BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029289
(196 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 77/128 (60%), Gaps = 19/128 (14%)
Query: 70 SEKYDPCTEKHSVVYFNQPEVQKALHVIPAVALA-KWETCRWHQQHALMIFFIFTALQWG 128
+ YDPCTE++S Y+N+ +VQ ALH A+ W TC
Sbjct: 1 TGSYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCS------------------D 42
Query: 129 VVNNNWLDSPRIVLDIYHELIHSGLRIWMFSGDTDAVIPVTSARYSIDALNLPTVKPWRA 188
+N +W D+PR +L IY ELI +GLRIW+FSGDTDAV+P+T+ RYSI AL LPT W
Sbjct: 43 TINTHWHDAPRSMLPIYRELIAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYP 102
Query: 189 WYDEGQVG 196
WYD+ +VG
Sbjct: 103 WYDDQEVG 110
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 117 bits (292), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 76/126 (60%), Gaps = 19/126 (15%)
Query: 72 KYDPCTEKHSVVYFNQPEVQKALHVIPAVALA-KWETCRWHQQHALMIFFIFTALQWGVV 130
YDPCTE++S Y+N+ +VQ ALH A+ W TC +
Sbjct: 1 SYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCS------------------DTI 42
Query: 131 NNNWLDSPRIVLDIYHELIHSGLRIWMFSGDTDAVIPVTSARYSIDALNLPTVKPWRAWY 190
N +W D+PR +L IY ELI +GLRIW+FSGDTDAV+P+T+ RYSI AL LPT W WY
Sbjct: 43 NTHWHDAPRSMLPIYRELIAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWY 102
Query: 191 DEGQVG 196
D+ +VG
Sbjct: 103 DDQEVG 108
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 117 bits (292), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 76/126 (60%), Gaps = 19/126 (15%)
Query: 72 KYDPCTEKHSVVYFNQPEVQKALHVIPAVALA-KWETCRWHQQHALMIFFIFTALQWGVV 130
YDPCTE++S Y+N+ +VQ ALH A+ W TC +
Sbjct: 1 SYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCS------------------DTI 42
Query: 131 NNNWLDSPRIVLDIYHELIHSGLRIWMFSGDTDAVIPVTSARYSIDALNLPTVKPWRAWY 190
N +W D+PR +L IY ELI +GLRIW+FSGDTDAV+P+T+ RYSI AL LPT W WY
Sbjct: 43 NTHWHDAPRSMLPIYRELIAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWY 102
Query: 191 DEGQVG 196
D+ +VG
Sbjct: 103 DDQEVG 108
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 117 bits (292), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 76/126 (60%), Gaps = 19/126 (15%)
Query: 72 KYDPCTEKHSVVYFNQPEVQKALHVIPAVALA-KWETCRWHQQHALMIFFIFTALQWGVV 130
YDPCTE++S Y+N+ +VQ ALH A+ W TC +
Sbjct: 1 SYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCS------------------DTI 42
Query: 131 NNNWLDSPRIVLDIYHELIHSGLRIWMFSGDTDAVIPVTSARYSIDALNLPTVKPWRAWY 190
N +W D+PR +L IY ELI +GLRIW+FSGDTDAV+P+T+ RYSI AL LPT W WY
Sbjct: 43 NTHWHDAPRSMLPIYRELIAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWY 102
Query: 191 DEGQVG 196
D+ +VG
Sbjct: 103 DDQEVG 108
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 69/129 (53%), Gaps = 22/129 (17%)
Query: 72 KYDPCTEKHSVVYFNQPEVQKALHV-IPAVALAKWETCRWHQQHALMIFFIFTALQWGVV 130
YDPC +S+ Y N PEVQ ALH + + W C + IF QWG
Sbjct: 3 PYDPCAVFNSINYLNLPEVQTALHANVSGIVEYPWTVC------SNTIFD-----QWGQA 51
Query: 131 NNNWLDSPRIVLDIYHELIHSGLRIWMFSGDTDAVIPVTSARYSIDALNLPTVKPWRAWY 190
++ +L +Y ELI +GLR+W++SGDTD+V+PV+S R S+ AL LP W WY
Sbjct: 52 ADD-------LLPVYRELIQAGLRVWVYSGDTDSVVPVSSTRRSLAALELPVKTSWYPWY 104
Query: 191 ---DEGQVG 196
E +VG
Sbjct: 105 MAPTEREVG 113
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 42/55 (76%), Gaps = 2/55 (3%)
Query: 1 MQVGNALTDDYHDYLGLFQFWWSAGLISDDTYKQLKLLCDYESFIHPS--CTASV 53
VGN L DDYHDY+G F+FWW+ G++SDDTY++LK C ++SFIHPS C A+
Sbjct: 184 FMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAAT 238
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 42/55 (76%), Gaps = 2/55 (3%)
Query: 1 MQVGNALTDDYHDYLGLFQFWWSAGLISDDTYKQLKLLCDYESFIHPS--CTASV 53
VGN L DDYHDY+G F+FWW+ G++SDDTY++LK C ++SFIHPS C A+
Sbjct: 184 FMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAAT 238
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 42/55 (76%), Gaps = 2/55 (3%)
Query: 1 MQVGNALTDDYHDYLGLFQFWWSAGLISDDTYKQLKLLCDYESFIHPS--CTASV 53
VGN L DDYHDY+G F+FWW+ G++SDDTY++LK C ++SFIHPS C A+
Sbjct: 179 FMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAAT 233
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 42/55 (76%), Gaps = 2/55 (3%)
Query: 1 MQVGNALTDDYHDYLGLFQFWWSAGLISDDTYKQLKLLCDYESFIHPS--CTASV 53
VGN L DDYHDY+G F+FWW+ G++SDDTY++LK C ++SFIHPS C A+
Sbjct: 180 FMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAAT 234
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 3 VGNALTDDYHDYLGLFQFWWSAGLISDDTYKQLKLLCDYESFIHPS--CT 50
V + LT+D+ D +G+F+ WW GLISD+T +C SF+HP+ CT
Sbjct: 186 VSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCPGTSFMHPTPECT 235
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 26/126 (20%)
Query: 75 PCTEKHSV-VYFNQPEVQKALHVIPAVALAKWETCRWHQQHALMIFFIFTALQWGVVNNN 133
PCT + Y N P V+KAL++ L +W+ C + +VN
Sbjct: 302 PCTNTTAASTYLNNPYVRKALNI--PEQLPQWDMCNF------------------LVNLQ 341
Query: 134 WLDSPRIVLDIYHELIHS-GLRIWMFSGDTDAVIPVTSARYSIDALNLPT---VKPWRAW 189
+ R + Y +L+ S +I +++GD D + +D+LN +PW
Sbjct: 342 YRRLYRSMNSQYLKLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVK 401
Query: 190 Y-DEGQ 194
Y D G+
Sbjct: 402 YGDSGE 407
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 26/126 (20%)
Query: 75 PCTEKHSV-VYFNQPEVQKALHVIPAVALAKWETCRWHQQHALMIFFIFTALQWGVVNNN 133
PCT + Y N P V+KAL++ L +W+ C + +VN
Sbjct: 4 PCTNTTAASTYLNNPYVRKALNI--PEQLPQWDMCNF------------------LVNLQ 43
Query: 134 WLDSPRIVLDIYHELIHS-GLRIWMFSGDTDAVIPVTSARYSIDALNLPT---VKPWRAW 189
+ R + Y +L+ S +I +++GD D + +D+LN +PW
Sbjct: 44 YRRLYRSMNSQYLKLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVK 103
Query: 190 Y-DEGQ 194
Y D G+
Sbjct: 104 YGDSGE 109
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 11/96 (11%)
Query: 51 ASVSQSNRLLKRMHVVGHASEKYDPCTEKHSVVYFNQPEVQKALHVIPAVALAK---WET 107
A S + ++K+M ++ A + C + +VVY N +Q + +I A+ K ++
Sbjct: 12 AGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNT--IQSIIAIIRAMGRLKIDFGDS 69
Query: 108 CRWHQQHALMIFF------IFTALQWGVVNNNWLDS 137
R L + TA GV+ W DS
Sbjct: 70 ARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDS 105
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 11/96 (11%)
Query: 51 ASVSQSNRLLKRMHVVGHASEKYDPCTEKHSVVYFNQPEVQKALHVIPAVALAK---WET 107
A S + ++K+M ++ A + C + +VVY N +Q + +I A+ K ++
Sbjct: 15 AGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNT--IQSIIAIIRAMGRLKIDFGDS 72
Query: 108 CRWHQQHALMIFF------IFTALQWGVVNNNWLDS 137
R L + TA GV+ W DS
Sbjct: 73 ARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDS 108
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 11/96 (11%)
Query: 51 ASVSQSNRLLKRMHVVGHASEKYDPCTEKHSVVYFNQPEVQKALHVIPAVALAK---WET 107
A S + ++K+M ++ A + C + +VVY N +Q + +I A+ K ++
Sbjct: 16 AGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNT--IQSIIAIIRAMGRLKIDFGDS 73
Query: 108 CRWHQQHALMIFF------IFTALQWGVVNNNWLDS 137
R L + TA GV+ W DS
Sbjct: 74 ARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDS 109
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 11/96 (11%)
Query: 51 ASVSQSNRLLKRMHVVGHASEKYDPCTEKHSVVYFNQPEVQKALHVIPAVALAK---WET 107
A S + ++K+M ++ A + C + +VVY N +Q + +I A+ K ++
Sbjct: 17 AGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNT--IQSIIAIIRAMGRLKIDFGDS 74
Query: 108 CRWHQQHALMIFF------IFTALQWGVVNNNWLDS 137
R L + TA GV+ W DS
Sbjct: 75 ARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDS 110
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 11/96 (11%)
Query: 51 ASVSQSNRLLKRMHVVGHASEKYDPCTEKHSVVYFNQPEVQKALHVIPAVALAK---WET 107
A S + ++K+M ++ A + C + +VVY N +Q + +I A+ K ++
Sbjct: 9 AGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNT--IQSIIAIIRAMGRLKIDFGDS 66
Query: 108 CRWHQQHALMIFF------IFTALQWGVVNNNWLDS 137
R L + TA GV+ W DS
Sbjct: 67 ARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDS 102
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1
Length = 354
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 11/96 (11%)
Query: 51 ASVSQSNRLLKRMHVVGHASEKYDPCTEKHSVVYFNQPEVQKALHVIPAVALAK---WET 107
A S + ++K+M ++ A + C + +VVY N +Q + +I A+ K ++
Sbjct: 41 AGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNT--IQSIIAIIRAMGRLKIDFGDS 98
Query: 108 CRWHQQHALMIFF------IFTALQWGVVNNNWLDS 137
R L + TA GV+ W DS
Sbjct: 99 ARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDS 134
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 11/96 (11%)
Query: 51 ASVSQSNRLLKRMHVVGHASEKYDPCTEKHSVVYFNQPEVQKALHVIPAVALAK---WET 107
A S + ++K+M ++ A + C + +VVY N +Q + +I A+ K ++
Sbjct: 41 AGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNT--IQSIIAIIRAMGRLKIDFGDS 98
Query: 108 CRWHQQHALMIFF------IFTALQWGVVNNNWLDS 137
R L + TA GV+ W DS
Sbjct: 99 ARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDS 134
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 11/96 (11%)
Query: 51 ASVSQSNRLLKRMHVVGHASEKYDPCTEKHSVVYFNQPEVQKALHVIPAVALAK---WET 107
A S + ++K+M ++ A + C + +VVY N +Q + +I A+ K ++
Sbjct: 11 AGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNT--IQSIIAIIRAMGRLKIDFGDS 68
Query: 108 CRWHQQHALMIFF------IFTALQWGVVNNNWLDS 137
R L + TA GV+ W DS
Sbjct: 69 ARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDS 104
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 11/96 (11%)
Query: 51 ASVSQSNRLLKRMHVVGHASEKYDPCTEKHSVVYFNQPEVQKALHVIPAVALAK---WET 107
A S + ++K+M ++ A + C + +VVY N +Q + +I A+ K ++
Sbjct: 10 AGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNT--IQSIIAIIRAMGRLKIDFGDS 67
Query: 108 CRWHQQHALMIFF------IFTALQWGVVNNNWLDS 137
R L + TA GV+ W DS
Sbjct: 68 ARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDS 103
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 11/96 (11%)
Query: 51 ASVSQSNRLLKRMHVVGHASEKYDPCTEKHSVVYFNQPEVQKALHVIPAVALAK---WET 107
A S + ++K+M ++ A + C + +VVY N +Q + +I A+ K ++
Sbjct: 14 AGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNT--IQSIIAIIRAMGRLKIDFGDS 71
Query: 108 CRWHQQHALMIFF------IFTALQWGVVNNNWLDS 137
R L + TA GV+ W DS
Sbjct: 72 ARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDS 107
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 11/96 (11%)
Query: 51 ASVSQSNRLLKRMHVVGHASEKYDPCTEKHSVVYFNQPEVQKALHVIPAVALAK---WET 107
A S + ++K+M ++ A + C + +VVY N +Q + +I A+ K +
Sbjct: 43 AGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNT--IQSIIAIIRAMGRLKIDFGDA 100
Query: 108 CRWHQQHALMIFF------IFTALQWGVVNNNWLDS 137
R L + TA GV+ W DS
Sbjct: 101 ARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDS 136
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 11/96 (11%)
Query: 51 ASVSQSNRLLKRMHVVGHASEKYDPCTEKHSVVYFNQPEVQKALHVIPAVALAK---WET 107
A S + ++K+M ++ A + C + +VVY N +Q + +I A+ K ++
Sbjct: 12 ARESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNT--IQSIIAIIRAMGRLKIDFGDS 69
Query: 108 CRWHQQHALMIFF------IFTALQWGVVNNNWLDS 137
R L + TA GV+ W DS
Sbjct: 70 ARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDS 105
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 11/96 (11%)
Query: 51 ASVSQSNRLLKRMHVVGHASEKYDPCTEKHSVVYFNQPEVQKALHVIPAVALAK---WET 107
A S + ++K+M ++ A + C + +VVY N +Q + +I A+ K +
Sbjct: 40 AGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNT--IQSIIAIIRAMGRLKIDFGDA 97
Query: 108 CRWHQQHALMIFF------IFTALQWGVVNNNWLDS 137
R L + TA GV+ W DS
Sbjct: 98 ARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDS 133
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 11/96 (11%)
Query: 51 ASVSQSNRLLKRMHVVGHASEKYDPCTEKHSVVYFNQPEVQKALHVIPAVALAK---WET 107
A S + ++K+M ++ A + C + +VVY N +Q + +I A+ K ++
Sbjct: 15 ARESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNT--IQSIIAIIRAMGRLKIDFGDS 72
Query: 108 CRWHQQHALMIFF------IFTALQWGVVNNNWLDS 137
R L + TA GV+ W DS
Sbjct: 73 ARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDS 108
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 11/96 (11%)
Query: 51 ASVSQSNRLLKRMHVVGHASEKYDPCTEKHSVVYFNQPEVQKALHVIPAVALAK---WET 107
A S + ++K+M ++ A + C + +VVY N +Q + +I A+ K +
Sbjct: 47 AGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNT--IQSIIAIIRAMGRLKIDFGDA 104
Query: 108 CRWHQQHALMIFF------IFTALQWGVVNNNWLDS 137
R L + TA GV+ W DS
Sbjct: 105 ARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDS 140
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 11/96 (11%)
Query: 51 ASVSQSNRLLKRMHVVGHASEKYDPCTEKHSVVYFNQPEVQKALHVIPAVALAK---WET 107
A S + ++K+M ++ A + C + +VVY N +Q + +I A+ K +
Sbjct: 40 AGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNT--IQSIIAIIRAMGRLKIDFGDA 97
Query: 108 CRWHQQHALMIFF------IFTALQWGVVNNNWLDS 137
R L + TA GV+ W DS
Sbjct: 98 ARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDS 133
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 11/96 (11%)
Query: 51 ASVSQSNRLLKRMHVVGHASEKYDPCTEKHSVVYFNQPEVQKALHVIPAVALAK---WET 107
A S + ++K+M ++ A + C + +VVY N +Q + +I A+ K +
Sbjct: 40 AGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNT--IQSIIAIIRAMGRLKIDFGDA 97
Query: 108 CRWHQQHALMIFF------IFTALQWGVVNNNWLDS 137
R L + TA GV+ W DS
Sbjct: 98 ARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDS 133
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 11/96 (11%)
Query: 51 ASVSQSNRLLKRMHVVGHASEKYDPCTEKHSVVYFNQPEVQKALHVIPAVALAK---WET 107
A S + ++K+M ++ A + C + +VVY N +Q + +I A+ K +
Sbjct: 40 AGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNT--IQSIIAIIRAMGRLKIDFGDA 97
Query: 108 CRWHQQHALMIFF------IFTALQWGVVNNNWLDS 137
R L + TA GV+ W DS
Sbjct: 98 ARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDS 133
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 11/96 (11%)
Query: 51 ASVSQSNRLLKRMHVVGHASEKYDPCTEKHSVVYFNQPEVQKALHVIPAVALAK---WET 107
A S + ++K+M ++ A + C + +VVY N +Q + +I A+ K +
Sbjct: 10 AGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNT--IQSIIAIIRAMGRLKIDFGDA 67
Query: 108 CRWHQQHALMIFF------IFTALQWGVVNNNWLDS 137
R L + TA GV+ W DS
Sbjct: 68 ARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDS 103
>pdb|3A2B|A Chain A, Crystal Structure Of Serine Palmitoyltransferase From
Sphingobacterium Multivorum With Substrate L-Serine
Length = 398
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 36 KLLCDYESFIHPSCTASVSQSNRLLKRMHVVGHASEKYDPCTEKHSVVYFNQPEVQ 91
K+L D F++P + +V L++ + H ++ D EK V F Q EV+
Sbjct: 341 KMLQDDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKM-VKVFKQAEVE 395
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,393,797
Number of Sequences: 62578
Number of extensions: 248522
Number of successful extensions: 723
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 706
Number of HSP's gapped (non-prelim): 32
length of query: 196
length of database: 14,973,337
effective HSP length: 94
effective length of query: 102
effective length of database: 9,091,005
effective search space: 927282510
effective search space used: 927282510
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.5 bits)