Query 029288
Match_columns 196
No_of_seqs 110 out of 498
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 17:07:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029288.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029288hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 96.3 0.0019 6.4E-08 50.5 2.4 67 84-156 39-105 (137)
2 3b5d_A Multidrug transporter E 95.8 0.03 1E-06 41.6 7.0 67 84-156 39-105 (110)
3 2jp3_A FXYD domain-containing 20.8 33 0.0011 23.6 1.0 26 131-156 15-40 (67)
4 2gfp_A EMRD, multidrug resista 17.0 2.6E+02 0.0088 22.4 5.9 61 90-151 111-171 (375)
5 2zxe_G FXYD10, phospholemman-l 14.3 46 0.0016 23.2 0.5 28 131-158 17-44 (74)
6 2jo1_A Phospholemman; FXYD1, N 13.2 47 0.0016 23.0 0.3 27 131-157 14-40 (72)
7 3eff_K Voltage-gated potassium 12.9 54 0.0018 24.1 0.6 42 102-151 40-81 (139)
8 2akh_X Protein-export membrane 12.3 3.5E+02 0.012 18.2 5.3 26 68-94 50-75 (77)
9 4gx0_A TRKA domain protein; me 10.0 2.1E+02 0.0073 25.5 3.7 15 102-116 51-65 (565)
10 4aps_A DI-OR tripeptide H+ sym 9.7 7.5E+02 0.026 20.4 7.8 35 88-122 407-441 (491)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=96.25 E-value=0.0019 Score=50.51 Aligned_cols=67 Identities=18% Similarity=0.295 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhheeeecccc
Q 029288 84 CVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATR 156 (196)
Q Consensus 84 t~i~Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV~lLs~~~ 156 (196)
+...-...+++|+++-+.+...|+.-.+=...+.+.|.++|+| ..++.+ ++|..+++.||++++..+
T Consensus 39 ~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE--~ls~~~----~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQ--RLDLPA----IIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC--------C----HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCC--CCCHHH----HHHHHHHHHHHHHHhcCC
Confidence 3444467899999999999999996556666778889999998 345554 578889999999997644
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=95.77 E-value=0.03 Score=41.57 Aligned_cols=67 Identities=18% Similarity=0.295 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhheeeecccc
Q 029288 84 CVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATR 156 (196)
Q Consensus 84 t~i~Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV~lLs~~~ 156 (196)
+...=...+++|+++-|.+.+.|+.=..=...+.+.|.++|+| ..++.+ .+|..+++.||.+++..+
T Consensus 39 ~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E--~~s~~~----~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQ--RLDLPA----IIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCC--CCCHHH----HHHHHHHHHHHHHHhcCC
Confidence 4444567889999999999999997677777788899999998 445555 578889999999997643
No 3
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=20.77 E-value=33 Score=23.58 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=21.0
Q ss_pred ChhhHHHHHHHHHHHhhheeeecccc
Q 029288 131 DVSGIASEICGFITVLSGTIILHATR 156 (196)
Q Consensus 131 ~~~~i~~~~~G~~ii~~GV~lLs~~~ 156 (196)
...++.+.+++.++.+.|+.+|.+.|
T Consensus 15 ~tLRigGLifA~vLfi~GI~iilS~k 40 (67)
T 2jp3_A 15 ESLQLGGLIFGGLLCIAGIALALSGK 40 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHheecchhhHHHHHHHHHHHHHcCc
Confidence 46788888898888999998887664
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=16.99 E-value=2.6e+02 Score=22.44 Aligned_cols=61 Identities=3% Similarity=-0.245 Sum_probs=29.1
Q ss_pred HHHHHHhccccceeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhheee
Q 029288 90 NYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTII 151 (196)
Q Consensus 90 ~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV~l 151 (196)
.++.+-...=+-....-++...+....+++..+---=.+. ..++....+.+....+..+..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~ 171 (375)
T 2gfp_A 111 TLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM-WNWRACYLFLLVLCAGVTFSM 171 (375)
T ss_dssp HHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH-HHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHH
Confidence 3444433333444555666666666666664432110011 124555555566555555533
No 5
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=14.26 E-value=46 Score=23.24 Aligned_cols=28 Identities=21% Similarity=0.176 Sum_probs=21.7
Q ss_pred ChhhHHHHHHHHHHHhhheeeeccccCC
Q 029288 131 DVSGIASEICGFITVLSGTIILHATREH 158 (196)
Q Consensus 131 ~~~~i~~~~~G~~ii~~GV~lLs~~~~~ 158 (196)
...++.+.+++.++.+.|+.+|.+.|=+
T Consensus 17 ~tLRigGLifA~vLfi~GI~iilS~kcr 44 (74)
T 2zxe_G 17 YRLRVVGLIVAAVLCVIGIIILLAGKCR 44 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHheeccchhHHHHHHHHHHHHHcCccc
Confidence 4678888999999999999988876654
No 6
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=13.17 E-value=47 Score=23.05 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=22.0
Q ss_pred ChhhHHHHHHHHHHHhhheeeeccccC
Q 029288 131 DVSGIASEICGFITVLSGTIILHATRE 157 (196)
Q Consensus 131 ~~~~i~~~~~G~~ii~~GV~lLs~~~~ 157 (196)
...++.+.+++.++.+.|+.+|.+.|=
T Consensus 14 ~tLRiGGLifA~vLfi~GI~iilS~Kc 40 (72)
T 2jo1_A 14 QSLQIGGLVIAGILFILGILIVLSRRC 40 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccchHHHHHHHHHHHHHHHcCcc
Confidence 467888899999999999988876653
No 7
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=12.94 E-value=54 Score=24.14 Aligned_cols=42 Identities=10% Similarity=0.230 Sum_probs=19.1
Q ss_pred eeeccceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhheee
Q 029288 102 AIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTII 151 (196)
Q Consensus 102 ~~V~Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV~l 151 (196)
+..-.+||++-|..++ | |.|. .|....+-++.++.++.|+.+
T Consensus 40 ~~~~a~yf~~~T~tTv-G----yGd~---~P~t~~~r~~~~~~~~~G~~~ 81 (139)
T 3eff_K 40 TYPRALWWSVETATTV-G----YGDL---YPVTLWGRLVAVVVMVAGITS 81 (139)
T ss_dssp CHHHHHHHHHHHHTTC-C----CSSS---CCCSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHheeeecc-c----CCCC---cCCCcCHHHHHHHHHHHHHHH
Confidence 3444566665555443 2 4443 443334444444444444443
No 8
>2akh_X Protein-export membrane protein SECG; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_X
Probab=12.25 E-value=3.5e+02 Score=18.25 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=15.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHH
Q 029288 68 QIAYPQTWFFLTVAAVCVVTQLNYLNK 94 (196)
Q Consensus 68 qf~~~~ty~~l~~lv~t~i~Qi~yLNk 94 (196)
.+..-.||++.++..++++. +.|+++
T Consensus 50 ~~L~k~T~~la~~F~v~sl~-l~~~~~ 75 (77)
T 2akh_X 50 NFMTRMTALLATLFFIISLV-LGNINS 75 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhc
Confidence 34456777776666666554 555554
No 9
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=9.96 E-value=2.1e+02 Score=25.54 Aligned_cols=15 Identities=13% Similarity=0.425 Sum_probs=7.5
Q ss_pred eeeccceeehhHHHH
Q 029288 102 AIVSPVYYVMFTTLT 116 (196)
Q Consensus 102 ~~V~Pvyyv~fT~~~ 116 (196)
+..-.+||++-|.++
T Consensus 51 ~~~~~~y~~~~t~tT 65 (565)
T 4gx0_A 51 SFMAGIYWTITVMTT 65 (565)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred chhhhhheeeeeeee
Confidence 444555655544433
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=9.74 E-value=7.5e+02 Score=20.45 Aligned_cols=35 Identities=6% Similarity=0.085 Sum_probs=21.7
Q ss_pred HHHHHHHHhccccceeeccceeehhHHHHhhhhhh
Q 029288 88 QLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAI 122 (196)
Q Consensus 88 Qi~yLNkAL~~fdt~~V~Pvyyv~fT~~~Ii~g~I 122 (196)
...+.++....-......-+++........+++.+
T Consensus 407 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~ 441 (491)
T 4aps_A 407 GLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQL 441 (491)
T ss_dssp HHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466665555555666677777777776666554
Done!