Query 029288
Match_columns 196
No_of_seqs 110 out of 498
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 10:30:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029288.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029288hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2922 Uncharacterized conser 100.0 1.3E-49 2.8E-54 352.7 11.3 164 1-164 153-316 (335)
2 PF05653 Mg_trans_NIPA: Magnes 100.0 8.4E-45 1.8E-49 321.1 14.0 162 1-162 139-300 (300)
3 PRK02971 4-amino-4-deoxy-L-ara 95.3 0.035 7.6E-07 43.9 5.0 72 81-158 54-126 (129)
4 PRK09541 emrE multidrug efflux 95.2 0.04 8.7E-07 42.5 5.0 81 67-156 25-105 (110)
5 PRK15051 4-amino-4-deoxy-L-ara 95.2 0.094 2E-06 40.2 7.0 80 69-155 31-110 (111)
6 PRK11431 multidrug efflux syst 95.2 0.071 1.5E-06 40.9 6.2 81 66-155 23-103 (105)
7 PRK10650 multidrug efflux syst 94.5 0.066 1.4E-06 41.4 4.6 78 67-153 30-107 (109)
8 PRK10452 multidrug efflux syst 94.3 0.11 2.5E-06 40.7 5.5 72 80-157 35-106 (120)
9 TIGR03340 phn_DUF6 phosphonate 91.5 0.51 1.1E-05 40.7 6.0 74 75-155 63-136 (281)
10 COG2510 Predicted membrane pro 91.4 1.4 3E-05 35.7 7.8 84 62-154 51-139 (140)
11 PF00893 Multi_Drug_Res: Small 91.1 0.8 1.7E-05 33.8 5.9 68 66-138 23-90 (93)
12 COG2076 EmrE Membrane transpor 87.6 0.92 2E-05 35.1 4.1 76 67-155 25-104 (106)
13 TIGR03340 phn_DUF6 phosphonate 86.5 3.4 7.3E-05 35.6 7.5 66 79-152 216-281 (281)
14 PF06800 Sugar_transport: Suga 85.8 7.1 0.00015 34.8 9.3 92 66-160 35-128 (269)
15 PF00892 EamA: EamA-like trans 85.3 0.86 1.9E-05 33.0 2.8 61 85-152 64-124 (126)
16 PLN00411 nodulin MtN21 family 85.2 1.7 3.8E-05 39.6 5.3 63 91-160 272-334 (358)
17 PF13536 EmrE: Multidrug resis 84.1 1.8 3.8E-05 32.5 4.1 65 87-159 47-111 (113)
18 TIGR00776 RhaT RhaT L-rhamnose 82.6 5.7 0.00012 34.8 7.3 72 85-159 70-141 (290)
19 TIGR00950 2A78 Carboxylate/Ami 82.4 8.6 0.00019 32.0 8.0 71 71-149 187-259 (260)
20 PF08507 COPI_assoc: COPI asso 81.6 3.5 7.6E-05 32.4 5.1 19 134-152 85-103 (136)
21 PRK10532 threonine and homoser 79.0 11 0.00023 32.8 7.8 79 71-156 204-283 (293)
22 PF06027 DUF914: Eukaryotic pr 78.2 14 0.0003 33.8 8.5 41 114-160 271-311 (334)
23 COG4975 GlcU Putative glucose 74.0 2.8 6.2E-05 37.4 2.7 70 85-158 70-139 (288)
24 TIGR00776 RhaT RhaT L-rhamnose 65.5 11 0.00024 33.0 4.6 68 86-156 222-290 (290)
25 PRK11272 putative DMT superfam 62.2 27 0.0006 30.2 6.5 66 85-157 223-288 (292)
26 PF10639 UPF0546: Uncharacteri 59.8 15 0.00032 28.7 3.9 54 93-152 59-112 (113)
27 PRK11453 O-acetylserine/cystei 58.4 24 0.00052 30.6 5.5 68 82-156 222-289 (299)
28 PRK11689 aromatic amino acid e 56.9 20 0.00042 31.2 4.6 64 83-154 224-287 (295)
29 COG0697 RhaT Permeases of the 52.0 73 0.0016 26.2 7.2 61 88-155 228-288 (292)
30 PF07457 DUF1516: Protein of u 51.4 65 0.0014 24.9 6.2 82 70-159 5-90 (110)
31 PRK13499 rhamnose-proton sympo 51.0 11 0.00024 34.7 2.2 41 114-155 302-342 (345)
32 TIGR00881 2A0104 phosphoglycer 50.0 27 0.00058 29.4 4.3 19 102-120 118-136 (379)
33 PF08449 UAA: UAA transporter 48.0 35 0.00076 29.8 4.8 80 70-156 220-299 (303)
34 COG0697 RhaT Permeases of the 44.4 50 0.0011 27.2 5.0 71 84-160 79-149 (292)
35 PRK13499 rhamnose-proton sympo 41.4 52 0.0011 30.3 5.0 71 83-154 82-153 (345)
36 PF11970 Git3_C: G protein-cou 40.8 25 0.00053 25.4 2.3 49 101-149 13-61 (76)
37 PRK15430 putative chlorampheni 40.7 53 0.0011 28.5 4.8 43 83-127 222-264 (296)
38 KOG2922 Uncharacterized conser 39.8 72 0.0016 29.5 5.6 111 39-161 26-143 (335)
39 PF06027 DUF914: Eukaryotic pr 38.7 2.2E+02 0.0047 26.0 8.6 64 85-155 88-152 (334)
40 KOG0569 Permease of the major 38.2 14 0.00031 35.4 0.9 122 23-153 81-203 (485)
41 PF12271 Chs3p: Chitin synthas 38.0 25 0.00054 31.8 2.3 116 2-155 50-171 (293)
42 PF06800 Sugar_transport: Suga 36.6 30 0.00065 30.8 2.6 37 113-151 232-268 (269)
43 PRK09509 fieF ferrous iron eff 36.1 56 0.0012 28.7 4.3 121 29-152 67-198 (299)
44 TIGR00817 tpt Tpt phosphate/ph 34.4 44 0.00095 28.9 3.3 58 94-158 240-297 (302)
45 PRK13673 hypothetical protein; 33.9 1.8E+02 0.0039 22.9 6.3 83 70-158 4-87 (118)
46 PF15048 OSTbeta: Organic solu 33.6 21 0.00045 28.5 1.0 32 123-155 26-57 (125)
47 PRK03557 zinc transporter ZitB 33.3 2.4E+02 0.0053 25.0 7.9 121 30-153 76-206 (312)
48 cd08764 Cyt_b561_CG1275_like N 32.1 1E+02 0.0022 26.6 5.1 40 127-166 166-205 (214)
49 PF05814 DUF843: Baculovirus p 32.1 83 0.0018 23.4 3.9 30 65-94 19-48 (83)
50 PF08733 PalH: PalH/RIM21; In 31.0 84 0.0018 28.8 4.6 82 19-100 100-187 (348)
51 TIGR00950 2A78 Carboxylate/Ami 30.2 1.8E+02 0.0038 24.0 6.2 61 88-155 60-120 (260)
52 PF04276 DUF443: Protein of un 29.0 3.4E+02 0.0073 22.7 7.7 57 68-124 86-161 (199)
53 PF14018 DUF4234: Domain of un 28.8 1.2E+02 0.0025 21.1 4.1 27 75-101 5-31 (75)
54 PF07857 DUF1632: CEO family ( 28.1 1.7E+02 0.0037 25.8 5.9 50 109-159 85-139 (254)
55 PRK15430 putative chlorampheni 27.7 1.9E+02 0.004 25.1 6.1 65 82-153 80-144 (296)
56 PF04184 ST7: ST7 protein; In 26.5 70 0.0015 31.3 3.4 39 89-127 20-67 (539)
57 PF06679 DUF1180: Protein of u 25.6 68 0.0015 26.6 2.8 27 132-158 94-120 (163)
58 PF06379 RhaT: L-rhamnose-prot 25.6 1.6E+02 0.0035 27.3 5.4 110 43-153 221-339 (344)
59 PF14851 FAM176: FAM176 family 25.2 1.2E+02 0.0025 25.0 4.0 6 185-190 86-91 (153)
60 TIGR00893 2A0114 d-galactonate 24.8 80 0.0017 26.4 3.2 13 24-36 51-63 (399)
61 PF02038 ATP1G1_PLM_MAT8: ATP1 24.3 38 0.00082 22.9 0.9 27 131-157 12-38 (50)
62 PF12273 RCR: Chitin synthesis 23.3 64 0.0014 25.0 2.1 6 24-29 21-26 (130)
63 PF11368 DUF3169: Protein of u 22.6 54 0.0012 28.1 1.7 61 38-98 15-75 (248)
64 PF06422 PDR_CDR: CDR ABC tran 21.5 75 0.0016 23.9 2.1 30 126-155 42-71 (103)
65 PRK11453 O-acetylserine/cystei 20.5 2.1E+02 0.0045 24.7 5.0 62 87-154 71-132 (299)
66 PF03151 TPT: Triose-phosphate 20.3 3.4E+02 0.0074 20.3 5.7 51 95-151 100-150 (153)
67 PF04018 DUF368: Domain of unk 20.0 2.9E+02 0.0064 24.4 5.8 67 77-148 60-126 (257)
No 1
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.3e-49 Score=352.73 Aligned_cols=164 Identities=60% Similarity=1.042 Sum_probs=160.7
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHhhccccCccceEEEEeeeccccccchhhhHHHHHHHHHHccCCCccchhHHHHHHHH
Q 029288 1 MFQSTDFLIYVAATVSVVLALVLHFEPRCGQTNILVYLGICSLMGSLTVVSIKAIGIAIKLTLDGISQIAYPQTWFFLTV 80 (196)
Q Consensus 1 ~~~~p~Fl~Y~~~~~~~~~~Li~~~~pr~g~~~~~vyv~icsl~Gs~tVl~~K~~~~ll~~t~~g~nqf~~~~ty~~l~~ 80 (196)
++++|+|++|+.+++++.++++++.+||+|++|+++|+++||++||+||+++|++|+++|++++|+||+.||+||+++++
T Consensus 153 ~~~~~~Fliy~~~iil~~~il~~~~~p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~~~~ty~~~l~ 232 (335)
T KOG2922|consen 153 LATEPGFLVYVIIIILIVLILIFFYAPRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLFYPLTWIFLLV 232 (335)
T ss_pred HhcCccHHHHHHHHHHHHHHHheeecccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcccccHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhheeeeccccCCCC
Q 029288 81 AAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATREHEQ 160 (196)
Q Consensus 81 lv~t~i~Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV~lLs~~~~~~~ 160 (196)
++.|+++|++|||||||+|||++|+|+|||+||+++|++|+|+||||++++..|+.+++|||+++++|+++|+++||+++
T Consensus 233 ~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~kd~~~ 312 (335)
T KOG2922|consen 233 VATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRTKDMEI 312 (335)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 029288 161 TTAP 164 (196)
Q Consensus 161 ~~~~ 164 (196)
++++
T Consensus 313 ~~~s 316 (335)
T KOG2922|consen 313 SLAS 316 (335)
T ss_pred cccc
Confidence 7654
No 2
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=100.00 E-value=8.4e-45 Score=321.11 Aligned_cols=162 Identities=43% Similarity=0.783 Sum_probs=157.6
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHhhccccCccceEEEEeeeccccccchhhhHHHHHHHHHHccCCCccchhHHHHHHHH
Q 029288 1 MFQSTDFLIYVAATVSVVLALVLHFEPRCGQTNILVYLGICSLMGSLTVVSIKAIGIAIKLTLDGISQIAYPQTWFFLTV 80 (196)
Q Consensus 1 ~~~~p~Fl~Y~~~~~~~~~~Li~~~~pr~g~~~~~vyv~icsl~Gs~tVl~~K~~~~ll~~t~~g~nqf~~~~ty~~l~~ 80 (196)
++.+|+|++|++++.+..+.++++.+||+|++|+++|+++||++||+||+++|+++++++++++|+|||.||.+|+++++
T Consensus 139 ~~~~~~fl~y~~~~~~~~~~L~~~~~~r~g~~~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~~~y~l~~~ 218 (300)
T PF05653_consen 139 LLSQPGFLVYFILVLVLILILIFFIKPRYGRRNILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYPLTYLLLLV 218 (300)
T ss_pred HhcCcceehhHHHHHHHHHHHHHhhcchhcccceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhheeeeccccCCCC
Q 029288 81 AAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATREHEQ 160 (196)
Q Consensus 81 lv~t~i~Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV~lLs~~~~~~~ 160 (196)
+++|+++|++||||||++||+++|+|+|||+||++++++|+|+||||+++++++++++++|++++++||++|+.+||+++
T Consensus 219 ~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~~~~ 298 (300)
T PF05653_consen 219 LVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKDKEI 298 (300)
T ss_pred HHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCchhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 029288 161 TT 162 (196)
Q Consensus 161 ~~ 162 (196)
+|
T Consensus 299 ~~ 300 (300)
T PF05653_consen 299 SQ 300 (300)
T ss_pred cC
Confidence 64
No 3
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=95.30 E-value=0.035 Score=43.87 Aligned_cols=72 Identities=11% Similarity=0.148 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHhccccceeeccceeehhHHHHhhhhh-hhhcccCCCChhhHHHHHHHHHHHhhheeeeccccCC
Q 029288 81 AAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASA-IMFKDWSGQDVSGIASEICGFITVLSGTIILHATREH 158 (196)
Q Consensus 81 lv~t~i~Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~-I~f~E~~~~~~~~i~~~~~G~~ii~~GV~lLs~~~~~ 158 (196)
-+++-..-....|++|++-|.+...|+....+....+.+-. ++|+| ..++.+ .+|..+++.||++++..+++
T Consensus 54 gl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E--~ls~~~----~iGi~lIi~GV~lv~~~~~~ 126 (129)
T PRK02971 54 GLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNE--TFSLKK----TLGVACIMLGVWLINLPTTK 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCHHH----HHHHHHHHHHHHHhccCCCC
Confidence 33455666788999999999999999987776555555544 48988 445554 47889999999999865543
No 4
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=95.22 E-value=0.04 Score=42.54 Aligned_cols=81 Identities=14% Similarity=0.194 Sum_probs=58.6
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHh
Q 029288 67 SQIAYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVL 146 (196)
Q Consensus 67 nqf~~~~ty~~l~~lv~t~i~Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~ 146 (196)
+.|++|.++.. .+++...-+.+|.+|++..+-++.+|+-=..=+..+.+.|.++|+| ..++.+ ..|...++
T Consensus 25 ~gf~~~~~~i~---~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e--~~~~~~----~~gi~lIi 95 (110)
T PRK09541 25 EGFTRLWPSVG---TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQ--RLDLPA----IIGMMLIC 95 (110)
T ss_pred cCCCchhHHHH---HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCC--CCCHHH----HHHHHHHH
Confidence 45777777663 4556667788999999998888776655444455666779999998 345554 46888999
Q ss_pred hheeeecccc
Q 029288 147 SGTIILHATR 156 (196)
Q Consensus 147 ~GV~lLs~~~ 156 (196)
.||.++....
T Consensus 96 ~GVi~l~l~~ 105 (110)
T PRK09541 96 AGVLVINLLS 105 (110)
T ss_pred HHHHHHhcCC
Confidence 9999996543
No 5
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=95.20 E-value=0.094 Score=40.16 Aligned_cols=80 Identities=16% Similarity=0.276 Sum_probs=59.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhh
Q 029288 69 IAYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSG 148 (196)
Q Consensus 69 f~~~~ty~~l~~lv~t~i~Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~G 148 (196)
+++|......+...++...-...+-++++.-|.+...|+-+ .=...+.+.|..+|+| +.++.++ +|...++.|
T Consensus 31 ~~~~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~-l~~v~~~~~~~l~f~E--~ls~~~~----~Gi~lii~G 103 (111)
T PRK15051 31 KRRKHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLS-LNFVWVTLAAVKLWHE--PVSPRHW----CGVAFIIGG 103 (111)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHH-HHHHHHHHHHHHHhCC--CCCHHHH----HHHHHHHHH
Confidence 45554333344444566667888999999999999999998 6666778889999998 5566655 677788889
Q ss_pred eeeeccc
Q 029288 149 TIILHAT 155 (196)
Q Consensus 149 V~lLs~~ 155 (196)
|.+++.+
T Consensus 104 v~~i~~~ 110 (111)
T PRK15051 104 IVILGST 110 (111)
T ss_pred HHHHhcc
Confidence 8887653
No 6
>PRK11431 multidrug efflux system protein; Provisional
Probab=95.18 E-value=0.071 Score=40.91 Aligned_cols=81 Identities=9% Similarity=0.146 Sum_probs=54.4
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHH
Q 029288 66 ISQIAYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITV 145 (196)
Q Consensus 66 ~nqf~~~~ty~~l~~lv~t~i~Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii 145 (196)
.+.|+++.++++. +++...=.++|.+|++.-+..+.+++.=..=+..+.+.|.++|+| +.++.++ +|+..+
T Consensus 23 s~gf~~~~~~~~~---i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e--~~~~~~~----~gi~lI 93 (105)
T PRK11431 23 THGFSRLTPSIIT---VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGE--SASPARL----LSLALI 93 (105)
T ss_pred hhCCccHHHHHHH---HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCC--CCCHHHH----HHHHHH
Confidence 3568888777744 455566688999999976665544433333334445558899998 4455544 678899
Q ss_pred hhheeeeccc
Q 029288 146 LSGTIILHAT 155 (196)
Q Consensus 146 ~~GV~lLs~~ 155 (196)
+.||..|...
T Consensus 94 i~GVv~l~l~ 103 (105)
T PRK11431 94 VAGIIGLKLS 103 (105)
T ss_pred HHHHHhhhcc
Confidence 9999998644
No 7
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=94.53 E-value=0.066 Score=41.39 Aligned_cols=78 Identities=14% Similarity=0.254 Sum_probs=54.9
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHh
Q 029288 67 SQIAYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVL 146 (196)
Q Consensus 67 nqf~~~~ty~~l~~lv~t~i~Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~ 146 (196)
+.|++|...+. .+++...=.++|.+|++.-+-.+.+|+-=..=+..+.+.|.++|+| ..++.++ +|+..++
T Consensus 30 ~gf~~~~~~~~---~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e--~~~~~~~----~gi~lIi 100 (109)
T PRK10650 30 DGFRRKIYGIL---SLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQ--RLNRKGW----IGLVLLL 100 (109)
T ss_pred cCCcchHHHHH---HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCC--CCCHHHH----HHHHHHH
Confidence 56888877553 3455556678999999987776665554444446666778999998 3455544 6778889
Q ss_pred hheeeec
Q 029288 147 SGTIILH 153 (196)
Q Consensus 147 ~GV~lLs 153 (196)
.||.++.
T Consensus 101 ~GVi~lk 107 (109)
T PRK10650 101 AGMVMIK 107 (109)
T ss_pred HHHHHhc
Confidence 9998774
No 8
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=94.32 E-value=0.11 Score=40.74 Aligned_cols=72 Identities=13% Similarity=0.289 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhheeeeccccC
Q 029288 80 VAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATRE 157 (196)
Q Consensus 80 ~lv~t~i~Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV~lLs~~~~ 157 (196)
..+++...=+..|.+|++.-+-++.+|+.=..=+..+.+.|.++|+| ..++.+ .+|+.+++.||.++....+
T Consensus 35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E--~~s~~~----~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDE--SLSLMK----IAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCC--CCCHHH----HHHHHHHHHHHHHhhcCCC
Confidence 34455666688999999998888777764444455566678999998 345544 4788899999999865443
No 9
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=91.46 E-value=0.51 Score=40.71 Aligned_cols=74 Identities=18% Similarity=0.301 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhheeeecc
Q 029288 75 WFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHA 154 (196)
Q Consensus 75 y~~l~~lv~t~i~Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV~lLs~ 154 (196)
|..++........-...+++|+++-|++...|+.|.. -..+.+-|.++++| +.+..+++ |..+.+.|+.++..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~-p~~~~l~~~~~~~e--~~~~~~~~----g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 63 WLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSS-PLLVAIWATLTLGE--TLSPLAWL----GILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhh-HHHHHHHHHHHHcC--CCCHHHHH----HHHHHHHHHHHHhc
Confidence 4344444445667777899999999999999999987 77777778899997 45777764 66667788888765
Q ss_pred c
Q 029288 155 T 155 (196)
Q Consensus 155 ~ 155 (196)
.
T Consensus 136 ~ 136 (281)
T TIGR03340 136 S 136 (281)
T ss_pred c
Confidence 3
No 10
>COG2510 Predicted membrane protein [Function unknown]
Probab=91.36 E-value=1.4 Score=35.68 Aligned_cols=84 Identities=20% Similarity=0.328 Sum_probs=53.5
Q ss_pred HccCCCccc---hhHHHH--HHHHHHHHHHHHHHHHHHHhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHH
Q 029288 62 TLDGISQIA---YPQTWF--FLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIA 136 (196)
Q Consensus 62 t~~g~nqf~---~~~ty~--~l~~lv~t~i~Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~ 136 (196)
...|+-|-. .+-.|. .+-.+...+--+.+| +||+..+++.|+|+-=.. -..+++=|.++.+| +++..++
T Consensus 51 ~~~g~~~~~~~~~~k~~lflilSGla~glswl~Yf--~ALk~G~as~VvPldk~s-vvl~~lls~lfL~E--~ls~~~~- 124 (140)
T COG2510 51 LVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLYF--RALKKGKASRVVPLDKTS-VVLAVLLSILFLGE--RLSLPTW- 124 (140)
T ss_pred HhcCceecccccCcceehhhhHHHHHHHHHHHHHH--HHHhcCCcceEEEccccc-HHHHHHHHHHHhcC--CCCHHHH-
Confidence 344554433 344443 344433333333343 899999999999986432 23345557888887 4555544
Q ss_pred HHHHHHHHHhhheeeecc
Q 029288 137 SEICGFITVLSGTIILHA 154 (196)
Q Consensus 137 ~~~~G~~ii~~GV~lLs~ 154 (196)
.|+..+.+|+.+++.
T Consensus 125 ---iG~~LI~~Gailvs~ 139 (140)
T COG2510 125 ---IGIVLIVIGAILVSL 139 (140)
T ss_pred ---HHHHHHHhCeeeEec
Confidence 788999999999875
No 11
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=91.10 E-value=0.8 Score=33.81 Aligned_cols=68 Identities=12% Similarity=0.074 Sum_probs=32.2
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHH
Q 029288 66 ISQIAYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASE 138 (196)
Q Consensus 66 ~nqf~~~~ty~~l~~lv~t~i~Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~ 138 (196)
.+.++++..++. .+.+-..-..++.+|+++-|.++.+|+.-..=+..+.+.|..+|+| ..++.++++.
T Consensus 23 s~g~~~~~~~~~---~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E--~~s~~~~~gi 90 (93)
T PF00893_consen 23 SHGFTQLIPTIL---AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGE--SLSLSKWLGI 90 (93)
T ss_dssp -----------H---HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH----------HHHH
T ss_pred HHhhcchhhHHH---HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCC--CCCHHHHhhe
Confidence 345666655543 3335566678999999999999999988777777788889999998 5567776544
No 12
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=87.58 E-value=0.92 Score=35.14 Aligned_cols=76 Identities=20% Similarity=0.284 Sum_probs=51.7
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeccceeehhHHHHh----hhhhhhhcccCCCChhhHHHHHHHH
Q 029288 67 SQIAYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTI----IASAIMFKDWSGQDVSGIASEICGF 142 (196)
Q Consensus 67 nqf~~~~ty~~l~~lv~t~i~Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~I----i~g~I~f~E~~~~~~~~i~~~~~G~ 142 (196)
+.|+++..++ .++++...-..+|-+|+|.=|-. +-|..|+-..+ +.|.++|+| ..++.+ +.|+
T Consensus 25 ~gf~~~~~~i---l~~v~~~~sf~~Ls~alk~ipvg----vAYAiW~GiG~v~~~l~g~~~f~E--~l~~~~----~~gl 91 (106)
T COG2076 25 DGFTRLWPSI---LTIVGYGLSFYLLSLALKTIPLG----VAYAIWTGIGIVGTALVGVLLFGE--SLSLIK----LLGL 91 (106)
T ss_pred hcccccchHH---HHHHHHHHHHHHHHHHHhhCchH----HHHHHHHHHHHHHHHHHHHHhcCC--cCCHHH----HHHH
Confidence 3456565555 44456666788999999986654 45666665554 558999998 344544 4678
Q ss_pred HHHhhheeeeccc
Q 029288 143 ITVLSGTIILHAT 155 (196)
Q Consensus 143 ~ii~~GV~lLs~~ 155 (196)
.+++.||..|...
T Consensus 92 ~LiiaGvi~Lk~~ 104 (106)
T COG2076 92 ALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHhhhc
Confidence 8899999887643
No 13
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=86.46 E-value=3.4 Score=35.58 Aligned_cols=66 Identities=9% Similarity=0.145 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhheeee
Q 029288 79 TVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIIL 152 (196)
Q Consensus 79 ~~lv~t~i~Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV~lL 152 (196)
...+.+++ -....|+|+++.+++.+.|..|.. -..+++-|.++++|- .++. -..|..+++.|+.++
T Consensus 216 ~~~~~s~l-~~~l~~~al~~~~a~~~~~~~~l~-pv~a~l~g~~~lgE~--~~~~----~~iG~~lil~Gv~l~ 281 (281)
T TIGR03340 216 LGGLMIGG-AYALVLWAMTRLPVATVVALRNTS-IVFAVVLGIWFLNER--WYLT----RLMGVCIIVAGLVVL 281 (281)
T ss_pred HHHHHHHH-HHHHHHHHHhhCCceEEEeecccH-HHHHHHHHHHHhCCC--ccHH----HHHHHHHHHHhHHhC
Confidence 33333444 444678999999999999999875 566777788889983 3333 456777888888764
No 14
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=85.79 E-value=7.1 Score=34.76 Aligned_cols=92 Identities=10% Similarity=0.231 Sum_probs=62.3
Q ss_pred CCccc-hhHHHHH-HHHHHHHHHHHHHHHHHHhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHH
Q 029288 66 ISQIA-YPQTWFF-LTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFI 143 (196)
Q Consensus 66 ~nqf~-~~~ty~~-l~~lv~t~i~Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ 143 (196)
.+++. ++..|+. ++.=+.-++.|+.-. ++.+.-.-+.-.|+-=.+=-..+.+-|.++|+||++ ..+.+.=+.++.
T Consensus 35 ~p~~~~~~~~~~~~~lsG~~W~iGq~~qf-~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~--~~~~~~G~~Al~ 111 (269)
T PF06800_consen 35 QPAFSMSGTSFIVAFLSGAFWAIGQIGQF-KSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTT--TTQKIIGFLALV 111 (269)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCC--cchHHHHHHHHH
Confidence 34554 2344433 333344566676554 577777888889988666666777889999999996 445555566889
Q ss_pred HHhhheeeeccccCCCC
Q 029288 144 TVLSGTIILHATREHEQ 160 (196)
Q Consensus 144 ii~~GV~lLs~~~~~~~ 160 (196)
++++|+.+-+.+++++.
T Consensus 112 liiiGv~lts~~~~~~~ 128 (269)
T PF06800_consen 112 LIIIGVILTSYQDKKSD 128 (269)
T ss_pred HHHHHHHHhcccccccc
Confidence 99999987665544443
No 15
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=85.26 E-value=0.86 Score=33.03 Aligned_cols=61 Identities=20% Similarity=0.304 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhheeee
Q 029288 85 VVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIIL 152 (196)
Q Consensus 85 ~i~Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV~lL 152 (196)
...-....++|+++-+++.+.++.+ .-...+.+.|.++++|- .++. -..|+.+++.|+.++
T Consensus 64 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~pv~~~i~~~~~~~e~--~~~~----~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 64 TALAYLLYFYALKYISASIVSILQY-LSPVFAAILGWLFLGER--PSWR----QIIGIILIIIGVVLI 124 (126)
T ss_pred eehHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHHHcCCC--CCHH----HHHHHHHHHHHHHHH
Confidence 3455667799999999999999998 67788888889999884 3444 446677777777664
No 16
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=85.25 E-value=1.7 Score=39.63 Aligned_cols=63 Identities=11% Similarity=0.102 Sum_probs=45.1
Q ss_pred HHHHHhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhheeeeccccCCCC
Q 029288 91 YLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATREHEQ 160 (196)
Q Consensus 91 yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV~lLs~~~~~~~ 160 (196)
.-|+++++-+++.+.+..|. =-.++.+.|.++++| ..++.+ ++|+.+++.|+++.++.|.+|.
T Consensus 272 lw~~~v~~~ga~~as~~~~L-~PV~a~llg~l~LgE--~lt~~~----~iG~~LIl~Gv~l~~~~~~~~~ 334 (358)
T PLN00411 272 IHSWTVRHKGPLYLAIFKPL-SILIAVVMGAIFLND--SLYLGC----LIGGILITLGFYAVMWGKANEE 334 (358)
T ss_pred HHHHHHhccCchHHHHHHhH-HHHHHHHHHHHHhCC--CCcHHH----HHHHHHHHHHHHHHHhhhhhhh
Confidence 48999999998876554443 344577778888887 345544 4788999999999886555543
No 17
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=84.08 E-value=1.8 Score=32.47 Aligned_cols=65 Identities=17% Similarity=0.214 Sum_probs=47.9
Q ss_pred HHHHHHHHHhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhheeeeccccCCC
Q 029288 87 TQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATREHE 159 (196)
Q Consensus 87 ~Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV~lLs~~~~~~ 159 (196)
...-..+.|+++-+ ..+.|+++ .....+.+.|.++|+| +.++.++ .|..++.+||.++...+...
T Consensus 47 ~~~~~~~~a~~~~~-~~v~~i~~-~~pi~~~ll~~~~~~e--r~~~~~~----~a~~l~~~Gv~li~~~~~~~ 111 (113)
T PF13536_consen 47 VAYLLFFYALSYAP-ALVAAIFS-LSPIFTALLSWLFFKE--RLSPRRW----LAILLILIGVILIAWSDLTG 111 (113)
T ss_pred HHHHHHHHHHHhCc-HHHHHHHH-HHHHHHHHHHHHHhcC--CCCHHHH----HHHHHHHHHHHHHhhhhccc
Confidence 44556678888888 46666555 5888888899999997 6666654 57788889999988665443
No 18
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=82.59 E-value=5.7 Score=34.78 Aligned_cols=72 Identities=14% Similarity=0.248 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhheeeeccccCCC
Q 029288 85 VVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATREHE 159 (196)
Q Consensus 85 ~i~Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV~lLs~~~~~~ 159 (196)
++.|+-| -.|.+.=+-+.-.|++++.=-+.+.+.|.++|+|+. +..+......|++++++|+++++..++++
T Consensus 70 ~ig~~~~-~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~--t~~~~~~~~~g~~l~l~G~~l~~~~~~~~ 141 (290)
T TIGR00776 70 ALGQINQ-FKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWS--TSIQTLLGLLALILIIIGVYLTSRSKDKS 141 (290)
T ss_pred HhhhhhH-HHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhcc--chHHHHHHHHHHHHHHHhHheEEeccccc
Confidence 3344443 345555556666777775554567788999999987 56677778999999999999998776443
No 19
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=82.41 E-value=8.6 Score=31.99 Aligned_cols=71 Identities=8% Similarity=0.187 Sum_probs=47.1
Q ss_pred hhHHH--HHHHHHHHHHHHHHHHHHHHhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhh
Q 029288 71 YPQTW--FFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSG 148 (196)
Q Consensus 71 ~~~ty--~~l~~lv~t~i~Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~G 148 (196)
.+..| ++....+.+.+.+.-| ++|+++-+++.+.++.| .-...+.+-|.++++| ..++.++ .|..+++.|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~s~~~~-~~pv~~~ll~~~~~~E--~~~~~~~----~G~~li~~g 258 (260)
T TIGR00950 187 LSLQWGALLYLGLIGTALAYFLW-NKGLTLVDPSAASILAL-AEPLVALLLGLLILGE--TLSLPQL----IGGALIIAA 258 (260)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCchHHHHHHH-HHHHHHHHHHHHHhCC--CCCHHHH----HHHHHHHHh
Confidence 34455 3344444455555544 99999999999988887 4556666777888888 4455554 566666666
Q ss_pred e
Q 029288 149 T 149 (196)
Q Consensus 149 V 149 (196)
+
T Consensus 259 ~ 259 (260)
T TIGR00950 259 V 259 (260)
T ss_pred c
Confidence 5
No 20
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=81.59 E-value=3.5 Score=32.40 Aligned_cols=19 Identities=37% Similarity=0.553 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHhhheeee
Q 029288 134 GIASEICGFITVLSGTIIL 152 (196)
Q Consensus 134 ~i~~~~~G~~ii~~GV~lL 152 (196)
.+...+.|..+.+.|+.-+
T Consensus 85 ~~~~~i~g~~~~~~G~~~i 103 (136)
T PF08507_consen 85 SILSIIIGLLLFLVGVIYI 103 (136)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555666666665544
No 21
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=79.00 E-value=11 Score=32.76 Aligned_cols=79 Identities=10% Similarity=0.047 Sum_probs=53.0
Q ss_pred hhHHHHH-HHHHHHHHHHHHHHHHHHhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhhe
Q 029288 71 YPQTWFF-LTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGT 149 (196)
Q Consensus 71 ~~~ty~~-l~~lv~t~i~Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV 149 (196)
++..|.. +..-+++.+.+....|+++++-+++.+.+..|.- ...+.+-|.++++|- .++.+ ..|..+++.|+
T Consensus 204 ~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~-Pv~a~l~~~l~lgE~--~~~~~----~iG~~lIl~~~ 276 (293)
T PRK10532 204 HWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSME-PALAAVSGMIFLGET--LTLIQ----WLALGAIIAAS 276 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhH-HHHHHHHHHHHhCCC--CcHHH----HHHHHHHHHHH
Confidence 4455532 3344455667777889999999999888777654 455666777888883 44544 46777777777
Q ss_pred eeecccc
Q 029288 150 IILHATR 156 (196)
Q Consensus 150 ~lLs~~~ 156 (196)
.+.+..+
T Consensus 277 ~~~~~~~ 283 (293)
T PRK10532 277 MGSTLTI 283 (293)
T ss_pred HHHHhcC
Confidence 7776444
No 22
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=78.24 E-value=14 Score=33.76 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=28.4
Q ss_pred HHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhheeeeccccCCCC
Q 029288 114 TLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATREHEQ 160 (196)
Q Consensus 114 ~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV~lLs~~~~~~~ 160 (196)
..+++.+..+|++- .++ ..+.|+.++++|+++.+...+++.
T Consensus 271 ~~ali~~i~~f~~~--~~~----ly~~af~lIiiG~vvy~~~~~~~~ 311 (334)
T PF06027_consen 271 FYALIIDIFFFGYK--FSW----LYILAFALIIIGFVVYNLAESPEE 311 (334)
T ss_pred HHHHHHHHHhcCcc--ccH----HHHHHHHHHHHHhheEEccCCccc
Confidence 34566678888762 333 367889999999999886655543
No 23
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=74.03 E-value=2.8 Score=37.42 Aligned_cols=70 Identities=17% Similarity=0.279 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhheeeeccccCC
Q 029288 85 VVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATREH 158 (196)
Q Consensus 85 ~i~Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV~lLs~~~~~ 158 (196)
.+.|++-+ ||.+.-.-+.-.|+--.+==..+-+-|.+.|+||+. +.+.+.=......+++|+++=+ .+|+
T Consensus 70 s~GQ~~Qf-ka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t--~~~~IlG~iAliliviG~~lTs-~~~~ 139 (288)
T COG4975 70 SFGQANQF-KAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTT--PTQIILGFIALILIVIGIYLTS-KQDR 139 (288)
T ss_pred hhhhhhhh-hheeeeeeeccccccchhhHhhceeeeEEEEeccCc--chhHHHHHHHHHHHHHhheEee-eecc
Confidence 56688776 578888888888987776667777789999999985 5566656667788999999855 4444
No 24
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=65.52 E-value=11 Score=33.03 Aligned_cols=68 Identities=7% Similarity=0.058 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhc-cccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhheeeecccc
Q 029288 86 VTQLNYLNKALD-TFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATR 156 (196)
Q Consensus 86 i~Qi~yLNkAL~-~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV~lLs~~~ 156 (196)
..+.-...++++ +=.++.-.++-+.- -..+.+.|..+++|-. ++.|+....+|+.+++.|+.++...|
T Consensus 222 ~ia~~~y~~~~~~~~~~~~~~~ls~~~-pvia~~~~v~~l~E~~--~~~~~~~~~iG~~lIi~~~~l~~~~~ 290 (290)
T TIGR00776 222 GIGNFFYLFSAQPKVGVATSFSLSQLG-VIISTLGGILILGEKK--TKREMIAISVGIILIIIAANILGIGK 290 (290)
T ss_pred HHHHHHHHHHcccccchhhHHHHHHHH-HHHHHHHHHHHhccCC--CcceeehhHHHHHHHHHHHHHHhccC
Confidence 444545556666 33333333333333 6667778888888854 78899999999999999999886543
No 25
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=62.22 E-value=27 Score=30.15 Aligned_cols=66 Identities=8% Similarity=0.082 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhheeeeccccC
Q 029288 85 VVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATRE 157 (196)
Q Consensus 85 ~i~Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV~lLs~~~~ 157 (196)
.+.-....|+++++-+++.+.++.|.- =..+.+-|.++++|- .++. -+.|+.+++.|+++++..+.
T Consensus 223 s~~~~~l~~~~~~~~~~~~~s~~~~l~-Pi~a~i~~~~~l~E~--~t~~----~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 223 SIIAISAYMYLLRNVRPALATSYAYVN-PVVAVLLGTGLGGET--LSPI----EWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHH-HHHHHHHHHHHcCCC--CcHH----HHHHHHHHHHHHHHHHHHHh
Confidence 344456778999999988888775544 344555667788873 4444 45788899999999876443
No 26
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=59.83 E-value=15 Score=28.69 Aligned_cols=54 Identities=11% Similarity=0.158 Sum_probs=44.0
Q ss_pred HHHhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhheeee
Q 029288 93 NKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIIL 152 (196)
Q Consensus 93 NkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV~lL 152 (196)
.-.|...|=++.+|+-...-=.++.++|..+.+|..+ .. -..|+..++.||.+.
T Consensus 59 ~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~--~~----~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 59 FLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVIS--RR----TWLGMALILAGVALC 112 (113)
T ss_pred HHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccc--hh----HHHHHHHHHcCeeee
Confidence 3468889999999999888888899999999988643 22 368999999999874
No 27
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=58.39 E-value=24 Score=30.62 Aligned_cols=68 Identities=12% Similarity=0.214 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhheeeecccc
Q 029288 82 AVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATR 156 (196)
Q Consensus 82 v~t~i~Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV~lLs~~~ 156 (196)
+.+.+.+....|+++++.+++.+.++.+ +-=..+++-|.++++|- .++. ...|..+++.|+++....+
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~-l~Pv~a~~~~~l~lgE~--~~~~----~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSL-LVPVVGLASAALLLDER--LTGL----QFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHhCCC--ccHH----HHHHHHHHHHHHHHHhcch
Confidence 4556667777899999999988777654 33556777888899883 3444 3578888889998765433
No 28
>PRK11689 aromatic amino acid exporter; Provisional
Probab=56.90 E-value=20 Score=31.18 Aligned_cols=64 Identities=14% Similarity=0.137 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhheeeecc
Q 029288 83 VCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHA 154 (196)
Q Consensus 83 ~t~i~Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV~lLs~ 154 (196)
.+++.+.-| |+|+++-+++.+.+..|. --..+++-|.++++|- .++. ...|+.+++.|+++...
T Consensus 224 ~t~~~~~l~-~~al~~~~a~~~s~~~~l-~Pv~a~i~~~~~lgE~--~~~~----~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 224 AMGFGYAAW-NVGILHGNMTLLATASYF-TPVLSAALAALLLSTP--LSFS----FWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHH-HHHHHccCHHHHHHHHHh-HHHHHHHHHHHHhCCC--CcHH----HHHHHHHHHHhHHHHhh
Confidence 455555555 999999999877766654 3445777788888882 3444 55788889999877643
No 29
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=51.97 E-value=73 Score=26.18 Aligned_cols=61 Identities=11% Similarity=0.182 Sum_probs=42.9
Q ss_pred HHHHHHHHhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhheeeeccc
Q 029288 88 QLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHAT 155 (196)
Q Consensus 88 Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV~lLs~~ 155 (196)
-....+++++.-+++.+.|.. ..-...+++-+.++++|- .+.. -..|..+++.|+.+....
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~l~~~e~--~~~~----~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 228 AYLLWYYALRLLGASLVALLS-LLEPVFAALLGVLLLGEP--LSPA----QLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHhcCchHHHHHH-HHHHHHHHHHHHHHhCCC--CcHH----HHHHHHHHHHHHHHHhcc
Confidence 445568999999999999887 334444555678888873 2343 345668888888887755
No 30
>PF07457 DUF1516: Protein of unknown function (DUF1516); InterPro: IPR010899 This family contains a number of hypothetical bacterial proteins of unknown function approximately 120 residues long.
Probab=51.38 E-value=65 Score=24.86 Aligned_cols=82 Identities=13% Similarity=0.207 Sum_probs=48.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeccce---eehhHHHHhhhhhhhhc-ccCCCChhhHHHHHHHHHHH
Q 029288 70 AYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVY---YVMFTTLTIIASAIMFK-DWSGQDVSGIASEICGFITV 145 (196)
Q Consensus 70 ~~~~ty~~l~~lv~t~i~Qi~yLNkAL~~fdt~~V~Pvy---yv~fT~~~Ii~g~I~f~-E~~~~~~~~i~~~~~G~~ii 145 (196)
.|-.+|++++++...+.. +++. .++....|.. -++|-. .+++|..++. ++.+.+...++-.++|..++
T Consensus 5 ~Hi~sWvl~iIlf~~a~~----~~~~---g~~k~~k~~~MilRl~Yll-iiisG~~L~~~~~~~~~~l~~iK~l~gl~vI 76 (110)
T PF07457_consen 5 IHITSWVLLIILFIVAYF----LYSK---GKTKKAKILHMILRLFYLL-IIISGVWLFIRTFAGNPMLYIIKMLLGLIVI 76 (110)
T ss_pred HHHHHHHHHHHHHHHHHH----HHhc---ccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 477889887777666553 1111 1111222221 133444 4555555554 59999999999999999887
Q ss_pred hhheeeeccccCCC
Q 029288 146 LSGTIILHATREHE 159 (196)
Q Consensus 146 ~~GV~lLs~~~~~~ 159 (196)
-.-=..++++|+.+
T Consensus 77 ~lmEm~l~rkkk~k 90 (110)
T PF07457_consen 77 GLMEMALARKKKGK 90 (110)
T ss_pred HHHHHHHHHHHcCC
Confidence 76656666555543
No 31
>PRK13499 rhamnose-proton symporter; Provisional
Probab=50.98 E-value=11 Score=34.70 Aligned_cols=41 Identities=12% Similarity=0.222 Sum_probs=33.7
Q ss_pred HHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhheeeeccc
Q 029288 114 TLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHAT 155 (196)
Q Consensus 114 ~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV~lLs~~ 155 (196)
..+.+.|+ +.+||++.+........+|+.+++.|..++...
T Consensus 302 iistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 302 LCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred HHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 33445566 599999999999999999999999999887643
No 32
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=50.00 E-value=27 Score=29.40 Aligned_cols=19 Identities=0% Similarity=-0.164 Sum_probs=11.7
Q ss_pred eeeccceeehhHHHHhhhh
Q 029288 102 AIVSPVYYVMFTTLTIIAS 120 (196)
Q Consensus 102 ~~V~Pvyyv~fT~~~Ii~g 120 (196)
....-+.....+...+++.
T Consensus 118 ~~~~~~~~~~~~~g~~~~~ 136 (379)
T TIGR00881 118 GTWVSFWNCSHNVGGGLLP 136 (379)
T ss_pred eeeEeehhccchhHHHHHH
Confidence 4455566666666666665
No 33
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=48.05 E-value=35 Score=29.76 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=47.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhhe
Q 029288 70 AYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGT 149 (196)
Q Consensus 70 ~~~~ty~~l~~lv~t~i~Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV 149 (196)
.||..+..++....+...=..+.+.-.+.+++....=+- ..=...+++-|.++|+ +.+++.+++ |..+++.|+
T Consensus 220 ~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~-t~Rk~~sillS~~~f~--~~~~~~~~~----G~~lv~~g~ 292 (303)
T PF08449_consen 220 AHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVT-TLRKFLSILLSVIIFG--HPLSPLQWI----GIVLVFAGI 292 (303)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHH-HHHHHHHHHHHHHhcC--CcCChHHHH----HHHHhHHHH
Confidence 556665555555555443334557777887776544332 1123456777889997 478888774 555677777
Q ss_pred eeecccc
Q 029288 150 IILHATR 156 (196)
Q Consensus 150 ~lLs~~~ 156 (196)
.+=+..|
T Consensus 293 ~~~~~~~ 299 (303)
T PF08449_consen 293 FLYSYAK 299 (303)
T ss_pred HHHHHhh
Confidence 6644333
No 34
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=44.39 E-value=50 Score=27.20 Aligned_cols=71 Identities=14% Similarity=0.170 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhheeeeccccCCCC
Q 029288 84 CVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATREHEQ 160 (196)
Q Consensus 84 t~i~Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV~lLs~~~~~~~ 160 (196)
....-....+.+++.-+.+...++++..=....+++..++++| +.+..++ .|..+.+.|+.++......+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e--~~~~~~~----~~~~~~~~Gv~lv~~~~~~~~ 149 (292)
T COG0697 79 GLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGE--RLSLLQI----LGILLALAGVLLILLGGGGGG 149 (292)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccC--CCcHHHH----HHHHHHHHhHHheecCCCcch
Confidence 3333444456678888888888888877777777777677787 3455544 447778899999987666543
No 35
>PRK13499 rhamnose-proton symporter; Provisional
Probab=41.38 E-value=52 Score=30.29 Aligned_cols=71 Identities=10% Similarity=0.130 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHhccccceeeccceeehhHHHHhhhhhhhhcccC-CCChhhHHHHHHHHHHHhhheeeecc
Q 029288 83 VCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWS-GQDVSGIASEICGFITVLSGTIILHA 154 (196)
Q Consensus 83 ~t~i~Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~-~~~~~~i~~~~~G~~ii~~GV~lLs~ 154 (196)
.-++.|+.+. ++.++---+.-.|+--.+=...+.+-+.++++||+ .++..+....+.|++++++|+.+-+.
T Consensus 82 ~W~iG~i~~~-~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 82 LWGIGGITYG-LTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred HHHhhhhhHH-HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 3455666553 55666666667777766666667777889999998 22344445588999999999999876
No 36
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=40.76 E-value=25 Score=25.42 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=40.4
Q ss_pred ceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhhe
Q 029288 101 AAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGT 149 (196)
Q Consensus 101 t~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV 149 (196)
...+.|+-|++-.++=++.+..-|.+-.+-++..++..+.|+...+.|.
T Consensus 13 ~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~~p~~~l~~i~~~~~~~~G~ 61 (76)
T PF11970_consen 13 SMFIYPLVYIVLWLFPFAAHRMQYMYEIGHGPSFWLFCIAGFMQPSQGF 61 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHccCH
Confidence 3567899999888888888888888767778888888888988888874
No 37
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=40.69 E-value=53 Score=28.48 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhccccceeeccceeehhHHHHhhhhhhhhccc
Q 029288 83 VCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDW 127 (196)
Q Consensus 83 ~t~i~Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~ 127 (196)
.+++.|. ..|+|+++.+++.+.|..|.-=.. +++-|.++++|-
T Consensus 222 ~t~i~~~-~~~~a~~~~~a~~~s~~~~l~Pv~-a~~~g~l~l~E~ 264 (296)
T PRK15430 222 VTTVPLL-CFTAAATRLRLSTLGFFQYIGPTL-MFLLAVTFYGEK 264 (296)
T ss_pred HHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHH-HHHHHHHHHcCC
Confidence 5667776 889999999999988888765544 556677888883
No 38
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.82 E-value=72 Score=29.46 Aligned_cols=111 Identities=22% Similarity=0.239 Sum_probs=72.2
Q ss_pred eeec--cccccchhhhHHHHHHHHHHc-cCCC---ccchhHHHHHHHHHHHHHHHHHHHHHH-Hhccccceeeccceeeh
Q 029288 39 GICS--LMGSLTVVSIKAIGIAIKLTL-DGIS---QIAYPQTWFFLTVAAVCVVTQLNYLNK-ALDTFNAAIVSPVYYVM 111 (196)
Q Consensus 39 ~ics--l~Gs~tVl~~K~~~~ll~~t~-~g~n---qf~~~~ty~~l~~lv~t~i~Qi~yLNk-AL~~fdt~~V~Pvyyv~ 111 (196)
+++| .+|+..-+-=|+.-.+-.... .|+. -+++|.-|. ++...++.++ .|= |-..-.+++|+|+-=..
T Consensus 26 aissS~~Ig~sfilkKkgl~r~~~~~~ra~~gg~~yl~~~~Ww~---G~ltm~vGei--~NFaAYaFAPasLVtPLGAls 100 (335)
T KOG2922|consen 26 AISSSIFIGSSFILKKKGLKRAGASGLRAGEGGYGYLKEPLWWA---GMLTMIVGEI--ANFAAYAFAPASLVTPLGALS 100 (335)
T ss_pred hhhccEEEeeehhhhHHHHHHHhhhcccccCCCcchhhhHHHHH---HHHHHHHHhH--hhHHHHhhchHhhhccchhHH
Confidence 4444 677766676677644433222 2332 355555554 4444444443 233 33455788999999999
Q ss_pred hHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhheeeeccccCCCCC
Q 029288 112 FTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATREHEQT 161 (196)
Q Consensus 112 fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV~lLs~~~~~~~~ 161 (196)
.+.+++++..++=+.++ ..=.+||..++.|-.++-.+.+.++.
T Consensus 101 vi~saila~~~L~Ekl~-------~~g~lGc~l~v~Gst~iV~haP~e~~ 143 (335)
T KOG2922|consen 101 VIISAILASFFLKEKLN-------LLGILGCVLCVVGSTTIVIHAPKEQE 143 (335)
T ss_pred HHHHHHHHHHHHHHHHH-------HhhhhheeEEecccEEEEEecCcccc
Confidence 99999999988876654 33468999999999988877766643
No 39
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=38.66 E-value=2.2e+02 Score=26.04 Aligned_cols=64 Identities=17% Similarity=0.267 Sum_probs=44.4
Q ss_pred HHHHHHHH-HHHhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhheeeeccc
Q 029288 85 VVTQLNYL-NKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHAT 155 (196)
Q Consensus 85 ~i~Qi~yL-NkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV~lLs~~ 155 (196)
+-.+-||+ |+|++ |-+...+.+-.+.-+.++.+=|.++.++ ++++.++ .|.++++.|+.++...
T Consensus 88 ~Dv~aN~~~v~a~~-yTsvtS~~lL~~~~i~~~~~LS~~fL~~--ry~~~~~----~gv~i~i~Gv~lv~~s 152 (334)
T PF06027_consen 88 LDVEANYLVVLAYQ-YTSVTSVQLLDCTSIPFVMILSFIFLKR--RYSWFHI----LGVLICIAGVVLVVVS 152 (334)
T ss_pred HHHHHHHHHHHHhh-cccHhHHHhhhhhhhHHHHHHHHHHHHh--hhhHHHH----HHHHHHHhhhhheeee
Confidence 34456665 66665 4455556677777788888889999987 6677766 5677777887776543
No 40
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=38.24 E-value=14 Score=35.40 Aligned_cols=122 Identities=11% Similarity=0.043 Sum_probs=61.1
Q ss_pred HhhccccCccceEEEEeeeccccccchhhhHHHHHHHHHHccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHhccccce
Q 029288 23 LHFEPRCGQTNILVYLGICSLMGSLTVVSIKAIGIAIKLTLDGISQIAYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAA 102 (196)
Q Consensus 23 ~~~~pr~g~~~~~vyv~icsl~Gs~tVl~~K~~~~ll~~t~~g~nqf~~~~ty~~l~~lv~t~i~Qi~yLNkAL~~fdt~ 102 (196)
-..+-|+|||+.+..-.+-+++++.....+|.....-...+ .-.+.-+....+...|.=|+...-=.----
T Consensus 81 ~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~---------GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG 151 (485)
T KOG0569|consen 81 GLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLIL---------GRLIVGLACGLSTGLVPMYLTEISPKNLRG 151 (485)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH---------HHHHHHHHhHHHHHHHHHHHhhcChhhhcc
Confidence 45667999997665445555667776666666543222111 111222233344555666665311111111
Q ss_pred eeccceeehhHHHHhhhhhhhhcccCC-CChhhHHHHHHHHHHHhhheeeec
Q 029288 103 IVSPVYYVMFTTLTIIASAIMFKDWSG-QDVSGIASEICGFITVLSGTIILH 153 (196)
Q Consensus 103 ~V~Pvyyv~fT~~~Ii~g~I~f~E~~~-~~~~~i~~~~~G~~ii~~GV~lLs 153 (196)
.+-....+..++...++..+--++.-+ .+.|.++...-++..++.-+.+..
T Consensus 152 ~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~ 203 (485)
T KOG0569|consen 152 ALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPF 203 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhc
Confidence 222334556666666665665666554 344555555555544444444443
No 41
>PF12271 Chs3p: Chitin synthase III catalytic subunit; InterPro: IPR022057 This family of proteins is found in eukaryotes. Proteins in this family are typically between 288 and 332 amino acids in length. This family is the catalytic domain of chitin synthase III. Chitin is a major component of fungal cell walls and this enzyme is responsible for its formation.
Probab=38.00 E-value=25 Score=31.84 Aligned_cols=116 Identities=12% Similarity=0.212 Sum_probs=67.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhcccc---CccceEEEEeeeccccccchhhhHHHHHHHHHHc-cCC-CccchhHHHH
Q 029288 2 FQSTDFLIYVAATVSVVLALVLHFEPRC---GQTNILVYLGICSLMGSLTVVSIKAIGIAIKLTL-DGI-SQIAYPQTWF 76 (196)
Q Consensus 2 ~~~p~Fl~Y~~~~~~~~~~Li~~~~pr~---g~~~~~vyv~icsl~Gs~tVl~~K~~~~ll~~t~-~g~-nqf~~~~ty~ 76 (196)
+.||+-..-.++.+++.+.|++++..|| |||.+....-+.-+ .++..... .|- ++=..+..|+
T Consensus 50 if~~~~~~~~i~ai~~~~imI~~vr~K~tAVGRkEi~~Ff~ly~~------------~~~~~lv~~~gv~p~~s~~~~~f 117 (293)
T PF12271_consen 50 IFNIGNIFLHIIAIIMTVIMIYHVRRKYTAVGRKEILIFFYLYIL------------LIILELVVDGGVSPPGSSVYPYF 117 (293)
T ss_pred eccHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH------------HHHHHHHHcCCccCCCCCchHHH
Confidence 4678888888888888889999888765 88887553322110 11111111 122 2223334444
Q ss_pred HHHHH-HHHHHHHHHHHHHHhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhheeeeccc
Q 029288 77 FLTVA-AVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHAT 155 (196)
Q Consensus 77 ~l~~l-v~t~i~Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV~lLs~~ 155 (196)
..+=. ++++.. ..=+++|.+=||=|++=|+..+...-...++.++|.+.++..
T Consensus 118 tAi~~g~~~a~~--------------------------w~Ll~Ng~vgfQl~eDGT~~Sl~ll~~ss~~~f~~t~~isl~ 171 (293)
T PF12271_consen 118 TAIQIGLISATC--------------------------WCLLINGFVGFQLWEDGTPLSLWLLRGSSLILFIGTFYISLD 171 (293)
T ss_pred HHHHHHHHHHHH--------------------------HHHHHhhhheeeeccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 31111 111111 122567888888888888888877777777777777776543
No 42
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=36.63 E-value=30 Score=30.84 Aligned_cols=37 Identities=14% Similarity=0.380 Sum_probs=31.0
Q ss_pred HHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhheee
Q 029288 113 TTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTII 151 (196)
Q Consensus 113 T~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV~l 151 (196)
...+.++|+.++||.+ +..++...++|+..++.|..+
T Consensus 232 vvIStlgGI~il~E~K--t~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 232 VVISTLGGIFILKEKK--TKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HHHHHhhhheEEEecC--chhhHHHHHHHHHHHHHhhhc
Confidence 3456778999999987 678899999999999988765
No 43
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=36.10 E-value=56 Score=28.66 Aligned_cols=121 Identities=7% Similarity=0.039 Sum_probs=55.6
Q ss_pred cCccceEEEE---eeeccccccch--hhhHHHHHHHHHHccCCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHhccccce
Q 029288 29 CGQTNILVYL---GICSLMGSLTV--VSIKAIGIAIKLTLDGISQ-IAYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAA 102 (196)
Q Consensus 29 ~g~~~~~vyv---~icsl~Gs~tV--l~~K~~~~ll~~t~~g~nq-f~~~~ty~~l~~lv~t~i~Qi~yLNkAL~~fdt~ 102 (196)
-.+++++.|- .+.+++.+... .+.-.+.+.++....++.. ......++.++.++++.+ -..|..+..+.-++.
T Consensus 67 ~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~~~~esi~~l~~~~~~~~~~~~l~~~~~~~v~~~~-~~~~~~~~~~~~~s~ 145 (299)
T PRK09509 67 ADDEHTFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMNDPGVGIIVTLVALICTLI-LVTFQRWVVRKTQSQ 145 (299)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHHHHHH-HHHHHHHHHHHhCCH
Confidence 4456666665 33444444333 2345556666666665442 221223444444555543 222333322333332
Q ss_pred eecccee----ehhHHHHhhhhhhh-hcccCCCChhhHHHHHHHHHHHhhheeee
Q 029288 103 IVSPVYY----VMFTTLTIIASAIM-FKDWSGQDVSGIASEICGFITVLSGTIIL 152 (196)
Q Consensus 103 ~V~Pvyy----v~fT~~~Ii~g~I~-f~E~~~~~~~~i~~~~~G~~ii~~GV~lL 152 (196)
.+..-.. -.++..+++.|.+. +-+|. -...+.+++.|++++..|.-++
T Consensus 146 ~l~a~~~~~~~D~~~s~~vl~~~~~~~~g~~--~~D~i~aiii~~~il~~~~~i~ 198 (299)
T PRK09509 146 AVRADMLHYQSDVMMNGAILLALGLSWYGWH--RADALFALGIGIYILYSALRMG 198 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 2222111 12333444444432 22332 2445667778888887887765
No 44
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=34.37 E-value=44 Score=28.87 Aligned_cols=58 Identities=14% Similarity=0.174 Sum_probs=35.3
Q ss_pred HHhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhheeeeccccCC
Q 029288 94 KALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATREH 158 (196)
Q Consensus 94 kAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV~lLs~~~~~ 158 (196)
+++++-+++...-. ..+=...+++-|.++++| ..++.+ .+|..+++.|+++.+..|.+
T Consensus 240 ~~l~~~sa~t~sv~-~~l~pv~~~~~~~~~lge--~lt~~~----~~G~~lil~Gv~l~~~~k~~ 297 (302)
T TIGR00817 240 MLLGRVSPLTHSVG-NCMKRVVVIVVSILFFGT--KISPQQ----VFGTGIAIAGVFLYSRVKAQ 297 (302)
T ss_pred HHHccCCchHHHHH-hhhhhhheeeeehhhcCC--CCchhH----HHHHHHHHHHHHHHHHHhcc
Confidence 45555555443333 222234455567888888 355554 46788899999998865543
No 45
>PRK13673 hypothetical protein; Provisional
Probab=33.91 E-value=1.8e+02 Score=22.88 Aligned_cols=83 Identities=11% Similarity=0.120 Sum_probs=45.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeccceeehhHHHHhhhhhhhhccc-CCCChhhHHHHHHHHHHHhhh
Q 029288 70 AYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDW-SGQDVSGIASEICGFITVLSG 148 (196)
Q Consensus 70 ~~~~ty~~l~~lv~t~i~Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~-~~~~~~~i~~~~~G~~ii~~G 148 (196)
.|-.+|++.+++..-+..=.. |+ -+.+. .+-+-.=.|=...+++|+.++.+. .+.+....+-.++|+.++-.-
T Consensus 4 ~Hi~sWvi~iILf~vay~l~s--~~-~~~~k---i~hMilRLfyil~iiTG~~l~~~~~~~~~~l~~~K~l~gi~vIg~m 77 (118)
T PRK13673 4 LHITSWVLAIILFFVAYSLYS--GG-SKKAK---ILHMILRLFYILIIITGFWLLIRSFGSNHMLYILKMLLGIIVIGLM 77 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--cC-Cccch---HHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHH
Confidence 467788876666654422111 11 11111 111111123344666666666554 777777888889999877666
Q ss_pred eeeeccccCC
Q 029288 149 TIILHATREH 158 (196)
Q Consensus 149 V~lLs~~~~~ 158 (196)
=..++++|+.
T Consensus 78 Em~l~r~kk~ 87 (118)
T PRK13673 78 EMSLAKRKKG 87 (118)
T ss_pred HHHHHHHHcC
Confidence 5666655554
No 46
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=33.59 E-value=21 Score=28.51 Aligned_cols=32 Identities=9% Similarity=0.159 Sum_probs=26.2
Q ss_pred hhcccCCCChhhHHHHHHHHHHHhhheeeeccc
Q 029288 123 MFKDWSGQDVSGIASEICGFITVLSGTIILHAT 155 (196)
Q Consensus 123 ~f~E~~~~~~~~i~~~~~G~~ii~~GV~lLs~~ 155 (196)
||+- ++-++|.+.++.+.+++.++|++||.++
T Consensus 26 ~fR~-ED~tpWNysiL~Ls~vvlvi~~~LLgrs 57 (125)
T PF15048_consen 26 FFRV-EDATPWNYSILALSFVVLVISFFLLGRS 57 (125)
T ss_pred heec-CCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 4443 5668999999999999999999999743
No 47
>PRK03557 zinc transporter ZitB; Provisional
Probab=33.30 E-value=2.4e+02 Score=24.97 Aligned_cols=121 Identities=13% Similarity=0.145 Sum_probs=55.4
Q ss_pred CccceEEEE---eeeccccccchh--hhHHHHHHHHHHccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceee
Q 029288 30 GQTNILVYL---GICSLMGSLTVV--SIKAIGIAIKLTLDGISQIAYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIV 104 (196)
Q Consensus 30 g~~~~~vyv---~icsl~Gs~tVl--~~K~~~~ll~~t~~g~nqf~~~~ty~~l~~lv~t~i~Qi~yLNkAL~~fdt~~V 104 (196)
-+++++.|- .+.+++.+...+ +.-.+.+.++....+...-..+..++.+..+++..+. .+++.++-+.=+..+.
T Consensus 76 d~~hpyG~~r~E~l~al~~~~~l~~~~~~i~~eai~~l~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~s~~l~ 154 (312)
T PRK03557 76 TIRHTFGWLRLTTLAAFVNAIALVVITILIVWEAIERFRTPRPVAGGMMMAIAVAGLLANILS-FWLLHHGSEEKNLNVR 154 (312)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHH-HHHHhcccccCCHHHH
Confidence 356666655 334444443333 2333444555444443222222223333333433332 3444443322233222
Q ss_pred cccee----ehhHHHHhhhhhh-hhcccCCCChhhHHHHHHHHHHHhhheeeec
Q 029288 105 SPVYY----VMFTTLTIIASAI-MFKDWSGQDVSGIASEICGFITVLSGTIILH 153 (196)
Q Consensus 105 ~Pvyy----v~fT~~~Ii~g~I-~f~E~~~~~~~~i~~~~~G~~ii~~GV~lLs 153 (196)
..-.. ++-+..+++++.+ .+-+|.- ...+.+++.+++++..|+-++-
T Consensus 155 a~~~h~~~D~l~s~~vlv~~~~~~~~g~~~--~Dpi~~ilis~~i~~~~~~l~~ 206 (312)
T PRK03557 155 AAALHVLGDLLGSVGAIIAALIIIWTGWTP--ADPILSILVSVLVLRSAWRLLK 206 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcc--hhHHHHHHHHHHHHHHHHHHHH
Confidence 21111 2333444555533 3434542 4566788888888888877654
No 48
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=32.13 E-value=1e+02 Score=26.56 Aligned_cols=40 Identities=15% Similarity=0.327 Sum_probs=31.8
Q ss_pred cCCCChhhHHHHHHHHHHHhhheeeeccccCCCCCCCCCC
Q 029288 127 WSGQDVSGIASEICGFITVLSGTIILHATREHEQTTAPVG 166 (196)
Q Consensus 127 ~~~~~~~~i~~~~~G~~ii~~GV~lLs~~~~~~~~~~~~~ 166 (196)
++++++...+.-.+|.++++.|+.++-.-...+-.++|..
T Consensus 166 ~~~~~~e~~l~N~~gl~~~~fg~~V~~~~~~~~~kr~~~~ 205 (214)
T cd08764 166 YSNLPAEGVLGNFIGIVLVIFGGLVVYLVTEPDYKRIELP 205 (214)
T ss_pred cccCChhHHHHHHHHHHHHHHHHHHHHhccCcccCCCCCc
Confidence 6778899999999999999999988877666665555433
No 49
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=32.05 E-value=83 Score=23.44 Aligned_cols=30 Identities=10% Similarity=0.083 Sum_probs=23.6
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 029288 65 GISQIAYPQTWFFLTVAAVCVVTQLNYLNK 94 (196)
Q Consensus 65 g~nqf~~~~ty~~l~~lv~t~i~Qi~yLNk 94 (196)
+..-+.....+++++.++..+++|++|-|.
T Consensus 19 k~~~~s~li~~~LilfviF~~~L~~yy~kt 48 (83)
T PF05814_consen 19 KNEGFSELIITLLILFVIFFCVLQVYYIKT 48 (83)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 333567777888889999999999999764
No 50
>PF08733 PalH: PalH/RIM21; InterPro: IPR014844 PalH (also known as RIM21) is a transmembrane protein required for proteolytic cleavage of Rim101/PacC transcription factors which are activated by C-terminal proteolytic processing. Rim101/PacC family proteins play a key role in pH-dependent responses and PalH has been implicated as a pH sensor [].
Probab=31.04 E-value=84 Score=28.79 Aligned_cols=82 Identities=17% Similarity=0.164 Sum_probs=43.5
Q ss_pred HHHHHhhccccCccceEEEEeeeccccccchhhhHHHHHHHHHHccCCC---ccchh---HHHHHHHHHHHHHHHHHHHH
Q 029288 19 LALVLHFEPRCGQTNILVYLGICSLMGSLTVVSIKAIGIAIKLTLDGIS---QIAYP---QTWFFLTVAAVCVVTQLNYL 92 (196)
Q Consensus 19 ~~Li~~~~pr~g~~~~~vyv~icsl~Gs~tVl~~K~~~~ll~~t~~g~n---qf~~~---~ty~~l~~lv~t~i~Qi~yL 92 (196)
+.++.+..||+++|..+.-++.-----..|+..+|.+..+-++--.|-. ++.+- ....-++-++...++|++.+
T Consensus 100 L~lll~l~P~~~~~~~L~k~~~l~~aI~lti~l~~~~~~~~~q~~~g~~d~~~l~~~v~~~~~~~v~~lis~~~l~l~qv 179 (348)
T PF08733_consen 100 LTLLLFLSPRHNRRPWLLKLAALLSAISLTIFLARSTKVLEEQYYNGYQDAIELQDLVNNSLEYRVIDLISNFFLQLAQV 179 (348)
T ss_pred HHHHHHhccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHhCCcceeeHHHHHHHHHHHHHH
Confidence 4555677899988876664433222235677778887666555443211 11111 01112344445566666666
Q ss_pred HHHhcccc
Q 029288 93 NKALDTFN 100 (196)
Q Consensus 93 NkAL~~fd 100 (196)
.--.++|.
T Consensus 180 qiv~rlF~ 187 (348)
T PF08733_consen 180 QIVIRLFP 187 (348)
T ss_pred HHHHHhhc
Confidence 66555654
No 51
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=30.18 E-value=1.8e+02 Score=24.02 Aligned_cols=61 Identities=11% Similarity=0.080 Sum_probs=42.4
Q ss_pred HHHHHHHHhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhheeeeccc
Q 029288 88 QLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHAT 155 (196)
Q Consensus 88 Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV~lLs~~ 155 (196)
..-..+.|+++=+++...++ +...-..+.+-+.++++| +.+..++ .|+.+.++|+.++...
T Consensus 60 ~~~~~~~a~~~~~~~~~~ii-~~~~P~~~~~~~~l~~~e--~~~~~~~----~gi~i~~~Gv~li~~~ 120 (260)
T TIGR00950 60 FYVLYFVAVKRLPVGEAALL-LYLAPLYVTLLSDLMGKE--RPRKLVL----LAAVLGLAGAVLLLSD 120 (260)
T ss_pred HHHHHHHHHHhcChhhhHHH-HhhhHHHHHHHHHHHccC--CCcHHHH----HHHHHHHHhHHhhccC
Confidence 33456899999877777555 445556666777788886 5677666 4777777888887643
No 52
>PF04276 DUF443: Protein of unknown function (DUF443) ; InterPro: IPR005915 The members of this family share 50 % or greater sequence identity. They are found as eleven tandem genes, arranged head-to-tail, in Staphylococcus aureus (strain COL). Distant full-length homologs are found in a Staphylococcus haemolyticus plasmid and in Bacillus halodurans. The function of these proteins is unknown.
Probab=29.00 E-value=3.4e+02 Score=22.69 Aligned_cols=57 Identities=23% Similarity=0.337 Sum_probs=40.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhc--ccc-------ceeecc----------ceeehhHHHHhhhhhhhh
Q 029288 68 QIAYPQTWFFLTVAAVCVVTQLNYLNKALD--TFN-------AAIVSP----------VYYVMFTTLTIIASAIMF 124 (196)
Q Consensus 68 qf~~~~ty~~l~~lv~t~i~Qi~yLNkAL~--~fd-------t~~V~P----------vyyv~fT~~~Ii~g~I~f 124 (196)
|+....-+++.+...+.++.=-.|+||..+ .++ ...+.| ..|+++...++..-..++
T Consensus 86 ~~~~~i~~~i~~i~~l~v~~l~~~l~kk~k~~i~~~~~~~~~ki~l~P~~~K~~~~~lf~yi~~~~~~i~~~~~fi 161 (199)
T PF04276_consen 86 QSSRIINIIICIIVILGVLILRIYLNKKLKKKIYNRNKNSKQKIILIPETFKNFFKNLFAYIFFLFFSIFLFYMFI 161 (199)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcceEEEEEEcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444434455555555556666788888877 666 467899 778888888888888777
No 53
>PF14018 DUF4234: Domain of unknown function (DUF4234)
Probab=28.84 E-value=1.2e+02 Score=21.06 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc
Q 029288 75 WFFLTVAAVCVVTQLNYLNKALDTFNA 101 (196)
Q Consensus 75 y~~l~~lv~t~i~Qi~yLNkAL~~fdt 101 (196)
..+++.++.|.+.++++++|..+-+|.
T Consensus 5 ~~ilLsiiT~GIY~l~W~y~~~~~~~~ 31 (75)
T PF14018_consen 5 KVILLSIITCGIYGLYWLYKIWKELNQ 31 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577888889888888887776443
No 54
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=28.08 E-value=1.7e+02 Score=25.80 Aligned_cols=50 Identities=16% Similarity=0.138 Sum_probs=30.5
Q ss_pred eehhHHHHhhhhhh-----hhcccCCCChhhHHHHHHHHHHHhhheeeeccccCCC
Q 029288 109 YVMFTTLTIIASAI-----MFKDWSGQDVSGIASEICGFITVLSGTIILHATREHE 159 (196)
Q Consensus 109 yv~fT~~~Ii~g~I-----~f~E~~~~~~~~i~~~~~G~~ii~~GV~lLs~~~~~~ 159 (196)
+-.|.+.+++.|.. +|..-.+ .+..-.+-.+|...+++|..+...-|+++
T Consensus 85 ~liW~s~n~l~Gw~~grfGlFg~~~~-~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 85 MLIWGSVNCLTGWASGRFGLFGLDPQ-VPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred HHHHHHHHHHHHHHHhhceecccccc-ccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 45788888887765 5654333 44455556667777666666665444444
No 55
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=27.65 E-value=1.9e+02 Score=25.05 Aligned_cols=65 Identities=14% Similarity=0.140 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhheeeec
Q 029288 82 AVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILH 153 (196)
Q Consensus 82 v~t~i~Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV~lLs 153 (196)
......+....+.|+++=+.+...-++| ..-..+.+.+.++++| +.+..++++..+| ++|+.++.
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~-~~Pi~v~l~~~~~l~E--~~~~~~~~g~~l~----~~Gv~li~ 144 (296)
T PRK15430 80 AVLIGGNWLLFIWAVNNHHMLEASLGYF-INPLVNIVLGMIFLGE--RFRRMQWLAVILA----ICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHH-HHHHHHHHHHHHHhcC--CCcHHHHHHHHHH----HHHHHHHH
Confidence 3445567788899999988888777766 4566777788888886 6788877655544 45555543
No 56
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=26.49 E-value=70 Score=31.29 Aligned_cols=39 Identities=28% Similarity=0.616 Sum_probs=29.1
Q ss_pred HHHHHHHhccccce--------eeccceeehhH-HHHhhhhhhhhccc
Q 029288 89 LNYLNKALDTFNAA--------IVSPVYYVMFT-TLTIIASAIMFKDW 127 (196)
Q Consensus 89 i~yLNkAL~~fdt~--------~V~Pvyyv~fT-~~~Ii~g~I~f~E~ 127 (196)
+++|---|+++|.. -.+|=+||..| +++++.|.|+.=||
T Consensus 20 ~~~~~~~l~~~~~~~~~~~f~~~ltpkfyvaltgtsslisg~i~ifEW 67 (539)
T PF04184_consen 20 LYFLRAPLRLCENLNAVSVFLNTLTPKFYVALTGTSSLISGLILIFEW 67 (539)
T ss_pred HHHHhcchhccccHHHHHHHHhccCchheeeeccchHHHHHHHHHHHH
Confidence 66776667777653 35788888766 78899999988776
No 57
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=25.62 E-value=68 Score=26.60 Aligned_cols=27 Identities=7% Similarity=0.079 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHhhheeeeccccCC
Q 029288 132 VSGIASEICGFITVLSGTIILHATREH 158 (196)
Q Consensus 132 ~~~i~~~~~G~~ii~~GV~lLs~~~~~ 158 (196)
....+-+++|+..+++.-|++-..|-+
T Consensus 94 l~R~~~Vl~g~s~l~i~yfvir~~R~r 120 (163)
T PF06679_consen 94 LKRALYVLVGLSALAILYFVIRTFRLR 120 (163)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345566777777777766666544433
No 58
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=25.57 E-value=1.6e+02 Score=27.29 Aligned_cols=110 Identities=17% Similarity=0.310 Sum_probs=65.8
Q ss_pred cccccchhhhHHHHHHHH-HHcc--CCCccchh---HHHHHHHHHHHHHHHHHHHHHHHhccccceeeccceeehhHHHH
Q 029288 43 LMGSLTVVSIKAIGIAIK-LTLD--GISQIAYP---QTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLT 116 (196)
Q Consensus 43 l~Gs~tVl~~K~~~~ll~-~t~~--g~nqf~~~---~ty~~l~~lv~t~i~Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~ 116 (196)
+.|+++.-..=++-...+ .+.+ +|.....+ .-|++.+..-+.=-.|..+.-++=..-.+. --.+-++.+..+.
T Consensus 221 ~~GGf~tN~~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~-~~~~sW~i~ma~~ 299 (344)
T PF06379_consen 221 LWGGFITNLIYCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGAS-GPFSSWAIHMALI 299 (344)
T ss_pred hhhHHHHHHHHHHHHHhhcCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cccHHHHHHHHHH
Confidence 566666666666554443 2222 23222222 235655555555567888888876555433 1111233333333
Q ss_pred hhh---hhhhhcccCCCChhhHHHHHHHHHHHhhheeeec
Q 029288 117 IIA---SAIMFKDWSGQDVSGIASEICGFITVLSGTIILH 153 (196)
Q Consensus 117 Ii~---g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV~lLs 153 (196)
++. -.+..+||++.+....-...+|+.+++..+.++.
T Consensus 300 vl~snvwGl~lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG 339 (344)
T PF06379_consen 300 VLFSNVWGLILKEWKGASKKTIRVLVLGIAVLILSVVIVG 339 (344)
T ss_pred HHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 333 2467899999999988899999999998877653
No 59
>PF14851 FAM176: FAM176 family
Probab=25.20 E-value=1.2e+02 Score=25.02 Aligned_cols=6 Identities=0% Similarity=-0.224 Sum_probs=2.4
Q ss_pred ceeeec
Q 029288 185 LITIHN 190 (196)
Q Consensus 185 ~~~~~~ 190 (196)
+.+.++
T Consensus 86 dss~~~ 91 (153)
T PF14851_consen 86 DSSFPR 91 (153)
T ss_pred cccccc
Confidence 334443
No 60
>TIGR00893 2A0114 d-galactonate transporter.
Probab=24.79 E-value=80 Score=26.38 Aligned_cols=13 Identities=23% Similarity=0.312 Sum_probs=9.3
Q ss_pred hhccccCccceEE
Q 029288 24 HFEPRCGQTNILV 36 (196)
Q Consensus 24 ~~~pr~g~~~~~v 36 (196)
+...|+|||+.+.
T Consensus 51 ~l~d~~g~r~~~~ 63 (399)
T TIGR00893 51 WLLDRFGARKTLA 63 (399)
T ss_pred HHHHhcCcceeeH
Confidence 4556899988654
No 61
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=24.29 E-value=38 Score=22.92 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=21.1
Q ss_pred ChhhHHHHHHHHHHHhhheeeeccccC
Q 029288 131 DVSGIASEICGFITVLSGTIILHATRE 157 (196)
Q Consensus 131 ~~~~i~~~~~G~~ii~~GV~lLs~~~~ 157 (196)
...++.+.+++-++.++|+.++.+.|=
T Consensus 12 ~tLrigGLi~A~vlfi~Gi~iils~kc 38 (50)
T PF02038_consen 12 ETLRIGGLIFAGVLFILGILIILSGKC 38 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTHH
T ss_pred hHhhccchHHHHHHHHHHHHHHHcCcc
Confidence 356788888888888999888776553
No 62
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=23.30 E-value=64 Score=24.98 Aligned_cols=6 Identities=17% Similarity=0.063 Sum_probs=2.3
Q ss_pred hhcccc
Q 029288 24 HFEPRC 29 (196)
Q Consensus 24 ~~~pr~ 29 (196)
....|+
T Consensus 21 ~~~rRR 26 (130)
T PF12273_consen 21 CHNRRR 26 (130)
T ss_pred HHHHHH
Confidence 333333
No 63
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=22.59 E-value=54 Score=28.14 Aligned_cols=61 Identities=11% Similarity=0.053 Sum_probs=26.6
Q ss_pred EeeeccccccchhhhHHHHHHHHHHccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 029288 38 LGICSLMGSLTVVSIKAIGIAIKLTLDGISQIAYPQTWFFLTVAAVCVVTQLNYLNKALDT 98 (196)
Q Consensus 38 v~icsl~Gs~tVl~~K~~~~ll~~t~~g~nqf~~~~ty~~l~~lv~t~i~Qi~yLNkAL~~ 98 (196)
+.+|+++|++.....=..+......-.....+..+..+...++.+++.+....++.++.+.
T Consensus 15 illg~~iGg~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~k~ 75 (248)
T PF11368_consen 15 ILLGGLIGGFIGFFIGRIGNLLDNISFSTFFNIPWISFIALLIIIILFLLTFYFIYKSRKY 75 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677766554322222111111111122344455555555555555555555554443
No 64
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=21.52 E-value=75 Score=23.88 Aligned_cols=30 Identities=10% Similarity=-0.023 Sum_probs=23.8
Q ss_pred ccCCCChhhHHHHHHHHHHHhhheeeeccc
Q 029288 126 DWSGQDVSGIASEICGFITVLSGTIILHAT 155 (196)
Q Consensus 126 E~~~~~~~~i~~~~~G~~ii~~GV~lLs~~ 155 (196)
+|..-..|+=+++++|+.+.++.+.++...
T Consensus 42 ~y~~sh~WRN~GIli~f~i~f~~~~~~~~e 71 (103)
T PF06422_consen 42 GYSYSHRWRNFGILIAFWIFFIVLTLLATE 71 (103)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 455556788899999999999998888753
No 65
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=20.47 E-value=2.1e+02 Score=24.73 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=35.9
Q ss_pred HHHHHHHHHhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhheeeecc
Q 029288 87 TQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHA 154 (196)
Q Consensus 87 ~Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV~lLs~ 154 (196)
.|.-++..++++..++-..-+.+...-..+.+-+.+++|| +.+..++ .|+.+.+.|+.++..
T Consensus 71 ~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e--~~~~~~~----~~~~l~~~Gv~ll~~ 132 (299)
T PRK11453 71 GQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGE--RLQGKQL----AGIALAIFGVLVLIE 132 (299)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcC--cCcHHHH----HHHHHHHHhHHHhcc
Confidence 4555666777765332222222223344556677888886 5667665 555566778877764
No 66
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=20.33 E-value=3.4e+02 Score=20.33 Aligned_cols=51 Identities=22% Similarity=0.269 Sum_probs=33.2
Q ss_pred HhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhheee
Q 029288 95 ALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTII 151 (196)
Q Consensus 95 AL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV~l 151 (196)
.+-..-+.+..-+--..=+...++.|.++|+|- .++.++ .|+.+.+.|+.+
T Consensus 100 ~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~--~t~~~~----~G~~l~~~G~~~ 150 (153)
T PF03151_consen 100 LLIKLTSPLTYSVLGNVKRILVILLSVIFFGEP--ITPLQI----IGIVLALVGVLL 150 (153)
T ss_pred HHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCc--CCHHHH----HHHHHHHHHHhe
Confidence 333334444555555566777888999999963 566554 677777778765
No 67
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=20.02 E-value=2.9e+02 Score=24.36 Aligned_cols=67 Identities=15% Similarity=0.160 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhh
Q 029288 77 FLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSG 148 (196)
Q Consensus 77 ~l~~lv~t~i~Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~G 148 (196)
+.++.++..+.=-+-++-.++.|. .|++.. |.-..+-+--..|||-++.++.+++.++.|+.+.+.=
T Consensus 60 l~~G~~~gi~~~s~~i~~ll~~yp----~~t~~f-F~GLIlgSip~l~k~~~~~~~~~~~~~~~g~~i~~~~ 126 (257)
T PF04018_consen 60 LGIGILIGILLFSKVISYLLENYP----IPTYSF-FFGLILGSIPFLYKEIKKFSPKSIIFFLLGAIIALLL 126 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCH----HHHHHH-HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 455666666666777777888777 455543 3333444445679999999999999999988766543
Done!