhhHHHHHHhhcCCCCCHH-------
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYGL-THLSAGELLRREIAS---N----SEYGTTILNTIKEGKIVPSE------- 71 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~-~~i~~~~~~~~~~~~---~----~~~~~~~~~~l~~~~~~~~~------- 71 (196)
..+++|+|.|||||||||+++.|++.++. .....+...|..... + .-....+...+..+......
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFY 89 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCee
Confidence 45678899999999999999999998742 222211111110000 0 00011222222222221100
Q ss_pred -HHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCC-CcEEEEee-cChHHHHHHHhhccCCCCCCcHHHHHHHH
Q 029287 72 -VTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAE-PDIVLFFD-CPEEEMVNRVLNRNEGRVDDNIDTVRKRL 148 (196)
Q Consensus 72 -~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~-p~~~i~ld-~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~ 148 (196)
.....+...+. .+..+|+|..+.+.. .+.. .... ..++|||+ +|++++.+|+.+|. .++.+.+++++
T Consensus 90 ~~~~~~i~~~l~--~g~~vi~d~~~~~~~---~l~~-~~~~~~~~~i~l~~~s~e~l~~Rl~~R~----~~~~~~i~~rl 159 (204)
T 2qor_A 90 GTLKSEYDLAVG--EGKICLFEMNINGVK---QLKE-SKHIQDGIYIFVKPPSIDILLGRLKNRN----TEKPEEINKRM 159 (204)
T ss_dssp EEEHHHHHHHHH--TTCEEEEECCHHHHH---HHHH-CSSCSCCEEEEEECSCHHHHHHHHHTCT----TSCHHHHHHHH
T ss_pred cCCHHHHHHHHH--cCCeEEEEECHHHHH---HHHH-hcCCCCeEEEEEcCCCHHHHHHHHHHcC----CCCHHHHHHHH
Confidence 00123344444 356788887553322 2221 1110 23779999 99999999998872 23556666665
Q ss_pred HHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287 149 QVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192 (196)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~ 192 (196)
........+. +......+ |+++ +++++.++|.+.+...+
T Consensus 160 ~~~~~~~~~~---~~~~~d~v-i~n~-~~e~~~~~i~~~i~~~~ 198 (204)
T 2qor_A 160 QELTREMDEA---DKVGFNYF-IVND-DLARTYAELREYLLGSY 198 (204)
T ss_dssp HHHHHHHHHH---HHHTCSEE-EECS-SHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHh---hhccCcEE-EECc-CHHHHHHHHHHHHHHHh
Confidence 5443211110 23333444 4445 89999999988886543
No 80
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.56 E-value=4.1e-14 Score=103.34 Aligned_cols=169 Identities=14% Similarity=0.264 Sum_probs=93.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH----HhcCChhhHHHHHH-------h-----------hcCC
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE----IASNSEYGTTILNT-------I-----------KEGK 66 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~-------l-----------~~~~ 66 (196)
+++|+|+|++||||||+++.|++.+|+.+++.|.+++.. ...+. +..+.+. + ..|.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~f~~~~~~g~~i~~~g~ 80 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNK--TEDFAKLVDQTTLDLTYKADKGQCVILDNE 80 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTS--CSCHHHHHHTCCEEEEECTTCCEEEEETTE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhh--hHHHHHHHHhccccccccccccceEEeCCc
Confidence 578999999999999999999999999999999998753 22221 1112221 0 1121
Q ss_pred CC----CHHHH---------HHHHHHHH----h-cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHH
Q 029287 67 IV----PSEVT---------VSLIQKEM----E-SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNR 128 (196)
Q Consensus 67 ~~----~~~~~---------~~~i~~~l----~-~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~R 128 (196)
.. ..... ++.+.+.+ . ...+.++|+++-... ..+...++++|||++|++++.+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~vi~g~~~~--------~~~~~~~~~vi~l~a~~e~~~~R 152 (219)
T 2h92_A 81 DVTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELAAEKGIVMDGRDIG--------TVVLPDADLKVYMIASVEERAER 152 (219)
T ss_dssp ECGGGSSSSHHHHHHHHHHTSHHHHHHHHHHHHHHHTTCCEEEEESSCC--------CCCCTTCSEEEEEECCHHHHHHH
T ss_pred cchhhcCcHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcEEEEcCCcc--------ceecCCCCEEEEEECCHHHHHHH
Confidence 11 00000 11111111 0 112345677763210 11334578999999999999999
Q ss_pred Hhhcc--CCCCCCcHHHHHHHHHHH--HhchHhHHHHHHhcCcEEEEeCCC-CHhHHHHHHHHHHH
Q 029287 129 VLNRN--EGRVDDNIDTVRKRLQVF--KALNLPVINYYARRGKLYTINAVG-TVDEIFEQVRAVFA 189 (196)
Q Consensus 129 l~~r~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~I~~~~-~~~~v~~~i~~~i~ 189 (196)
+.++. ++. ..+.+.+.+++..- ....+.....+ .....++||+++ +++++.++|.+.+.
T Consensus 153 ~~~~~~~r~~-~~~~e~~~~~~~~r~~~d~~r~~~~~~-~~~d~~~Id~~~~~~ee~~~~I~~~l~ 216 (219)
T 2h92_A 153 RYKDNQLRGI-ESNFEDLKRDIEARDQYDMNREISPLR-KADDAVTLDTTGKSIEEVTDEILAMVS 216 (219)
T ss_dssp HHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHCSSSCSC-CCTTCEEEECTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCc-ccCHHHHHHHHHHHHHhhhhhhccccc-cCCCeEEEECCCCCHHHHHHHHHHHHh
Confidence 75421 122 22444444433211 11100000111 123446788774 99999999887764
No 81
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.55 E-value=2.2e-13 Score=96.22 Aligned_cols=159 Identities=13% Similarity=0.095 Sum_probs=83.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCcee--chhHHHHHHHhcCC---hhhHHHHHHhhcCCCC-CH--HHH----HHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHL--SAGELLRREIASNS---EYGTTILNTIKEGKIV-PS--EVT----VSL 76 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i--~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~-~~--~~~----~~~ 76 (196)
+++|+|.|+|||||||+++.|++.++..++ +.|.+... ..... ..+..+. ..+... .. ... ...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 78 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEA-MPLKMQSAEGGIEFD---ADGGVSIGPEFRALEGAWAEG 78 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHH-SCGGGGTSTTSEEEC---TTSCEEECHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhh-cchhhccchhhcccc---CCCccccchhHHHHHHHHHHH
Confidence 468899999999999999999999876655 46555432 11100 0000000 000000 00 011 112
Q ss_pred HHHHHhcCCCCcEEEeCCCC-CHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhch
Q 029287 77 IQKEMESSDSKKFLIDGFPR-SEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALN 155 (196)
Q Consensus 77 i~~~l~~~~~~~~iid~~~~-~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~ 155 (196)
+...+. .+..+|+++... ....+..+...+...+..+|||++|++++.+|+.+|. .+... .... .+...
T Consensus 79 ~~~~~~--~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r~-~~~~~---~~~~---~~~~~- 148 (178)
T 1qhx_A 79 VVAMAR--AGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARG-DRVAG---MAAK---QAYVV- 148 (178)
T ss_dssp HHHHHH--TTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTS-SSCTT---HHHH---HTTGG-
T ss_pred HHHHHh--cCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhhC-Ccccc---hhhh---hchhh-
Confidence 222222 244677887543 3232333333343345567889999999999999873 22211 1111 11111
Q ss_pred HhHHHHHHhcCcEEEEeCCC-CHhHHHHHHHHH
Q 029287 156 LPVINYYARRGKLYTINAVG-TVDEIFEQVRAV 187 (196)
Q Consensus 156 ~~~~~~~~~~~~~~~I~~~~-~~~~v~~~i~~~ 187 (196)
+......++||++. +++++.+.|.+.
T Consensus 149 ------~~~~~~d~~idt~~~~~~~~~~~I~~~ 175 (178)
T 1qhx_A 149 ------HEGVEYDVEVDTTHKESIECAWAIAAH 175 (178)
T ss_dssp ------GTTCCCSEEEETTSSCHHHHHHHHHTT
T ss_pred ------ccCCCCcEEEECCCCCHHHHHHHHHHH
Confidence 01112346788764 889888887653
No 82
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.52 E-value=4.9e-13 Score=94.64 Aligned_cols=113 Identities=16% Similarity=0.217 Sum_probs=60.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHh---CCceechh-HHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHH--HHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNY---GLTHLSAG-ELLRREIASNSEYGTTILNTIKEGKIVPSEVTVS--LIQKEM 81 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~---~~~~i~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~i~~~l 81 (196)
..++|+|+|++||||||+++.|++.+ |+.++..+ +.+++.+.........- ....... .....+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 73 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPED----------REENVRRIAEVAKLF 73 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHH----------HHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhcccccccc----------HHHHHHHHHHHHHHH
Confidence 45789999999999999999999988 87766432 33332111100000000 0001111 111122
Q ss_pred hcCCCCcEEEeCCCCC-HHHHHHHHHH--hCCCCcEEEEeecChHHHHHHHhhc
Q 029287 82 ESSDSKKFLIDGFPRS-EENRAAFERI--MGAEPDIVLFFDCPEEEMVNRVLNR 132 (196)
Q Consensus 82 ~~~~~~~~iid~~~~~-~~~~~~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~~r 132 (196)
.. .+..++.+ +.+. ...+..+... ....|+.+|||++|++++.+|+.++
T Consensus 74 ~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~ 125 (179)
T 2pez_A 74 AD-AGLVCITS-FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKG 125 (179)
T ss_dssp HH-TTCEEEEE-CCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTS
T ss_pred HH-CCCEEEEe-cCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhh
Confidence 12 23333334 4332 2222222221 1236889999999999999998653
No 83
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=99.49 E-value=2.3e-15 Score=109.53 Aligned_cols=168 Identities=16% Similarity=0.202 Sum_probs=86.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChh-hHHHHHHhhc--CCCCCHHHH------------H
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEY-GTTILNTIKE--GKIVPSEVT------------V 74 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~l~~--~~~~~~~~~------------~ 74 (196)
++|+|+|++||||||+++.|++.++...++...+ +. .....+. +..++..+.. +....+... .
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~-~~-~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL-AF-PRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAV 78 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEE-ES-SEEEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHHEEH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE-ee-cCCCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHhhhH
Confidence 4789999999999999999999985322211000 00 0000011 1122222211 000001100 0
Q ss_pred HHHHHHHhcCCCCcEEEeCCCCCHH--HH-----------HHHHHHh-----C-CCCcEEEEeecChHHHHHHHhhccCC
Q 029287 75 SLIQKEMESSDSKKFLIDGFPRSEE--NR-----------AAFERIM-----G-AEPDIVLFFDCPEEEMVNRVLNRNEG 135 (196)
Q Consensus 75 ~~i~~~l~~~~~~~~iid~~~~~~~--~~-----------~~~~~~~-----~-~~p~~~i~ld~~~~~~~~Rl~~r~~~ 135 (196)
..+...+ ..+..+|+|+++.+.. +. ..+...+ . +.||.+|||++|++++.+|+.+|...
T Consensus 79 ~~i~~~l--~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~ 156 (214)
T 1gtv_A 79 HTIQGLC--RGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQR 156 (214)
T ss_dssp HHHHHEE--EEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred HHHHHHh--hCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHccccc
Confidence 1112222 1346788999886531 11 1112221 2 37999999999999999999988421
Q ss_pred -------CCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHH
Q 029287 136 -------RVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRA 186 (196)
Q Consensus 136 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~ 186 (196)
+.+...+..+.....|.... ..+ ....+++||++++++++.++|.+
T Consensus 157 ~~~~~~d~~e~~~~~~~~~~~~~~~~~----~~~-~~~~~~vId~~~~~~~v~~~i~~ 209 (214)
T 1gtv_A 157 DPGRARDNYERDAELQQRTGAVYAELA----AQG-WGGRWLVVGADVDPGRLAATLAP 209 (214)
T ss_dssp BBEEEEEEEEEEHHHHHHHHHHHHHHH----HEE-EEEEEEEEEEEEBHHHHHHHHC-
T ss_pred ccccccccccccHHHHHHHHHHHHHHH----HhC-CCCCEEEEeCCCCHHHHHHHhcC
Confidence 11111233332223343331 100 01467889999999999888753
No 84
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.48 E-value=6.9e-12 Score=90.43 Aligned_cols=169 Identities=17% Similarity=0.173 Sum_probs=86.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHh-c--CChhhHHHHHHh---hc----C----CCCCH---H
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIA-S--NSEYGTTILNTI---KE----G----KIVPS---E 71 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~-~--~~~~~~~~~~~l---~~----~----~~~~~---~ 71 (196)
.++|+|.|++||||||+++.|++++|+.+++ +++++.... . ..+.....-+.. .. + ....+ .
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDGRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDIAI 84 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC---------------------------------CHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhcCCCHHHHHHHhhhchhHHHHHhccccccccccHHHHH
Confidence 3689999999999999999999999999999 777653210 0 001000000000 00 0 00000 1
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 029287 72 VTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVF 151 (196)
Q Consensus 72 ~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~ 151 (196)
...+.+.+.... ....+|++|-..+ ..+. .....+.|||++|++++.+|+.++. +. +.+...+.+...
T Consensus 85 ~~~~~i~~la~~-~~~~~Vi~Gr~g~----~vl~---~~~~~~~V~L~A~~e~r~~R~~~~~-~~---~~~~~~~~i~~~ 152 (201)
T 3fdi_A 85 RQFNFIRKKANE-EKESFVIVGRCAE----EILS---DNPNMISAFILGDKDTKTKRVMERE-GV---DEKTALNMMKKM 152 (201)
T ss_dssp HHHHHHHHHHHT-SCCCEEEESTTHH----HHTT---TCTTEEEEEEEECHHHHHHHHHHHH-TC---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh-cCCCEEEEECCcc----hhcC---CCCCeEEEEEECCHHHHHHHHHHHh-CC---CHHHHHHHHHHH
Confidence 122223332200 1234556543211 1110 0113588999999999999998763 22 223333332222
Q ss_pred HhchHhHHHHHHh------cCcEEEEeCC-CCHhHHHHHHHHHHHh
Q 029287 152 KALNLPVINYYAR------RGKLYTINAV-GTVDEIFEQVRAVFAA 190 (196)
Q Consensus 152 ~~~~~~~~~~~~~------~~~~~~I~~~-~~~~~v~~~i~~~i~~ 190 (196)
..........+.. ...-++||++ .+++++.+.|.+.++.
T Consensus 153 d~~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i~~ 198 (201)
T 3fdi_A 153 DKMRKVYHNFYCESKWGDSRTYDICIKIGKVDVDTATDMIIKYIDS 198 (201)
T ss_dssp HHHHHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHHHHHHHHHHH
Confidence 2222222222211 1123567754 6899999998877753
No 85
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.48 E-value=3e-12 Score=94.07 Aligned_cols=40 Identities=25% Similarity=0.470 Sum_probs=36.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE 47 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~ 47 (196)
.+++|+|.||+||||||+++.|++.+|+.+++.|.+++..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~ 47 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIA 47 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHH
Confidence 4679999999999999999999999999999999987653
No 86
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.44 E-value=1.7e-12 Score=93.56 Aligned_cols=157 Identities=15% Similarity=0.134 Sum_probs=84.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHh---CCc--eechhHHHHHHHhcCChh-hHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNY---GLT--HLSAGELLRREIASNSEY-GTTILNTIKEGKIVPSEVTVSLIQKEM 81 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~---~~~--~i~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~i~~~l 81 (196)
.+.+|+|.|++||||||+++.|++.+ |.. +++.+++.. .+...... .......+ .....+...+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~-~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 93 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRH-GLNRDLSFKAEDRAENI---------RRVGEVAKLF 93 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT-TTTTTCCSSHHHHHHHH---------HHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhh-HhhcccCcChHHHHHHH---------HHHHHHHHHH
Confidence 45789999999999999999999988 655 677654421 11100000 00000000 0011112222
Q ss_pred hcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHH------hhccCCCCCCcHHHHHHHHHHHHhch
Q 029287 82 ESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRV------LNRNEGRVDDNIDTVRKRLQVFKALN 155 (196)
Q Consensus 82 ~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl------~~r~~~~~~~~~~~~~~~~~~~~~~~ 155 (196)
.. .+..+++.........+..+.......+.++|||++|++++.+|+ ..|......... +. .
T Consensus 94 ~~-~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~~~~l~~~~r~~~~~~~~~--~~-------~-- 161 (200)
T 3uie_A 94 AD-AGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGFTG--ID-------D-- 161 (200)
T ss_dssp HH-TTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHCTTSHHHHHHTTSSCSCBT--TT-------B--
T ss_pred Hh-CCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhcccchHHHHhcCCCCCCCC--CC-------C--
Confidence 21 244556665544445555555444333455699999999999997 222111111000 00 0
Q ss_pred HhHHHHHHh-cCcEEEEeCC--CCHhHHHHHHHHHHHhh
Q 029287 156 LPVINYYAR-RGKLYTINAV--GTVDEIFEQVRAVFAAL 191 (196)
Q Consensus 156 ~~~~~~~~~-~~~~~~I~~~--~~~~~v~~~i~~~i~~~ 191 (196)
.|.. ....++||++ .+++++.+.|.+.+...
T Consensus 162 -----~~~~~~~~~~~idt~~~~~~~e~v~~i~~~l~~~ 195 (200)
T 3uie_A 162 -----PYEPPLNCEISLGREGGTSPIEMAEKVVGYLDNK 195 (200)
T ss_dssp -----CCCCCSSCSEEECCSSCCCHHHHHHHHHHHHHHH
T ss_pred -----cCcCCCCCCEEEecCCCCCHHHHHHHHHHHHHHc
Confidence 0111 1234678865 49999999988877553
No 87
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.42 E-value=2.2e-12 Score=102.91 Aligned_cols=122 Identities=19% Similarity=0.183 Sum_probs=83.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCC
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDS 86 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~ 86 (196)
+.+.+|+|.|+|||||||+++.|++.+|+.+++.|++- . .......+...+. .+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~--------~----------------~~~~~~~~~~~l~--~g 309 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG--------S----------------WQRCVSSCQAALR--QG 309 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC--------S----------------HHHHHHHHHHHHH--TT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH--------H----------------HHHHHHHHHHHHh--cC
Confidence 45678999999999999999999999999999987651 0 1112233344444 35
Q ss_pred CcEEEeCCCCCHHHHHHHHHHh--CCCCcEEEEeecChHHHHHHHhhccC---CCCCCcHHHHHHHHHHHHhc
Q 029287 87 KKFLIDGFPRSEENRAAFERIM--GAEPDIVLFFDCPEEEMVNRVLNRNE---GRVDDNIDTVRKRLQVFKAL 154 (196)
Q Consensus 87 ~~~iid~~~~~~~~~~~~~~~~--~~~p~~~i~ld~~~~~~~~Rl~~r~~---~~~~~~~~~~~~~~~~~~~~ 154 (196)
..+|+|+......++..+.... ...+-.+|||++|.+++.+|+.+|.. .+.....+.+......|+..
T Consensus 310 ~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~~~~~~~~~~~~~~~~~~~~~e~P 382 (416)
T 3zvl_A 310 KRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQFEPP 382 (416)
T ss_dssp CCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHCCCC
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHhcCCC
Confidence 5688999887766665554432 12345679999999999999998842 11233456666555555554
No 88
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.41 E-value=9.9e-12 Score=94.41 Aligned_cols=121 Identities=13% Similarity=0.227 Sum_probs=70.6
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHHHh--CCceechhHHHHHHHhcCChhhHHHHHHhhcC----CCCCHHHHHHHHHH
Q 029287 6 GKGPFICFVLGGPGSGKGTQCAKIVKNY--GLTHLSAGELLRREIASNSEYGTTILNTIKEG----KIVPSEVTVSLIQK 79 (196)
Q Consensus 6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~i~~ 79 (196)
...+.+|+|.|+|||||||+++.|++.+ +..+++.|.+ +..... ............ ...........+..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~-R~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~ 105 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF-KQQHPN---FDELVKLYEKDVVKHVTPYSNRMTEAIISR 105 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH-HTTSTT---HHHHHHHHGGGCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh-HHhchh---hHHHHHHccchhhhhhhHHHHHHHHHHHHH
Confidence 3456899999999999999999999998 7788887544 321110 000011110000 00011112233444
Q ss_pred HHhcCCCCcEEEeCCCCCHHHHHHHHHHh-C-CCCcEEEEeecChHHH----HHHHhhc
Q 029287 80 EMESSDSKKFLIDGFPRSEENRAAFERIM-G-AEPDIVLFFDCPEEEM----VNRVLNR 132 (196)
Q Consensus 80 ~l~~~~~~~~iid~~~~~~~~~~~~~~~~-~-~~p~~~i~ld~~~~~~----~~Rl~~r 132 (196)
.+.. +..+|+|+...+..++..+...+ . ..+..+++|++|++.+ .+|+..|
T Consensus 106 ~l~~--g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R 162 (287)
T 1gvn_B 106 LSDQ--GYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETM 162 (287)
T ss_dssp HHHH--TCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred HHhc--CCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHH
Confidence 4443 56688998887755444443332 1 1233458899999999 7887655
No 89
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.40 E-value=5.4e-11 Score=86.96 Aligned_cols=170 Identities=16% Similarity=0.191 Sum_probs=87.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHh-cCCh------hhHHHHH-H---hhcCC-----------
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIA-SNSE------YGTTILN-T---IKEGK----------- 66 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~-~~~~------~~~~~~~-~---l~~~~----------- 66 (196)
.++|+|.|++||||||+++.|++++|+.+++ ++++..... .+-. .+..... . +..+.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHSKPSPN 92 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHHCC-------------------------------------
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHHHcCCCHHHHHHHHhhccccHHHHHhcccccccccccccc
Confidence 4799999999999999999999999999999 555543221 1100 0110000 0 00000
Q ss_pred -CC-CHHHH----HHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCC-cEEEEeecChHHHHHHHhhccCCCCCC
Q 029287 67 -IV-PSEVT----VSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEP-DIVLFFDCPEEEMVNRVLNRNEGRVDD 139 (196)
Q Consensus 67 -~~-~~~~~----~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p-~~~i~ld~~~~~~~~Rl~~r~~~~~~~ 139 (196)
.. .+..+ .+.+.+... ....|+.|-..+ ..+. .....+ .+.|||++|++++.+|+.++. ++
T Consensus 93 ~~~~~~~~~f~~~~~~i~~la~---~~~~Vi~Grggg----~vl~-~~~~~~~~~~VfL~A~~e~r~~Ri~~~~-~~--- 160 (223)
T 3hdt_A 93 DKLTSPENLFKFQSEVMRELAE---SEPCIFVGRAAG----YVLD-QDEDIERLIRIFVYTDKVKKVQRVMEVD-CI--- 160 (223)
T ss_dssp -----HHHHHHHHHHHHHHHHH---HSCEEEESTTHH----HHHH-HCTTCCEEEEEEEECCHHHHHHHHHHHH-TC---
T ss_pred cccccHHHHHHHHHHHHHHHHh---CCCEEEEeCCcc----hhcc-cccCCCCeEEEEEECCHHHHHHHHHHhc-CC---
Confidence 00 01111 122222222 223455533211 1110 001123 588999999999999998763 22
Q ss_pred cHHHHHHHHHHHHhchHhHHHHHH------hcCcEEEEeCC-CCHhHHHHHHHHHHHhh
Q 029287 140 NIDTVRKRLQVFKALNLPVINYYA------RRGKLYTINAV-GTVDEIFEQVRAVFAAL 191 (196)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~I~~~-~~~~~v~~~i~~~i~~~ 191 (196)
..+...+.+........+...+|. ....-++||++ .+++++.+.|.+.++..
T Consensus 161 ~~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~eevv~~I~~~i~~~ 219 (223)
T 3hdt_A 161 DEERAKRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLEETAELIKAYIRLK 219 (223)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 223333333222223233333221 11233567765 58999999998887653
No 90
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.37 E-value=2.7e-11 Score=100.36 Aligned_cols=161 Identities=14% Similarity=0.225 Sum_probs=85.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHh---CCceechh-HHHHHHHhcCChhh-HHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNY---GLTHLSAG-ELLRREIASNSEYG-TTILNTIKEGKIVPSEVTVSLIQKEME 82 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~---~~~~i~~~-~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~i~~~l~ 82 (196)
++++|+|+|++||||||+++.|++.+ |+.++..+ +.++..+....... ..-.+.+ ..+...+...+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~--------r~i~eva~~~l~ 122 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENV--------RRIAEVAKLFAD 122 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHH--------HHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHH--------HHHHHHHHHHHh
Confidence 56889999999999999999999998 87765543 44443322111000 0000110 011111122222
Q ss_pred cCCCCcEEEeCCCCC-HHHHHHHHHHh--CCCCcEEEEeecChHHHHHHHhhcc--CCCCCCcHHHHHHHHHHHHhchHh
Q 029287 83 SSDSKKFLIDGFPRS-EENRAAFERIM--GAEPDIVLFFDCPEEEMVNRVLNRN--EGRVDDNIDTVRKRLQVFKALNLP 157 (196)
Q Consensus 83 ~~~~~~~iid~~~~~-~~~~~~~~~~~--~~~p~~~i~ld~~~~~~~~Rl~~r~--~~~~~~~~~~~~~~~~~~~~~~~~ 157 (196)
.+..++++ +... ...+..+...+ ...|+++||||+|++++.+|+.++. ..|... .. .|...
T Consensus 123 --~G~iVI~d-~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~aR~~~-~~-------~~~~~--- 188 (630)
T 1x6v_B 123 --AGLVCITS-FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGE-IK-------GFTGI--- 188 (630)
T ss_dssp --TTCEEEEE-CCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHHHTTC------------CBTT---
T ss_pred --CCCEEEEe-CchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchhhhhhh-HH-------HHHHh---
Confidence 24455555 3332 22233333322 2357889999999999999986421 011110 00 11111
Q ss_pred HHHHHHh-cCcEEEEeCC-CCHhHHHHHHHHHHHhh
Q 029287 158 VINYYAR-RGKLYTINAV-GTVDEIFEQVRAVFAAL 191 (196)
Q Consensus 158 ~~~~~~~-~~~~~~I~~~-~~~~~v~~~i~~~i~~~ 191 (196)
...|.. ...-++||++ .+++++.++|.+.+...
T Consensus 189 -~~~Ye~p~~~dlvIDts~~s~eevv~~Il~~L~~~ 223 (630)
T 1x6v_B 189 -DSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQER 223 (630)
T ss_dssp -TBCCCCCSSCSEEEETTSSCHHHHHHHHHHHHHHT
T ss_pred -hhhhcccCCCcEEEECCCCCHHHHHHHHHHHHHhc
Confidence 011111 1123678876 59999999998887653
No 91
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=99.36 E-value=5.4e-12 Score=97.19 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=34.4
Q ss_pred CCCcEEEEeecChHHHHHHHhhccCCCCC--CcHHHHHHHHHHHHhchH
Q 029287 110 AEPDIVLFFDCPEEEMVNRVLNRNEGRVD--DNIDTVRKRLQVFKALNL 156 (196)
Q Consensus 110 ~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~--~~~~~~~~~~~~~~~~~~ 156 (196)
..||++||||+|++++.+|+.+| +|.. .+.+.+++..+.|.....
T Consensus 156 ~~PDLtIyLd~~pe~~l~RI~~R--gR~~Eri~~eyl~~vr~~Y~~l~~ 202 (334)
T 1p6x_A 156 PQGGNIVVTTLNVEEHIRRLRTR--ARIGEQIDITLIATLRNVYFMLVN 202 (334)
T ss_dssp CTTEEEEEEECCHHHHHHHHHHH--SCTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCHHHHHHHHHhc--CCCcccCCHHHHHHHHHHHHHHHH
Confidence 56999999999999999999877 3322 255777776777877643
No 92
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.35 E-value=3.8e-12 Score=91.75 Aligned_cols=164 Identities=13% Similarity=0.175 Sum_probs=80.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH-------HhcCChhhHHHHHHhhcCCCC-----CH---HHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE-------IASNSEYGTTILNTIKEGKIV-----PS---EVT 73 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~-----~~---~~~ 73 (196)
..+++|+||+||||||++++|+..+....+....+.+.. ..........+......+... .. ...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYGTE 86 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEEE
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecccccch
Confidence 358999999999999999999977642222211111000 000001111122211111100 00 000
Q ss_pred HHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeec-ChHHHHHHHhhccCCCCCCcHHHHHHHHHHHH
Q 029287 74 VSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDC-PEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFK 152 (196)
Q Consensus 74 ~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~-~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~ 152 (196)
...+.+.+.. +..++++..+.+. ..+. .....+.. ||+.. |++++.+|+.+|. + ++.+.+.+++..+.
T Consensus 87 ~~~i~~~l~~--g~~vi~d~~~~~~---~~~~-~~~~~~~~-v~~~~~~~e~l~~Rl~~R~--~--~~~~~i~~rl~~~~ 155 (205)
T 3tr0_A 87 KDWVLRQLKA--GRDVLLEIDWQGA---RQIR-ELFPPALS-IFILPPSIEALRERLIKRR--Q--DDTAIIEQRLALAR 155 (205)
T ss_dssp HHHHHHHHHT--TCEEEEECCHHHH---HHHH-HHCTTCEE-EEEECSCHHHHHHHHHTCT--T--SCSSTHHHHHHHHH
T ss_pred HHHHHHHHHc--CCeEEEEECHHHH---HHHH-HhCCCcEE-EEEECcCHHHHHHHHHHhC--C--CCHHHHHHHHHHHH
Confidence 1233444443 4566777543221 1112 23334555 45544 6899999999883 2 23333444544442
Q ss_pred hchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHh
Q 029287 153 ALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAA 190 (196)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~ 190 (196)
.. ..+ .....++ |+++ +++++.+++.+.+..
T Consensus 156 ~~----~~~-~~~~d~v-i~n~-~~~~~~~~l~~~i~~ 186 (205)
T 3tr0_A 156 EE----MAH-YKEFDYL-VVND-NFDQAVQNLIHIISA 186 (205)
T ss_dssp HH----HTT-GGGCSEE-EECS-SHHHHHHHHHHHHHH
T ss_pred HH----Hhc-ccCCCEE-EECC-CHHHHHHHHHHHHHH
Confidence 22 111 1233444 4444 899999998888754
No 93
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.33 E-value=1.3e-11 Score=92.17 Aligned_cols=120 Identities=21% Similarity=0.284 Sum_probs=68.5
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHHHhC--CceechhHHHHHHHhc----CChhhHHHHHHhhcCCCCCHHHHHHHHHH
Q 029287 6 GKGPFICFVLGGPGSGKGTQCAKIVKNYG--LTHLSAGELLRREIAS----NSEYGTTILNTIKEGKIVPSEVTVSLIQK 79 (196)
Q Consensus 6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~--~~~i~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~ 79 (196)
...|++|+|.|+|||||||+++.|++.++ ..+++.+.+ +..... ..+.+....+.... .........+..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~-r~~~~~~~~i~~~~g~~~~~~~~~---~~~~~~~~~~~~ 104 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF-RSQHPHYLELQQEYGKDSVEYTKD---FAGKMVESLVTK 104 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG-GTTSTTHHHHHTTCSSTTHHHHHH---HHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH-HHhchhHHHHHHHcCchHHHHhhH---HHHHHHHHHHHH
Confidence 34568999999999999999999999986 456666544 221100 00000000000000 001111222333
Q ss_pred HHhcCCCCcEEEeCCCCCHHHHHHHHHHh---CCCCcEEEEeecChHHHHHHHhhc
Q 029287 80 EMESSDSKKFLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVNRVLNR 132 (196)
Q Consensus 80 ~l~~~~~~~~iid~~~~~~~~~~~~~~~~---~~~p~~~i~ld~~~~~~~~Rl~~r 132 (196)
.+. .+..+|+|+.+....++..+...+ +..+ .++++++|++++.+|+..|
T Consensus 105 ~~~--~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v-~lv~l~~~~e~~~~R~~~R 157 (253)
T 2p5t_B 105 LSS--LGYNLLIEGTLRTVDVPKKTAQLLKNKGYEV-QLALIATKPELSYLSTLIR 157 (253)
T ss_dssp HHH--TTCCEEEECCTTSSHHHHHHHHHHHHTTCEE-EEEEECCCHHHHHHHHHHH
T ss_pred HHh--cCCCEEEeCCCCCHHHHHHHHHHHHHCCCcE-EEEEEeCCHHHHHHHHHHH
Confidence 333 245789999887755544443332 2222 3468899999999999887
No 94
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.33 E-value=4.9e-12 Score=91.73 Aligned_cols=36 Identities=28% Similarity=0.511 Sum_probs=31.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhC--CceechhHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYG--LTHLSAGEL 43 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~--~~~i~~~~~ 43 (196)
.+.+++|+|++||||||+++.|+..++ +.+++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~ 42 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHY 42 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcc
Confidence 457999999999999999999999888 777776554
No 95
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.32 E-value=3.5e-11 Score=98.81 Aligned_cols=162 Identities=15% Similarity=0.166 Sum_probs=87.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCC-----ceechhHHHHHHHhcCChhhHHHH-HHhhcCCCCCHHHHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGL-----THLSAGELLRREIASNSEYGTTIL-NTIKEGKIVPSEVTVSLIQKEM 81 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~i~~~l 81 (196)
.+++|+++|++||||||+++.|++.++. .+++.+ .+++.+.........-+ ..+ ..+...+...+
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D-~ir~~l~~~~~f~~~er~~~l--------~~i~~~~~~~l 441 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGD-VVRTHLSRGLGFSKEDRITNI--------LRVGFVASEIV 441 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHH-HHHHHTCTTCCSSHHHHHHHH--------HHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECch-HhhhhhcccccccHHHHHHHH--------HHHHHHHHHHH
Confidence 4588999999999999999999998863 566654 44544322111110000 000 01112222333
Q ss_pred hcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCc-EEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHH
Q 029287 82 ESSDSKKFLIDGFPRSEENRAAFERIMGAEPD-IVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVIN 160 (196)
Q Consensus 82 ~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~-~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (196)
. .+..+|++........+..+...+. .++ ++|||++|++++.+|+.++. ...+....++ .+......
T Consensus 442 ~--~G~~VI~d~~~~~~~~r~~~~~~l~-~~d~~vV~L~~~~e~~~~Rl~r~~--~~~~~~~~i~----~~~~vr~~--- 509 (546)
T 2gks_A 442 K--HNGVVICALVSPYRSARNQVRNMME-EGKFIEVFVDAPVEVCEERDVKGL--YKKAKEGLIK----GFTGVDDP--- 509 (546)
T ss_dssp H--TTCEEEEECCCCCHHHHHHHHTTSC-TTCEEEEEEECCGGGHHHHCCSSH--HHHC----------CCBTTTBC---
T ss_pred h--CCCEEEEEcCCCCHHHHHHHHHHhh-cCCEEEEEEeCCHHHHHHHhhccc--cccccHHHHH----HHHhhhhc---
Confidence 3 3467888865444443333333232 367 78999999999999986320 0000001111 11000000
Q ss_pred HHHhcCcEEEEeCC-CCHhHHHHHHHHHHHh
Q 029287 161 YYARRGKLYTINAV-GTVDEIFEQVRAVFAA 190 (196)
Q Consensus 161 ~~~~~~~~~~I~~~-~~~~~v~~~i~~~i~~ 190 (196)
++......++||++ .+++++.++|.+.+..
T Consensus 510 ~e~~~~adivIDts~~s~eev~~~I~~~L~~ 540 (546)
T 2gks_A 510 YEPPVAPEVRVDTTKLTPEESALKILEFLKK 540 (546)
T ss_dssp CCCCSSCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred cccccCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 00001234678885 7999999999887754
No 96
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.30 E-value=4.8e-12 Score=91.31 Aligned_cols=163 Identities=13% Similarity=0.196 Sum_probs=64.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHh-CCceechhHHHHHH-------HhcCChhhHHHHHHhhcCCCCC-----HH---H
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNY-GLTHLSAGELLRRE-------IASNSEYGTTILNTIKEGKIVP-----SE---V 72 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~-~~~~i~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~-----~~---~ 72 (196)
+.+|+|+|++||||||+++.|+..+ ....+..+...+.. ..........+......+..+. .. .
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 85 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYYGT 85 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeecCC
Confidence 4689999999999999999999876 21111111111100 0000011112222222222111 00 0
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEee--cChHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 029287 73 TVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFD--CPEEEMVNRVLNRNEGRVDDNIDTVRKRLQV 150 (196)
Q Consensus 73 ~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld--~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~ 150 (196)
....+...+.. +..+|+|..+....+ +... .|+.++++. ++++++.+|+.+|. ..+.+.+.+++..
T Consensus 86 ~~~~i~~~l~~--g~~vv~d~~~~~~~~---~~~~---~~~~~~i~~~~~~~~~~~~Rl~~R~----~~~~~~~~~rl~~ 153 (207)
T 2j41_A 86 PVQYVKDTMDE--GHDVFLEIEVEGAKQ---VRKK---FPDALFIFLAPPSLEHLRERLVGRG----TESDEKIQSRINE 153 (207)
T ss_dssp EHHHHHHHHHT--TCEEEEECCGGGHHH---HHHH---CTTSEEEEEECCC-----------------------------
T ss_pred CHHHHHHHHHc--CCeEEEEECHHHHHH---HHHh---cCCeEEEEEECCCHHHHHHHHHhcC----CCCHHHHHHHHHH
Confidence 11234444443 467788875543322 2222 245333333 45779999998872 2234445555544
Q ss_pred HHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHh
Q 029287 151 FKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAA 190 (196)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~ 190 (196)
+..... + .....++ |+++ +++++.++|.+.+..
T Consensus 154 ~~~~~~----~-~~~~d~v-I~n~-~~e~~~~~i~~~l~~ 186 (207)
T 2j41_A 154 ARKEVE----M-MNLYDYV-VVND-EVELAKNRIQCIVEA 186 (207)
T ss_dssp --CGGG----G-GGGCSEE-EECS-SHHHHHHHHHHHHHH
T ss_pred HHHHHh----c-cccCCEE-EECC-CHHHHHHHHHHHHHH
Confidence 433211 1 1233444 5555 899999998887754
No 97
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.29 E-value=3.2e-10 Score=79.57 Aligned_cols=122 Identities=20% Similarity=0.247 Sum_probs=72.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHH----HHHHHHHHHHhcC
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSE----VTVSLIQKEMESS 84 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~i~~~l~~~ 84 (196)
.-+++|.|+|||||||+++.+.. |...++. +.++..+.+... ...... .........+..
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~--~~~~~~~-d~~~g~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~- 72 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK--PTEVISS-DFCRGLMSDDEN------------DQTVTGAAFDVLHYIVSKRLQL- 72 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC--GGGEEEH-HHHHHHHCSSTT------------CGGGHHHHHHHHHHHHHHHHHT-
T ss_pred CEEEEEECCCCCCHHHHHHHHcc--CCeEEcc-HHHHHHhcCccc------------chhhHHHHHHHHHHHHHHHHhC-
Confidence 46889999999999999998652 3444444 333333222211 000111 111112222222
Q ss_pred CCCcEEEeCCCC---CHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 029287 85 DSKKFLIDGFPR---SEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQV 150 (196)
Q Consensus 85 ~~~~~iid~~~~---~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~ 150 (196)
+...+.+.... ++.|++.+++++...|.+ ++||+|+..+..|...|.. ..-..+.+......
T Consensus 73 -g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~-lllDEPt~~Ld~~~~~R~~--~~~~~~vi~~~~~~ 137 (171)
T 4gp7_A 73 -GKLTVVDATNVQESARKPLIEMAKDYHCFPVA-VVFNLPEKVCQERNKNRTD--RQVEEYVIRKHTQQ 137 (171)
T ss_dssp -TCCEEEESCCCSHHHHHHHHHHHHHTTCEEEE-EEECCCHHHHHHHHHTCSS--CCCCHHHHHHHHHH
T ss_pred -CCeEEEECCCCCHHHHHHHHHHHHHcCCcEEE-EEEeCCHHHHHHHHhcccC--CCCCHHHHHHHHHH
Confidence 33445665433 367899999999989998 8899999999999887731 12345555443333
No 98
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.28 E-value=5.5e-12 Score=98.14 Aligned_cols=166 Identities=18% Similarity=0.258 Sum_probs=93.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH----------------HhcCCh-----hhHHHHHHhhcCCC-
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE----------------IASNSE-----YGTTILNTIKEGKI- 67 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~----------------~~~~~~-----~~~~~~~~l~~~~~- 67 (196)
-+++|.||+||||||++++|+ |+...+.|.+.... +....+ ...+..+++..+..
T Consensus 31 e~~~llGpsGsGKSTLLr~ia---Gl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~ 107 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLA---GFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGN 107 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHH---TSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTT
T ss_pred CEEEEECCCCchHHHHHHHHh---cCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHH
Confidence 478999999999999999999 87766655542111 111111 11234555554322
Q ss_pred --CCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHH
Q 029287 68 --VPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNID 142 (196)
Q Consensus 68 --~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~ 142 (196)
.........+.+.++..+-.. --...++.+++|++++++++...|++ ++||+|+..+.......- .....
T Consensus 108 ~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~l-LLLDEPts~LD~~~r~~l----~~~l~ 182 (359)
T 3fvq_A 108 GKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPEL-ILLDEPFSALDEQLRRQI----REDMI 182 (359)
T ss_dssp SSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE-EEEESTTTTSCHHHHHHH----HHHHH
T ss_pred cCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE-EEEeCCcccCCHHHHHHH----HHHHH
Confidence 222222233333333222111 12344666799999999999999999 889999933322222110 00000
Q ss_pred HHHHH---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287 143 TVRKR---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ 183 (196)
Q Consensus 143 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~ 183 (196)
.+.+. ...|.+|+...+..++++..++. |...+++++++..
T Consensus 183 ~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 183 AALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 00000 12577788877777777544442 4456788888754
No 99
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.27 E-value=1.6e-12 Score=101.25 Aligned_cols=165 Identities=16% Similarity=0.246 Sum_probs=88.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------------HHHHhcCCh-----hhHHHHHHhhcC--
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------------RREIASNSE-----YGTTILNTIKEG-- 65 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------------~~~~~~~~~-----~~~~~~~~l~~~-- 65 (196)
-+++|.||+||||||++++|+ |+...+.|.+. ++.+...++ ...++.+++..+
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~---GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~ 131 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVN---LLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLE 131 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHH---TSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCchHHHHHHHHh---cCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHH
Confidence 478999999999999999999 77655544432 111111111 011222222211
Q ss_pred -CCCCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcH
Q 029287 66 -KIVPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNI 141 (196)
Q Consensus 66 -~~~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~ 141 (196)
...+.......+.+.+...+-.. .-...++.++.|++++++++...|++ +++|+|+.-+....... ..+-.
T Consensus 132 ~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~l-LLlDEPTs~LD~~~~~~----i~~lL 206 (366)
T 3tui_C 132 LDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKV-LLCDQATSALDPATTRS----ILELL 206 (366)
T ss_dssp HSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSE-EEEESTTTTSCHHHHHH----HHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCE-EEEECCCccCCHHHHHH----HHHHH
Confidence 11222222333333333222111 11334556799999999999999999 88999993222111111 00000
Q ss_pred HHHHHH---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHH
Q 029287 142 DTVRKR---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFE 182 (196)
Q Consensus 142 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~ 182 (196)
..+.+. ...+.+|+...+..+|++..++. |...+++++++.
T Consensus 207 ~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~ 253 (366)
T 3tui_C 207 KDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 253 (366)
T ss_dssp HHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHS
T ss_pred HHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 111110 12466777777878887654443 556778888764
No 100
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.27 E-value=2.1e-12 Score=101.20 Aligned_cols=166 Identities=18% Similarity=0.251 Sum_probs=93.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH------------HhcCCh-----hhHHHHHHhhcC---CCCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE------------IASNSE-----YGTTILNTIKEG---KIVP 69 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~------------~~~~~~-----~~~~~~~~l~~~---~~~~ 69 (196)
-+++|.||+||||||++++|+ |+...+.|.+.... +....+ ...++.+++..+ ....
T Consensus 30 e~~~llGpsGsGKSTLLr~ia---Gl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~ 106 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIA---GLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAK 106 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHH---TSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCC
T ss_pred CEEEEEcCCCchHHHHHHHHH---cCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCC
Confidence 478999999999999999999 87766666543111 011111 011223333221 1123
Q ss_pred HHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH
Q 029287 70 SEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK 146 (196)
Q Consensus 70 ~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~ 146 (196)
.......+.+.++..+-..+ -...++.++.|++++++++...|++ ++||+|+..+....... .......+.+
T Consensus 107 ~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~l-LLLDEPts~LD~~~~~~----l~~~l~~l~~ 181 (381)
T 3rlf_A 107 KEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV-FLLDEPLSNLDAALRVQ----MRIEISRLHK 181 (381)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSE-EEEESTTTTSCHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCE-EEEECCCcCCCHHHHHH----HHHHHHHHHH
Confidence 33333344444443222221 1334556799999999999999998 88999994333222221 0001111111
Q ss_pred H---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287 147 R---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ 183 (196)
Q Consensus 147 ~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~ 183 (196)
+ ...|.+|+...+..++++..++. |...++++++++.
T Consensus 182 ~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~ 224 (381)
T 3rlf_A 182 RLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (381)
T ss_dssp HHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred hCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC
Confidence 1 12577888888888877544443 4456788888654
No 101
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=99.26 E-value=1.8e-11 Score=86.93 Aligned_cols=163 Identities=17% Similarity=0.223 Sum_probs=87.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC-CceechhHHHHHHHhcCCh--------hhHHHHHHhhcCCCCCHH--------HH
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYG-LTHLSAGELLRREIASNSE--------YGTTILNTIKEGKIVPSE--------VT 73 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~-~~~i~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~--------~~ 73 (196)
.|+|.|||||||||+++.|.+.+. ...++.....| ...++.. ....+.+.+..+..+... ..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR-~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~ 81 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTR-TPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST 81 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECS-CCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEecc-CCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeee
Confidence 478899999999999999998863 22222211211 1112111 233456666666554321 11
Q ss_pred HHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHh
Q 029287 74 VSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKA 153 (196)
Q Consensus 74 ~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~ 153 (196)
...+...+.. +..+|++.-+.+..+ +.......+-.++++-.+.+.+.+|+.+| ..++.+.++.|+.....
T Consensus 82 ~~~v~~~l~~--g~~vil~id~~g~~~---~k~~~~~~~~~Ifi~pps~e~L~~RL~~R----g~e~~e~i~~Rl~~a~~ 152 (186)
T 1ex7_A 82 VASVKQVSKS--GKTCILDIDMQGVKS---VKAIPELNARFLFIAPPSVEDLKKRLEGR----GTETEESINKRLSAAQA 152 (186)
T ss_dssp HHHHHHHHHH--TSEEEEECCHHHHHH---HHTCGGGCCEEEEEECSCHHHHHHHHHHH----CCSCHHHHHHHHHHHHH
T ss_pred cceeeehhhC--CCEEEecCCHHHHHH---HHHhcccCceEEEEeCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHH
Confidence 3445555554 556777754322211 11111123444333344558999999998 34577888887765443
Q ss_pred chHhHHHHHHh-cCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287 154 LNLPVINYYAR-RGKLYTINAVGTVDEIFEQVRAVFA 189 (196)
Q Consensus 154 ~~~~~~~~~~~-~~~~~~I~~~~~~~~v~~~i~~~i~ 189 (196)
. +.+... ....+++| .++++..+++.++|.
T Consensus 153 e----~~~~~~~~fD~vIvN--ddle~a~~~l~~iI~ 183 (186)
T 1ex7_A 153 E----LAYAETGAHDKVIVN--DDLDKAYKELKDFIF 183 (186)
T ss_dssp H----HHHHTTTCSSEEEEC--SSHHHHHHHHHHHHT
T ss_pred H----HhhccccCCcEEEEC--cCHHHHHHHHHHHHH
Confidence 2 111111 12333333 378888888887763
No 102
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=99.26 E-value=4.5e-11 Score=98.67 Aligned_cols=164 Identities=13% Similarity=0.101 Sum_probs=83.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhC----C--ceechhHHHHHHHhcCChhhHHH-HHHhhcCCCCCHHHHHHHHHH
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYG----L--THLSAGELLRREIASNSEYGTTI-LNTIKEGKIVPSEVTVSLIQK 79 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~----~--~~i~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~i~~ 79 (196)
..+++|.|+|++||||||+++.|++.++ . ..++. +.+++.+.........- .+.+ ..+...+..
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~-D~ir~~l~~~~~f~~~er~~~i--------~ri~~v~~~ 464 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG-DTVRHELSSELGFTREDRHTNI--------QRIAFVATE 464 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH-HHHHHHTCTTCCCSHHHHHHHH--------HHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc-HHHHHHhccccCCChhHHHHHH--------HHHHHHHHH
Confidence 4568999999999999999999999976 2 34554 44454322111100000 0000 001122222
Q ss_pred HHhcCCCCcEEEeCCCCCHHHHHHHHHHhCC-CCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhH
Q 029287 80 EMESSDSKKFLIDGFPRSEENRAAFERIMGA-EPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPV 158 (196)
Q Consensus 80 ~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~-~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (196)
.+. .+..+|++.+......+..+...+.. .+.++||||+|++++.+|..+.. .. ..+......+....
T Consensus 465 ~~~--~g~~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~r~l-------~~--~~~~~~i~~~~~~r 533 (573)
T 1m8p_A 465 LTR--AGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRGI-------YA--AARRGEIKGFTGVD 533 (573)
T ss_dssp HHH--TTCEEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSCH-------HH--HHHTTSSSSCBTTT
T ss_pred HHh--CCCEEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhcccc-------hh--hhhHHHHHHHHhcc
Confidence 222 24556676444333333333332221 24588999999999999963320 00 00000000000000
Q ss_pred HHHHHhcCcEEEEeCCC-CHhHHHHHHHHHHHh
Q 029287 159 INYYARRGKLYTINAVG-TVDEIFEQVRAVFAA 190 (196)
Q Consensus 159 ~~~~~~~~~~~~I~~~~-~~~~v~~~i~~~i~~ 190 (196)
..++.....-++||++. +++++.++|.+.+..
T Consensus 534 ~~~~~p~~~dl~IDts~~s~eevv~~Il~~l~~ 566 (573)
T 1m8p_A 534 DPYETPEKADLVVDFSKQSVRSIVHEIILVLES 566 (573)
T ss_dssp BCCCCCSSCSEEECTTTSCHHHHHHHHHHHHHH
T ss_pred ccccccCCCCEEEECCCCCHHHHHHHHHHHHHh
Confidence 00111112346788764 999999998887754
No 103
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.25 E-value=9.2e-12 Score=97.49 Aligned_cols=166 Identities=17% Similarity=0.246 Sum_probs=92.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH------------HHhcCChh-----hHHHHHHhhcCCC---CC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR------------EIASNSEY-----GTTILNTIKEGKI---VP 69 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~------------~~~~~~~~-----~~~~~~~l~~~~~---~~ 69 (196)
-+++|.||+||||||++++|+ |+...+.|.+... .+....+. ..+..+++..+.. ..
T Consensus 38 e~~~llGpnGsGKSTLLr~ia---Gl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~ 114 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIA---GLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFP 114 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHH---TSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCC
T ss_pred CEEEEECCCCChHHHHHHHHH---cCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCC
Confidence 478999999999999999999 8766555544211 11111111 1124555554422 22
Q ss_pred HHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH
Q 029287 70 SEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK 146 (196)
Q Consensus 70 ~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~ 146 (196)
.......+.+.++..+-..+ -...++.++.|++++++++...|++ ++||+|+..+....... .......+.+
T Consensus 115 ~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l-LLLDEP~s~LD~~~r~~----l~~~l~~l~~ 189 (372)
T 1v43_A 115 KDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDV-LLMDEPLSNLDAKLRVA----MRAEIKKLQQ 189 (372)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSE-EEEESTTTTSCHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCCccCCHHHHHH----HHHHHHHHHH
Confidence 33223334444443222111 1345777899999999999999999 88999994333332222 0000111111
Q ss_pred H---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287 147 R---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ 183 (196)
Q Consensus 147 ~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~ 183 (196)
. ...|.+|+...+..++++..++. |...++++++++.
T Consensus 190 ~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 232 (372)
T 1v43_A 190 KLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232 (372)
T ss_dssp HHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred hCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 1 12456677777777776433332 3345678888654
No 104
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=99.25 E-value=1.3e-10 Score=90.59 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=33.7
Q ss_pred CCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHh
Q 029287 110 AEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLP 157 (196)
Q Consensus 110 ~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (196)
.+|++++++|+|++++.+|+.+|.+.....+.+.+++..+.|......
T Consensus 198 ~ppdlt~Lldl~pe~~l~RI~~RgR~~Eri~leyl~rVr~~Y~~la~t 245 (376)
T 1of1_A 198 LPGTNIVLGALPEDRHIDRLAKRQRPGERLDLAMLAAIRRVYGLLANT 245 (376)
T ss_dssp CTTCEEEEEECCHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEecCCHHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 346888889999999999998873211112567777777778776443
No 105
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=99.23 E-value=1.2e-10 Score=89.69 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=33.5
Q ss_pred CCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchH
Q 029287 110 AEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNL 156 (196)
Q Consensus 110 ~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~ 156 (196)
.+||+++++|+|++++.+|+.+|.+.....+.+.+++..+.|.....
T Consensus 153 ~ppdlt~lldl~pe~~l~RI~~Rgr~~Eri~~~yl~rvr~~Y~~l~~ 199 (331)
T 1e2k_A 153 LPGTNIVLGALPEDRHIDRLAKRQRPGERLDLAMLAAIRRVYGLLAN 199 (331)
T ss_dssp CTTCEEEEEECCHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHH
Confidence 35689899999999999999887321111256777777777877644
No 106
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.21 E-value=3.4e-12 Score=99.48 Aligned_cols=166 Identities=17% Similarity=0.241 Sum_probs=90.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH------------HHhcCCh-----hhHHHHHHhhcCCCC---C
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR------------EIASNSE-----YGTTILNTIKEGKIV---P 69 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~------------~~~~~~~-----~~~~~~~~l~~~~~~---~ 69 (196)
-+++|.||+||||||++++|+ |+...+.|.+... .+....+ ...+..+++..+... +
T Consensus 30 e~~~llGpnGsGKSTLLr~ia---Gl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~ 106 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLA---GIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRIS 106 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHH---TSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSH
T ss_pred CEEEEEcCCCchHHHHHHHHH---CCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCC
Confidence 478999999999999999999 8776655544211 1111111 112344554433211 1
Q ss_pred HHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH
Q 029287 70 SEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK 146 (196)
Q Consensus 70 ~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~ 146 (196)
.......+.+.++..+-..+ -...++.++.|++++++++...|++ ++||+|+..+....... ..+....+.+
T Consensus 107 ~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~l-LLLDEP~s~LD~~~r~~----l~~~l~~l~~ 181 (359)
T 2yyz_A 107 KDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKV-LLFDEPLSNLDANLRMI----MRAEIKHLQQ 181 (359)
T ss_dssp HHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE-EEEESTTTTSCHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE-EEEECCcccCCHHHHHH----HHHHHHHHHH
Confidence 11112223333332222111 1334666799999999999999998 88999994333322221 0000111111
Q ss_pred H---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287 147 R---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ 183 (196)
Q Consensus 147 ~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~ 183 (196)
. ...|.+|+...+..++++..++. |...++++++++.
T Consensus 182 ~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~ 224 (359)
T 2yyz_A 182 ELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDS 224 (359)
T ss_dssp HHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred hcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 1 12456677777777776433332 3345678888754
No 107
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.20 E-value=1.6e-11 Score=95.74 Aligned_cols=166 Identities=20% Similarity=0.253 Sum_probs=89.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH------------HHhcCCh-----hhHHHHHHhhcC---CCCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR------------EIASNSE-----YGTTILNTIKEG---KIVP 69 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~------------~~~~~~~-----~~~~~~~~l~~~---~~~~ 69 (196)
-+++|.||+||||||++++|+ |+...+.|.+... .+....+ ...+..+++..+ ....
T Consensus 30 e~~~llGpnGsGKSTLLr~ia---Gl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~ 106 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIA---GIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAP 106 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHH---TSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCC
T ss_pred CEEEEECCCCchHHHHHHHHh---cCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCC
Confidence 478999999999999999999 8766555544211 1111111 011223333221 1112
Q ss_pred HHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH
Q 029287 70 SEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK 146 (196)
Q Consensus 70 ~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~ 146 (196)
.....+.+.+.++..+-..+ -...++.++.|++++++++...|++ ++||+|+..+....... .......+.+
T Consensus 107 ~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l-LLLDEP~s~LD~~~r~~----l~~~l~~l~~ 181 (362)
T 2it1_A 107 REEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEV-LLLDEPLSNLDALLRLE----VRAELKRLQK 181 (362)
T ss_dssp HHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSE-EEEESGGGGSCHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCE-EEEECccccCCHHHHHH----HHHHHHHHHH
Confidence 22222333444443222221 1334666799999999999999999 88999994443333222 0000111111
Q ss_pred H---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287 147 R---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ 183 (196)
Q Consensus 147 ~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~ 183 (196)
+ ...|.+|+...+..++++..++. |...++++++++.
T Consensus 182 ~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~ 224 (362)
T 2it1_A 182 ELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYK 224 (362)
T ss_dssp HHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred hCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 1 12456677777777776433332 3345678887654
No 108
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=99.20 E-value=2.9e-11 Score=87.61 Aligned_cols=164 Identities=16% Similarity=0.279 Sum_probs=79.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCC-ceechhHHHHHH-------HhcCChhhHHHHHHhhcCCCCCHH--------H
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGL-THLSAGELLRRE-------IASNSEYGTTILNTIKEGKIVPSE--------V 72 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~-~~i~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~--------~ 72 (196)
+.+|+|.||+||||||+++.|++.++- .........+.. ..........+.+.+..+...... .
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~yg~ 87 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYYGT 87 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccCCC
Confidence 468899999999999999999988742 111111000000 000000112233332222221100 0
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecC-hHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 029287 73 TVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCP-EEEMVNRVLNRNEGRVDDNIDTVRKRLQVF 151 (196)
Q Consensus 73 ~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~-~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~ 151 (196)
....+.+.+.. +..+++|..+.+.. .+.. ..+.+ .+||+..| ++++.+|+.+|. .++.+.+++|+...
T Consensus 88 ~~~~i~~~l~~--g~~vild~~~~g~~---~~~~-~~~~~-~~i~i~~ps~~~l~~Rl~~R~----~~~~e~i~~Rl~~~ 156 (208)
T 3tau_A 88 PLEYVEEKLAA--GVDIFLEIEVQGAM---QVRK-AMPEG-IFIFLTPPDLSELKNRIIGRG----TESMEVVEERMETA 156 (208)
T ss_dssp EHHHHHHHHHT--TCCEEEECCHHHHH---HHHH-HCTTS-EEEEEECTTTTTSSCC-----------CCHHHHHHHHHH
T ss_pred cHHHHHHHHHc--CCeEEEEeeHHHHH---HHHH-hCCCe-EEEEEeCCCHHHHHHHHHhcC----CCCHHHHHHHHHHH
Confidence 01233444443 55677876432221 2222 22233 44666655 789999998882 23456677766554
Q ss_pred HhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHh
Q 029287 152 KALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAA 190 (196)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~ 190 (196)
... ..+ .....++++| + +.+++.+++...+..
T Consensus 157 ~~e----~~~-~~~~d~vivN-~-~~~~~~~~l~~~i~~ 188 (208)
T 3tau_A 157 KKE----IEM-MASYDYAVVN-D-VVANAVQKIKGIVET 188 (208)
T ss_dssp HHH----HHH-GGGSSEEEEC-S-SHHHHHHHHHHHHHH
T ss_pred HHH----HHh-hccCCEEEEC-c-CHHHHHHHHHHHHHH
Confidence 332 112 2233444444 3 689999888877754
No 109
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.20 E-value=1.9e-11 Score=95.13 Aligned_cols=166 Identities=20% Similarity=0.310 Sum_probs=87.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH------------HhcCChh-----hHHHHHHhhcC---CCCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE------------IASNSEY-----GTTILNTIKEG---KIVP 69 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~------------~~~~~~~-----~~~~~~~l~~~---~~~~ 69 (196)
-+++|.||+||||||++++|+ |+...+.|.+.... +....+. ..+..+++..+ ...+
T Consensus 42 e~~~llGpnGsGKSTLLr~ia---Gl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~ 118 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIA---GLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVP 118 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHH---TSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCC
T ss_pred CEEEEECCCCCcHHHHHHHHh---CCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCC
Confidence 478999999999999999999 87665555442111 1111110 11122332211 1122
Q ss_pred HHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH
Q 029287 70 SEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK 146 (196)
Q Consensus 70 ~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~ 146 (196)
.......+.+.++..+-..+ -...++.++.|++++++++...|++ ++||+|+..+....... ...-...+.+
T Consensus 119 ~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~l-LLLDEP~s~LD~~~r~~----l~~~l~~l~~ 193 (355)
T 1z47_A 119 KDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQV-LLFDEPFAAIDTQIRRE----LRTFVRQVHD 193 (355)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE-EEEESTTCCSSHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE-EEEeCCcccCCHHHHHH----HHHHHHHHHH
Confidence 22222333444443222211 1334666799999999999999998 88999993332222211 0000111111
Q ss_pred H---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287 147 R---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ 183 (196)
Q Consensus 147 ~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~ 183 (196)
+ ...|.+|+...+..++++..++. |...++++++++.
T Consensus 194 ~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 236 (355)
T 1z47_A 194 EMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236 (355)
T ss_dssp HHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred hcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 1 12456677777777776433332 3345678887653
No 110
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=99.19 E-value=2.8e-10 Score=93.02 Aligned_cols=146 Identities=14% Similarity=0.216 Sum_probs=80.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCce-----echhHHHHHHHhcCChhhHHHHHHhhcCCCC----CHHHH---HH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTH-----LSAGELLRREIASNSEYGTTILNTIKEGKIV----PSEVT---VS 75 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~-----i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~---~~ 75 (196)
.+.+|++.|+|||||||+++.|++.+++.+ ++.|++.+.. ....... +........ ..... ..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~-~~~~~~~----~~f~~~~~~~~~~re~~~~~~l~ 108 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREA-VKQYSSY----NFFRPDNEEAMKVRKQCALAALR 108 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH-HSCCCCG----GGGCTTCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHh-ccCCccc----cccCcccHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999985433 5667755443 3221100 000000000 00011 12
Q ss_pred HHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhC--CCCcEEEEeecC-hHHHHHHHhhccCCCCC----Cc---HHHHH
Q 029287 76 LIQKEMESSDSKKFLIDGFPRSEENRAAFERIMG--AEPDIVLFFDCP-EEEMVNRVLNRNEGRVD----DN---IDTVR 145 (196)
Q Consensus 76 ~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~--~~p~~~i~ld~~-~~~~~~Rl~~r~~~~~~----~~---~~~~~ 145 (196)
.+...+....+..+|+|+...+...+..+..... ...-++|++.|| ++.+.+|+.+|...+.. +. .+.+.
T Consensus 109 ~~~~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~~rPdl~~~d~e~~~~~~~ 188 (520)
T 2axn_A 109 DVKSYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISSPDYKDCNSAEAMDDFM 188 (520)
T ss_dssp HHHHHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTTTSGGGTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhhcCCccccCCHHHHHHHHH
Confidence 2223332234677899998888766655543321 122344666777 67777888666433221 22 23456
Q ss_pred HHHHHHHhchHhH
Q 029287 146 KRLQVFKALNLPV 158 (196)
Q Consensus 146 ~~~~~~~~~~~~~ 158 (196)
+|+..|.....++
T Consensus 189 ~Ri~~y~~~Yepi 201 (520)
T 2axn_A 189 KRISCYEASYQPL 201 (520)
T ss_dssp HHHHHHHTTCCCC
T ss_pred HHHHhhhhhhccc
Confidence 6777777765443
No 111
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=99.19 E-value=1e-09 Score=78.44 Aligned_cols=161 Identities=14% Similarity=0.155 Sum_probs=89.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhC---CceechhHHHHHHHhc--CChhhHH---------HHHHhh-cCCCCCHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYG---LTHLSAGELLRREIAS--NSEYGTT---------ILNTIK-EGKIVPSEV 72 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~---~~~i~~~~~~~~~~~~--~~~~~~~---------~~~~l~-~~~~~~~~~ 72 (196)
.+++|+|+|.+||||+|+++.|.+.+| +..+..++.+++.... +.+.... .+..+. .+ ..
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g-----~~ 84 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWG-----EE 84 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHH-----HH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHH-----HH
Confidence 458999999999999999999998885 6678888988753221 1111000 000000 00 00
Q ss_pred HHHH-----HHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHH
Q 029287 73 TVSL-----IQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKR 147 (196)
Q Consensus 73 ~~~~-----i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~ 147 (196)
.... +...+.......||+++. ........|...+. ..-.+|.+.+|++++.+|...+. ...++.+.
T Consensus 85 ~R~~d~~~~~~~~~~~~~~~~vII~dv-R~~~Ev~~fr~~~g-~~~~iirI~as~~~R~~Rg~~~~--~~~Dd~es---- 156 (202)
T 3ch4_B 85 KRQADPGFFCRKIVEGISQPIWLVSDT-RRVSDIQWFREAYG-AVTQTVRVVALEQSRQQRGWVFT--PGVDDAES---- 156 (202)
T ss_dssp HHHHCTTTTHHHHSBTCCCSEEEECCC-CSHHHHHHHHHHHG-GGEEEEEEEECHHHHHHTTCCCC--TTTTTSHH----
T ss_pred HHhcCchHHHHHHHHhcCCCcEEEeCC-CCHHHHHHHHHhCC-CcEEEEEEECCHHHHHHHhhhcc--cccccccc----
Confidence 0000 111122223456888877 44455556665554 22345899999999999953331 11112111
Q ss_pred HHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287 148 LQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAAL 191 (196)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~ 191 (196)
+ .. +..+ .... ++|+++++.+++.+++...+..+
T Consensus 157 -E----~g---L~~~-~~~D-~vI~Ndgt~eel~~~v~~ll~~~ 190 (202)
T 3ch4_B 157 -E----CG---LDNF-GDFD-WVIENHGVEQRLEEQLENLIEFI 190 (202)
T ss_dssp -H----HT---TTTC-CCCS-EEEEECSCHHHHHHHHHHHHHHH
T ss_pred -c----cC---CCCC-CcCC-EEEEeCCCHHHHHHHHHHHHHHH
Confidence 0 00 0001 1122 45777789999988887776554
No 112
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.19 E-value=3e-11 Score=86.03 Aligned_cols=162 Identities=20% Similarity=0.261 Sum_probs=61.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhC----Cce------echhHHHHHHHhcCChhhHHHHHHhhcCCCCCH--------H
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYG----LTH------LSAGELLRREIASNSEYGTTILNTIKEGKIVPS--------E 71 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~----~~~------i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~ 71 (196)
.+++|.||+||||||++++|...+. ... ...+++ ............+......+..... .
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~yg 79 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYG 79 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHHhhcceeeEEEEeceecc
Confidence 4789999999999999999997653 110 011110 0000000111222222222221110 0
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh-HHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 029287 72 VTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE-EEMVNRVLNRNEGRVDDNIDTVRKRLQV 150 (196)
Q Consensus 72 ~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~-~~~~~Rl~~r~~~~~~~~~~~~~~~~~~ 150 (196)
.....+.+.+.. +..++++.-+.+.. .+.......+ .+||++.|. +.+.+|+.+|. .++.+.+++|+..
T Consensus 80 ~~~~~i~~~l~~--g~~~il~~~~~g~~---~l~~~~~~~~-~~i~i~~p~~~~l~~Rl~~Rg----~~~~~~i~~rl~~ 149 (186)
T 3a00_A 80 STVASVKQVSKS--GKTCILDIDMQGVK---SVKAIPELNA-RFLFIAPPSVEDLKKRLEGRG----TETEESINKRLSA 149 (186)
T ss_dssp EEHHHHHHHHHT--TCEEEEECCHHHHH---HHHTCGGGCC-EEEEEECSCC----------------------------
T ss_pred CcHHHHHHHHHc--CCeEEEEEcHHHHH---HHHHhcCCCe-EEEEEECcCHHHHHHHHHhcC----CCCHHHHHHHHHH
Confidence 001234444443 45666764321111 1111012233 458888866 99999999882 2344555555544
Q ss_pred HHhchHhHHHHH-HhcCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287 151 FKALNLPVINYY-ARRGKLYTINAVGTVDEIFEQVRAVFA 189 (196)
Q Consensus 151 ~~~~~~~~~~~~-~~~~~~~~I~~~~~~~~v~~~i~~~i~ 189 (196)
.... ..+. .....++ |.++ +.++..+++.+++.
T Consensus 150 ~~~~----~~~~~~~~~d~v-i~nd-~~~~a~~~l~~~i~ 183 (186)
T 3a00_A 150 AQAE----LAYAETGAHDKV-IVND-DLDKAYKELKDFIF 183 (186)
T ss_dssp -------------CCCCSEE-EECS-SHHHHHHHHHHHHT
T ss_pred HHHH----HHhhcccCCcEE-EECc-CHHHHHHHHHHHHH
Confidence 4332 1111 1223444 4444 78888888877764
No 113
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=99.19 E-value=2.1e-11 Score=92.67 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=30.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhC-----CceechhHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYG-----LTHLSAGELLR 45 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~-----~~~i~~~~~~~ 45 (196)
++++|+|+|++||||||+++.|++.+| +.+++.|++++
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 467999999999999999999999887 67888877663
No 114
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.18 E-value=1.6e-11 Score=92.22 Aligned_cols=161 Identities=19% Similarity=0.290 Sum_probs=86.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh-----hhHHHHHHhhcCCC---
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE-----YGTTILNTIKEGKI--- 67 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~-----~~~~~~~~l~~~~~--- 67 (196)
-+++|.||+||||||+++.|+ |+...+.|.+. ++......+ ...++.+++..+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~---Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 114 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLT---GYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYG 114 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHT---SSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHh---cCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcC
Confidence 478999999999999999999 76655544331 111111111 11223444432211
Q ss_pred -CCHHHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCC------CCcEEEEeecChHH----HHHHHhhccCCC
Q 029287 68 -VPSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGA------EPDIVLFFDCPEEE----MVNRVLNRNEGR 136 (196)
Q Consensus 68 -~~~~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~------~p~~~i~ld~~~~~----~~~Rl~~r~~~~ 136 (196)
.........+.+.+........-...++.++.|++.+++++.. .|++ ++||+|+.- ..+++.+-
T Consensus 115 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~l-LllDEPts~LD~~~~~~i~~~---- 189 (266)
T 4g1u_C 115 GSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRW-LFLDEPTSALDLYHQQHTLRL---- 189 (266)
T ss_dssp STTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEE-EEECCCCSSCCHHHHHHHHHH----
T ss_pred cHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCE-EEEeCccccCCHHHHHHHHHH----
Confidence 1112222333333333222112245577789999999999887 8998 889999822 11111110
Q ss_pred CCCcHHHHHHH---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHH
Q 029287 137 VDDNIDTVRKR---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFE 182 (196)
Q Consensus 137 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~ 182 (196)
...+.+. ...+.+|+...+..++++..++. +...++++++..
T Consensus 190 ----l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 190 ----LRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp ----HHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred ----HHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence 1111111 12455677777777776543332 334567777753
No 115
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=99.18 E-value=1.7e-10 Score=89.02 Aligned_cols=47 Identities=15% Similarity=0.039 Sum_probs=30.5
Q ss_pred CCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchH
Q 029287 110 AEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNL 156 (196)
Q Consensus 110 ~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~ 156 (196)
..||++||||+|+++..+|+.+|.+.......+.+++..+.|.....
T Consensus 165 ~~PDltI~Ld~~pe~~l~RI~~RgR~~Erie~~yl~rvr~~Y~~l~~ 211 (341)
T 1osn_A 165 PPGTNLVVCTVSLPSHLSRVSKRARPGETVNLPFVMVLRNVYIMLIN 211 (341)
T ss_dssp CSCCEEEEEECCHHHHHHHCC------CCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHHH
Confidence 46999999999999999999877221111235666666666776643
No 116
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.17 E-value=8.9e-12 Score=93.38 Aligned_cols=109 Identities=27% Similarity=0.385 Sum_probs=62.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH----------------HHHHhcCCh-----hhHHHHHHhhcC---
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL----------------RREIASNSE-----YGTTILNTIKEG--- 65 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~----------------~~~~~~~~~-----~~~~~~~~l~~~--- 65 (196)
-+++|.||+||||||+++.|+ |+...+.|.+. ++.+....+ ...+..+++..+
T Consensus 51 ei~~liG~NGsGKSTLlk~l~---Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~ 127 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLN---LLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMK 127 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHT---TSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCcHHHHHHHHH---cCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHH
Confidence 478999999999999999999 66544333321 222221111 111222322211
Q ss_pred -CCCCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 66 -KIVPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 66 -~~~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
...........+.+.++..+-.. --...++.++.|++.+++++...|++ ++||+|+
T Consensus 128 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~l-llLDEPt 187 (263)
T 2olj_A 128 VRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKI-MLFDEPT 187 (263)
T ss_dssp TSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE-EEEESTT
T ss_pred HcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCE-EEEeCCc
Confidence 11122222223333333222111 12345667799999999999999998 7899999
No 117
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.17 E-value=4.1e-10 Score=83.55 Aligned_cols=29 Identities=45% Similarity=0.720 Sum_probs=25.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCc
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLT 36 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~ 36 (196)
.+.+|+|+||+||||||+++.|+..+|..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 45799999999999999999999988754
No 118
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.17 E-value=1e-11 Score=91.93 Aligned_cols=109 Identities=20% Similarity=0.236 Sum_probs=66.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH------------HHhcCCh-----hhHHHHHHhhcCCCC-CHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR------------EIASNSE-----YGTTILNTIKEGKIV-PSE 71 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~------------~~~~~~~-----~~~~~~~~l~~~~~~-~~~ 71 (196)
-+++|.||+||||||++++|+ |+...+.|.+... .+...++ ...+..+++..+... ...
T Consensus 25 e~~~liG~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~ 101 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIA---GIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERV 101 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHH---TSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHH
T ss_pred EEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCc
Confidence 478999999999999999999 7765555444211 1111111 122345555443221 111
Q ss_pred HHHHHHHHHHhcCCC---CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 72 VTVSLIQKEMESSDS---KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 72 ~~~~~i~~~l~~~~~---~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
...+.+.+.++..+- ...-...++.++.|++.+++++...|++ ++||+|+
T Consensus 102 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l-llLDEPt 154 (240)
T 2onk_A 102 ERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRL-LLLDEPL 154 (240)
T ss_dssp HHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSS-BEEESTT
T ss_pred hHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE-EEEeCCc
Confidence 112334444443221 1112445777899999999999999999 7899999
No 119
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.16 E-value=6.9e-12 Score=94.03 Aligned_cols=30 Identities=30% Similarity=0.625 Sum_probs=26.6
Q ss_pred eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 92 DGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
..++.++.|++.+++++...|++ ++||+|+
T Consensus 152 ~~LSgGq~qRv~lAraL~~~p~l-llLDEPt 181 (262)
T 1b0u_A 152 VHLSGGQQQRVSIARALAMEPDV-LLFDEPT 181 (262)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSE-EEEESTT
T ss_pred ccCCHHHHHHHHHHHHHhcCCCE-EEEeCCC
Confidence 34667799999999999999999 8899999
No 120
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.16 E-value=1.8e-11 Score=95.05 Aligned_cols=165 Identities=19% Similarity=0.253 Sum_probs=84.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH------------HHHHhcCChh-----hHHHHHHhhcCC---CCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL------------RREIASNSEY-----GTTILNTIKEGK---IVP 69 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~------------~~~~~~~~~~-----~~~~~~~l~~~~---~~~ 69 (196)
-+++|.||+||||||++++|+ |+...+.|.+. ++.+....+. ..+..+++..+. ..+
T Consensus 27 e~~~llGpnGsGKSTLLr~ia---Gl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~ 103 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIA---GFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK 103 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHH---TSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCC
T ss_pred CEEEEECCCCccHHHHHHHHH---cCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCC
Confidence 478999999999999999999 87665554432 1111111110 111222222110 011
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHH--
Q 029287 70 SEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKR-- 147 (196)
Q Consensus 70 ~~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~-- 147 (196)
.......+.+.+.......--...++.++.|++++++++...|++ ++||+|+..+.......- ......+.++
T Consensus 104 ~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~l-LLLDEP~s~LD~~~~~~l----~~~l~~l~~~~g 178 (348)
T 3d31_A 104 DPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKI-LLLDEPLSALDPRTQENA----REMLSVLHKKNK 178 (348)
T ss_dssp CHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSE-EEEESSSTTSCHHHHHHH----HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE-EEEECccccCCHHHHHHH----HHHHHHHHHhcC
Confidence 111222233333332211112344666799999999999999999 889999943333222210 0001111110
Q ss_pred -HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHH
Q 029287 148 -LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFE 182 (196)
Q Consensus 148 -~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~ 182 (196)
...|.+|+...+..++++..++. |...++++++++
T Consensus 179 ~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~ 217 (348)
T 3d31_A 179 LTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217 (348)
T ss_dssp CEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred CEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 12455677666666666422221 223456777754
No 121
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.15 E-value=6.3e-11 Score=85.36 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
..+.+++|+|++||||||+++.|+..+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999999876
No 122
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.14 E-value=5.5e-11 Score=87.75 Aligned_cols=110 Identities=20% Similarity=0.224 Sum_probs=65.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH------------------HHHHhcCCh-----hhHHHHHHhhcC-
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL------------------RREIASNSE-----YGTTILNTIKEG- 65 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~------------------~~~~~~~~~-----~~~~~~~~l~~~- 65 (196)
-+++|.||+||||||++++|+ |+...+.|++. ++.+....+ ...++.+++..+
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~---Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~ 108 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIG---CLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPL 108 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHT---TSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHh---cCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHH
Confidence 478999999999999999999 76654444331 111222111 111233333211
Q ss_pred -----CCCCHHHHHHHHHHHHhcCCCCcE----EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 66 -----KIVPSEVTVSLIQKEMESSDSKKF----LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 66 -----~~~~~~~~~~~i~~~l~~~~~~~~----iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
...........+.+.+....-... -...++.++.|++.+++++...|++ ++||+|+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~l-lllDEPts 174 (235)
T 3tif_A 109 IFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPI-ILADQPTW 174 (235)
T ss_dssp HTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSE-EEEESTTT
T ss_pred HhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCE-EEEeCCcc
Confidence 122333333444444443322111 2344666799999999999999999 88999993
No 123
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.13 E-value=2.1e-11 Score=95.00 Aligned_cols=163 Identities=20% Similarity=0.230 Sum_probs=89.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH-----------------HhcCCh-----hhHHHHHHhhcCC-
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE-----------------IASNSE-----YGTTILNTIKEGK- 66 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~-----------------~~~~~~-----~~~~~~~~l~~~~- 66 (196)
-+++|.||+||||||++++|+ |+...+.|.+.... +....+ ...+..+++..+.
T Consensus 32 e~~~llGpnGsGKSTLLr~ia---Gl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~ 108 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIA---GLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLT 108 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHH---TSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGT
T ss_pred CEEEEECCCCCcHHHHHHHHh---CCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHH
Confidence 478999999999999999999 87665555432111 110001 1123444444322
Q ss_pred --CCCHHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcH
Q 029287 67 --IVPSEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNI 141 (196)
Q Consensus 67 --~~~~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~ 141 (196)
..+.......+.+.++..+-..+ -...++.++.|++++++++...|++ ++||+|+..+....... -.
T Consensus 109 ~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~l-LLLDEP~s~LD~~~r~~-------l~ 180 (353)
T 1oxx_K 109 NMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSL-LLLDEPFSNLDARMRDS-------AR 180 (353)
T ss_dssp TSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE-EEEESTTTTSCGGGHHH-------HH
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCE-EEEECCcccCCHHHHHH-------HH
Confidence 12223223334444443222211 1344666799999999999999999 88999993332222111 00
Q ss_pred HHHHHH------HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287 142 DTVRKR------LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ 183 (196)
Q Consensus 142 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~ 183 (196)
+.+.+. ...|.+|+...+..++++..++. |...++++++++.
T Consensus 181 ~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~ 231 (353)
T 1oxx_K 181 ALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (353)
T ss_dssp HHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 111111 12456677777777776433332 3344678887653
No 124
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.13 E-value=2.9e-11 Score=94.78 Aligned_cols=166 Identities=18% Similarity=0.288 Sum_probs=87.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH------------------HhcCCh-----hhHHHHHHhhcC-
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE------------------IASNSE-----YGTTILNTIKEG- 65 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~------------------~~~~~~-----~~~~~~~~l~~~- 65 (196)
-+++|.||+||||||++++|+ |+...+.|.+.... +....+ ...+..+++..+
T Consensus 30 e~~~llGpnGsGKSTLLr~ia---Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~ 106 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIA---GLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPL 106 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHH---TSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHH---cCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHH
Confidence 478999999999999999999 87665555442111 010010 011122332221
Q ss_pred --CCCCHHHHHHHHHHHHh---cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCc
Q 029287 66 --KIVPSEVTVSLIQKEME---SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDN 140 (196)
Q Consensus 66 --~~~~~~~~~~~i~~~l~---~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~ 140 (196)
...........+.+.++ ......--...++.++.|++++++++...|++ ++||+|+..+....... ....
T Consensus 107 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l-LLLDEP~s~LD~~~r~~----l~~~ 181 (372)
T 1g29_1 107 KLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQV-FLMDEPLSNLDAKLRVR----MRAE 181 (372)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSE-EEEECTTTTSCHHHHHH----HHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCE-EEECCCCccCCHHHHHH----HHHH
Confidence 11122222222333333 22111111344666799999999999999998 88999994333322221 0000
Q ss_pred HHHHHHH---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287 141 IDTVRKR---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ 183 (196)
Q Consensus 141 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~ 183 (196)
...+.+. ...|.+|+...+..++++..++. |...++++++++.
T Consensus 182 l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 230 (372)
T 1g29_1 182 LKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230 (372)
T ss_dssp HHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhC
Confidence 1111111 12456677777777776433332 3345678887654
No 125
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.09 E-value=9.5e-11 Score=88.32 Aligned_cols=109 Identities=20% Similarity=0.358 Sum_probs=63.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH----------------HHHHhcCChh------hHHHHHHhhcC--
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL----------------RREIASNSEY------GTTILNTIKEG-- 65 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~----------------~~~~~~~~~~------~~~~~~~l~~~-- 65 (196)
-+++|.||+||||||++++|+ |+...+.|.+. ++.+...++. ..++.+++..+
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~---Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~ 111 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFN---GILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAV 111 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHT---TSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH---cCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHH
Confidence 478999999999999999999 76544433321 1111111111 11223332211
Q ss_pred -CCCCHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 66 -KIVPSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 66 -~~~~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
...+.....+.+.+.+...+-. ..-...++.++.|++++++++...|++ ++||+|+
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~l-LlLDEPt 171 (275)
T 3gfo_A 112 NMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV-LILDEPT 171 (275)
T ss_dssp TSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSE-EEEECTT
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCE-EEEECcc
Confidence 1123333333444444432211 112345667799999999999999999 7899999
No 126
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=99.09 E-value=1.2e-09 Score=82.69 Aligned_cols=157 Identities=11% Similarity=0.104 Sum_probs=86.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhC---CceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhc-
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYG---LTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMES- 83 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~- 83 (196)
.+++|++.|.+||||||+++.|.+.+. +.++.. ..+....... ..+..+...
T Consensus 85 ~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~----------~~Pt~eE~~~--------------~yl~R~~~~L 140 (304)
T 3czq_A 85 KRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVAL----------TKPTETERGQ--------------WYFQRYVATF 140 (304)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEEC----------CSCCHHHHTS--------------CTTHHHHTTC
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEe----------CCcChHHHhc--------------hHHHHHHHhc
Confidence 478999999999999999999999884 222221 1111111110 011122222
Q ss_pred -CCCCcEEEeCCCCC------------HHHH-------HHHHHH-h-CCCCcEEEEeecChHHHHHHHhhccCCCCC---
Q 029287 84 -SDSKKFLIDGFPRS------------EENR-------AAFERI-M-GAEPDIVLFFDCPEEEMVNRVLNRNEGRVD--- 138 (196)
Q Consensus 84 -~~~~~~iid~~~~~------------~~~~-------~~~~~~-~-~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~--- 138 (196)
..+..+|+|++..+ ..++ ..|.+. . ...|++.+||++|+++..+|+..|...-..
T Consensus 141 P~~G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~~dp~k~Wk 220 (304)
T 3czq_A 141 PTAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRHDPLKIWK 220 (304)
T ss_dssp CCTTCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHHHCTTTGGG
T ss_pred ccCCeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhhcCcccccC
Confidence 24577888887643 1111 111111 1 347999999999999999999877321110
Q ss_pred CcHHHHHH--HHHHHHhchHhHHHHHH-hcCcEEEEeCCCCHhHHHHHHHHHH
Q 029287 139 DNIDTVRK--RLQVFKALNLPVINYYA-RRGKLYTINAVGTVDEIFEQVRAVF 188 (196)
Q Consensus 139 ~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~I~~~~~~~~v~~~i~~~i 188 (196)
.+...+++ .+..|......++...+ +..+|.+|+++...-.-.+.++.++
T Consensus 221 ~s~~D~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk~~arl~v~~~Il 273 (304)
T 3czq_A 221 LSPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDKRRSRINVIRHML 273 (304)
T ss_dssp CCHHHHHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECCCcchHHHHHHHHHH
Confidence 12222332 23445555444444433 2468999999865433333333333
No 127
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.08 E-value=6.1e-10 Score=85.53 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=26.2
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHHHhC
Q 029287 6 GKGPFICFVLGGPGSGKGTQCAKIVKNYG 34 (196)
Q Consensus 6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~ 34 (196)
.+.|++|+|.|++||||||+++.|...++
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45789999999999999999999998874
No 128
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.06 E-value=4e-12 Score=97.12 Aligned_cols=109 Identities=19% Similarity=0.320 Sum_probs=64.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCCCC-H
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKIVP-S 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~~~-~ 70 (196)
-+++|+|++||||||++++|. |+...+.|.+ +++.+...++ +..++++++..+.... .
T Consensus 81 e~vaivG~sGsGKSTLl~ll~---gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~ 157 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLF---RFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGN 157 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHT---TSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCH
T ss_pred CEEEEECCCCchHHHHHHHHH---cCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCH
Confidence 478999999999999999999 5544333322 2332222221 1224677776654322 2
Q ss_pred HHHHHHH-----HHHHhcC-C-CCcEEE---eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 71 EVTVSLI-----QKEMESS-D-SKKFLI---DGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 71 ~~~~~~i-----~~~l~~~-~-~~~~ii---d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
......+ .+.+... . ....+- ..++.++.|++++++++...|++ ++||+|+
T Consensus 158 ~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~i-LlLDEPt 218 (306)
T 3nh6_A 158 DEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGI-ILLDEAT 218 (306)
T ss_dssp HHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE-EEEECCS
T ss_pred HHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCE-EEEECCc
Confidence 2221111 1111111 1 122221 23666799999999999999999 7799998
No 129
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.06 E-value=4.3e-09 Score=74.78 Aligned_cols=111 Identities=12% Similarity=0.136 Sum_probs=60.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCC-ceechhHHHHHHH-hcCChhhHHHHHHhhcCCCCCHHHHHHH----HHHHHhc
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGL-THLSAGELLRREI-ASNSEYGTTILNTIKEGKIVPSEVTVSL----IQKEMES 83 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~-~~i~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~----i~~~l~~ 83 (196)
.+++|.|++||||||+++.|++.++. .+++.+++..... ....+... . .......+. ......
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~~~~~~~~~~~-~---------~~~~~~~~~l~~~~~~~~~- 71 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWES-D---------ELLALTWKNITDLTVNFLL- 71 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGC-H---------HHHHHHHHHHHHHHHHHHH-
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhhccccccCccc-h---------hHHHHHHHHHHHHHHHHHh-
Confidence 57899999999999999999987754 6677655532110 00001000 0 000011111 111222
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHH---hCCC-CcEEEEeecChHHHHHHHhhcc
Q 029287 84 SDSKKFLIDGFPRSEENRAAFERI---MGAE-PDIVLFFDCPEEEMVNRVLNRN 133 (196)
Q Consensus 84 ~~~~~~iid~~~~~~~~~~~~~~~---~~~~-p~~~i~ld~~~~~~~~Rl~~r~ 133 (196)
....++++++. .......+... .... .-.+++|++|++.+.+|...|.
T Consensus 72 -~~~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~ 123 (189)
T 2bdt_A 72 -AQNDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRK 123 (189)
T ss_dssp -TTCEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSC
T ss_pred -cCCcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhcc
Confidence 23457788753 33322222222 1222 2335889999999999998873
No 130
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.06 E-value=5.4e-11 Score=89.89 Aligned_cols=110 Identities=17% Similarity=0.249 Sum_probs=63.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH----------------HHHHhcCChh-------hHHHHHHhhcCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL----------------RREIASNSEY-------GTTILNTIKEGK 66 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~----------------~~~~~~~~~~-------~~~~~~~l~~~~ 66 (196)
-+++|.||+||||||+++.|+ |+...+.|.+. ++.+....+. ..++.+++..+.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~---Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~ 124 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILN---AYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGA 124 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHT---TSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC
T ss_pred CEEEEECCCCCcHHHHHHHHh---CCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhh
Confidence 478999999999999999999 65544333221 1111111111 113445444321
Q ss_pred C-------CCHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 67 I-------VPSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 67 ~-------~~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
. .........+.+.+...+-. ..-+..++.++.|++.+++++...|++ ++||+|+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l-LlLDEPts 190 (279)
T 2ihy_A 125 FKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQV-LILDEPAA 190 (279)
T ss_dssp ---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSE-EEEESTTT
T ss_pred hhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCE-EEEeCCcc
Confidence 1 01111122333333322111 112445777899999999999999999 88999993
No 131
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.05 E-value=2.1e-10 Score=84.04 Aligned_cols=111 Identities=22% Similarity=0.220 Sum_probs=62.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------------H-HHHhcCCh-----hhHHHHHHhhcC-
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------------R-REIASNSE-----YGTTILNTIKEG- 65 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------------~-~~~~~~~~-----~~~~~~~~l~~~- 65 (196)
-+++|.||+||||||+++.|+ |+...+.|.+. + +.+...++ ...+..+++..+
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~ 107 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILG---LLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPM 107 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHT---TSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHH
Confidence 478999999999999999999 76544433321 1 22221111 011122222111
Q ss_pred --CCCCHHHHHHHHHHHHhc---CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 66 --KIVPSEVTVSLIQKEMES---SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 66 --~~~~~~~~~~~i~~~l~~---~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
.........+.+.+.++. ......-...++.++.|++.+++++...|++ ++||+|+.-
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l-llLDEPt~~ 170 (224)
T 2pcj_A 108 LKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPIL-LFADEPTGN 170 (224)
T ss_dssp HHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSE-EEEESTTTT
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCE-EEEeCCCCC
Confidence 011112122223333332 2211112345667799999999999999998 889999943
No 132
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.04 E-value=4.3e-09 Score=74.81 Aligned_cols=164 Identities=16% Similarity=0.231 Sum_probs=80.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhCC--ceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHH--h
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYGL--THLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEM--E 82 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l--~ 82 (196)
....+++|.|+|||||||+++.|+..++. .+++.+++.... ......+ ++.... .....+.+.+.... .
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~-~~~~~~~-----~~~~~~-~~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYI-KHGRIDP-----WLPQSH-QQNRMIMQIAADVAGRY 79 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTC-CSSCCCT-----TSSSHH-HHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhh-hcccccC-----Cccchh-hhhHHHHHHHHHHHHHH
Confidence 34578999999999999999999976533 356665554321 1000000 000000 00011111111111 0
Q ss_pred cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHH
Q 029287 83 SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYY 162 (196)
Q Consensus 83 ~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (196)
...+..++++.+.... ....+.. .. .+-.++++.++.+++..|+..|.... ..+.+..+.....+..... +
T Consensus 80 ~~~~~~~~~~~~~~~~-~l~~~~~-~~-~~~~~ls~~~~~~v~~~R~~~r~~~~-lld~~~~~~~~~~~~~l~~-----~ 150 (191)
T 1zp6_A 80 AKEGYFVILDGVVRPD-WLPAFTA-LA-RPLHYIVLRTTAAEAIERCLDRGGDS-LSDPLVVADLHSQFADLGA-----F 150 (191)
T ss_dssp HHTSCEEEECSCCCTT-TTHHHHT-TC-SCEEEEEEECCHHHHHHHHHTTCTTS-CCCHHHHHHHHHHTTCCGG-----G
T ss_pred hccCCeEEEeccCcHH-HHHHHHh-cC-CCeEEEEecCCHHHHHHHHHhcCCCc-cCCHHHHHHHHHHHhccCc-----c
Confidence 1123446677654321 1111111 12 23346999999999999999883211 1133433332333322211 1
Q ss_pred HhcCcEEEEeCC-CCHhHHHHHHHHHHHh
Q 029287 163 ARRGKLYTINAV-GTVDEIFEQVRAVFAA 190 (196)
Q Consensus 163 ~~~~~~~~I~~~-~~~~~v~~~i~~~i~~ 190 (196)
.. ++|+++ .+++++.++|.+.+..
T Consensus 151 ---~~-~~i~t~~~~~~~~~~~i~~~l~~ 175 (191)
T 1zp6_A 151 ---EH-HVLPVSGKDTDQALQSAINALQS 175 (191)
T ss_dssp ---GG-GEEECTTCCTTTTTTTTHHHHHH
T ss_pred ---cc-cEEECCCCCHHHHHHHHHHHHHh
Confidence 12 245554 6888888887776643
No 133
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=99.04 E-value=1.2e-09 Score=81.43 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=31.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL 44 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~ 44 (196)
++|+|.||+||||||+++.|++.++..+++.|.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~ 36 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQ 36 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHh
Confidence 58899999999999999999999999999887753
No 134
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.04 E-value=3.2e-11 Score=87.65 Aligned_cols=109 Identities=18% Similarity=0.167 Sum_probs=62.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH---------HHHhcCCh-----hhHHHHHHhhc-----CCCCCH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR---------REIASNSE-----YGTTILNTIKE-----GKIVPS 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~---------~~~~~~~~-----~~~~~~~~l~~-----~~~~~~ 70 (196)
-+++|.||+||||||++++|+ |+...+.|.+.. +.+...++ ...++.+++.. +....
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~---Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~- 111 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIS---TYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN- 111 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHT---TSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchH-
Confidence 378899999999999999999 765544443321 11111111 11122222211 11111
Q ss_pred HHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 71 EVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 71 ~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
......+.+.+..... .--...++.++.|++.++.++...|++ ++||+|+..
T Consensus 112 ~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~l-llLDEPts~ 163 (214)
T 1sgw_A 112 KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEI-YVLDDPVVA 163 (214)
T ss_dssp HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSE-EEEESTTTT
T ss_pred HHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCE-EEEECCCcC
Confidence 2222333333333221 112345677899999999999999999 779999954
No 135
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.02 E-value=1.5e-10 Score=86.41 Aligned_cols=109 Identities=18% Similarity=0.175 Sum_probs=61.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCCh-----hhHHHHHHhhcCC---CC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNSE-----YGTTILNTIKEGK---IV 68 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~~-----~~~~~~~~l~~~~---~~ 68 (196)
-+++|.||+||||||++++|+ |+...+.|.+. ++.+...++ ...++.+++.... ..
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~---Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~ 118 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIS---TLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYAS 118 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHT---TSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCC
Confidence 488999999999999999999 76554444331 111111111 1112222221110 01
Q ss_pred CHHH---HHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 69 PSEV---TVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 69 ~~~~---~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.... ....+.+.+........-+..++.++.|++.+++++...|++ ++||+|+
T Consensus 119 ~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~l-llLDEPt 174 (256)
T 1vpl_A 119 SSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRL-AILDEPT 174 (256)
T ss_dssp CHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSE-EEEESTT
T ss_pred ChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE-EEEeCCc
Confidence 1111 112222333221111112345777899999999999999999 7899999
No 136
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.02 E-value=7.7e-11 Score=87.57 Aligned_cols=109 Identities=21% Similarity=0.307 Sum_probs=62.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCC-CCH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKI-VPS 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~-~~~ 70 (196)
-+++|.|++||||||++++|+ |+...+.|.+ .++.+...++ ...++.+++..+.. ...
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~ 112 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQ---RFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV 112 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHT---TSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTCTTCCH
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHhccCCCCCH
Confidence 478999999999999999999 6654433322 1222222111 11245666654322 122
Q ss_pred HHHHHHH-----HHHHhcCC--CCcEE---EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 71 EVTVSLI-----QKEMESSD--SKKFL---IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 71 ~~~~~~i-----~~~l~~~~--~~~~i---id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
......+ .+.+.... ....+ ...++.++.|++.+++++...|++ ++||+|+
T Consensus 113 ~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~l-llLDEPt 173 (247)
T 2ff7_A 113 EKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI-LIFDEAT 173 (247)
T ss_dssp HHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSE-EEECCCC
T ss_pred HHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCE-EEEeCCc
Confidence 2221111 11111110 01110 234666799999999999999999 7799999
No 137
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.02 E-value=9e-11 Score=86.86 Aligned_cols=109 Identities=24% Similarity=0.320 Sum_probs=62.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH---------------HHHHhcCCh-----hhHHHHHHhhcCC--C
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL---------------RREIASNSE-----YGTTILNTIKEGK--I 67 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~---------------~~~~~~~~~-----~~~~~~~~l~~~~--~ 67 (196)
-+++|.||+||||||+++.|+ |+...+.|.+. ++.+...++ ...++.+++..+. .
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~ 109 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIA---GLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR 109 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHT---TSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC
Confidence 478999999999999999999 76544433321 111111111 1123444443321 1
Q ss_pred CCH---HHHHHHHHHHHh-cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 68 VPS---EVTVSLIQKEME-SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 68 ~~~---~~~~~~i~~~l~-~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
... ......+.+.+. ......--...++.++.|++.+++++...|++ ++||+|+
T Consensus 110 ~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~l-llLDEPt 167 (240)
T 1ji0_A 110 KDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKL-LMMDEPS 167 (240)
T ss_dssp CCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSE-EEEECTT
T ss_pred CCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCE-EEEcCCc
Confidence 111 111222233231 21111112456777899999999999999999 8899999
No 138
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.02 E-value=1.1e-10 Score=87.28 Aligned_cols=109 Identities=19% Similarity=0.240 Sum_probs=63.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH---------------HHHHHhcCChh-----hHHHHHHhhcCC---
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL---------------LRREIASNSEY-----GTTILNTIKEGK--- 66 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~---------------~~~~~~~~~~~-----~~~~~~~l~~~~--- 66 (196)
-+++|.||+||||||++++|+ |+...+.|.+ .++.+...++. ..++.+++..+.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~ 110 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVIT---GFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICP 110 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHT---TSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTST
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhh
Confidence 478999999999999999999 6654433322 12222222221 123444443221
Q ss_pred --C-----------CCHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 67 --I-----------VPSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 67 --~-----------~~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
. .........+.+.++..+-. .--+..++.++.|++.+++++...|++ ++||+|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~l-llLDEPt 181 (257)
T 1g6h_A 111 GESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKM-IVMDEPI 181 (257)
T ss_dssp TSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSE-EEEESTT
T ss_pred ccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCE-EEEeCCc
Confidence 0 11111222233333322111 112445777899999999999999998 8899999
No 139
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.02 E-value=1.6e-11 Score=91.53 Aligned_cols=109 Identities=17% Similarity=0.279 Sum_probs=64.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH-HHHhcCC-----hhhHHHHHHhhcCCC-------CCHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR-REIASNS-----EYGTTILNTIKEGKI-------VPSEVTVSL 76 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~-~~~~~~~-----~~~~~~~~~l~~~~~-------~~~~~~~~~ 76 (196)
-+++|.||+||||||+++.|+ |+...+.|.+.. +.+...+ ....++.+++..+.. .........
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~---Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~ 108 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLL---GIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQV 108 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHT---TSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHH
Confidence 478999999999999999999 876666665521 1111111 111234444432210 111111222
Q ss_pred HHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 77 IQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 77 i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+.+.+...+-.. .-...++.++.|++.+++++...|++ ++||+|+
T Consensus 109 ~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~l-llLDEPt 156 (253)
T 2nq2_C 109 AMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKL-ILLDEPT 156 (253)
T ss_dssp HHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSE-EEESSSS
T ss_pred HHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCE-EEEeCCc
Confidence 333333221111 12445777899999999999999999 8899999
No 140
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.00 E-value=1.1e-10 Score=87.72 Aligned_cols=109 Identities=26% Similarity=0.331 Sum_probs=63.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------HHHHhcCChh------hHHHHHHhhcCCC--CCH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------RREIASNSEY------GTTILNTIKEGKI--VPS 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------~~~~~~~~~~------~~~~~~~l~~~~~--~~~ 70 (196)
-+++|.|++||||||+++.|+ |+...+.|.+. ++.+....+. ..++.+++..+.. ...
T Consensus 34 e~~~liG~nGsGKSTLl~~i~---Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~ 110 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVA---GLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPD 110 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHT---TSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTT
T ss_pred CEEEEECCCCCcHHHHHHHHh---CCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCH
Confidence 478999999999999999999 76544433321 1111111111 1234444433211 111
Q ss_pred ---HHHHHHHHHHHhcC--CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 71 ---EVTVSLIQKEMESS--DSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 71 ---~~~~~~i~~~l~~~--~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
......+.+.+... .....-...++.++.|++.+++++...|++ ++||+|+
T Consensus 111 ~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~l-llLDEPt 166 (266)
T 2yz2_A 111 RDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDI-LILDEPL 166 (266)
T ss_dssp SCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSE-EEEESTT
T ss_pred HHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCE-EEEcCcc
Confidence 11222233333322 111112345777899999999999999999 7899999
No 141
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.96 E-value=1.8e-10 Score=85.64 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=63.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh-----hhHHHHHHhhcCCCCC-
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE-----YGTTILNTIKEGKIVP- 69 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~-----~~~~~~~~l~~~~~~~- 69 (196)
-+++|.||+||||||+++.|+ |+...+ |.+. ++.+...++ ...++.+++..+....
T Consensus 27 e~~~liG~NGsGKSTLlk~l~---Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 102 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMA---GMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKT 102 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHT---TSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTT
T ss_pred CEEEEECCCCCcHHHHHHHHh---CCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhccCC
Confidence 478999999999999999999 765444 4331 122221111 1223555554432111
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCc-------EEEEeecCh
Q 029287 70 SEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPD-------IVLFFDCPE 122 (196)
Q Consensus 70 ~~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~-------~~i~ld~~~ 122 (196)
.......+.+.+........-...++.++.|++.+++++...|+ + ++||+|+
T Consensus 103 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~l-llLDEPt 161 (249)
T 2qi9_C 103 RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQL-LLLDEPM 161 (249)
T ss_dssp CHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCE-EEESSTT
T ss_pred cHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeE-EEEECCc
Confidence 12222223333332211111244577789999999999888888 8 8899999
No 142
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.96 E-value=4.7e-09 Score=86.20 Aligned_cols=164 Identities=13% Similarity=0.142 Sum_probs=67.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhC------CceechhHHHHHHHhcCChhhH-HHHHHhhcCCCCCHHHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYG------LTHLSAGELLRREIASNSEYGT-TILNTIKEGKIVPSEVTVSLIQKE 80 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~------~~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~i~~~ 80 (196)
...+++|+|++||||||++++|+..++ +.+++.+++.. .+........ ...... .. ...+.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~-~l~~~l~f~~~~r~~~~--------r~-i~~v~q~ 437 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR-HLSSELGFSKAHRDVNV--------RR-IGFVASE 437 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH-HTTSSCCCSHHHHHHHH--------HH-HHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH-hhccccCCCHHHHHHHH--------HH-HHHHHHH
Confidence 347899999999999999999999873 33466655432 1111100000 000000 00 1111111
Q ss_pred HhcCCCCcEEEeCCCCCHHHHHHHHHHhCC-CCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHH
Q 029287 81 MESSDSKKFLIDGFPRSEENRAAFERIMGA-EPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVI 159 (196)
Q Consensus 81 l~~~~~~~~iid~~~~~~~~~~~~~~~~~~-~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (196)
+.. ....++..+.......+......+.. ..-++|||++|.+++.+|..+.. ........+.+ .+... .
T Consensus 438 l~~-~~~ivi~~~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~r~l--~~~~~~~~i~~---l~~~r-~--- 507 (552)
T 3cr8_A 438 ITK-NRGIAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDRKGL--YAKARAGLIPE---FTGVS-D--- 507 (552)
T ss_dssp HHH-TTCEEEECCCCCCHHHHHHHHHHHHTTSEEEEEEECC-----------------------------------C---
T ss_pred HHh-cCCEEEEecCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhccccc--cccccHhHHHH---HHhcc-c---
Confidence 221 22344444332222222222222221 12377999999999999975321 00000011111 11100 1
Q ss_pred HHHHhcCcEEEEeCC-CCHhHHHHHHHHHHHhh
Q 029287 160 NYYARRGKLYTINAV-GTVDEIFEQVRAVFAAL 191 (196)
Q Consensus 160 ~~~~~~~~~~~I~~~-~~~~~v~~~i~~~i~~~ 191 (196)
.++.....-++||++ .+++++.++|...+...
T Consensus 508 ~~e~P~~adl~Idt~~~s~~e~v~~Il~~L~~~ 540 (552)
T 3cr8_A 508 PYEVPETPELAIDTTGLAIDEAVQQILLKLEHE 540 (552)
T ss_dssp CCCCCSSCSEEECCSSCCHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCEEEECCCCCHHHHHHHHHHHHHhc
Confidence 011111222567765 68999999988877553
No 143
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.95 E-value=8.1e-09 Score=75.77 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=16.0
Q ss_pred eEEEEEcCCCCChHHHHHHHH-HHh
Q 029287 10 FICFVLGGPGSGKGTQCAKIV-KNY 33 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~-~~~ 33 (196)
.+++|+||+||||||++++|+ ..+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 589999999999999999999 765
No 144
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.95 E-value=4.7e-10 Score=93.12 Aligned_cols=168 Identities=13% Similarity=0.175 Sum_probs=87.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH-HHhcCC-----hhhHHHHHHhhc--CCCCCHHHHHHHHHHHHh
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR-EIASNS-----EYGTTILNTIKE--GKIVPSEVTVSLIQKEME 82 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~-~~~~~~-----~~~~~~~~~l~~--~~~~~~~~~~~~i~~~l~ 82 (196)
+++|.|++||||||+++.|+ |+...+.|..+.. .+...+ .......+.+.. ............+.+.+.
T Consensus 380 iv~iiG~NGsGKSTLlk~l~---Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~ 456 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLA---GALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLR 456 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHH---TSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh---cCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcC
Confidence 68999999999999999999 8766655531100 000000 000011121111 111111222233344444
Q ss_pred cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHH------HHHHHhchH
Q 029287 83 SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKR------LQVFKALNL 156 (196)
Q Consensus 83 ~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~------~~~~~~~~~ 156 (196)
.......-+..++.++.|++++++++...|++ ++||+|+.-+.-.-... -.+.+.+. ...+.+|+.
T Consensus 457 l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~l-LlLDEPT~gLD~~~~~~-------i~~ll~~l~~~~g~tviivtHdl 528 (608)
T 3j16_B 457 IDDIIDQEVQHLSGGELQRVAIVLALGIPADI-YLIDEPSAYLDSEQRII-------CSKVIRRFILHNKKTAFIVEHDF 528 (608)
T ss_dssp STTTSSSBSSSCCHHHHHHHHHHHHTTSCCSE-EEECCTTTTCCHHHHHH-------HHHHHHHHHHHHTCEEEEECSCH
T ss_pred ChhhhcCChhhCCHHHHHHHHHHHHHHhCCCE-EEEECCCCCCCHHHHHH-------HHHHHHHHHHhCCCEEEEEeCCH
Confidence 33222222455677799999999999999999 77999993221111110 00111110 113456777
Q ss_pred hHHHHHHhcCcEEE-----EeCCCCHhHHHHHHHHHHH
Q 029287 157 PVINYYARRGKLYT-----INAVGTVDEIFEQVRAVFA 189 (196)
Q Consensus 157 ~~~~~~~~~~~~~~-----I~~~~~~~~v~~~i~~~i~ 189 (196)
..+..++++..++. +.+.+++++++......+.
T Consensus 529 ~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~ 566 (608)
T 3j16_B 529 IMATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLK 566 (608)
T ss_dssp HHHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHH
T ss_pred HHHHHhCCEEEEEeCCCCeEEecCChHHHhhhhhHHHH
Confidence 77777776433322 2245678888766443333
No 145
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.95 E-value=5.9e-11 Score=88.93 Aligned_cols=107 Identities=18% Similarity=0.189 Sum_probs=61.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH-----------Hh-cCChh---hHHHHHHhhcCC---CCCHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE-----------IA-SNSEY---GTTILNTIKEGK---IVPSE 71 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~-----------~~-~~~~~---~~~~~~~l~~~~---~~~~~ 71 (196)
-+++|.|++||||||+++.|+ |+. .+.|.+.... +. ..++. ..++.+++.... .....
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~---Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~ 106 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAIS---GLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRD 106 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHT---TSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCHH
T ss_pred EEEEEECCCCCCHHHHHHHHh---CCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcchHHH
Confidence 378999999999999999999 876 6555442111 11 11111 112222221110 11111
Q ss_pred HHHHHHHHHHhcC-CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 72 VTVSLIQKEMESS-DSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 72 ~~~~~i~~~l~~~-~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
....+.+.+... ....--...++.++.|++.+++++...|++ ++||+|+
T Consensus 107 -~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l-llLDEPt 156 (263)
T 2pjz_A 107 -LFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEI-VGLDEPF 156 (263)
T ss_dssp -HHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSE-EEEECTT
T ss_pred -HHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCE-EEEECCc
Confidence 122222333322 111111345667799999999999999998 8899999
No 146
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.94 E-value=2.9e-08 Score=80.33 Aligned_cols=145 Identities=12% Similarity=0.200 Sum_probs=75.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhCC-----ceechhHHHHHHHhcCChhhHHHHHHhhcCCC----CCHHH---HH
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYGL-----THLSAGELLRREIASNSEYGTTILNTIKEGKI----VPSEV---TV 74 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~---~~ 74 (196)
..+++|++.|.+||||||+++.|++.++. ..++.+++.++. ....... +....... ..... ..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~-~g~~~~~----~ifd~~g~~~~r~re~~~~~~l 111 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDM-VKTYKSF----EFFLPDNEEGLKIRKQCALAAL 111 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH-HCSCCCG----GGGCTTCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhh-ccCCCcc----cccCCCCHHHHHHHHHHHHHHH
Confidence 34578999999999999999999998753 344555543332 2110000 00000000 00001 11
Q ss_pred HHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEee---cChHHHHHHHhhccCCCCC---Cc----HHHH
Q 029287 75 SLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFD---CPEEEMVNRVLNRNEGRVD---DN----IDTV 144 (196)
Q Consensus 75 ~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld---~~~~~~~~Rl~~r~~~~~~---~~----~~~~ 144 (196)
......+....+..+|+|........+..+..........+++++ .+++.+.+|+..+...+.. .+ .+.+
T Consensus 112 ~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~~~~rp~~~~~~~e~~~~~~ 191 (469)
T 1bif_A 112 NDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQVKLGSPDYVNRDSDEATEDF 191 (469)
T ss_dssp HHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHHTTTSTTTTTSCHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHhhhcCCcccCCCHHHHHHHH
Confidence 122444444456678899877776666555333211112346676 4578888887754322222 11 2445
Q ss_pred HHHHHHHHhchH
Q 029287 145 RKRLQVFKALNL 156 (196)
Q Consensus 145 ~~~~~~~~~~~~ 156 (196)
.+|...|.....
T Consensus 192 ~~R~~~y~~~ye 203 (469)
T 1bif_A 192 MRRIECYENSYE 203 (469)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHhccEeE
Confidence 556666665543
No 147
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.94 E-value=5e-10 Score=92.93 Aligned_cols=109 Identities=21% Similarity=0.283 Sum_probs=63.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCC--CCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGK--IVP 69 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~--~~~ 69 (196)
-+++|.||+||||||+++.|. |....+.|.+ .++.+...++ ...++++++..+. ...
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~---g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~ 446 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFT---RFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYT 446 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCC
Confidence 478999999999999999999 5443333322 1121221111 1235777776653 222
Q ss_pred HHHHHHHHH-----HHHhcC--CCCcEE---EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 70 SEVTVSLIQ-----KEMESS--DSKKFL---IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 70 ~~~~~~~i~-----~~l~~~--~~~~~i---id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
++...+.+. +.+... +.+..+ ...++.++.|++.+++++..+|++ ++||+|+
T Consensus 447 ~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~i-lllDEpt 508 (582)
T 3b5x_A 447 REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPV-LILDEAT 508 (582)
T ss_pred HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCE-EEEECcc
Confidence 222222111 111111 111111 134667799999999999999999 7799998
No 148
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.93 E-value=8.6e-09 Score=74.48 Aligned_cols=28 Identities=29% Similarity=0.466 Sum_probs=24.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhC
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYG 34 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~ 34 (196)
....+++|.|++||||||+++.|+..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999998774
No 149
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.93 E-value=2.8e-10 Score=85.67 Aligned_cols=109 Identities=19% Similarity=0.288 Sum_probs=62.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCCC-CH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKIV-PS 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~~-~~ 70 (196)
-+++|.|++||||||++++|+ |+...+.|.+ .++.+...++ ...++.+++..+... ..
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~---Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~ 122 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQ---NLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPT 122 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHT---TSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTCSSCCC
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHhhhcccCCh
Confidence 478999999999999999999 6554433322 1222222211 112456666543221 11
Q ss_pred -HHHHH-----HHHHHHhcCC--CCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 71 -EVTVS-----LIQKEMESSD--SKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 71 -~~~~~-----~i~~~l~~~~--~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
..... .+.+.+...+ .... -...++.++.|++.+++++...|++ ++||+|+
T Consensus 123 ~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~l-llLDEPt 184 (271)
T 2ixe_A 123 MEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRL-LILDNAT 184 (271)
T ss_dssp HHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSE-EEEESTT
T ss_pred HHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCE-EEEECCc
Confidence 11111 1122222110 0111 1334666799999999999999999 7899999
No 150
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.92 E-value=2.3e-10 Score=84.84 Aligned_cols=108 Identities=20% Similarity=0.170 Sum_probs=63.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH--------------HHhcCCh----hhHHHHHHhhcC-CC-CC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR--------------EIASNSE----YGTTILNTIKEG-KI-VP 69 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~--------------~~~~~~~----~~~~~~~~l~~~-~~-~~ 69 (196)
-+++|.||+||||||+++.|+ |+...+.|.+... .+...++ ...++.+++..+ .. ..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~ 105 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLE---RFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYT 105 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHT---TSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSCSC
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHhhhccCCCC
Confidence 588999999999999999999 6655444443211 1111111 011456666544 11 22
Q ss_pred HHHHHHHHHHHHhcCCC--------CcEE---EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 70 SEVTVSLIQKEMESSDS--------KKFL---IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 70 ~~~~~~~i~~~l~~~~~--------~~~i---id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.... ..+.+.+..... ...+ ...++.++.|++.+++++...|++ ++||+|+
T Consensus 106 ~~~~-~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l-llLDEPt 167 (243)
T 1mv5_A 106 DEDL-WQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI-LMLDEAT 167 (243)
T ss_dssp HHHH-HHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE-EEEECCS
T ss_pred HHHH-HHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE-EEEECCc
Confidence 2222 222222222111 1111 234666799999999999999998 7799999
No 151
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.90 E-value=1.9e-10 Score=90.56 Aligned_cols=109 Identities=18% Similarity=0.254 Sum_probs=62.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCChh----hHHHHHHhhcCCCCCHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSEY----GTTILNTIKEGKIVPSE 71 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~~----~~~~~~~l~~~~~~~~~ 71 (196)
-+++|.||+||||||++++|+ |+.. +.|.+. ++.+....+. ..++.+++.........
T Consensus 48 e~~~llGpsGsGKSTLLr~ia---Gl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~ 123 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFL---RLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQ 123 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHH---TCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTCCSCHH
T ss_pred CEEEEECCCCChHHHHHHHHh---CCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhccccCHH
Confidence 478999999999999999999 7665 444331 2222221111 11344555422222332
Q ss_pred HHHHHHHHHHhc------CCC--CcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 72 VTVSLIQKEMES------SDS--KKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 72 ~~~~~i~~~l~~------~~~--~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
.+.+ +.+.+.. ... ...+.+ .++.++.|++++++++...|++ ++||+|+..
T Consensus 124 ~v~~-~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~l-LLLDEPts~ 185 (390)
T 3gd7_A 124 EIWK-VADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI-LLLDEPSAH 185 (390)
T ss_dssp HHHH-HHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCE-EEEESHHHH
T ss_pred HHHH-HHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCE-EEEeCCccC
Confidence 2222 1222211 111 112111 1666799999999999999999 779999943
No 152
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.87 E-value=8.8e-10 Score=80.96 Aligned_cols=108 Identities=20% Similarity=0.219 Sum_probs=63.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH-Hhc-----CChhhHHHHHHhhcCCCCCHHHHHHH-----HH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE-IAS-----NSEYGTTILNTIKEGKIVPSEVTVSL-----IQ 78 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~-~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~-----i~ 78 (196)
-+++|.||+||||||+++.|+ |+...+.|.+.... +.. ..... ++.+++..+........... +.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~ 110 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIM---GELEPSEGKIKHSGRISFCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLE 110 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHT---TSSCCSEEEEEECSCEEEECSSCCCCSB-CHHHHHHTTSCCCHHHHHHHHHHTTCH
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCcCCccEEEECCEEEEEecCCcccCC-CHHHHhhccCCcChHHHHHHHHHhCcH
Confidence 478999999999999999999 76655554432110 000 01112 45566654432222111111 11
Q ss_pred HHHhcCCC--CcEE---EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 79 KEMESSDS--KKFL---IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 79 ~~l~~~~~--~~~i---id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+.+..... ...+ ...++.++.|++.+++++...|++ ++||+|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l-llLDEPt 158 (229)
T 2pze_A 111 EDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL-YLLDSPF 158 (229)
T ss_dssp HHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSE-EEEESTT
T ss_pred HHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCE-EEEECcc
Confidence 11211110 0011 235667799999999999999999 7899999
No 153
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.86 E-value=3.6e-09 Score=81.05 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=25.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhC
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYG 34 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~ 34 (196)
..+.+++|+|++||||||+++.|+..++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568999999999999999999998765
No 154
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.85 E-value=3.8e-10 Score=83.36 Aligned_cols=108 Identities=17% Similarity=0.230 Sum_probs=63.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH-HhcCCh----hhHHHHHHhhcCCCCCHHHHHHHHHHH----
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE-IASNSE----YGTTILNTIKEGKIVPSEVTVSLIQKE---- 80 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~-~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~i~~~---- 80 (196)
-+++|.||+||||||+++.|+ |+...+.|.+.... +...++ ...++.+++..+....... ...+.+.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~~~~~~~-~~~~~~~~~l~ 107 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALL---AEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPY-YRSVIQACALL 107 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHT---TCSEEEEEEEEECSCEEEECSSCCCCSEEHHHHHHTTSCCCTTH-HHHHHHHTTCH
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCCCCCCceEEECCEEEEEcCCCcCCCcCHHHHhhCccccCHHH-HHHHHHHHhhH
Confidence 488999999999999999999 87766655542110 000000 1223455554432222111 1111121
Q ss_pred --HhcCCC--CcEE---EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 81 --MESSDS--KKFL---IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 81 --l~~~~~--~~~i---id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+...+. ...+ ...++.++.|++.+++++...|++ ++||+|+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l-llLDEPt 155 (237)
T 2cbz_A 108 PDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADI-YLFDDPL 155 (237)
T ss_dssp HHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSE-EEEESTT
T ss_pred HHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE-EEEeCcc
Confidence 111110 0111 234667799999999999999999 7799999
No 155
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.82 E-value=1.3e-08 Score=84.55 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=27.0
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+..++.++.|++++++++...|++ ++||+|+
T Consensus 219 ~~~LSgGe~Qrv~iAraL~~~p~l-lllDEPt 249 (608)
T 3j16_B 219 IEKLSGGELQRFAIGMSCVQEADV-YMFDEPS 249 (608)
T ss_dssp TTTCCHHHHHHHHHHHHHHSCCSE-EEEECTT
T ss_pred hHHCCHHHHHHHHHHHHHHhCCCE-EEEECcc
Confidence 445667799999999999999998 7899999
No 156
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.82 E-value=1.8e-09 Score=80.35 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 94 FPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
++.++.|++.+++++...|++ ++||+|+
T Consensus 144 LSgGqkQrv~iAraL~~~p~l-llLDEPt 171 (250)
T 2d2e_A 144 FSGGEKKRNEILQLLVLEPTY-AVLDETD 171 (250)
T ss_dssp ----HHHHHHHHHHHHHCCSE-EEEECGG
T ss_pred CCHHHHHHHHHHHHHHcCCCE-EEEeCCC
Confidence 788899999999999999998 7899999
No 157
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.81 E-value=2.5e-09 Score=82.23 Aligned_cols=35 Identities=14% Similarity=0.417 Sum_probs=31.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL 43 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~ 43 (196)
+.+|+|.||+||||||++..|++.++..+++.|.+
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 35899999999999999999999999888887654
No 158
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.78 E-value=3e-09 Score=80.70 Aligned_cols=107 Identities=20% Similarity=0.213 Sum_probs=62.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH-HhcC-----ChhhHHHHHHhhcCCCCCHHHHHHH-----HH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE-IASN-----SEYGTTILNTIKEGKIVPSEVTVSL-----IQ 78 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~-~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~-----i~ 78 (196)
-+++|.|++||||||++++|+ |+...+.|.+.... +... .... ++.+++. +........... +.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~---Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~-tv~enl~-~~~~~~~~~~~~~~~~~l~ 139 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIM---GELEPSEGKIKHSGRISFCSQNSWIMPG-TIKENII-GVSYDEYRYRSVIKACQLE 139 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHT---TSSCEEEEEEECCSCEEEECSSCCCCSS-BHHHHHH-TTCCCHHHHHHHHHHTTCH
T ss_pred CEEEEECCCCCcHHHHHHHHh---cCCCCCCcEEEECCEEEEEeCCCccCcc-cHHHHhh-CcccchHHHHHHHHHhChH
Confidence 478999999999999999999 87666555542110 0000 0112 4555555 322222111111 11
Q ss_pred HHHhcCCC--CcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 79 KEMESSDS--KKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 79 ~~l~~~~~--~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+.+..... ... -...++.++.|++.+++++...|++ ++||+|+
T Consensus 140 ~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~l-llLDEPt 187 (290)
T 2bbs_A 140 EDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL-YLLDSPF 187 (290)
T ss_dssp HHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSE-EEEESTT
T ss_pred HHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCE-EEEECCc
Confidence 11211110 000 1345777899999999999999999 7899999
No 159
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.78 E-value=4.3e-09 Score=74.37 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
.+++|.|||||||||+++.|...+
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 588999999999999999999875
No 160
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.77 E-value=1.2e-09 Score=81.71 Aligned_cols=108 Identities=23% Similarity=0.351 Sum_probs=60.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCC-CCH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKI-VPS 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~-~~~ 70 (196)
-+++|.||+||||||+++.|+ |+... .|.+ .++.+...++ ...++.+++..+.. ...
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~---Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~ 122 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLY---RFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATD 122 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHT---TSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCTTCCH
T ss_pred CEEEEECCCCCCHHHHHHHHh---ccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccCCCCCH
Confidence 488999999999999999999 65321 2222 1111111111 01145555554321 122
Q ss_pred HHHHHHH-----HHHHh-cCCC-CcEE---EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 71 EVTVSLI-----QKEME-SSDS-KKFL---IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 71 ~~~~~~i-----~~~l~-~~~~-~~~i---id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
......+ .+.+. .... ...+ ...++.++.|++.+++++...|++ ++||+|+
T Consensus 123 ~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l-llLDEPt 183 (260)
T 2ghi_A 123 EEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKI-VIFDEAT 183 (260)
T ss_dssp HHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSE-EEEECCC
T ss_pred HHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCE-EEEECcc
Confidence 2111111 11111 1010 1111 235667799999999999999999 7799999
No 161
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.77 E-value=1.3e-07 Score=68.77 Aligned_cols=162 Identities=14% Similarity=0.139 Sum_probs=82.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCC--ceech--hHH-HH----HHHhcCChhhHHHHHHhhcCCC---------CCH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGL--THLSA--GEL-LR----REIASNSEYGTTILNTIKEGKI---------VPS 70 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~--~~i~~--~~~-~~----~~~~~~~~~~~~~~~~l~~~~~---------~~~ 70 (196)
..+++|.||+||||||+++.|...+.. ...+. ... .+ +...........+......+.. ...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~yg 95 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYG 95 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhccCC
Confidence 468899999999999999999976531 11111 000 00 0001111111122222221110 000
Q ss_pred HHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeec-ChHHHHHHHhhccCCCCCCcHHHHHHHHH
Q 029287 71 EVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDC-PEEEMVNRVLNRNEGRVDDNIDTVRKRLQ 149 (196)
Q Consensus 71 ~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~-~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~ 149 (196)
. ....+.+.+.. +..+++| ........+...+. . ..+|++-. +.+.+.+|+..| ..++.+.+.+|+.
T Consensus 96 ~-~~~~v~~~l~~--G~illLD---LD~~~~~~i~~~l~-~-~~tI~i~th~~~~l~~Rl~~r----G~~~~e~i~~rl~ 163 (219)
T 1s96_A 96 T-SREAIEQVLAT--GVDVFLD---IDWQGAQQIRQKMP-H-ARSIFILPPSKIELDRRLRGR----GQDSEEVIAKRMA 163 (219)
T ss_dssp E-EHHHHHHHHTT--TCEEEEE---CCHHHHHHHHHHCT-T-CEEEEEECSSHHHHHHHHHTT----SCSCHHHHHHHHH
T ss_pred C-CHHHHHHHHhc--CCeEEEE---ECHHHHHHHHHHcc-C-CEEEEEECCCHHHHHHHHHHc----CCCCHHHHHHHHH
Confidence 0 01234445553 5778898 33333344444433 2 45565655 558888899776 2456777777664
Q ss_pred HHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287 150 VFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFA 189 (196)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~ 189 (196)
..... .. +......+ |.+ .+.++..+++..++.
T Consensus 164 ~a~~e----~~-~~~~~d~~-i~N-d~l~~a~~~l~~ii~ 196 (219)
T 1s96_A 164 QAVAE----MS-HYAEYDYL-IVN-DDFDTALTDLKTIIR 196 (219)
T ss_dssp HHHHH----HT-TGGGSSEE-EEC-SSHHHHHHHHHHHHH
T ss_pred HHHHH----Hh-hccCCCEE-EEC-cCHHHHHHHHHHHHH
Confidence 33211 11 12233444 444 488888888887774
No 162
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.77 E-value=1.1e-07 Score=68.06 Aligned_cols=71 Identities=15% Similarity=0.184 Sum_probs=40.4
Q ss_pred CCcEEEEeecC-hHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287 111 EPDIVLFFDCP-EEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFA 189 (196)
Q Consensus 111 ~p~~~i~ld~~-~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~ 189 (196)
.|.+ ++|+.| ...+.+|+..+ ..++.+.+.+++........ ... .......+++ ++ +.++..+++.+++.
T Consensus 116 ~~~~-~~l~~p~~~ilde~~~~~----d~~~e~~i~~~l~~~~~~~~-~a~-~~~~~D~iiv-nd-~le~a~~~l~~ii~ 186 (198)
T 1lvg_A 116 CPIY-IFVQPPSLDVLEQRLRLR----NTETEESLAKRLAAARTDME-SSK-EPGLFDLVII-ND-DLDKAYATLKQALS 186 (198)
T ss_dssp CCEE-EEEECSCHHHHHHHHHHH----TCSCHHHHHHHHHHHHHHTT-GGG-STTTCSEEEE-CS-SHHHHHHHHHHHTH
T ss_pred CcEE-EEEeCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHHH-Hhh-ccCCceEEEE-CC-CHHHHHHHHHHHHH
Confidence 3444 677776 47778888887 34466777776554432211 100 0122344333 33 68888888887765
Q ss_pred h
Q 029287 190 A 190 (196)
Q Consensus 190 ~ 190 (196)
.
T Consensus 187 ~ 187 (198)
T 1lvg_A 187 E 187 (198)
T ss_dssp H
T ss_pred H
Confidence 4
No 163
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.76 E-value=5.3e-08 Score=69.58 Aligned_cols=26 Identities=12% Similarity=0.231 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhC
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYG 34 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~ 34 (196)
..+|+|.||+||||||+++.|.+.+.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 36888999999999999999998874
No 164
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.75 E-value=4.2e-09 Score=79.06 Aligned_cols=29 Identities=24% Similarity=0.496 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 93 GFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.++.++.|++.+++++...|++ ++||+|+
T Consensus 164 ~LSgGq~QRv~iAraL~~~p~l-LlLDEPt 192 (267)
T 2zu0_C 164 GFSGGEKKRNDILQMAVLEPEL-CILDESD 192 (267)
T ss_dssp TCCHHHHHHHHHHHHHHHCCSE-EEEESTT
T ss_pred CCCHHHHHHHHHHHHHHhCCCE-EEEeCCC
Confidence 3777799999999999999999 7899999
No 165
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.74 E-value=1.5e-09 Score=89.12 Aligned_cols=106 Identities=17% Similarity=0.258 Sum_probs=59.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH--HhcCC-----hhhHHHHHHhhc--CCCC-CHHHHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE--IASNS-----EYGTTILNTIKE--GKIV-PSEVTVSLIQK 79 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~--~~~~~-----~~~~~~~~~l~~--~~~~-~~~~~~~~i~~ 79 (196)
-+++|.|++||||||++++|+ |....+.|.+.... +...+ .....+.+++.. .... .... .+.+
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~---~~~~ 368 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILV---GEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSW---FFEE 368 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHT---TSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSH---HHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHH---HHHH
Confidence 478999999999999999999 77666655542110 00000 001112222211 0100 1111 1122
Q ss_pred HHhcCC---CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 80 EMESSD---SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 80 ~l~~~~---~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.+.... ....-+..++.++.|++++++++...|++ ++||+|+
T Consensus 369 ~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~l-LlLDEPT 413 (538)
T 3ozx_A 369 VTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADL-YVLDQPS 413 (538)
T ss_dssp TTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSE-EEEESTT
T ss_pred HHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE-EEEeCCc
Confidence 222111 11112344666799999999999999999 7799999
No 166
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.74 E-value=9e-10 Score=91.63 Aligned_cols=109 Identities=22% Similarity=0.325 Sum_probs=64.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCC----
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKI---- 67 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~---- 67 (196)
-+++|.||+||||||+++.|. |....+.|.+ .++.+...++ ...++++++..+..
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~---g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~ 447 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLL---RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSS 447 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHT---TSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTT
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccc
Confidence 478999999999999999999 5544333322 1222222111 11257777765543
Q ss_pred CCHHHHHHHHHH-----HHhc-CCC-CcEE---EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 68 VPSEVTVSLIQK-----EMES-SDS-KKFL---IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 68 ~~~~~~~~~i~~-----~l~~-~~~-~~~i---id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
..++...+.+.. .+.. ..+ +..+ ...++.++.|++.+++++..+|++ ++||+|+
T Consensus 448 ~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~i-lllDEpt 511 (595)
T 2yl4_A 448 VTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKI-LLLDEAT 511 (595)
T ss_dssp SCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSE-EEEECCC
T ss_pred cCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCE-EEEECcc
Confidence 233322222111 1111 111 1111 134667799999999999999998 7799998
No 167
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.74 E-value=3.2e-09 Score=88.34 Aligned_cols=105 Identities=24% Similarity=0.356 Sum_probs=63.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCC-CCH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKI-VPS 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~-~~~ 70 (196)
-+++|.||+||||||+++.|. |....+.|.+ .++.+...++ ...++++++..+.. ..+
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~---g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~ 458 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLM---RFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATD 458 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHT---TSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCT
T ss_pred CEEEEECCCCCcHHHHHHHHh---cCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCH
Confidence 488999999999999999999 5544333322 2333332222 12256677765533 222
Q ss_pred HHHHHHHHHHHhcCCC-----------CcEE---EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 71 EVTVSLIQKEMESSDS-----------KKFL---IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 71 ~~~~~~i~~~l~~~~~-----------~~~i---id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+. +.+.+..... +..+ ...++.++.|++.+++++..+|++ ++||+|+
T Consensus 459 ~~----~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~i-lllDEpt 519 (598)
T 3qf4_B 459 EE----IKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKI-LILDEAT 519 (598)
T ss_dssp TH----HHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSE-EEECCCC
T ss_pred HH----HHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE-EEEECCc
Confidence 22 2222221111 1111 123666799999999999999999 7799998
No 168
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.73 E-value=1.1e-09 Score=90.89 Aligned_cols=109 Identities=20% Similarity=0.275 Sum_probs=64.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCCC-CH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKIV-PS 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~~-~~ 70 (196)
-+++|.||+||||||+++.|. |....+.|.+ .++.+...++ ...++++++..+... .+
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~---g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~ 444 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIP---RFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATD 444 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTT---TSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCH
T ss_pred CEEEEECCCCChHHHHHHHHh---cCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCH
Confidence 488999999999999999999 5544333322 2222222221 122567777655432 23
Q ss_pred HHHHHHHH-----HHHhcC-CC-CcEEE---eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 71 EVTVSLIQ-----KEMESS-DS-KKFLI---DGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 71 ~~~~~~i~-----~~l~~~-~~-~~~ii---d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+...+... +.+... .+ +..+- ..++.+++|++.+++++..+|++ ++||+|+
T Consensus 445 ~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~i-lllDEpt 505 (578)
T 4a82_A 445 EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPI-LILDEAT 505 (578)
T ss_dssp HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSE-EEEESTT
T ss_pred HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCE-EEEECcc
Confidence 22222211 111111 11 12211 23666799999999999999999 7799998
No 169
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.72 E-value=4.1e-09 Score=87.48 Aligned_cols=109 Identities=24% Similarity=0.323 Sum_probs=65.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCCC-CH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKIV-PS 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~~-~~ 70 (196)
-+++|.||+||||||+++.|. |....+.|.+ .++.+...++ ...++++++..+... .+
T Consensus 370 e~~~ivG~sGsGKSTll~~l~---g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~ 446 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIP---RLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATD 446 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTT---TSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCH
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCH
Confidence 478999999999999999999 5443333322 2333332222 122577777765432 33
Q ss_pred HHHHHHH-----HHHHhcC-CC-CcEEE---eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 71 EVTVSLI-----QKEMESS-DS-KKFLI---DGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 71 ~~~~~~i-----~~~l~~~-~~-~~~ii---d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
....+.. .+.+... .+ +..+- ..++.++.|++.+++++..+|++ ++||+|+
T Consensus 447 ~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~i-lllDEpt 507 (587)
T 3qf4_A 447 DEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKV-LILDDCT 507 (587)
T ss_dssp HHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSE-EEEESCC
T ss_pred HHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCE-EEEECCc
Confidence 3222221 1122111 11 22221 23566799999999999999999 7799998
No 170
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.72 E-value=2.2e-09 Score=89.03 Aligned_cols=109 Identities=21% Similarity=0.290 Sum_probs=63.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCC--CCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGK--IVP 69 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~--~~~ 69 (196)
-+++|.||+||||||+++.|. |....+.|.+ .++.+...++ ...++++++..+. ...
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~---g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~ 446 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLIT---RFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYS 446 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHT---TTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCC
T ss_pred CEEEEECCCCCCHHHHHHHHh---hccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCC
Confidence 478999999999999999999 5443332222 2222222211 1125677776553 223
Q ss_pred HHHHHHHHH-----HHHhcCC-C-CcEE---EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 70 SEVTVSLIQ-----KEMESSD-S-KKFL---IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 70 ~~~~~~~i~-----~~l~~~~-~-~~~i---id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
++...+.+. +.+...+ + +..+ ...++.++.|++.+++++..+|++ ++||+|+
T Consensus 447 ~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~i-lllDEpt 508 (582)
T 3b60_A 447 REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPI-LILDEAT 508 (582)
T ss_dssp HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSE-EEEETTT
T ss_pred HHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCE-EEEECcc
Confidence 322222111 1111100 1 1111 124666799999999999999998 7799998
No 171
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.72 E-value=1.6e-08 Score=82.95 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=27.3
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+..++.++.|++++++++...|++ ++||+|+
T Consensus 136 ~~~LSgGe~Qrv~iA~aL~~~p~i-lllDEPt 166 (538)
T 3ozx_A 136 ANILSGGGLQRLLVAASLLREADV-YIFDQPS 166 (538)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCSE-EEEESTT
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCE-EEEECCc
Confidence 445677799999999999999999 7799999
No 172
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=98.72 E-value=4.8e-08 Score=79.07 Aligned_cols=163 Identities=13% Similarity=0.095 Sum_probs=83.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhCC---ceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYGL---THLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMES 83 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~ 83 (196)
+.+++|++.|.+||||+|+.+.|.+.++- .+...+ .|...... ..... .....+ .
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~----------~Pt~~E~~------~~yl~-----R~~~~l-P 98 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFL----------RPSDEELE------RPPQW-----RFWRRL-P 98 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECS----------SCCHHHHT------SCTTH-----HHHHHC-C
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeC----------CCChhhcc------CChhh-----hHHHhC-C
Confidence 45789999999999999999999999842 222210 01110000 00000 011111 1
Q ss_pred CCCCcEEEeCCCCC------------HH-------HHHHHHHH--hCCCCcEEEEeecChHHHHHHHhhccCCCCC----
Q 029287 84 SDSKKFLIDGFPRS------------EE-------NRAAFERI--MGAEPDIVLFFDCPEEEMVNRVLNRNEGRVD---- 138 (196)
Q Consensus 84 ~~~~~~iid~~~~~------------~~-------~~~~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~---- 138 (196)
..+..+|.|++.-+ .. +...|... -...|++.+||++|+++..+|+..|..+-..
T Consensus 99 ~~G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~~p~k~Wk~ 178 (500)
T 3czp_A 99 PKGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEKDPQHSWKL 178 (500)
T ss_dssp CTTCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC-------------
T ss_pred CCCeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhcCCcccCCC
Confidence 23455667765321 11 11122222 2456889999999999999999988421000
Q ss_pred --CcHHHHHHHHHHHHhchHhHHHHHHh-cCcEEEEeCCC---CHhHHHHHHHHHHHhhh
Q 029287 139 --DNIDTVRKRLQVFKALNLPVINYYAR-RGKLYTINAVG---TVDEIFEQVRAVFAALK 192 (196)
Q Consensus 139 --~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~I~~~~---~~~~v~~~i~~~i~~~~ 192 (196)
.+.... +....|......++...+. .++|++|+++. ....+.+.|.+.|...+
T Consensus 179 s~~D~~~~-~~~~~Y~~a~e~~l~~T~t~~APW~vI~a~dk~~arl~v~~~il~~l~~~l 237 (500)
T 3czp_A 179 SPLDWKQS-EVYDRFVHYGERVLRRTSRDYAPWYVVEGADERYRALTVGRILLEGLQAAL 237 (500)
T ss_dssp CSSCTTSH-HHHHHHHHHHHHHHHHHCBTTBCEEEEECSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHH-HhHHHHHHHHHHHHHhhcCCCCCEEEEECCCcchhHHHHHHHHHHHHHHHH
Confidence 011111 1223444443444443333 35899999986 23455666666665544
No 173
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.71 E-value=1.5e-08 Score=91.15 Aligned_cols=109 Identities=24% Similarity=0.393 Sum_probs=70.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhH--------------HHHHHHhcCCh----hhHHHHHHhhcCCC-CCH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGE--------------LLRREIASNSE----YGTTILNTIKEGKI-VPS 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~--------------~~~~~~~~~~~----~~~~~~~~l~~~~~-~~~ 70 (196)
-.++|+|++||||||+++.|...| .++.|. .+|+.+...++ ...++++++..|.. ..+
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~~---~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~ 521 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRYY---DVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITR 521 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTSS---CCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCH
T ss_pred cEEEEEecCCCcHHHHHHHhcccc---ccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchH
Confidence 478999999999999999999554 222222 23444444333 23457888887765 344
Q ss_pred HHHHHHHHH-----HHh-cCC-CCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 71 EVTVSLIQK-----EME-SSD-SKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 71 ~~~~~~i~~-----~l~-~~~-~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+.+.+.+.. .+. .++ .+..|-+ .++.+++|++++++++..+|++ ++||+|+
T Consensus 522 ~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~I-liLDE~t 582 (1321)
T 4f4c_A 522 EEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKI-LLLDEAT 582 (1321)
T ss_dssp HHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSE-EEEESTT
T ss_pred HHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCE-EEEeccc
Confidence 433333222 122 122 2444433 2666799999999999999999 7799987
No 174
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.70 E-value=3.5e-09 Score=95.08 Aligned_cols=112 Identities=22% Similarity=0.290 Sum_probs=67.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh----CCceechhH-------HHHHHHhcCCh----hhHHHHHHhhcCC---CCCHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY----GLTHLSAGE-------LLRREIASNSE----YGTTILNTIKEGK---IVPSE 71 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~----~~~~i~~~~-------~~~~~~~~~~~----~~~~~~~~l~~~~---~~~~~ 71 (196)
-.++|+|++||||||+++.|..-| |-..++.-+ -+|+.+...++ +..++++++..|. ...++
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ 1185 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMA 1185 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHH
T ss_pred CEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHH
Confidence 478999999999999999999544 222222111 13333333332 2335788876552 23344
Q ss_pred HHHHHHH-----HHHhc-CC-CCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 72 VTVSLIQ-----KEMES-SD-SKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 72 ~~~~~i~-----~~l~~-~~-~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.+.+.+. +.+.. ++ .+..|-+ .++.+++|++.+++++..+|.+ ++||+++
T Consensus 1186 ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~I-LiLDEaT 1245 (1321)
T 4f4c_A 1186 QVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKI-LLLDEAT 1245 (1321)
T ss_dssp HHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSE-EEEESCC
T ss_pred HHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCE-EEEeCcc
Confidence 3333222 11111 12 2344433 3667799999999999999998 7799987
No 175
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=98.68 E-value=5.5e-08 Score=78.70 Aligned_cols=162 Identities=7% Similarity=0.080 Sum_probs=90.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhC---CceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYG---LTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMES 83 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~ 83 (196)
+.+++|++.|.+||||+|+.+.|.+.++ +.+.... .|..... +. ..+.++...
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~----------~Pt~~E~------~~--------~yl~R~~~~ 353 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIA----------APTEEER------AQ--------PYLWRFWRH 353 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECC----------SCCHHHH------TS--------CTTHHHHTT
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeC----------CCChhhh------cc--------hHHHHHHHh
Confidence 3578999999999999999999998873 3222210 1111111 00 011122222
Q ss_pred --CCCCcEEEeCCCCC------------HHHH-------HHHHHH--hCCCCcEEEEeecChHHHHHHHhhccCCCCC--
Q 029287 84 --SDSKKFLIDGFPRS------------EENR-------AAFERI--MGAEPDIVLFFDCPEEEMVNRVLNRNEGRVD-- 138 (196)
Q Consensus 84 --~~~~~~iid~~~~~------------~~~~-------~~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~-- 138 (196)
..+..+|.|++.-+ ..++ ..|... -...|.+.+||++|+++..+|+..|...-..
T Consensus 354 lP~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~p~k~W 433 (500)
T 3czp_A 354 IPARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKTPYKRY 433 (500)
T ss_dssp CCCTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHHSSCTTS
T ss_pred CCCCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhcCCcccC
Confidence 24566788886533 1211 122111 1346889999999999999999988421110
Q ss_pred -CcHHHHH--HHHHHHHhchHhHHHHHHh-cCcEEEEeCCC---CHhHHHHHHHHHHHhhh
Q 029287 139 -DNIDTVR--KRLQVFKALNLPVINYYAR-RGKLYTINAVG---TVDEIFEQVRAVFAALK 192 (196)
Q Consensus 139 -~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~I~~~~---~~~~v~~~i~~~i~~~~ 192 (196)
.+...++ +....|......++...+. .++|.+|+++. ..-.+.+.|.+.|...+
T Consensus 434 k~s~~D~~~~~~w~~y~~a~~~~l~~T~t~~APW~vI~a~dk~~arl~v~~~i~~~l~~~l 494 (500)
T 3czp_A 434 KITEEDWRNRDKWDQYVDAVGDMVDRTSTEIAPWTLVEANDKRFARVKVLRTINDAIEAAY 494 (500)
T ss_dssp CCCSSTTTGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHHHHhccCCCCEEEEECCCccchHHHHHHHHHHHHHHHH
Confidence 0111111 1233455555555554444 45899999986 23455566666665544
No 176
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.67 E-value=3.5e-09 Score=87.99 Aligned_cols=109 Identities=18% Similarity=0.246 Sum_probs=61.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH-HHhcCCh-----hhHHHHHHhhcC--CCCCHHHHHHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR-EIASNSE-----YGTTILNTIKEG--KIVPSEVTVSLIQKEM 81 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~-~~~~~~~-----~~~~~~~~l~~~--~~~~~~~~~~~i~~~l 81 (196)
-+++|.||+||||||+++.|+ |....+.|.+... .+...++ ...++.+++... ...........+.+.+
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~---Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~ 459 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLA---GVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPL 459 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHH---TSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc
Confidence 478999999999999999999 7766555554210 0000000 011112222110 0000011122223333
Q ss_pred hcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 82 ESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 82 ~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.......--+..++.++.|++.+++++...|++ ++||+|+
T Consensus 460 ~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~l-LlLDEPt 499 (607)
T 3bk7_A 460 GIIDLYDRNVEDLSGGELQRVAIAATLLRDADI-YLLDEPS 499 (607)
T ss_dssp TCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSE-EEEECTT
T ss_pred CCchHhcCChhhCCHHHHHHHHHHHHHHhCCCE-EEEeCCc
Confidence 332221112445777899999999999999999 7899999
No 177
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.62 E-value=2.5e-08 Score=81.95 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=27.1
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+..++.++.|++.+++++...|++ ++||+|+
T Consensus 156 ~~~LSgGekQRv~iAraL~~~P~l-LlLDEPT 186 (538)
T 1yqt_A 156 IQHLSGGELQRVAIAAALLRNATF-YFFDEPS 186 (538)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCSE-EEEESTT
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCE-EEEECCc
Confidence 445667799999999999999999 8899999
No 178
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.61 E-value=2.3e-08 Score=83.10 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=27.0
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+..++.++.|++++++++...|++ ++||+|+
T Consensus 226 ~~~LSGGekQRvaIAraL~~~P~l-LlLDEPT 256 (607)
T 3bk7_A 226 LHQLSGGELQRVAIAAALLRKAHF-YFFDEPS 256 (607)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCSE-EEEECTT
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCE-EEEECCc
Confidence 344667799999999999999999 8899999
No 179
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.60 E-value=9.8e-09 Score=78.72 Aligned_cols=28 Identities=29% Similarity=0.277 Sum_probs=24.6
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 6 GKGPFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
...+.+++|.|++||||||+++.|+..+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 3456899999999999999999999765
No 180
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.57 E-value=5.1e-09 Score=85.99 Aligned_cols=106 Identities=17% Similarity=0.233 Sum_probs=58.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH-HHhcCCh-----hhHHHHHHhhcC--CCCCHHHHHHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR-EIASNSE-----YGTTILNTIKEG--KIVPSEVTVSLIQKEM 81 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~-~~~~~~~-----~~~~~~~~l~~~--~~~~~~~~~~~i~~~l 81 (196)
-+++|.|++||||||+++.|+ |....+.|.+... .+...++ ....+.+.+... ...... ..+.+.+
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~---Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~---~~~~~~l 386 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLA---GVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSN---FYKTELL 386 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHH---TSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCH---HHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHH---HHHHHHH
Confidence 488999999999999999999 7665555544210 0000000 000111111100 000001 1122222
Q ss_pred hcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 82 ESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 82 ~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
....-.. .-+..++.++.|++.+++++...|++ ++||+|+
T Consensus 387 ~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~l-LlLDEPt 429 (538)
T 1yqt_A 387 KPLGIIDLYDREVNELSGGELQRVAIAATLLRDADI-YLLDEPS 429 (538)
T ss_dssp TTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSE-EEEECTT
T ss_pred HHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCE-EEEeCCc
Confidence 2211111 11334666799999999999999999 7899999
No 181
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=98.48 E-value=1.6e-07 Score=69.19 Aligned_cols=39 Identities=23% Similarity=0.297 Sum_probs=34.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE 47 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~ 47 (196)
|++|+|+|++||||||+++.|.+.+|+.++..++.+++.
T Consensus 1 m~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~ 39 (241)
T 1dek_A 1 MKLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDA 39 (241)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHH
Confidence 378999999999999999999998999999888776554
No 182
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.47 E-value=7.8e-08 Score=73.72 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=31.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL 43 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~ 43 (196)
+.+|+|.||+||||||++..|++.++..+++.|.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 46899999999999999999999999888887654
No 183
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.47 E-value=9.9e-08 Score=73.61 Aligned_cols=35 Identities=23% Similarity=0.489 Sum_probs=31.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL 43 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~ 43 (196)
+++|+|.||+||||||++..|++.++..+++.|.+
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 36899999999999999999999999888888765
No 184
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=98.45 E-value=1.3e-07 Score=71.88 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=31.7
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHHHhCCceechhH
Q 029287 6 GKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGE 42 (196)
Q Consensus 6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~ 42 (196)
.+.+.+|+|.||+||||||++..|++.++..+++.|.
T Consensus 7 ~~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 7 ASLPKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CCCCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 3456789999999999999999999999988777653
No 185
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=98.43 E-value=6.3e-06 Score=61.65 Aligned_cols=146 Identities=9% Similarity=0.072 Sum_probs=83.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhC---CceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYG---LTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMES 83 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~ 83 (196)
..+.+|++.|.+||||+++.+.|.+.++ +.+...+ .+.. .+..+..+.++...
T Consensus 73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~----------~Pt~--------------eE~~~~ylwR~~~~ 128 (289)
T 3rhf_A 73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFK----------APTD--------------EEKSHDFLWRIEKQ 128 (289)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECC----------SCCH--------------HHHTSCTTHHHHTT
T ss_pred CCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECC----------CCCh--------------hhhcCCHHHHHHHh
Confidence 3578999999999999999999999984 2222210 0100 01111122222222
Q ss_pred --CCCCcEEEeCCCCC-------------------HHHHHHHHHHh--CCCCcEEEEeecChHHHHHHHhhccCCCC---
Q 029287 84 --SDSKKFLIDGFPRS-------------------EENRAAFERIM--GAEPDIVLFFDCPEEEMVNRVLNRNEGRV--- 137 (196)
Q Consensus 84 --~~~~~~iid~~~~~-------------------~~~~~~~~~~~--~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~--- 137 (196)
..+...|.|++.-+ ..+...|.+.+ ....-+-++|++|.++..+|+.+|..+-.
T Consensus 129 lP~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP~k~W 208 (289)
T 3rhf_A 129 VPAAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDPSKHW 208 (289)
T ss_dssp CCCTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCGGGGG
T ss_pred CCCCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCCcccc
Confidence 23455667764422 12223334332 22334448999999999999998842111
Q ss_pred CCcHHHHHHH--HHHHHhchHhHHHHHHh-cCcEEEEeCCCC
Q 029287 138 DDNIDTVRKR--LQVFKALNLPVINYYAR-RGKLYTINAVGT 176 (196)
Q Consensus 138 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~I~~~~~ 176 (196)
.-+...++++ ...|......++..-+. .++|++|+++..
T Consensus 209 K~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~VV~addK 250 (289)
T 3rhf_A 209 KYSRGDLAERAYWDDYMDAYSVAFEKTSTEIAPWHVVPANKK 250 (289)
T ss_dssp GCCHHHHHHHTTHHHHHHHHHHHHHHHCCSSSCEEEEECSSH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCCH
Confidence 1123344443 46666666656555443 478999998854
No 186
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.42 E-value=6.7e-08 Score=86.69 Aligned_cols=109 Identities=22% Similarity=0.316 Sum_probs=64.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCC-CCH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKI-VPS 70 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~-~~~ 70 (196)
-+++|.|++||||||+++.|. |....+.|.+ .++.+...++ ...++++++..+.. ..+
T Consensus 417 ~~~~ivG~sGsGKSTl~~ll~---g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~ 493 (1284)
T 3g5u_A 417 QTVALVGNSGCGKSTTVQLMQ---RLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTM 493 (1284)
T ss_dssp CEEEEECCSSSSHHHHHHHTT---TSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCH
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCH
Confidence 478999999999999999999 5443332222 2333332222 12256676665432 333
Q ss_pred HHHHHHHH-----HHHhc-CCC-CcEEE---eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 71 EVTVSLIQ-----KEMES-SDS-KKFLI---DGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 71 ~~~~~~i~-----~~l~~-~~~-~~~ii---d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
........ +.+.. ..+ +..+- ..++.+++|++++++++..+|++ ++||+|+
T Consensus 494 ~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~i-liLDEpt 554 (1284)
T 3g5u_A 494 DEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKI-LLLDEAT 554 (1284)
T ss_dssp HHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSE-EEEESTT
T ss_pred HHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCE-EEEECCC
Confidence 32222211 11111 111 11111 24666799999999999999998 7799998
No 187
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.39 E-value=6.9e-07 Score=68.16 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
.+.+++|.|++||||||+++.|+..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999765
No 188
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.38 E-value=1.1e-06 Score=68.41 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
.+.+++|.|++||||||+++.|+..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 46799999999999999999999776
No 189
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.29 E-value=4.4e-07 Score=63.90 Aligned_cols=26 Identities=38% Similarity=0.590 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGL 35 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~ 35 (196)
++++|+||+||||||+++.|+..+++
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47899999999999999999987753
No 190
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=98.29 E-value=4.5e-07 Score=69.07 Aligned_cols=35 Identities=14% Similarity=0.218 Sum_probs=30.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL 43 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~ 43 (196)
+.+|+|.||+||||||++..|++.++..+++.|..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 46888999999999999999999998877776543
No 191
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.27 E-value=7.5e-07 Score=67.55 Aligned_cols=30 Identities=33% Similarity=0.517 Sum_probs=26.5
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHHHhC
Q 029287 5 GGKGPFICFVLGGPGSGKGTQCAKIVKNYG 34 (196)
Q Consensus 5 ~~~~~~~i~i~G~~GsGKST~~~~L~~~~~ 34 (196)
..+.+++|+|.|++||||||+++.|++.++
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345679999999999999999999998874
No 192
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.23 E-value=4.3e-07 Score=81.55 Aligned_cols=109 Identities=21% Similarity=0.291 Sum_probs=64.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh----hhHHHHHHhhcCCC---C
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE----YGTTILNTIKEGKI---V 68 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~----~~~~~~~~l~~~~~---~ 68 (196)
-+++|.|++||||||+++.|. |+...+.|.+. ++.+...++ ...++++++..+.. .
T Consensus 1060 e~v~ivG~sGsGKSTl~~~l~---g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~ 1136 (1284)
T 3g5u_A 1060 QTLALVGSSGCGKSTVVQLLE---RFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVV 1136 (1284)
T ss_dssp SEEEEECSSSTTHHHHHHHHT---TSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCC
T ss_pred CEEEEECCCCCCHHHHHHHHh---cCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCC
Confidence 478999999999999999999 55444333321 111111111 12346677765432 2
Q ss_pred CHHHHHHHHHH-----HHhcCC-C-CcEEE---eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 69 PSEVTVSLIQK-----EMESSD-S-KKFLI---DGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 69 ~~~~~~~~i~~-----~l~~~~-~-~~~ii---d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
.+....+.... .+...+ + +..+- ..++.+++|++.+++++...|++ ++||+|+
T Consensus 1137 ~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~i-LiLDEpT 1199 (1284)
T 3g5u_A 1137 SYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHI-LLLDEAT 1199 (1284)
T ss_dssp CHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSS-EEEESCS
T ss_pred CHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCE-EEEeCCc
Confidence 33333322221 222111 1 22222 23666799999999999989998 7799998
No 193
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.20 E-value=6.8e-07 Score=77.59 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=27.5
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~ 122 (196)
+..++.++.|++.+++++...|++ ++||+|+
T Consensus 546 ~~~LSGGqkQRvaLArAL~~~P~l-LLLDEPT 576 (986)
T 2iw3_A 546 ISALSGGWKMKLALARAVLRNADI-LLLDEPT 576 (986)
T ss_dssp GGGCCHHHHHHHHHHHHHHTTCSE-EEEESTT
T ss_pred cccCCHHHHHHHHHHHHHhcCCCE-EEEECCc
Confidence 445777899999999999999999 8899999
No 194
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.17 E-value=5.2e-06 Score=63.36 Aligned_cols=27 Identities=41% Similarity=0.853 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
..+.+|+|+|++||||||++..|+..+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 356799999999999999999999776
No 195
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.13 E-value=5.1e-06 Score=64.01 Aligned_cols=27 Identities=33% Similarity=0.537 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
..+.+++|.||+||||||+++.|+..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999999766
No 196
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=98.12 E-value=1.7e-06 Score=68.11 Aligned_cols=34 Identities=12% Similarity=0.296 Sum_probs=29.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechhH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGE 42 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~ 42 (196)
+.+|+|.||+||||||++..|++.++..+++.|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 3578899999999999999999999988887654
No 197
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.11 E-value=4.3e-07 Score=65.57 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287 97 SEENRAAFERIMGAEPDIVLFFDCPEEE 124 (196)
Q Consensus 97 ~~~~~~~~~~~~~~~p~~~i~ld~~~~~ 124 (196)
++.|++.+++++...|++ ++||+|+..
T Consensus 108 Gq~qrv~lAraL~~~p~l-llLDEPts~ 134 (208)
T 3b85_A 108 VEVAPLAYMRGRTLNDAF-VILDEAQNT 134 (208)
T ss_dssp EEEEEGGGGTTCCBCSEE-EEECSGGGC
T ss_pred chHHHHHHHHHHhcCCCE-EEEeCCccc
Confidence 778889999999999998 889999854
No 198
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.10 E-value=2.6e-06 Score=64.71 Aligned_cols=34 Identities=32% Similarity=0.598 Sum_probs=28.6
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287 6 GKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS 39 (196)
Q Consensus 6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~ 39 (196)
.+.|..+.|.||||+|||++++.+++.+|..++.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~ 66 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIM 66 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 3456788889999999999999999999866544
No 199
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.10 E-value=1.7e-06 Score=62.19 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
-+++|.||+||||||++++|+..+
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 588999999999999999999665
No 200
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=98.10 E-value=1.8e-06 Score=70.21 Aligned_cols=35 Identities=3% Similarity=0.002 Sum_probs=29.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCC-------ceechhH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGL-------THLSAGE 42 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~-------~~i~~~~ 42 (196)
..++|+|+|++||||||+++.|++.++. .+++.|+
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 4589999999999999999999999986 4566554
No 201
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.08 E-value=1.9e-06 Score=62.61 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
..+++|.||+||||||++++|...+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578999999999999999999765
No 202
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.05 E-value=2.6e-06 Score=71.84 Aligned_cols=31 Identities=16% Similarity=0.326 Sum_probs=25.9
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCc--EEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPD--IVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~--~~i~ld~~~ 122 (196)
+..++.++.|++.+++++...|+ + ++||+|+
T Consensus 200 ~~~LSGGe~QRv~iArAL~~~p~~~l-LlLDEPt 232 (670)
T 3ux8_A 200 AGTLSGGEAQRIRLATQIGSRLTGVL-YVLDEPS 232 (670)
T ss_dssp GGGSCHHHHHHHHHHHHHHTCCCSCE-EEEECTT
T ss_pred cccCCHHHHHHHHHHHHHhhCCCCCE-EEEECCc
Confidence 34566779999999999877776 7 8899999
No 203
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.04 E-value=1.4e-06 Score=65.47 Aligned_cols=32 Identities=22% Similarity=0.254 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL 44 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~ 44 (196)
+.++|.|++||||||+.+.|. |....+.|.+.
T Consensus 3 f~v~lvG~nGaGKSTLln~L~---g~~~~~~G~i~ 34 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLF---KSQVSRKASSW 34 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHH---HHHC-------
T ss_pred eEEEEECCCCCCHHHHHHHHh---CCCCCCCCccc
Confidence 688999999999999999999 54444555443
No 204
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.03 E-value=3.4e-06 Score=58.18 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
-+++|.|++||||||+++.|+..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 589999999999999999999654
No 205
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.98 E-value=5.1e-06 Score=57.82 Aligned_cols=26 Identities=31% Similarity=0.170 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
.+.+++|.|++||||||++..|...+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999999876
No 206
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.95 E-value=6.6e-06 Score=57.60 Aligned_cols=26 Identities=19% Similarity=0.116 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
.+.+++|.|++||||||+++.|...+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 35688999999999999999999765
No 207
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.94 E-value=7.3e-06 Score=62.50 Aligned_cols=26 Identities=35% Similarity=0.471 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
.+.+++|.||+||||||+++.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999999776
No 208
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.93 E-value=6.1e-06 Score=61.57 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
-+++|.||+||||||+++.|...+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhC
Confidence 578999999999999999999654
No 209
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.92 E-value=6.4e-06 Score=61.92 Aligned_cols=27 Identities=26% Similarity=0.546 Sum_probs=23.6
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCcee
Q 029287 12 CFVLGGPGSGKGTQCAKIVKNYGLTHL 38 (196)
Q Consensus 12 i~i~G~~GsGKST~~~~L~~~~~~~~i 38 (196)
++|.|||||||||++++|+..++...+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i 73 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFI 73 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEE
Confidence 889999999999999999998865443
No 210
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.92 E-value=5.9e-06 Score=58.67 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
+++|.|++||||||+++.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68899999999999999999665
No 211
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.91 E-value=9.5e-06 Score=60.17 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=25.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCcee
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHL 38 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i 38 (196)
+.-++|.||||+||||+++.++..++..++
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~ 74 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFF 74 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEE
Confidence 445889999999999999999999875544
No 212
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.91 E-value=8.5e-06 Score=68.71 Aligned_cols=32 Identities=13% Similarity=0.257 Sum_probs=24.8
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCc--EEEEeecCh
Q 029287 91 IDGFPRSEENRAAFERIMGAEPD--IVLFFDCPE 122 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~--~~i~ld~~~ 122 (196)
...++.++.|++.+++++...|. -+++||+|+
T Consensus 541 ~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt 574 (670)
T 3ux8_A 541 ATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPT 574 (670)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTT
T ss_pred chhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCC
Confidence 34466679999999999876654 338899999
No 213
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.91 E-value=2.8e-06 Score=59.33 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
+.+++|.|++||||||+++.|...+
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3588999999999999999999876
No 214
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.90 E-value=6.5e-06 Score=57.72 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
...++|.||+||||||+++.++..+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999765
No 215
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.88 E-value=1.1e-05 Score=64.22 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=28.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS 39 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~ 39 (196)
+.|.-+.+.||||+|||+++++++..+|..++.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~ 245 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQTNATFLK 245 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence 446778899999999999999999999877654
No 216
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.88 E-value=7.2e-06 Score=60.30 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~ 30 (196)
-+++|.||+||||||+++.|+
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 588999999999999999888
No 217
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.87 E-value=1.2e-05 Score=63.93 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=28.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS 39 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~ 39 (196)
+.|.-+.+.||||+|||+++++++..+|..++.
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~ 236 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIR 236 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Confidence 345678899999999999999999999877654
No 218
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.86 E-value=9.4e-06 Score=57.74 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=25.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechh
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAG 41 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~ 41 (196)
..|+|+|++||||||++..|+++.+ ..++.|
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 5788999999999999999998855 555544
No 219
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.86 E-value=9.3e-06 Score=61.84 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
-+++|.||+||||||+++.|...+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 588999999999999999999776
No 220
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.85 E-value=1.4e-05 Score=63.82 Aligned_cols=33 Identities=24% Similarity=0.403 Sum_probs=28.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS 39 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~ 39 (196)
+.|.-+.|.||||+|||+++++++..+|..++.
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~ 245 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATIGANFIF 245 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 345778889999999999999999999877754
No 221
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.84 E-value=1.5e-05 Score=59.07 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=26.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS 39 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~ 39 (196)
.+.-+.|.||+|+||||+++.+++.++..++.
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~ 69 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLA 69 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 34567889999999999999999998866543
No 222
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.84 E-value=1.5e-05 Score=62.47 Aligned_cols=32 Identities=25% Similarity=0.199 Sum_probs=26.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS 39 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~ 39 (196)
...+++|.||+||||||+++.|+..++..++.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 34688999999999999999999888655444
No 223
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.83 E-value=1.3e-05 Score=60.96 Aligned_cols=37 Identities=27% Similarity=0.334 Sum_probs=29.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceec--hhHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS--AGELL 44 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~--~~~~~ 44 (196)
.+..+.|.||||+||||+++.++..++..++. ..++.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~ 86 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 86 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHH
Confidence 34578889999999999999999998766554 33444
No 224
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.83 E-value=8.9e-06 Score=59.04 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
-+++|.|||||||||+++.|+..
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58899999999999999999954
No 225
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.83 E-value=1.5e-05 Score=61.62 Aligned_cols=29 Identities=24% Similarity=0.220 Sum_probs=24.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCce
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTH 37 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~ 37 (196)
+..++|.|||||||||+++.++..++...
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 35688899999999999999999886543
No 226
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.81 E-value=1.4e-05 Score=62.93 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=28.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS 39 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~ 39 (196)
+.|.-+.+.||||+|||+++++++...+..++.
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~ 212 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHTDCKFIR 212 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhhCCCceE
Confidence 345668889999999999999999999887764
No 227
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.81 E-value=1.2e-05 Score=54.79 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
..++|.|++||||||+++.++..+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 467889999999999999999665
No 228
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.80 E-value=1.6e-05 Score=60.14 Aligned_cols=30 Identities=23% Similarity=0.351 Sum_probs=26.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCcee
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHL 38 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i 38 (196)
+..+.|.||||+||||+++.+++.++..++
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~~ 83 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSATFL 83 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence 457888999999999999999999876554
No 229
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.79 E-value=1.5e-05 Score=59.03 Aligned_cols=28 Identities=18% Similarity=0.358 Sum_probs=23.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcee
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYGLTHL 38 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i 38 (196)
-++|.|||||||||+++.++..++...+
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~~~~i 78 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEARVPFI 78 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3888999999999999999988764443
No 230
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.78 E-value=2e-05 Score=59.17 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=27.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS 39 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~ 39 (196)
.+.-+.|.||||+||||+++.+++.++..++.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~ 81 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNATFIR 81 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 34568889999999999999999999866543
No 231
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=97.76 E-value=0.00016 Score=54.82 Aligned_cols=160 Identities=15% Similarity=0.187 Sum_probs=82.7
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhC-CceechhHHHHHHHhcCC--------h-hhHHHHHHhhcCCCCCHH-------
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYG-LTHLSAGELLRREIASNS--------E-YGTTILNTIKEGKIVPSE------- 71 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~-~~~i~~~~~~~~~~~~~~--------~-~~~~~~~~l~~~~~~~~~------- 71 (196)
+..|+|.|| ||+|+.+.|.+.+. ..........| ....+. - ....+.+.+..|..+...
T Consensus 105 ~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR-~~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~~~~~g~~Y 180 (295)
T 1kjw_A 105 ARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTR-PKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLY 180 (295)
T ss_dssp CCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECS-CCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCEEEEECC---CHHHHHHHHHhhCccceeeeeeeccc-CCCCccccCceeEecCCHHHHHHHHHCCCcEEEEEEcCcEe
Confidence 356778898 79999999998763 11122111111 111110 0 233455666666554321
Q ss_pred -HHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 029287 72 -VTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQV 150 (196)
Q Consensus 72 -~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~ 150 (196)
.....+.+.+.. +..+|++--+.+..+. . .....| ++||+..|.....++|.+| . +.+.+++|+..
T Consensus 181 Gt~~~~V~~~~~~--G~~vildid~~g~~~l---~-~~~~~p-i~IfI~pps~~~L~~L~~R----~--t~~~i~~rl~~ 247 (295)
T 1kjw_A 181 GTSVQSVREVAEQ--GKHCILDVSANAVRRL---Q-AAHLHP-IAIFIRPRSLENVLEINKR----I--TEEQARKAFDR 247 (295)
T ss_dssp EEEHHHHHHHHHT--TCEEEECCCTTHHHHH---H-HTTCCC-EEEEECCSSHHHHHHHCTT----S--CHHHHHHHHHH
T ss_pred eeeHHHHHHHHhc--CCeEEEEeCHHHHHHH---H-hcccCC-eEEEEECCCHHHHHHHHhc----C--CHHHHHHHHHH
Confidence 123345555553 5667777543322211 1 123355 7788887754444457655 2 23455665554
Q ss_pred HHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287 151 FKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAAL 191 (196)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~ 191 (196)
.... -..+...... +|+++ ++++..+++..+|...
T Consensus 248 a~~~----e~~~~~~fd~-vivNd-~le~a~~~l~~ii~~~ 282 (295)
T 1kjw_A 248 ATKL----EQEFTECFSA-IVEGD-SFEEIYHKVKRVIEDL 282 (295)
T ss_dssp HHHH----HHHHGGGCSE-EECCS-SHHHHHHHHHHHHHHH
T ss_pred HHHH----HHhccccCeE-EEECc-CHHHHHHHHHHHHHhc
Confidence 4221 1112233333 34444 8999999988887653
No 232
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.76 E-value=1.2e-05 Score=62.27 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=25.7
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCce
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTH 37 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~ 37 (196)
...|+|.|++||||||+++.|++.+++.+
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 45688999999999999999999987666
No 233
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.75 E-value=2.1e-05 Score=63.50 Aligned_cols=27 Identities=33% Similarity=0.727 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
..+.+++|+|++||||||+++.|+..+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 345799999999999999999999765
No 234
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.75 E-value=1.3e-05 Score=61.11 Aligned_cols=33 Identities=24% Similarity=0.186 Sum_probs=24.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR 45 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~ 45 (196)
.+++|.|+|||||||+++.|. |....+.|.+..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~---g~~~~~~G~i~~ 202 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAIN---PGLKLRVSEVSE 202 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHS---TTCCCC------
T ss_pred CeEEEECCCCCcHHHHHHHhc---ccccccccceec
Confidence 478899999999999999999 887777776653
No 235
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.74 E-value=7.9e-06 Score=63.91 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYG 34 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~ 34 (196)
..++|+|++||||||+++.|+..+.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999996654
No 236
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.74 E-value=3.4e-05 Score=57.65 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=27.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS 39 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~ 39 (196)
..+..+.|.||+|+||||+++.+++..+..++.
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~ 94 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIK 94 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEE
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 345678889999999999999999998876544
No 237
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.73 E-value=2.1e-05 Score=61.31 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=27.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceech
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSA 40 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~ 40 (196)
+..+.|.||||+|||++++.|++.++..++..
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~~~~~~~ 82 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLDVPFTMA 82 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEe
Confidence 45678899999999999999999998776643
No 238
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.72 E-value=2.1e-05 Score=62.96 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=28.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS 39 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~ 39 (196)
+.|.-|.|.||||+|||+++++++..++..++.
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~ 273 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTDATFIR 273 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCCCeEE
Confidence 346778899999999999999999999877754
No 239
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.72 E-value=7.7e-06 Score=66.04 Aligned_cols=31 Identities=29% Similarity=0.334 Sum_probs=24.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL 43 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~ 43 (196)
-+++|.||+||||||++++|+ |+...+.|.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~---Gl~~p~~G~I 60 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFV---TALIPDLTLL 60 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHH---HHHCCCTTTC
T ss_pred ceEEEECCCCCcHHHHHHHHh---cCCCCCCCEE
Confidence 588999999999999999999 4444444433
No 240
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.72 E-value=2.1e-05 Score=55.63 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
.+.++|.|++||||||+++.|...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 378999999999999999999853
No 241
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.71 E-value=2.2e-05 Score=61.14 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
+++|+||+||||||+++.|...+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 88999999999999999998554
No 242
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.71 E-value=2.2e-05 Score=62.75 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=28.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechh
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAG 41 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~ 41 (196)
+.-|.+.||||+||||+++.|++.++..++..+
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~ 82 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence 456888999999999999999999988776543
No 243
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.71 E-value=2.4e-05 Score=58.78 Aligned_cols=28 Identities=18% Similarity=0.358 Sum_probs=23.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcee
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYGLTHL 38 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i 38 (196)
-++|.||+||||||+++.|+..++...+
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~~~~i 102 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEARVPFI 102 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred eEEEECCCcChHHHHHHHHHHHcCCCEE
Confidence 3889999999999999999988754443
No 244
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.70 E-value=3.3e-05 Score=61.26 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=28.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS 39 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~ 39 (196)
+.|.=|.|.||||+|||+++++++..++..++.
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~ 246 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQTSATFLR 246 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHhCCCEEE
Confidence 345678889999999999999999999877754
No 245
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.70 E-value=1.4e-05 Score=63.35 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=24.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceechh
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAG 41 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~ 41 (196)
..+++|.|++||||||+.++|. |....+.|
T Consensus 69 ~~~valvG~nGaGKSTLln~L~---Gl~~p~~G 98 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLR---GIGNEEEG 98 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH---TCCTTSTT
T ss_pred CeEEEEECCCCCcHHHHHHHHh---CCCCccCc
Confidence 3589999999999999999999 65444433
No 246
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.67 E-value=4.3e-05 Score=58.67 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=27.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceech
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSA 40 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~ 40 (196)
+.-+.|.||||+|||++++.+++..+..++..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~v 82 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANSTFFSV 82 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence 45688899999999999999999998766543
No 247
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.66 E-value=2.5e-05 Score=54.69 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
+.+|+|++||||||++.+|.--+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 78899999999999999998544
No 248
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.65 E-value=3.9e-05 Score=53.59 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
+..++|.|++|+||||+++.+++.+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 3457789999999999999999886
No 249
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.65 E-value=1.2e-05 Score=64.64 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
-+++|.|++||||||++++|+..
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 47888999999999999999943
No 250
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.65 E-value=2.5e-05 Score=60.73 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=25.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCce-echhHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTH-LSAGELL 44 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~-i~~~~~~ 44 (196)
.+++|.|+|||||||+++.|. |... ...|.+.
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~---g~~~~~~~G~I~ 248 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALL---GLQNEILTNDVS 248 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHH---CCSSCCCCC---
T ss_pred CEEEEECCCCccHHHHHHHHh---ccccccccCCcc
Confidence 478999999999999999999 7766 6666654
No 251
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.64 E-value=2.6e-05 Score=59.88 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
..+++|+|++||||||+++.|...
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 468899999999999999999954
No 252
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.64 E-value=3.9e-05 Score=60.15 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
.-+++|.||+||||||+++.|...+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578999999999999999999654
No 253
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.62 E-value=3.9e-05 Score=55.58 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
-+++|.|++||||||+++.|+..+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 578889999999999999999553
No 254
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.62 E-value=4.2e-05 Score=57.98 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=25.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCcee
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHL 38 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i 38 (196)
+.-+.|.||+|+||||+++.+++.++..++
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~ 79 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFI 79 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 456778999999999999999999876554
No 255
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.61 E-value=4.9e-05 Score=57.69 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
.+..+.|.||||+||||+++.+++.+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34568889999999999999999887
No 256
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.61 E-value=2.5e-05 Score=61.04 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
.+++|.|++||||||+++.|...+
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 478889999999999999999544
No 257
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.61 E-value=4.6e-05 Score=58.54 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=25.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHh-CCcee
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNY-GLTHL 38 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~-~~~~i 38 (196)
+.-+.|.||||+|||++++.+++.+ +..++
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~ 75 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEANNSTFF 75 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTSCEEE
T ss_pred CceEEEECCCCccHHHHHHHHHHHcCCCcEE
Confidence 4678889999999999999999988 54443
No 258
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.61 E-value=4.1e-05 Score=58.14 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
.+.++++.|++||||||++..|+..+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999765
No 259
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.60 E-value=1.9e-05 Score=58.78 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=24.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLS 39 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~ 39 (196)
.-+.|.||+|+||||+++.+++.++..++.
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~~~~~~~ 74 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEAHVPFFS 74 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHHTCCCCC
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 346789999999999999999998765543
No 260
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.60 E-value=4.4e-05 Score=59.82 Aligned_cols=31 Identities=19% Similarity=0.271 Sum_probs=26.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLS 39 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~ 39 (196)
+..+.|.||+|+||||+++.|++.++..++.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~ 102 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAI 102 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 3467789999999999999999999766544
No 261
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.59 E-value=4.4e-05 Score=53.49 Aligned_cols=31 Identities=19% Similarity=0.153 Sum_probs=23.6
Q ss_pred CcccCCCCceEEEEEcCCCCChHHHHHHHHH
Q 029287 1 MQVKGGKGPFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 1 m~~~~~~~~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
|.......++.|+|.|.+||||||+++.|..
T Consensus 3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp ---CCCSEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcccccceeEEEEEECCCCCCHHHHHHHHhc
Confidence 4333344568899999999999999999985
No 262
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.59 E-value=4.4e-05 Score=60.70 Aligned_cols=24 Identities=33% Similarity=0.335 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
-+++|+||+||||||+++.|...+
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhhc
Confidence 478899999999999999999876
No 263
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.59 E-value=5e-05 Score=55.19 Aligned_cols=26 Identities=12% Similarity=0.073 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhC
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYG 34 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~ 34 (196)
+..++|.||+|+||||+++.+++.++
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45778899999999999999998763
No 264
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.58 E-value=5.7e-05 Score=58.42 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
...+++|+|+|||||||+++.|...+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 34789999999999999999998654
No 265
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.57 E-value=5.3e-05 Score=53.94 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
..+.|.|++|+||||+++.++..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 577889999999999999999876
No 266
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.57 E-value=5.3e-05 Score=54.45 Aligned_cols=27 Identities=15% Similarity=0.115 Sum_probs=22.8
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHHH
Q 029287 6 GKGPFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 6 ~~~~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
....+.|++.|++||||||++..|...
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345678899999999999999999864
No 267
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.56 E-value=1.9e-05 Score=60.96 Aligned_cols=80 Identities=18% Similarity=0.176 Sum_probs=47.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF 89 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~ 89 (196)
.+++|.|++||||||+++.|...+ ..+.+.+.... ..+. . .+ ......-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~---~~~~g~i~i~~---~~e~--------~----~~-------------~~~~~i~ 220 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI---PKEERIISIED---TEEI--------V----FK-------------HHKNYTQ 220 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS---CTTSCEEEEES---SCCC--------C----CS-------------SCSSEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---cCCCcEEEECC---eecc--------c----cc-------------cchhEEE
Confidence 378899999999999999999443 22222221100 0000 0 00 0001111
Q ss_pred EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 90 LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 90 iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
++.+ .++.|+..++.++...|++ ++||+|..
T Consensus 221 ~~~g--gg~~~r~~la~aL~~~p~i-lildE~~~ 251 (330)
T 2pt7_A 221 LFFG--GNITSADCLKSCLRMRPDR-IILGELRS 251 (330)
T ss_dssp EECB--TTBCHHHHHHHHTTSCCSE-EEECCCCS
T ss_pred EEeC--CChhHHHHHHHHhhhCCCE-EEEcCCCh
Confidence 1211 4667899999999999999 77999874
No 268
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.56 E-value=5.4e-05 Score=58.94 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=26.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceech
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSA 40 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~ 40 (196)
+.-+.|.||+|+|||++++.+++.++..++..
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v 115 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSV 115 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 34578899999999999999999998766543
No 269
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.55 E-value=5.1e-05 Score=53.84 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
.+.++|.|++||||||+++.|...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 478999999999999999999943
No 270
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.55 E-value=4.5e-05 Score=53.10 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
+..+.|.|++|+||||+++.+++.+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 3456889999999999999999886
No 271
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.55 E-value=6.1e-05 Score=58.68 Aligned_cols=32 Identities=31% Similarity=0.406 Sum_probs=27.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS 39 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~ 39 (196)
.+.-+.|.|++|+||||+++.+++.++..++.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~ 147 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFS 147 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 35678889999999999999999998866543
No 272
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.54 E-value=6.7e-05 Score=51.95 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=23.1
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHHH
Q 029287 6 GKGPFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 6 ~~~~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
+...+.|++.|.+||||||+.+.|...
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 345688999999999999999999854
No 273
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.54 E-value=0.00018 Score=58.90 Aligned_cols=94 Identities=14% Similarity=0.144 Sum_probs=52.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh---CC--ceechhHHHHHHHhcCChhhHHHHHHh-hcCCCCCHHHHHHHHHHHHhc
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY---GL--THLSAGELLRREIASNSEYGTTILNTI-KEGKIVPSEVTVSLIQKEMES 83 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~---~~--~~i~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~i~~~l~~ 83 (196)
-+++|.|++||||||+++.++... |- ..+...+ ....+.... ..+. .. .+....
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee-----------~~~~l~~~~~~~g~--~~-------~~~~~~ 341 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENACANKERAILFAYEE-----------SRAQLLRNAYSWGM--DF-------EEMERQ 341 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSS-----------CHHHHHHHHHTTSC--CH-------HHHHHT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeC-----------CHHHHHHHHHHcCC--CH-------HHHHhC
Confidence 478899999999999999998553 21 1121111 011111111 1111 10 111111
Q ss_pred CCCCcEEEeCC----CCCHHHHHHHHHHhCCCCcEEEEeecChHHHHH
Q 029287 84 SDSKKFLIDGF----PRSEENRAAFERIMGAEPDIVLFFDCPEEEMVN 127 (196)
Q Consensus 84 ~~~~~~iid~~----~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~ 127 (196)
+...+.+.. +.++.++..++.++...|++ +++| |...+..
T Consensus 342 --g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~l-lilD-p~~~Ld~ 385 (525)
T 1tf7_A 342 --NLLKIVCAYPESAGLEDHLQIIKSEINDFKPAR-IAID-SLSALAR 385 (525)
T ss_dssp --TSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSE-EEEE-CHHHHTS
T ss_pred --CCEEEEEeccccCCHHHHHHHHHHHHHhhCCCE-EEEc-ChHHHHh
Confidence 112233433 34577888888888889998 7799 8876543
No 274
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.53 E-value=8.6e-05 Score=59.98 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=26.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS 39 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~ 39 (196)
.|.-++|.||||+||||+++.++...+..++.
T Consensus 48 ~p~gvLL~GppGtGKT~Laraia~~~~~~f~~ 79 (476)
T 2ce7_A 48 MPKGILLVGPPGTGKTLLARAVAGEANVPFFH 79 (476)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 34458899999999999999999998876654
No 275
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.53 E-value=7.4e-05 Score=54.10 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhC
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYG 34 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~ 34 (196)
+..++|.|++|+||||+++.+++.++
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34788899999999999999998874
No 276
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.52 E-value=5.4e-05 Score=60.19 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 029287 11 ICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~ 30 (196)
.++|+|++||||||+++.|.
T Consensus 44 ~vaLvG~nGaGKSTLln~L~ 63 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLF 63 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 39999999999999999999
No 277
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.51 E-value=7.7e-05 Score=61.00 Aligned_cols=31 Identities=26% Similarity=0.392 Sum_probs=27.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLS 39 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~ 39 (196)
+..+.|.||+|+||||+++.+++.+|..++.
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~ 107 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILE 107 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 4578889999999999999999999877654
No 278
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.51 E-value=7.8e-05 Score=57.92 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
..+++|+|+|||||||+.+.|...+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999999654
No 279
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.50 E-value=6.9e-05 Score=53.59 Aligned_cols=27 Identities=11% Similarity=-0.005 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCc
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLT 36 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~ 36 (196)
..+++.||||+||||++..|++.++-.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~ 85 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGA 85 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 458889999999999999999887533
No 280
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.50 E-value=8.8e-05 Score=57.10 Aligned_cols=31 Identities=19% Similarity=0.066 Sum_probs=26.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLS 39 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~ 39 (196)
+..+.|.|++|+||||+++.+++.++..++.
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~~ 85 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSANIKT 85 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 3457889999999999999999998766544
No 281
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.50 E-value=6.1e-05 Score=54.16 Aligned_cols=22 Identities=27% Similarity=0.187 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~ 31 (196)
-+++|.|++||||||++..|+.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5888999999999999999985
No 282
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.49 E-value=6.9e-05 Score=51.92 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=22.0
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHHH
Q 029287 6 GKGPFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 6 ~~~~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
....+.|++.|++||||||+++.|...
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhC
Confidence 345688999999999999999998843
No 283
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.49 E-value=8.8e-05 Score=56.94 Aligned_cols=27 Identities=33% Similarity=0.477 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
..+.+|+++|++||||||++..|+..+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999999776
No 284
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.48 E-value=7.4e-05 Score=51.34 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~ 30 (196)
...++|.|++|+||||+.+.|.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 3689999999999999999998
No 285
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.48 E-value=8e-05 Score=59.40 Aligned_cols=26 Identities=42% Similarity=0.655 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
.+.+|++.|++||||||++..|+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999999776
No 286
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.48 E-value=6.9e-05 Score=56.71 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
-+++|.|+|||||||+++.|+..+
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 478899999999999999998765
No 287
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=97.48 E-value=7.4e-05 Score=51.90 Aligned_cols=30 Identities=13% Similarity=0.265 Sum_probs=24.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceech
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSA 40 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~ 40 (196)
.-++|.|+||+||||++..|.+. |...++-
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r-G~~lvaD 46 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR-GHQLVCD 46 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT-TCEEEES
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc-CCeEecC
Confidence 45788999999999999999986 7665543
No 288
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.47 E-value=9.5e-05 Score=51.85 Aligned_cols=26 Identities=12% Similarity=0.046 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHH
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
...+.|+|.|.+||||||+++.|...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence 44578899999999999999999843
No 289
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.47 E-value=8.5e-05 Score=50.53 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~ 31 (196)
-+.+|.||+||||||+..+|.=
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4778899999999999999873
No 290
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.47 E-value=6.7e-05 Score=54.81 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
-+++|.|++||||||++..|+..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 58889999999999999999964
No 291
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.47 E-value=1.5e-05 Score=60.77 Aligned_cols=32 Identities=22% Similarity=0.201 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL 44 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~ 44 (196)
.+++|.|+|||||||+++.|. |......|++.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~---g~~~~~~G~I~ 205 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAIS---PELGLRTNEIS 205 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHC---C----------
T ss_pred CEEEEECCCCCCHHHHHHHhc---cccccccccee
Confidence 488999999999999999999 76655555554
No 292
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.46 E-value=0.00012 Score=55.62 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
..++|.||+|+||||+++.+++.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 478889999999999999999986
No 293
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.46 E-value=2.5e-06 Score=62.27 Aligned_cols=31 Identities=29% Similarity=0.299 Sum_probs=23.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCceechhHHH
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL 44 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~ 44 (196)
+++|.||+||||||++++|+ +....+.|++.
T Consensus 29 ~~~i~GpnGsGKSTll~~i~---g~~~~~~G~i~ 59 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFV---TALIPDLTLLH 59 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHH---HHHSCCTTTC-
T ss_pred EEEEECCCCCCHHHHHHHHh---cccccCCCeEE
Confidence 45789999999999999999 54444555443
No 294
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.46 E-value=8e-05 Score=53.20 Aligned_cols=23 Identities=35% Similarity=0.673 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~ 30 (196)
.||+++++|++|||||+.+..+.
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~ 26 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMM 26 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred ceeEEEEEeCCCCCHHHHHHHHH
Confidence 46899999999999999987764
No 295
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.44 E-value=8.5e-05 Score=57.48 Aligned_cols=25 Identities=28% Similarity=0.623 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
.+. ++|.||+|+||||+++.|++.+
T Consensus 36 ~~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 36 LPH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred CCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 345 8889999999999999999864
No 296
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.43 E-value=9.5e-05 Score=52.01 Aligned_cols=24 Identities=17% Similarity=0.183 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~ 30 (196)
...+.|+|.|.+||||||+.+.|.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 356789999999999999999998
No 297
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.43 E-value=4.1e-05 Score=63.81 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcee-chhHHH
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYGLTHL-SAGELL 44 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i-~~~~~~ 44 (196)
.++|+|++||||||++++|+ |+... +.|.+.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~---Gl~~P~~sG~vt 78 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALS---GVALPRGSGIVT 78 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHH---SCC-------CC
T ss_pred eEEEECCCCChHHHHHHHHh---CCCCCCCCCeEE
Confidence 48999999999999999999 87544 455543
No 298
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.43 E-value=0.00012 Score=51.17 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
.++.|+|.|++|+||||+.+.|..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 347899999999999999999984
No 299
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.43 E-value=9.6e-05 Score=50.46 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
..+.|++.|++||||||+++.|...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 4578999999999999999999853
No 300
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.42 E-value=0.00013 Score=58.67 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=25.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhC--Ccee
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYG--LTHL 38 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~--~~~i 38 (196)
+.-+.+.||||+|||++++.+++.++ ..++
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~~~~~~~ 94 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELGSKVPFC 94 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHCTTSCEE
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhCCCceEE
Confidence 35678899999999999999999997 5444
No 301
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.42 E-value=0.00011 Score=56.34 Aligned_cols=35 Identities=23% Similarity=0.241 Sum_probs=26.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHh---CCc--eechhHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNY---GLT--HLSAGEL 43 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~---~~~--~i~~~~~ 43 (196)
+..++|.||+|+||||+++.+++.+ +.. .++..++
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 3467789999999999999999877 443 4454444
No 302
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.42 E-value=9.3e-05 Score=49.95 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
.-+.|.|++|+|||++++.+.+..
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 456789999999999999999764
No 303
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.41 E-value=8.5e-05 Score=56.56 Aligned_cols=23 Identities=30% Similarity=0.691 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
.+++|.|+|||||||+++.|. ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 578999999999999999999 54
No 304
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.40 E-value=0.00013 Score=58.32 Aligned_cols=26 Identities=38% Similarity=0.629 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
+|.+|++.|++||||||++..|+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 47899999999999999999999876
No 305
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.39 E-value=0.00013 Score=51.55 Aligned_cols=26 Identities=15% Similarity=0.342 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHH
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
...+.|+|.|.+|+||||+++.|...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 45588999999999999999999853
No 306
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.39 E-value=0.00011 Score=50.96 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
...|+|.|.+|+||||+.+.|..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46889999999999999999984
No 307
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.39 E-value=0.00011 Score=62.89 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=29.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhCCceech
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSA 40 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~ 40 (196)
+.|.-|.|.||||+|||++++.++..+|..++..
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v 269 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEE
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEE
Confidence 4567788999999999999999999998777643
No 308
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.39 E-value=0.00013 Score=57.38 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=26.7
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLS 39 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~ 39 (196)
+.-++|.|++|+|||++++.+++.++..++.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~ 178 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFN 178 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEE
Confidence 4578889999999999999999998876654
No 309
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.39 E-value=7.4e-05 Score=52.40 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=20.3
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCC
Q 029287 12 CFVLGGPGSGKGTQCAKIVKNYGL 35 (196)
Q Consensus 12 i~i~G~~GsGKST~~~~L~~~~~~ 35 (196)
+.|+|++||||||++..|+.. |.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~ 24 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-AP 24 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CS
T ss_pred EEEECCCCCcHHHHHHHHHhc-CC
Confidence 678999999999999999966 54
No 310
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.39 E-value=5.5e-05 Score=54.00 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~ 30 (196)
....++|.|++||||||+.+.|.
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 34789999999999999999988
No 311
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.39 E-value=0.00014 Score=59.89 Aligned_cols=29 Identities=31% Similarity=0.421 Sum_probs=24.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCce
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTH 37 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~ 37 (196)
...++|.||||+||||+++.++..++...
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 136 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLGRKF 136 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence 34788899999999999999999886544
No 312
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.38 E-value=5.1e-05 Score=58.91 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
-+++|+|++||||||+++.|+...
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999665
No 313
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.38 E-value=5e-05 Score=60.76 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
-+++|.|++||||||+++.|+...
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 478999999999999999999665
No 314
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.38 E-value=0.00011 Score=50.87 Aligned_cols=24 Identities=21% Similarity=0.445 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~ 30 (196)
...+.|++.|.+||||||+++.|.
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHh
Confidence 455889999999999999999987
No 315
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.37 E-value=0.00012 Score=52.31 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
.+.|.|++|+||||+++.+++.+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 37889999999999999999875
No 316
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.37 E-value=0.00017 Score=58.61 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=24.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCcee
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHL 38 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i 38 (196)
+.-++|.||||+||||++++++...+..++
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~~~~~i 93 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEARVPFI 93 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTCCEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 344889999999999999999998765544
No 317
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.37 E-value=2.5e-05 Score=68.00 Aligned_cols=32 Identities=16% Similarity=0.342 Sum_probs=27.8
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287 91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123 (196)
Q Consensus 91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~ 123 (196)
+..++.++.|++.+++++...|++ ++||+|+.
T Consensus 899 ~~~LSGGQkQRVaLArAL~~~P~L-LLLDEPT~ 930 (986)
T 2iw3_A 899 IRGLSGGQKVKLVLAAGTWQRPHL-IVLDEPTN 930 (986)
T ss_dssp GGGCCHHHHHHHHHHHHHTTCCSE-EEEECGGG
T ss_pred ccccCHHHHHHHHHHHHHHhCCCE-EEEECCcc
Confidence 345777899999999999999999 78999993
No 318
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.36 E-value=0.00014 Score=58.36 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=26.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHh-CCce--echhHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNY-GLTH--LSAGELL 44 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~-~~~~--i~~~~~~ 44 (196)
+.-+.|.||||+|||++++.++..+ +..+ ++..++.
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 4578889999999999999999998 5444 3444443
No 319
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.35 E-value=0.0001 Score=55.31 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
-+++|.|++||||||++..++...
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 478899999999999999998643
No 320
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.35 E-value=0.00013 Score=51.84 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=22.3
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHHH
Q 029287 6 GKGPFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 6 ~~~~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
....+.|+|.|.+||||||+++.|...
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcC
Confidence 345688999999999999999999854
No 321
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.35 E-value=0.00016 Score=52.00 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
..+.++|.|.+||||||++..|...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45788999999999999999999775
No 322
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.34 E-value=0.00016 Score=48.98 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
+.|++.|++||||||+++.|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57888999999999999999854
No 323
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.34 E-value=0.00014 Score=53.26 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~ 30 (196)
..+.|+|+|.+|+||||+++.|.
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~ 50 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSIL 50 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHc
Confidence 45889999999999999999999
No 324
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.33 E-value=0.00016 Score=55.87 Aligned_cols=22 Identities=23% Similarity=0.545 Sum_probs=20.5
Q ss_pred EEEEcCCCCChHHHHHHHHHHh
Q 029287 12 CFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 12 i~i~G~~GsGKST~~~~L~~~~ 33 (196)
+++.||+|+||||+++.+++.+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7889999999999999999875
No 325
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.33 E-value=0.00017 Score=56.07 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
++.++|+|+|++|+||||++..|+..+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999998776
No 326
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.33 E-value=0.0002 Score=49.07 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHH
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
+..+.|++.|.+||||||+...|..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4568899999999999999999974
No 327
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.33 E-value=0.00016 Score=56.21 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
.+..++|.|++|+||||+++.+++.+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34578889999999999999999877
No 328
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.32 E-value=0.00013 Score=50.39 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
..+.|++.|++||||||+.+.|..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Confidence 457899999999999999999984
No 329
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.32 E-value=0.00014 Score=50.19 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~ 31 (196)
+.|++.|.+||||||+++.|..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 6899999999999999999984
No 330
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.32 E-value=0.00014 Score=50.98 Aligned_cols=24 Identities=25% Similarity=0.529 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
++.|++.|.+||||||++..|...
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcC
Confidence 378999999999999999999853
No 331
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.31 E-value=0.00014 Score=50.70 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
..+.|++.|++||||||+.+.|...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 4678999999999999999999843
No 332
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.31 E-value=0.00013 Score=51.02 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~ 31 (196)
+.|+|.|++||||||+++.|..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5789999999999999999983
No 333
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.30 E-value=0.00017 Score=57.92 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=25.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLS 39 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~ 39 (196)
..++|.||||+||||+++.+++.++..++.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~ 80 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVER 80 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence 357789999999999999999998766544
No 334
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.30 E-value=0.00013 Score=55.52 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~ 30 (196)
.+.|+|.|++||||||+.+.|.
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~ 39 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLF 39 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHh
Confidence 4788999999999999999988
No 335
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.30 E-value=8.5e-05 Score=60.59 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
..++|.||+||||||++++|...+
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999999554
No 336
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.30 E-value=0.00021 Score=51.65 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
.++.|+|.|.+||||||++..|....
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45788999999999999999999774
No 337
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.30 E-value=0.00016 Score=55.23 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=24.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcee
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHL 38 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i 38 (196)
..++|.|++|+||||+++.+++.++..++
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 46778999999999999999998876553
No 338
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.30 E-value=0.00016 Score=56.22 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGL 35 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~ 35 (196)
..+.|.||||+||||+++.+++.++.
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57888999999999999999999863
No 339
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.30 E-value=0.00013 Score=51.31 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
..+.|++.|.+|+||||+.+.|...
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4478999999999999999999854
No 340
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.29 E-value=0.00017 Score=48.99 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
++.|++.|++||||||+...|...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 478999999999999999998843
No 341
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.00018 Score=50.53 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHH
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
...+.|++.|++||||||++..|...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34578899999999999999999843
No 342
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.28 E-value=0.00018 Score=48.81 Aligned_cols=24 Identities=25% Similarity=0.529 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
++.|++.|.+||||||+++.|...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Confidence 367899999999999999999854
No 343
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.28 E-value=0.00018 Score=49.21 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
..+.|++.|.+||||||+.+.|..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 357889999999999999999983
No 344
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.28 E-value=0.00019 Score=49.32 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~ 30 (196)
..+.|+|.|.+|+||||+.+.|.
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEEECCCCccHHHHHHHHh
Confidence 35789999999999999999998
No 345
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.28 E-value=0.00014 Score=57.86 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~ 30 (196)
+.|+|.|++||||||+++.|.
T Consensus 32 f~I~lvG~sGaGKSTLln~L~ 52 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLF 52 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHT
T ss_pred EEEEEECCCCCcHHHHHHHHh
Confidence 678999999999999999999
No 346
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.27 E-value=0.00024 Score=48.98 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHH
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
..++.|++.|.+||||||+.+.|..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3567889999999999999999983
No 347
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.27 E-value=0.0002 Score=49.98 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHH
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
...+.|++.|++|+||||+.+.|..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 4568899999999999999999983
No 348
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.27 E-value=0.00025 Score=55.36 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
.+..+.|.||+|+||||+++.+++.+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 34578889999999999999999876
No 349
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.27 E-value=0.00014 Score=56.47 Aligned_cols=24 Identities=29% Similarity=0.256 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
.++.|.|++||||||++..|+...
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 588999999999999999999765
No 350
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.27 E-value=0.00019 Score=48.82 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
++.|++.|.+||||||+++.|...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 478999999999999999999853
No 351
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.27 E-value=0.00019 Score=49.94 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHH
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
...+.|+|.|.+||||||+++.|...
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 34578999999999999999999843
No 352
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.26 E-value=0.00015 Score=62.33 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=26.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS 39 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~ 39 (196)
.+..++|.|||||||||+++.|+..++..++.
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~ 268 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFL 268 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTTTCEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCCcEEE
Confidence 34578889999999999999999988765543
No 353
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.25 E-value=0.0002 Score=48.97 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~ 30 (196)
.+.|++.|.+||||||+++.|.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999999997
No 354
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.25 E-value=0.00025 Score=53.81 Aligned_cols=26 Identities=38% Similarity=0.562 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
.+.+++++|++||||||++..|+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45788899999999999999999776
No 355
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.25 E-value=0.00022 Score=50.21 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
.+++++|++||||||++..++..+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 478889999999999986666554
No 356
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.25 E-value=0.00018 Score=56.08 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
.+..++|.||+|+||||+++.+++.+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 34577889999999999999999887
No 357
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.25 E-value=0.00019 Score=54.89 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=26.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS 39 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~ 39 (196)
.+..+.+.||+|+||||+++.+++.++..++.
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~ 78 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHDVNADMMF 78 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHHTTEEEEE
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEE
Confidence 34567778889999999999999998765543
No 358
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.25 E-value=0.00023 Score=49.98 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
..+.|+|.|.+|+||||+.+.|...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3478999999999999999999853
No 359
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.24 E-value=0.00024 Score=57.63 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=26.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS 39 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~ 39 (196)
.+.-+.|.|+||+|||++++.++..++..++.
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~ 268 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFL 268 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHCSSEEEE
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence 34568889999999999999999998866654
No 360
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.24 E-value=0.00026 Score=48.87 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
..+.|++.|.+||||||+++.|..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999999983
No 361
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.24 E-value=0.0002 Score=52.27 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
-+++|.|+|||||||++..++..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47888999999999998877654
No 362
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.23 E-value=0.00016 Score=51.22 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~ 30 (196)
..+.|+|.|.+|+||||+.+.|.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 44789999999999999999986
No 363
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.23 E-value=0.00022 Score=48.53 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
.+.|++.|.+||||||+.+.|..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 46889999999999999999985
No 364
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.23 E-value=0.00033 Score=49.29 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
..+.|+|.|++||||||+.+.|...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4688999999999999999999864
No 365
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.22 E-value=0.00027 Score=49.48 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
..+.|+|.|.+|+||||+.+.|...
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3478999999999999999999843
No 366
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.22 E-value=0.00016 Score=50.22 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~ 30 (196)
...+.|++.|++||||||+...|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 467899999999999999999887
No 367
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.22 E-value=0.00031 Score=54.81 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
.++|.||+|+||||+++.+++.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 78889999999999999999887
No 368
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.22 E-value=0.00015 Score=50.87 Aligned_cols=26 Identities=27% Similarity=0.102 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
..+.|+|.|.+|+||||+++.|...+
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhc
Confidence 44789999999999999998888654
No 369
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.21 E-value=0.00028 Score=49.64 Aligned_cols=25 Identities=28% Similarity=0.512 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHH
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
...+.|+|.|.+||||||+.+.|..
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHc
Confidence 3468899999999999999999985
No 370
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.21 E-value=0.00019 Score=56.10 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHHHhC------CCCcEEEEeecChH
Q 029287 94 FPRSEENRAAFERIMG------AEPDIVLFFDCPEE 123 (196)
Q Consensus 94 ~~~~~~~~~~~~~~~~------~~p~~~i~ld~~~~ 123 (196)
++.++.|++.++.++. ..|++ ++||+|+.
T Consensus 280 LSgGe~qr~~la~al~~~~~~~~~p~~-lllDEpt~ 314 (365)
T 3qf7_A 280 LSGGERALISISLAMSLAEVASGRLDA-FFIDEGFS 314 (365)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTTCCE-EEEESCCT
T ss_pred CCHHHHHHHHHHHHHHhhhcccCCCCE-EEEeCCCc
Confidence 5566889999887765 68998 78999993
No 371
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.20 E-value=0.00023 Score=48.70 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
..+.|++.|.+||||||+.+.|...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4578999999999999999999843
No 372
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.20 E-value=0.00032 Score=49.06 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
..+.|+|.|.+||||||+++.+..
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 347999999999999999988774
No 373
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.20 E-value=0.00028 Score=54.60 Aligned_cols=27 Identities=26% Similarity=0.208 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
....+++|.|++||||||++..|+..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 345789999999999999999998654
No 374
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.20 E-value=0.00025 Score=50.70 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
+-+.+|.|++||||||+..+|.=-+
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3577889999999999999987443
No 375
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.19 E-value=0.00034 Score=49.08 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
.+.|+|.|.+|+||||+++.|...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 478999999999999999999843
No 376
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.18 E-value=0.00029 Score=49.85 Aligned_cols=25 Identities=16% Similarity=0.310 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
..+.|+|.|.+||||||+...|...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3478999999999999999999843
No 377
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.18 E-value=0.00021 Score=57.09 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
.+.+|++.|++||||||++..|+..+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999876
No 378
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.17 E-value=0.00024 Score=54.79 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.8
Q ss_pred EEEEcCCCCChHHHHHHHHHHhC
Q 029287 12 CFVLGGPGSGKGTQCAKIVKNYG 34 (196)
Q Consensus 12 i~i~G~~GsGKST~~~~L~~~~~ 34 (196)
+.|.||+|+||||+++.+++.++
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78899999999999999998753
No 379
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.17 E-value=0.00026 Score=48.36 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
++.|++.|++||||||+++.|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 47889999999999999999984
No 380
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.17 E-value=0.00024 Score=48.45 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~ 30 (196)
.+.|++.|.+|+||||+.+.|.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHC
T ss_pred eEEEEEECCCCCCHHHHHHHHc
Confidence 3678999999999999999887
No 381
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.17 E-value=0.00027 Score=50.48 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
..+.|+|.|.+||||||+++.|...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4478999999999999999999854
No 382
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.17 E-value=0.00018 Score=55.19 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=23.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCce
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYGLTH 37 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~~~~ 37 (196)
-+.|.|+||+|||++++.+++.++..+
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~~~~ 74 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMDLDF 74 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTCCE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 467799999999999999999887554
No 383
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.16 E-value=0.00027 Score=50.05 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
..+.|+|.|.+|+||||+++.|...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 4578999999999999999999854
No 384
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.16 E-value=0.00028 Score=48.97 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
.+.|++.|.+||||||+++.|...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 478999999999999999999853
No 385
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.16 E-value=0.00027 Score=48.18 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
++.|++.|++||||||+.+.|...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 467899999999999999999843
No 386
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.16 E-value=0.00035 Score=48.49 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
..+.|+|.|.+||||||+++.|...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3478899999999999999999854
No 387
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.15 E-value=0.0003 Score=49.98 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHH
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
...+.|+|.|.+|+||||+...|..
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc
Confidence 4457899999999999999999984
No 388
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.15 E-value=0.00027 Score=52.81 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~ 30 (196)
.+.|+|.|++||||||+.+.|.
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~ 24 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALT 24 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999998
No 389
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.15 E-value=0.0003 Score=49.09 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHH
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
.....|++.|++|+||||+.+.|...
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999999854
No 390
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.15 E-value=0.00052 Score=50.67 Aligned_cols=30 Identities=27% Similarity=0.416 Sum_probs=25.3
Q ss_pred cCCCCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 4 KGGKGPFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 4 ~~~~~~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
.++.+..++++.|..||||||++..|+..+
T Consensus 9 ~~~~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 9 HHGMASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CTTCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCcceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 345566888999999999999999999765
No 391
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.14 E-value=0.00028 Score=48.78 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
..+.|++.|.+||||||+.+.|...
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3478999999999999999999843
No 392
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.13 E-value=0.00034 Score=56.02 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
+..++|.||+|+||||+++.++..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4567889999999999999999876
No 393
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.13 E-value=0.00035 Score=49.41 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=21.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHH
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
...+.|+|.|.+|+||||+++.|..
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHh
Confidence 3458899999999999999999984
No 394
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.13 E-value=0.00024 Score=49.24 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
+.+.|+|.|.+|+||||++..|..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 457899999999999999999984
No 395
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.13 E-value=0.00035 Score=48.11 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
..+.|++.|.+||||||+.+.|...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3578999999999999999999854
No 396
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.12 E-value=0.00022 Score=48.70 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
..+.|++.|.+||||||+.+.|..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 357899999999999999999985
No 397
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.12 E-value=0.00033 Score=48.52 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHH
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
...+.|++.|.+|+||||+.+.+...
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999999843
No 398
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.12 E-value=0.00036 Score=56.75 Aligned_cols=27 Identities=33% Similarity=0.556 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
..+.+|+|+|++||||||++..|+..+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999999776
No 399
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.12 E-value=0.00037 Score=49.11 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~ 30 (196)
...+.|++.|.+||||||++..|.
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHC
T ss_pred CCccEEEEECCCCCCHHHHHHHHH
Confidence 456889999999999999999986
No 400
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.11 E-value=0.00035 Score=49.02 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
..+.|+|.|.+||||||+++.|...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4578999999999999999999853
No 401
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.11 E-value=0.00034 Score=53.12 Aligned_cols=25 Identities=32% Similarity=0.694 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
+.++++.|++||||||++..|+..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6788999999999999999999776
No 402
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.11 E-value=0.00039 Score=48.03 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHH
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
...+.|++.|.+||||||+.+.|...
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 34578999999999999999999853
No 403
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.11 E-value=0.00041 Score=53.89 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCC
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGL 35 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~ 35 (196)
+..+.|.|++|+||||+++.+++.++.
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346788999999999999999998854
No 404
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.10 E-value=0.00039 Score=47.46 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
.+.|++.|++||||||+.+.|...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 478999999999999999999854
No 405
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.00024 Score=54.38 Aligned_cols=26 Identities=8% Similarity=0.102 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
.+..+.|.||||+|||++++.+.+.+
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45677889999999999999999987
No 406
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.09 E-value=0.00036 Score=49.69 Aligned_cols=24 Identities=21% Similarity=0.428 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
.+.|+|.|.+|+||||+++.|...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 478999999999999999998853
No 407
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.09 E-value=0.00036 Score=48.86 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
..+.|+|.|.+||||||+.+.|..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 347899999999999999999984
No 408
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.09 E-value=0.00034 Score=49.22 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=20.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~ 30 (196)
...+.|+|.|.+||||||++..|.
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~ 38 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVK 38 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHh
Confidence 345789999999999999999988
No 409
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.08 E-value=0.00036 Score=51.63 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
....|+|+|.+||||||+...|..
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999999983
No 410
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.08 E-value=0.00021 Score=49.63 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=11.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
..+.|+|.|.+||||||++..|..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEEEECCCCC-----------
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999999873
No 411
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=97.08 E-value=0.0026 Score=48.04 Aligned_cols=160 Identities=11% Similarity=0.129 Sum_probs=77.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCC-ceechhHHHHHHHhcCCh---------hhHHHHHHhhcCCCCCHH------
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGL-THLSAGELLRREIASNSE---------YGTTILNTIKEGKIVPSE------ 71 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~-~~i~~~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~------ 71 (196)
.++.|+|.|| ||+|+.+.|.+.+.- ...++....| ....+.. ....+...+..+..+...
T Consensus 99 ~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR-~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~gn~ 174 (292)
T 3tvt_A 99 YTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTR-PKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNL 174 (292)
T ss_dssp SCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECS-CCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CCCeEEEeCC---CHHHHHHHHHHhChhhccccccCCcc-CCcCCccCCccccccCCHHHHHHHHhcCceEEEEEEccce
Confidence 3456777887 599999999988742 2122111111 1111110 122345555555443211
Q ss_pred --HHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh-HHHHHHHhhccCCCCCCcHHHHHHHH
Q 029287 72 --VTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE-EEMVNRVLNRNEGRVDDNIDTVRKRL 148 (196)
Q Consensus 72 --~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~-~~~~~Rl~~r~~~~~~~~~~~~~~~~ 148 (196)
.....+.+.+.. +..+|+|--+.+..+ +. .....| ++||+..|. +.+.+|+.+| .++..+.+..+.
T Consensus 175 YGT~~~~V~~~~~~--gk~viLdid~qg~~~---lk-~~~~~p-i~IFI~PpS~e~L~~r~~~r----~~e~~~~~~~r~ 243 (292)
T 3tvt_A 175 YGTSVASVREVAEK--GKHCILDVSGNAIKR---LQ-VAQLYP-VAVFIKPKSVDSVMEMNRRM----TEEQAKKTYERA 243 (292)
T ss_dssp EEEEHHHHHHHHHH--TCEEEECCCTHHHHH---HH-HTTCCC-EEEEECCSCHHHHHHTCTTS----CTTHHHHHHHHH
T ss_pred eEEehHHHHHHHHc--CCcEEEeccchhhhh---cc-cccccc-eEEEEECCCHHHHHHHHhCC----CchhHHHHHHHH
Confidence 113445555554 556777744322221 11 223344 557777655 5555554433 344444433333
Q ss_pred HHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287 149 QVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAAL 191 (196)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~ 191 (196)
.. ....+.+....+ |. +.++++..+++.++|...
T Consensus 244 ~k-------~e~e~~~~fD~v-Iv-Nddle~a~~~l~~iI~~e 277 (292)
T 3tvt_A 244 IK-------MEQEFGEYFTGV-VQ-GDTIEEIYSKVKSMIWSQ 277 (292)
T ss_dssp HH-------HHHHHTTTCSEE-EC-CSSHHHHHHHHHHHHHHH
T ss_pred HH-------HHHhhhhhCCEE-EE-CcCHHHHHHHHHHHHHHh
Confidence 21 122233332333 33 347899999998888653
No 412
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.07 E-value=0.00044 Score=55.03 Aligned_cols=26 Identities=38% Similarity=0.562 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
.+.+|++.|++||||||++..|+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46788899999999999999999877
No 413
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.07 E-value=0.00041 Score=48.34 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHH
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
.....|++.|.+||||||+.+.|..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 3568899999999999999999983
No 414
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.06 E-value=0.00036 Score=49.09 Aligned_cols=24 Identities=21% Similarity=0.084 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
+...|++.|++||||||+.+.|..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 346889999999999999999985
No 415
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.06 E-value=0.00037 Score=53.18 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
...+.|.||+|+|||+++.+++..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 3567789999999999999999764
No 416
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.06 E-value=0.00032 Score=48.93 Aligned_cols=22 Identities=18% Similarity=0.207 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~ 31 (196)
+.|++.|.+||||||+.+.|..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4688999999999999999983
No 417
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.06 E-value=0.00044 Score=48.27 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHH
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
+..+.|++.|.+||||||+.+.|..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3568899999999999999999983
No 418
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.06 E-value=0.00046 Score=47.87 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
.+.|++.|.+|+||||+.+.|...
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 478899999999999999999843
No 419
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.05 E-value=0.00039 Score=51.24 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~ 30 (196)
..+.|+|+|.+|+||||+++.|.
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~ 42 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSIL 42 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCcHHHHHHHHh
Confidence 45889999999999999999998
No 420
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.05 E-value=0.00031 Score=55.51 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~ 31 (196)
-+++|.|+|||||||++..|+-
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHH
Confidence 4788999999999999997763
No 421
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.05 E-value=0.0003 Score=57.63 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=18.2
Q ss_pred eEEEEEcCCCCChHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKI 29 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L 29 (196)
-+++|.|+|||||||+++.+
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHH
Confidence 47889999999999999994
No 422
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.05 E-value=0.00035 Score=48.60 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
..+.|++.|.+||||||+.+.|..
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhc
Confidence 447899999999999999999984
No 423
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.05 E-value=0.00041 Score=48.74 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
..+.|++.|.+|+||||+.+.|...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3478999999999999999999854
No 424
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.04 E-value=0.00042 Score=47.85 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
..+.|++.|.+|+||||+.+.|...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3578999999999999999999853
No 425
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.04 E-value=0.00042 Score=53.55 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~ 30 (196)
+-+.+|+||+||||||++.++.
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3577899999999999999874
No 426
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.04 E-value=0.00031 Score=53.91 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 029287 11 ICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~ 30 (196)
+.+|+|++||||||++.+|.
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHH
Confidence 78899999999999999998
No 427
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.04 E-value=0.00032 Score=59.90 Aligned_cols=21 Identities=19% Similarity=0.214 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~ 30 (196)
-+++|+||+||||||+++.++
T Consensus 577 ~i~~I~GpNGsGKSTlLr~ia 597 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTA 597 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 478899999999999999998
No 428
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.03 E-value=0.00047 Score=48.29 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
..+.|+|.|.+|+||||+++.|...
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 3478999999999999999988853
No 429
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.03 E-value=0.00042 Score=49.52 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
..+.|+|.|.+|+||||+...|...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578899999999999999999854
No 430
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.03 E-value=0.00037 Score=54.90 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
...++|.|+|||||||+.++|..
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 46899999999999999999996
No 431
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.03 E-value=0.00019 Score=51.67 Aligned_cols=25 Identities=16% Similarity=0.084 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHH
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
.....|+|+|.+||||||+.+.|..
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~ 51 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCN 51 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTT
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 3457889999999999999999984
No 432
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.03 E-value=0.00037 Score=48.97 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
..+.|+|.|.+||||||+.+.|...
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcC
Confidence 4578999999999999999999843
No 433
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.03 E-value=0.00046 Score=55.69 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
-++|.|+||+||||+++.|++.+
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 45779999999999999999986
No 434
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.03 E-value=0.00049 Score=46.76 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHH
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~ 32 (196)
.|++.|.+|+||||+...|...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999999743
No 435
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.02 E-value=0.00036 Score=49.45 Aligned_cols=23 Identities=22% Similarity=0.066 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~ 30 (196)
++..|++.|++||||||+.+.|.
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 45688999999999999999997
No 436
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.02 E-value=0.00017 Score=48.56 Aligned_cols=25 Identities=28% Similarity=0.149 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYG 34 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~ 34 (196)
.-+.|.|++|+|||++++.+.+..+
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CcEEEECCCCccHHHHHHHHHHhCC
Confidence 3467799999999999999986654
No 437
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.02 E-value=0.00046 Score=49.64 Aligned_cols=27 Identities=22% Similarity=0.457 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCChHHHHHH-HHHHh
Q 029287 7 KGPFICFVLGGPGSGKGTQCAK-IVKNY 33 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~-L~~~~ 33 (196)
...+.|++.|.+||||||+++. +...+
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4457899999999999999998 55444
No 438
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.02 E-value=0.00024 Score=54.71 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYG 34 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~ 34 (196)
-+.|.|++|+|||++++.+++.++
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCc
Confidence 377899999999999999999875
No 439
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=97.02 E-value=0.0097 Score=50.63 Aligned_cols=160 Identities=15% Similarity=0.182 Sum_probs=82.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhC-CceechhHHHHHHHhcCCh---------hhHHHHHHhhcCCCCCHH-------
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYG-LTHLSAGELLRREIASNSE---------YGTTILNTIKEGKIVPSE------- 71 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~-~~~i~~~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~------- 71 (196)
++.|+|.|| ||+|+.+.|.+.+. ...+......| ....+.. ....+.+.+..+..+...
T Consensus 531 ~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR-~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g~~Y 606 (721)
T 2xkx_A 531 ARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTR-PKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLY 606 (721)
T ss_pred CCEEEEECC---CHHHHHHHHHHhCccceeeccccccc-CCCCCccCCceeEEecCHHHHHHHHhcCCceEEEEECCccc
Confidence 467778998 39999999998763 12222212222 1111111 233455666666554321
Q ss_pred -HHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 029287 72 -VTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQV 150 (196)
Q Consensus 72 -~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~ 150 (196)
.....+.+.+.. +..+|+|--+.+.. .+ +.....| ++||+..|.....+++..|. +.+.+++|+..
T Consensus 607 Gt~~~~v~~~~~~--g~~~ildi~~~~~~---~l-~~~~~~p-~~ifi~pps~~~L~~l~~R~------t~~~~~~rl~~ 673 (721)
T 2xkx_A 607 GTSVQSVREVAEQ--GKHCILDVSANAVR---RL-QAAHLHP-IAIFIRPRSLENVLEINKRI------TEEQARKAFDR 673 (721)
T ss_pred eeeHHHHHHHHHC--CCcEEEeCCHHHHH---HH-HhcccCC-EEEEEeCCcHHHHHHHhccC------CHHHHHHHHHH
Confidence 123445566653 56677875321111 11 1123355 77888877655555576662 22445555543
Q ss_pred HHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287 151 FKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAAL 191 (196)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~ 191 (196)
.... ...+.+...+ +|+++ ++++.++++.++|...
T Consensus 674 a~~~----e~~~~~~fd~-vi~Nd-~l~~a~~~l~~~i~~~ 708 (721)
T 2xkx_A 674 ATKL----EQEFTECFSA-IVEGD-SFEEIYHKVKRVIEDL 708 (721)
T ss_pred HHHH----HHhccccCcE-EEECc-CHHHHHHHHHHHHHhc
Confidence 3211 1111222233 34444 8999999988888653
No 440
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.02 E-value=0.00045 Score=48.34 Aligned_cols=23 Identities=26% Similarity=0.137 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
.+.|+|.|.+|+||||+.+.|..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHc
Confidence 47899999999999999999984
No 441
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.01 E-value=0.00036 Score=48.89 Aligned_cols=24 Identities=17% Similarity=0.451 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
.+.|+|.|.+|+||||+++.|...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 478999999999999999999854
No 442
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.01 E-value=0.00039 Score=54.18 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHHH
Q 029287 11 ICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~ 31 (196)
+.+|.|++||||||++.++.-
T Consensus 28 ~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 889999999999999999983
No 443
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.01 E-value=0.00035 Score=59.93 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~ 30 (196)
.+++|+||+||||||+++.++
T Consensus 608 ~i~~ItGpNGsGKSTlLr~ia 628 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTA 628 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 578899999999999999998
No 444
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.00 E-value=0.0006 Score=54.45 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
..|.+|++.|++||||||++..|+..+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356889999999999999999999776
No 445
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.00 E-value=0.00046 Score=53.67 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
.++.|.|+|||||||++..++..+
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 588899999999999999998764
No 446
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.00 E-value=0.00055 Score=47.98 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
.+.|+|.|.+|+||||+++.|...
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 478999999999999999999865
No 447
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.00 E-value=0.00039 Score=51.57 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYG 34 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~ 34 (196)
..+.|.|++|+|||++++.+.+..+
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4567899999999999999998763
No 448
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.00 E-value=0.0006 Score=51.87 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=20.6
Q ss_pred EEEEcCCCCChHHHHHHHHHHh
Q 029287 12 CFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 12 i~i~G~~GsGKST~~~~L~~~~ 33 (196)
+.|.||+|+||||+++.+++.+
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7889999999999999999886
No 449
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.98 E-value=0.00064 Score=49.37 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
.+++++|++||||||.+-.++.++
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH
Confidence 688889999999999998888776
No 450
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.98 E-value=0.00041 Score=52.74 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~ 30 (196)
..+++|.|++||||||+.+.|.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~ 29 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLL 29 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999999
No 451
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.98 E-value=0.0005 Score=48.34 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~ 30 (196)
.+.|+|.|.+||||||+.+.|.
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~ 47 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFT 47 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHh
Confidence 3679999999999999999997
No 452
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.98 E-value=0.00051 Score=49.24 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~ 30 (196)
..+.|++.|.+|+||||+++.|.
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~ 55 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFA 55 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHH
Confidence 45789999999999999999998
No 453
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.97 E-value=0.00048 Score=52.53 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=22.0
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHH
Q 029287 5 GGKGPFICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 5 ~~~~~~~i~i~G~~GsGKST~~~~L~ 30 (196)
+++.+-+++|+|.+|+||||+.+.|.
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~ 31 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLL 31 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHh
Confidence 34455689999999999999999998
No 454
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=96.97 E-value=0.0058 Score=46.80 Aligned_cols=169 Identities=11% Similarity=0.057 Sum_probs=77.1
Q ss_pred ceEEEEEcCCCCChHH-------HHHHHHHHhCCce-ec--hhHHHHHHHhc--CChhhHHHHHHhhcCCCCCHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGT-------QCAKIVKNYGLTH-LS--AGELLRREIAS--NSEYGTTILNTIKEGKIVPSEVTVSL 76 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST-------~~~~L~~~~~~~~-i~--~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~ 76 (196)
+..|+|+||.++|-=+ +...|.++|+-.+ +. ..++....... .......+...+..+. -..+...
T Consensus 142 ~RPvvlvGP~~~g~~~td~m~~~l~d~l~~~F~~~i~~tR~~~d~~~~~r~~~~~~~~~~~~e~~~~~~~---~~ev~se 218 (337)
T 4dey_A 142 MRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVLNNPSKHAIIERSNTRSS---LAEVQSE 218 (337)
T ss_dssp SCCEEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEEEEECSCGGGC-------------------CCC---HHHHHHH
T ss_pred CCceEEECCccccchhHHHHHHHHHHhhHHhcCCccceEeecchhhhcchhhhhcccchhhhcccccccc---hHHHHhH
Confidence 4558889999999764 6777788886442 22 01111110000 0001111222222222 1223344
Q ss_pred HHHHHhcC-CCCcEEEeCCCC-CHHHHHHHHHHhCCCCcEEEEeecC-hHHHHHHHhhccCCCCCCcHHHHHHHHHHHHh
Q 029287 77 IQKEMESS-DSKKFLIDGFPR-SEENRAAFERIMGAEPDIVLFFDCP-EEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKA 153 (196)
Q Consensus 77 i~~~l~~~-~~~~~iid~~~~-~~~~~~~~~~~~~~~p~~~i~ld~~-~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~ 153 (196)
+.+..... .+..+|+|=-+. +..+.. ...+.| ++||+.-| .+.+.+||..|+. ..++++..-..
T Consensus 219 Ve~i~~v~~~Gk~vILDIDvQnGa~qlk----~~~~~~-i~IFI~PPS~eeLe~RL~~RGt--------~~~~rl~~al~ 285 (337)
T 4dey_A 219 IERIFELARTLQLVVLDADTINHPAQLS----KTSLAP-IVVYVKISSPKVLQRLIKSRGK--------SQAKHLNVQMV 285 (337)
T ss_dssp HHHHHHHTTTCCEEEEEETTCCSGGGTT----TSSCCC-EEEEECCSCHHHHHHHHHTTCH--------HHHTTHHHHHH
T ss_pred HHHHHHHHhCCCEEEEEeCcHHHHHHHH----hcCCCC-EEEEEECcCHHHHHHHHHhCCc--------hHHHHHHHHHH
Confidence 55555543 456777774332 332221 111223 33555554 3889999988731 12222222111
Q ss_pred chHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhhhc
Q 029287 154 LNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKLVT 195 (196)
Q Consensus 154 ~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~~~ 195 (196)
........+......++| +.++++.++++.++|..++...
T Consensus 286 ~ae~E~~~~~~~FDyvIV--NDdLe~A~~~L~~iI~~~~~~~ 325 (337)
T 4dey_A 286 AADKLAQCPPELFDVILD--ENQLEDACEHLADYLEAYWKAT 325 (337)
T ss_dssp HHHHHHHSCGGGCSEEEC--CSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCcccCCEEEE--CCCHHHHHHHHHHHHHHHHhcc
Confidence 111111112222333333 3578999999999998876543
No 455
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.97 E-value=0.00057 Score=53.30 Aligned_cols=28 Identities=25% Similarity=0.211 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhC
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYG 34 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~ 34 (196)
+++..|.|.|.+||||||+++.+.=.++
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~i~~~ 58 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMRIIHG 58 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHS
T ss_pred cCccEEEEECCCCCcHHHHHHHHHHHhC
Confidence 5578999999999999999999865553
No 456
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.96 E-value=0.00059 Score=52.32 Aligned_cols=31 Identities=13% Similarity=0.121 Sum_probs=26.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceech
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSA 40 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~ 40 (196)
..++|.|++|+||||+++.+.+..+..+++.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~ 62 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDC 62 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSSEEEEEH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcCcEEEEe
Confidence 4778899999999999999998877555554
No 457
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.95 E-value=0.00067 Score=51.41 Aligned_cols=22 Identities=23% Similarity=0.540 Sum_probs=20.5
Q ss_pred EEEEcCCCCChHHHHHHHHHHh
Q 029287 12 CFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 12 i~i~G~~GsGKST~~~~L~~~~ 33 (196)
+.|.||+|+||||+++.+++.+
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHh
Confidence 7889999999999999999875
No 458
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.95 E-value=0.00056 Score=51.23 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
.+.|+|.|.+||||||+.+.|..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHC
Confidence 46899999999999999999983
No 459
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.95 E-value=0.00051 Score=54.80 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
+-+++|.||+||||||++.++.--+
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhh
Confidence 4578899999999999999998443
No 460
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.94 E-value=0.00042 Score=48.54 Aligned_cols=24 Identities=29% Similarity=0.252 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
..+.|++.|.+||||||+.+.|..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~ 43 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKP 43 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 447899999999999999999883
No 461
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.94 E-value=0.0005 Score=51.04 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
+.+.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHC
Confidence 457899999999999999999983
No 462
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.94 E-value=0.00067 Score=51.48 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.5
Q ss_pred EEEEcCCCCChHHHHHHHHHHh
Q 029287 12 CFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 12 i~i~G~~GsGKST~~~~L~~~~ 33 (196)
+.|.||+|+||||+++.+++.+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7889999999999999999875
No 463
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.94 E-value=0.00064 Score=48.05 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
..+.|+|.|.+||||||++..|..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHT
T ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Confidence 357899999999999999999983
No 464
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.92 E-value=0.00066 Score=49.13 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~ 30 (196)
..+.|+|.|.+|+||||++..|.
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~ 50 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVS 50 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 45889999999999999999998
No 465
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.92 E-value=0.00067 Score=47.88 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=20.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~ 30 (196)
...+.|++.|.+|+||||+.+.|.
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~ 41 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYT 41 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999998
No 466
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.91 E-value=0.00054 Score=48.51 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~ 30 (196)
..+.|+|.|.+||||||+++.|.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~ 46 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFI 46 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHH
Confidence 34789999999999999999997
No 467
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.91 E-value=0.00057 Score=48.21 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=20.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHH
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
+..+.|++.|.+|+||||+++.+..
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 4457899999999999999998874
No 468
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.91 E-value=0.00028 Score=60.76 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=25.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCcee
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHL 38 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i 38 (196)
+..++|.||||+||||+++.++..++..++
T Consensus 511 ~~~vLL~GppGtGKT~Lakala~~~~~~~i 540 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLAKAIANECQANFI 540 (806)
T ss_dssp CCCCCCBCCTTSSHHHHHHHHHHHHTCCCC
T ss_pred CceeEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 356788999999999999999999865544
No 469
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.90 E-value=0.00057 Score=58.52 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=28.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCCceech
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSA 40 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~ 40 (196)
.+.-+.+.||||+|||.++++++...+..++..
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v 542 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISI 542 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTTTCEEEEC
T ss_pred CCceEEEecCCCCCchHHHHHHHHHhCCceEEe
Confidence 345678899999999999999999998877654
No 470
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.89 E-value=0.00054 Score=50.80 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~ 31 (196)
+.|+|.|.+||||||+.+.|..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g 23 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTN 23 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 4688899999999999999983
No 471
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.89 E-value=0.00014 Score=57.61 Aligned_cols=28 Identities=14% Similarity=0.061 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHHhCCCC--cEEEEeecCh
Q 029287 94 FPRSEENRAAFERIMGAEP--DIVLFFDCPE 122 (196)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~p--~~~i~ld~~~ 122 (196)
++.++.+++.++.++...| ++ ++||+|+
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~-LlLDEpt 325 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPS-VVFDEVD 325 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSE-EEESSTT
T ss_pred cCHhHHHHHHHHHHHHhCCCCCE-EEEECCC
Confidence 4667889999999877677 77 7899998
No 472
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.89 E-value=0.00071 Score=48.10 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
..+.|+|.|.+|+||||+...|..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 357899999999999999999984
No 473
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.88 E-value=0.00068 Score=48.20 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHH
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
...+.|++.|.+||||||++..+...
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 34578999999999999999998853
No 474
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.88 E-value=0.00067 Score=48.09 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
.+.|+|.|.+|+||||+++.|..
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhh
Confidence 47899999999999999999974
No 475
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.88 E-value=0.0007 Score=48.44 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCChHHHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
.+.|+|+|.+||||||+++.|..
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHhc
Confidence 47899999999999999999983
No 476
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.87 E-value=0.00079 Score=47.42 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
..+.|+|.|.+|+||||+...+...
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3578999999999999999999853
No 477
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.87 E-value=0.00071 Score=47.90 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
.+.|++.|.+||||||++..|...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 368999999999999999999853
No 478
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.86 E-value=0.00077 Score=53.92 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
.+..++|.|+|||||||+.+.|..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g 202 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILN 202 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHT
T ss_pred cCceEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999999983
No 479
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.86 E-value=0.00052 Score=47.95 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~ 30 (196)
+..+.|++.|.+||||||+...|.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 456889999999999999999986
No 480
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.85 E-value=0.00058 Score=53.38 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
+.++|.|.|||||||+.+.|...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999965
No 481
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.85 E-value=0.00056 Score=56.99 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYG 34 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~ 34 (196)
..++|.||+||||||+++.|+..++
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 3678899999999999999998763
No 482
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.83 E-value=0.001 Score=49.47 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCC
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGL 35 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~ 35 (196)
..++|.||||+|||+++..|+..++.
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 46888999999999999999987544
No 483
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.83 E-value=0.00077 Score=47.96 Aligned_cols=23 Identities=22% Similarity=0.132 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
.+.|++.|.+||||||+...|..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHhc
Confidence 36889999999999999999985
No 484
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.82 E-value=0.00076 Score=51.40 Aligned_cols=29 Identities=21% Similarity=0.424 Sum_probs=24.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLS 39 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~ 39 (196)
.-++|.|+||+||||++..|.++ |...+.
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~ 173 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKR-GHRLVA 173 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT-TCEEEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHhc-CCceec
Confidence 46888999999999999999986 665554
No 485
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.81 E-value=0.00082 Score=52.17 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
.++.|.|+|||||||++..++...
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 578889999999999999988654
No 486
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.81 E-value=0.00066 Score=59.16 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~ 30 (196)
.+++|+||+||||||+++.++
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 578899999999999999983
No 487
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.80 E-value=0.00099 Score=47.77 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
..+.|+|.|.+|+||||++..|...
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcC
Confidence 3478999999999999999999853
No 488
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.80 E-value=0.00089 Score=51.21 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
..+.|.|+||+||||++..++..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 45688999999999999999865
No 489
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.80 E-value=0.00086 Score=50.20 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
.+.|+|.|.+||||||+.+.|..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g 25 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTG 25 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 47899999999999999999984
No 490
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.80 E-value=0.0016 Score=46.07 Aligned_cols=25 Identities=16% Similarity=0.289 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHHHh
Q 029287 9 PFICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
..+++++|+.||||||.+-.++.++
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH
Confidence 3688999999999999999888887
No 491
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.79 E-value=0.0013 Score=50.66 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=25.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHHHhCCc
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLT 36 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~ 36 (196)
+.+..+.+.||+|+||||+++.+++.+...
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 445678889999999999999999998643
No 492
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.78 E-value=0.0011 Score=47.17 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIVKN 32 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~~~ 32 (196)
..+.|+|.|.+|+||||+...|...
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999843
No 493
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.76 E-value=0.00045 Score=60.01 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~ 30 (196)
.+++|+||+||||||+.+.++
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHHHHH
Confidence 578899999999999999886
No 494
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.76 E-value=0.0012 Score=56.47 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNY 33 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~ 33 (196)
.-++|.|+||+||||+++.|++.+
T Consensus 202 ~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 202 NNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999987
No 495
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.73 E-value=0.0011 Score=47.55 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029287 8 GPFICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 8 ~~~~i~i~G~~GsGKST~~~~L~ 30 (196)
..+.|+|.|.+|+||||+...+.
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34789999999999999999987
No 496
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.73 E-value=0.00095 Score=51.90 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHH
Q 029287 7 KGPFICFVLGGPGSGKGTQCAKIVK 31 (196)
Q Consensus 7 ~~~~~i~i~G~~GsGKST~~~~L~~ 31 (196)
..+..+++.|++|+||||+.+.|..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~ 189 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTT 189 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3567899999999999999999983
No 497
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.71 E-value=0.0011 Score=50.37 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029287 9 PFICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 9 ~~~i~i~G~~GsGKST~~~~L~ 30 (196)
...|+|.|.+|+||||+++.|.
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~ 28 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLL 28 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999999998
No 498
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=96.69 E-value=0.00079 Score=51.27 Aligned_cols=29 Identities=14% Similarity=0.268 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287 10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLS 39 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~ 39 (196)
.-++|.|+||+||||++..|.++ |...+.
T Consensus 148 ~gvli~G~sG~GKStlal~l~~~-G~~lv~ 176 (312)
T 1knx_A 148 VGVLLTGRSGIGKSECALDLINK-NHLFVG 176 (312)
T ss_dssp EEEEEEESSSSSHHHHHHHHHTT-TCEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc-CCEEEe
Confidence 45788999999999999998865 655544
No 499
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.68 E-value=0.001 Score=51.96 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 029287 10 FICFVLGGPGSGKGTQCAKIV 30 (196)
Q Consensus 10 ~~i~i~G~~GsGKST~~~~L~ 30 (196)
.+++|.|++||||||+.+.|.
T Consensus 180 ~~V~lvG~~naGKSTLln~L~ 200 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLT 200 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 458999999999999999999
No 500
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.68 E-value=0.00058 Score=55.55 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC
Q 029287 11 ICFVLGGPGSGKGTQCAKIVKNYG 34 (196)
Q Consensus 11 ~i~i~G~~GsGKST~~~~L~~~~~ 34 (196)
-+.|.||||+|||++++.|++.++
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGGGBS
T ss_pred eeEeecCchHHHHHHHHHHHHHHh
Confidence 577899999999999999998763
Done!