Query 029288
Match_columns 196
No_of_seqs 110 out of 498
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 17:07:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029288.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029288hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 34.7 13 0.00092 28.7 3.2 13 24-36 81-93 (447)
2 d1r3jc_ f.14.1.1 (C:) Potassiu 16.8 36 0.0026 22.3 2.3 40 106-153 44-83 (103)
3 d1umua_ b.87.1.1 (A:) UmuD' {E 7.9 1E+02 0.0073 20.2 2.3 30 163-192 16-47 (105)
4 d1uf9a_ c.37.1.1 (A:) Dephosph 6.4 96 0.007 21.3 1.6 13 32-45 1-13 (191)
5 d2axtl1 f.23.31.1 (L:1-37) Pho 6.3 2.3E+02 0.017 15.5 2.8 21 73-93 17-37 (37)
6 d1wpga4 f.33.1.1 (A:1-124,A:24 5.7 1.8E+02 0.013 23.4 3.3 20 69-88 57-76 (472)
7 d1rzhh2 f.23.10.1 (H:11-35) Ph 5.3 1.8E+02 0.013 14.8 1.8 12 71-82 7-18 (26)
8 d2ejna2 a.101.1.1 (A:75-144) A 5.0 1E+02 0.0074 19.6 0.8 13 90-102 19-31 (70)
9 d1qled_ f.23.8.1 (D:) Bacteria 4.8 1.9E+02 0.014 16.6 1.8 19 68-86 19-37 (43)
10 d1m56d_ f.23.8.1 (D:) Bacteria 4.7 2.5E+02 0.018 15.9 2.4 19 68-86 18-36 (42)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=34.68 E-value=13 Score=28.66 Aligned_cols=13 Identities=15% Similarity=0.135 Sum_probs=9.3
Q ss_pred hhccccCccceEE
Q 029288 24 HFEPRCGQTNILV 36 (196)
Q Consensus 24 ~~~pr~g~~~~~v 36 (196)
+..-|+|||+++.
T Consensus 81 ~l~Dr~g~r~~~~ 93 (447)
T d1pw4a_ 81 SVSDRSNPRVFLP 93 (447)
T ss_dssp HHHHHSCHHHHHH
T ss_pred HHHHHcCchHHHH
Confidence 4456899998665
No 2
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=16.84 E-value=36 Score=22.29 Aligned_cols=40 Identities=8% Similarity=0.186 Sum_probs=24.9
Q ss_pred cceeehhHHHHhhhhhhhhcccCCCChhhHHHHHHHHHHHhhheeeec
Q 029288 106 PVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILH 153 (196)
Q Consensus 106 Pvyyv~fT~~~Ii~g~I~f~E~~~~~~~~i~~~~~G~~ii~~GV~lLs 153 (196)
.+|+++-|..++ .|.++.|....+=+++++..+.|+.+++
T Consensus 44 aly~~~vT~tTv--------GYGDi~P~t~~gr~~~~~~~~~Gi~~~~ 83 (103)
T d1r3jc_ 44 ALWWSVETATTV--------GYGDLYPVTLWGRCVAVVVMVAGITSFG 83 (103)
T ss_dssp HHHHHHHHHTTC--------CCSSSCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhheeeeccc--------ccCccccCChhHHHHHHHHHHHHHHHHH
Confidence 355555554442 4555677777777777777777776653
No 3
>d1umua_ b.87.1.1 (A:) UmuD' {Escherichia coli [TaxId: 562]}
Probab=7.90 E-value=1e+02 Score=20.22 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=20.2
Q ss_pred CCCCcceecccCCCCCCC--ccccceeeeccc
Q 029288 163 APVGTVTWYVSGDSLKGA--EEEHLITIHNSD 192 (196)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 192 (196)
.|.++-.+|+++|||.+. .+++.+-.+|..
T Consensus 16 ~~~~~f~~rV~GdSM~~~gI~~GDlliVd~~~ 47 (105)
T d1umua_ 16 HPSATYFVKASGDSMIDGGISDGDLLIVDSAI 47 (105)
T ss_dssp CGGGEEEEECCSSTTGGGTCCTTCEEEEETTS
T ss_pred CCCceEEEEEcCCccccCccCCCCEEEEEccc
Confidence 455667788899999533 566666666544
No 4
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}
Probab=6.40 E-value=96 Score=21.27 Aligned_cols=13 Identities=23% Similarity=0.616 Sum_probs=9.6
Q ss_pred cceEEEEeeecccc
Q 029288 32 TNILVYLGICSLMG 45 (196)
Q Consensus 32 ~~~~vyv~icsl~G 45 (196)
|||++ +|++|..|
T Consensus 1 k~p~I-IgitG~~g 13 (191)
T d1uf9a_ 1 KHPII-IGITGNIG 13 (191)
T ss_dssp CCCEE-EEEEECTT
T ss_pred CCCEE-EEEECCCC
Confidence 57777 88888666
No 5
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.28 E-value=2.3e+02 Score=15.54 Aligned_cols=21 Identities=10% Similarity=0.138 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029288 73 QTWFFLTVAAVCVVTQLNYLN 93 (196)
Q Consensus 73 ~ty~~l~~lv~t~i~Qi~yLN 93 (196)
+.|-++++.+..+++--+|.|
T Consensus 17 Ly~GlLlifvl~vLFssYfFN 37 (37)
T d2axtl1 17 LYLGLLLILVLALLFSSYFFN 37 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 446666677766666666654
No 6
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=5.69 E-value=1.8e+02 Score=23.45 Aligned_cols=20 Identities=15% Similarity=0.112 Sum_probs=12.5
Q ss_pred cchhHHHHHHHHHHHHHHHH
Q 029288 69 IAYPQTWFFLTVAAVCVVTQ 88 (196)
Q Consensus 69 f~~~~ty~~l~~lv~t~i~Q 88 (196)
|++|..+++++..+++.++.
T Consensus 57 ~~~~~~~iL~~aa~ls~~~~ 76 (472)
T d1wpga4 57 FEDLLVRILLLAACISFVLA 76 (472)
T ss_dssp TCSHHHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHH
Confidence 55666677666666666554
No 7
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.28 E-value=1.8e+02 Score=14.76 Aligned_cols=12 Identities=25% Similarity=0.437 Sum_probs=7.7
Q ss_pred hhHHHHHHHHHH
Q 029288 71 YPQTWFFLTVAA 82 (196)
Q Consensus 71 ~~~ty~~l~~lv 82 (196)
-|.+|.++..++
T Consensus 7 iw~fw~ffalli 18 (26)
T d1rzhh2 7 IYSFWIFLAGLI 18 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 467777666554
No 8
>d2ejna2 a.101.1.1 (A:75-144) Allergen Fel d I-B chain {Cat (Felis catus) [TaxId: 9685]}
Probab=5.01 E-value=1e+02 Score=19.55 Aligned_cols=13 Identities=31% Similarity=0.340 Sum_probs=10.5
Q ss_pred HHHHHHhccccce
Q 029288 90 NYLNKALDTFNAA 102 (196)
Q Consensus 90 ~yLNkAL~~fdt~ 102 (196)
-+||.-|+.||++
T Consensus 19 ~~L~~~L~~fnaT 31 (70)
T d2ejna2 19 LLLDLSLTKVNAT 31 (70)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHhcCC
Confidence 3688889999886
No 9
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=4.75 E-value=1.9e+02 Score=16.58 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=12.8
Q ss_pred ccchhHHHHHHHHHHHHHH
Q 029288 68 QIAYPQTWFFLTVAAVCVV 86 (196)
Q Consensus 68 qf~~~~ty~~l~~lv~t~i 86 (196)
.|..|.+|..+++.++.+.
T Consensus 19 gFi~~~t~~~i~~i~~lif 37 (43)
T d1qled_ 19 GFIKGATWVSILSIAVLVF 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4777888877666665544
No 10
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.72 E-value=2.5e+02 Score=15.88 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=12.8
Q ss_pred ccchhHHHHHHHHHHHHHH
Q 029288 68 QIAYPQTWFFLTVAAVCVV 86 (196)
Q Consensus 68 qf~~~~ty~~l~~lv~t~i 86 (196)
.|..|.+|..+++.++.+.
T Consensus 18 gFik~~t~~~i~~i~~lif 36 (42)
T d1m56d_ 18 GFVRMVTWAAVVIVAALIF 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3677888887666665544
Done!