Query 029289
Match_columns 196
No_of_seqs 155 out of 1249
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 10:31:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029289.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029289hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1282 Serine carboxypeptidas 100.0 5.3E-40 1.1E-44 286.5 11.9 177 1-196 206-408 (454)
2 PLN02213 sinapoylglucose-malat 100.0 1.8E-35 4E-40 250.6 13.1 175 1-196 89-277 (319)
3 PLN03016 sinapoylglucose-malat 100.0 2.1E-34 4.5E-39 252.4 12.6 175 1-196 203-391 (433)
4 PLN02209 serine carboxypeptida 100.0 1E-33 2.2E-38 248.2 11.8 175 1-196 205-395 (437)
5 PTZ00472 serine carboxypeptida 100.0 1.2E-32 2.7E-37 243.3 11.6 174 1-196 209-414 (462)
6 PF00450 Peptidase_S10: Serine 100.0 2.9E-32 6.2E-37 236.9 7.4 177 1-196 174-376 (415)
7 KOG1283 Serine carboxypeptidas 99.6 4.5E-15 9.7E-20 123.2 6.1 165 1-186 159-359 (414)
8 COG2939 Carboxypeptidase C (ca 99.2 2.3E-11 5E-16 106.8 5.2 164 1-186 235-434 (498)
9 PF00681 Plectin: Plectin repe 78.8 1.4 3E-05 26.2 1.5 32 6-37 12-43 (45)
10 PF08386 Abhydrolase_4: TAP-li 74.9 3.7 8.1E-05 28.8 3.1 29 152-180 34-62 (103)
11 PF00326 Peptidase_S9: Prolyl 69.0 5.2 0.00011 31.2 3.0 29 151-179 143-171 (213)
12 PF03583 LIP: Secretory lipase 68.1 5.2 0.00011 33.5 3.0 31 152-182 219-249 (290)
13 PF07849 DUF1641: Protein of u 57.7 3.7 8.1E-05 24.1 0.2 17 80-96 15-31 (42)
14 PF07519 Tannase: Tannase and 56.9 11 0.00024 33.9 3.2 39 140-178 341-379 (474)
15 PF10503 Esterase_phd: Esteras 56.8 11 0.00024 30.4 2.8 26 152-177 169-194 (220)
16 PF12695 Abhydrolase_5: Alpha/ 56.4 14 0.0003 26.3 3.1 34 146-179 98-131 (145)
17 PRK13604 luxD acyl transferase 55.1 17 0.00038 30.9 3.9 28 152-179 202-229 (307)
18 COG0400 Predicted esterase [Ge 54.3 12 0.00026 30.0 2.6 36 151-186 145-180 (207)
19 PLN02298 hydrolase, alpha/beta 53.9 16 0.00035 30.5 3.5 30 152-181 251-280 (330)
20 PHA02857 monoglyceride lipase; 49.9 23 0.00049 28.5 3.7 29 151-179 208-236 (276)
21 TIGR01840 esterase_phb esteras 48.6 16 0.00036 28.5 2.6 27 153-179 169-195 (212)
22 PF05414 DUF1717: Viral domain 48.5 11 0.00024 25.7 1.4 11 152-162 40-50 (101)
23 PF09851 SHOCT: Short C-termin 47.7 19 0.00041 19.5 2.0 19 19-37 9-27 (31)
24 TIGR03611 RutD pyrimidine util 42.5 28 0.00061 26.9 3.1 28 152-179 198-225 (257)
25 TIGR02427 protocat_pcaD 3-oxoa 42.2 46 0.00099 25.3 4.3 30 151-180 192-221 (251)
26 PRK10749 lysophospholipase L2; 41.5 24 0.00052 29.7 2.7 27 152-178 259-285 (330)
27 PF02230 Abhydrolase_2: Phosph 41.4 27 0.00058 27.4 2.8 27 152-178 155-181 (216)
28 PRK11460 putative hydrolase; P 41.2 28 0.00061 27.8 3.0 29 151-179 147-175 (232)
29 TIGR01680 Veg_Stor_Prot vegeta 41.1 57 0.0012 27.4 4.7 43 138-182 147-189 (275)
30 TIGR01607 PST-A Plasmodium sub 40.8 34 0.00074 29.0 3.5 29 152-180 270-298 (332)
31 PF03767 Acid_phosphat_B: HAD 40.6 52 0.0011 26.5 4.4 43 138-182 117-159 (229)
32 cd01427 HAD_like Haloacid deha 40.1 79 0.0017 21.6 4.9 39 137-180 25-63 (139)
33 TIGR01675 plant-AP plant acid 39.5 61 0.0013 26.4 4.6 43 138-182 122-164 (229)
34 smart00250 PLEC Plectin repeat 38.6 15 0.00032 20.8 0.7 26 6-31 12-37 (38)
35 PLN02652 hydrolase; alpha/beta 38.2 33 0.00071 30.1 3.1 28 152-179 324-351 (395)
36 PLN02872 triacylglycerol lipas 37.3 37 0.00081 29.8 3.3 28 152-179 325-352 (395)
37 PF02739 5_3_exonuc_N: 5'-3' e 36.1 42 0.00091 25.8 3.1 17 149-165 122-138 (169)
38 PRK10566 esterase; Provisional 36.0 36 0.00077 26.9 2.8 30 152-181 186-215 (249)
39 PF00561 Abhydrolase_1: alpha/ 34.2 64 0.0014 24.4 3.9 29 150-178 173-201 (230)
40 PF05068 MtlR: Mannitol repres 33.6 45 0.00097 25.9 2.8 28 10-37 62-89 (170)
41 PF00702 Hydrolase: haloacid d 33.4 40 0.00086 25.8 2.6 26 139-164 130-155 (215)
42 PLN03087 BODYGUARD 1 domain co 32.5 72 0.0016 28.9 4.4 35 145-179 410-445 (481)
43 PLN02442 S-formylglutathione h 32.3 47 0.001 27.4 3.0 29 150-178 215-244 (283)
44 PF12697 Abhydrolase_6: Alpha/ 31.5 99 0.0022 22.8 4.5 29 150-178 174-202 (228)
45 PF09664 DUF2399: Protein of u 31.1 59 0.0013 24.6 3.1 24 140-164 54-77 (152)
46 TIGR01738 bioH putative pimelo 30.5 71 0.0015 24.1 3.6 29 151-179 187-215 (245)
47 TIGR01836 PHA_synth_III_C poly 29.7 58 0.0013 27.6 3.2 28 152-179 286-313 (350)
48 TIGR03056 bchO_mg_che_rel puta 28.8 62 0.0014 25.5 3.1 27 152-178 220-246 (278)
49 PLN02385 hydrolase; alpha/beta 28.6 59 0.0013 27.5 3.0 28 152-179 279-306 (349)
50 TIGR01249 pro_imino_pep_1 prol 27.5 1E+02 0.0022 25.4 4.2 28 152-179 248-275 (306)
51 PRK10349 carboxylesterase BioH 27.4 89 0.0019 24.7 3.8 29 150-178 194-222 (256)
52 PRK07581 hypothetical protein; 27.1 89 0.0019 26.1 3.9 27 152-178 275-301 (339)
53 TIGR02679 conserved hypothetic 27.0 65 0.0014 28.4 3.0 24 140-164 286-309 (385)
54 PF01624 MutS_I: MutS domain I 26.9 77 0.0017 22.3 3.0 23 139-161 64-86 (113)
55 COG2267 PldB Lysophospholipase 25.4 72 0.0016 26.8 2.9 32 151-182 227-259 (298)
56 PF03172 Sp100: Sp100 domain; 24.6 50 0.0011 23.4 1.6 24 18-41 25-51 (103)
57 TIGR02240 PHA_depoly_arom poly 23.0 92 0.002 25.0 3.1 28 152-179 207-234 (276)
58 TIGR03343 biphenyl_bphD 2-hydr 22.8 1.4E+02 0.003 23.7 4.1 28 151-178 222-249 (282)
59 PRK13840 sucrose phosphorylase 22.7 94 0.002 28.4 3.3 45 140-190 66-112 (495)
60 COG4474 Uncharacterized protei 22.6 1.5E+02 0.0032 23.1 3.9 30 141-177 31-60 (180)
61 PRK03592 haloalkane dehalogena 22.6 82 0.0018 25.6 2.8 26 152-177 228-253 (295)
62 KOG4178 Soluble epoxide hydrol 22.5 77 0.0017 27.2 2.5 22 152-173 258-279 (322)
63 PF04214 DUF411: Protein of un 22.1 97 0.0021 20.4 2.4 21 86-111 9-29 (70)
64 PRK05077 frsA fermentation/res 21.7 96 0.0021 27.3 3.1 27 152-178 355-381 (414)
65 PRK00870 haloalkane dehalogena 21.5 1.2E+02 0.0026 24.7 3.6 32 146-178 233-264 (302)
No 1
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=100.00 E-value=5.3e-40 Score=286.52 Aligned_cols=177 Identities=38% Similarity=0.673 Sum_probs=150.4
Q ss_pred CeeecCcCCccccchhHHHHHHHhcCCCHHHHHHHhccCCccc-------cccccchhhhHHhH-HHhhhhhcccC----
Q 029289 1 MQVGNALTDDYHDYLGLFQFWWSAGLISDDTYKQLKLLCDYES-------FIHPSCTASVSQSN-RLLKRMHVVGH---- 68 (196)
Q Consensus 1 i~IGNg~~dp~~q~~~~~~~a~~~glI~~~~~~~~~~~C~~~~-------~~~~~C~~~~~~~~-~~~~~~~~~~~---- 68 (196)
++||||++|+..|.+++++|+|+|||||+++|+.+++.|.+.. ..+..|..+..... .+.+.++.+..
T Consensus 206 ~~IGNg~td~~~~~~~~~~~a~~h~liSde~~~~l~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~i~~y~i~~~~ 285 (454)
T KOG1282|consen 206 YAIGNGLTDPEIDYNGRIPFAWGHGLISDELYESLKRACDFSSDNYANVDPSNTKCNKAVEEFDSKTTGDIDNYYILTPD 285 (454)
T ss_pred EEecCcccCccccccchhhhhhhcccCCHHHHHHHHHHhccCcccccccCCchhHHHHHHHHHHHHHhccCchhhhcchh
Confidence 5899999999999999999999999999999999999998632 23568988876655 44343333321
Q ss_pred ------------CCCCCCCCccchhhhccCcHHHHHhcCCCCCccccccccccchhhhhHHHHHHHhhhhcccccccccc
Q 029289 69 ------------ASEKYDPCTEKHSVVYFNQPEVQKALHVIPAVALAKWETCRWHQQHALMIFFIFTALQWGVVNNNWLD 136 (196)
Q Consensus 69 ------------~~~~~~~c~~~~~~~ylN~~~Vr~aLhv~~~~~~~~w~~c~~~~~~~~~~~~~~~~~~~~~v~~~~~d 136 (196)
....|++|.+.+.++|||+|+||+||||+...++ +|+.||+. |...|.+
T Consensus 286 C~~~~~~~~~~~~~~~~~~c~~~~~~~ylN~~~VrkALh~~~~~~~-~W~~Cn~~------------------v~~~~~~ 346 (454)
T KOG1282|consen 286 CYPTSYELKKPTDCYGYDPCLSDYAEKYLNRPEVRKALHANKTSIG-KWERCNDE------------------VNYNYND 346 (454)
T ss_pred hccccccccccccccccCCchhhhHHHhcCCHHHHHHhCCCCCCCC-cccccChh------------------hhccccc
Confidence 1345688988777999999999999999886422 79999998 7767899
Q ss_pred CCcchHHHHHHHHHcC-CeEEEeecCcccccchhhHHHHHHHcCCCCcccccccccC-CcCC
Q 029289 137 SPRIVLDIYHELIHSG-LRIWMFSGDTDAVIPVTSARYSIDALNLPTVKPWRAWYDE-GQVG 196 (196)
Q Consensus 137 ~~~s~~~~~~~LL~~g-irvLiYsGd~D~icn~~Gt~~~i~~L~w~~~~~~~~W~~~-gqva 196 (196)
...+++|++.+++.++ +||||||||+|++||++||++||++|+++.+++||||+++ +|||
T Consensus 347 ~~~sm~p~~~~~~~~~~~rvliysGD~D~~~p~~gt~~~i~~L~~~~~~~~~pW~~~~~qva 408 (454)
T KOG1282|consen 347 DIKSMLPIHKKLIASGGYRVLIYSGDHDLVVPFLGTQAWIKSLNLSITDEWRPWYHKGGQVA 408 (454)
T ss_pred CccchHHHHHHHhhcCceEEEEEeCCcceeCcchhhHHHHHhccCccccCccCCccCCCcee
Confidence 9999999999999865 9999999999999999999999999999999999999995 7986
No 2
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=100.00 E-value=1.8e-35 Score=250.57 Aligned_cols=175 Identities=21% Similarity=0.364 Sum_probs=134.9
Q ss_pred CeeecCcCCccccchhHHHHHHHhcCCCHHHHHHHhccCCccc----cccccchhhhHHhHHHhhhhhcccCCCC---CC
Q 029289 1 MQVGNALTDDYHDYLGLFQFWWSAGLISDDTYKQLKLLCDYES----FIHPSCTASVSQSNRLLKRMHVVGHASE---KY 73 (196)
Q Consensus 1 i~IGNg~~dp~~q~~~~~~~a~~~glI~~~~~~~~~~~C~~~~----~~~~~C~~~~~~~~~~~~~~~~~~~~~~---~~ 73 (196)
|+||||||||..|..++.+|+|.||||++++++.+++.|.... +....|..+......+.+.++.++.... .+
T Consensus 89 i~IGNg~t~~~~~~~~~~~~~~~~gli~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (319)
T PLN02213 89 YMLGNPVTYMDFEQNFRIPYAYGMGLISDEIYEPMKRICNGNYYNVDPSNTQCLKLTEEYHKCTAKINIHHILTPDCDVT 168 (319)
T ss_pred EEeCCCCCCccccchhHhhHHHhcCCCCHHHHHHHHHhcCCCccCCCCCcHHHHHHHHHHHHHHhcCCHhhcccCcccCc
Confidence 6899999999999999999999999999999999999996321 2345687766544444444444332211 11
Q ss_pred ----CCCcc---chhhhccCcHHHHHhcCCCCCccccccccccchhhhhHHHHHHHhhhhccccccccccCCcchHHHHH
Q 029289 74 ----DPCTE---KHSVVYFNQPEVQKALHVIPAVALAKWETCRWHQQHALMIFFIFTALQWGVVNNNWLDSPRIVLDIYH 146 (196)
Q Consensus 74 ----~~c~~---~~~~~ylN~~~Vr~aLhv~~~~~~~~w~~c~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~s~~~~~~ 146 (196)
..|.. ..+..|||+++||+||||++.. ..+|+.|+.. |. +.....++++.+.
T Consensus 169 ~~~~~~c~~~~~~~~~~ylN~~~V~~aL~v~~~~-~~~w~~c~~~------------------v~--~~~d~~~~~~~~~ 227 (319)
T PLN02213 169 NVTSPDCYYYPYHLIECWANDESVREALHIEKGS-KGKWARCNRT------------------IP--YNHDIVSSIPYHM 227 (319)
T ss_pred cCCCCCcccchhHHHHHHhCCHHHHHHhCcCCCC-CCCCccCCcc------------------cc--cccccccchHHHH
Confidence 24653 3578999999999999997531 1379999988 54 4333345666666
Q ss_pred HHHHcCCeEEEeecCcccccchhhHHHHHHHcCCCCcccccccccCCcCC
Q 029289 147 ELIHSGLRIWMFSGDTDAVIPVTSARYSIDALNLPTVKPWRAWYDEGQVG 196 (196)
Q Consensus 147 ~LL~~girvLiYsGd~D~icn~~Gt~~~i~~L~w~~~~~~~~W~~~gqva 196 (196)
++|.+|+||||||||+|++||++|+++|+++|+|+++.+|+||++++|+|
T Consensus 228 ~~l~~~i~VliY~Gd~D~icn~~g~~~wi~~L~w~~~~~~~~w~~~~~~~ 277 (319)
T PLN02213 228 NNSISGYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIA 277 (319)
T ss_pred HHHhcCceEEEEECCcCeeCCcHhHHHHHHhcCCCCCCCCccccCCCEee
Confidence 66667999999999999999999999999999999999999999887764
No 3
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=100.00 E-value=2.1e-34 Score=252.35 Aligned_cols=175 Identities=21% Similarity=0.368 Sum_probs=136.0
Q ss_pred CeeecCcCCccccchhHHHHHHHhcCCCHHHHHHHhccCCcc----ccccccchhhhHHhHHHhhhhhcccCCCC---C-
Q 029289 1 MQVGNALTDDYHDYLGLFQFWWSAGLISDDTYKQLKLLCDYE----SFIHPSCTASVSQSNRLLKRMHVVGHASE---K- 72 (196)
Q Consensus 1 i~IGNg~~dp~~q~~~~~~~a~~~glI~~~~~~~~~~~C~~~----~~~~~~C~~~~~~~~~~~~~~~~~~~~~~---~- 72 (196)
|+||||++||..|..++.+|+|+||||++++|+.+++.|... ...+..|..+......+.+.++.++.... .
T Consensus 203 i~iGNg~t~~~~~~~~~~~y~~~~glI~~~~~~~i~~~c~~~~~~~~~~~~~C~~~~~~~~~~~~~~n~yni~~~~~~~~ 282 (433)
T PLN03016 203 YMLGNPVTYMDFEQNFRIPYAYGMGLISDEIYEPMKRICNGNYYNVDPSNTQCLKLTEEYHKCTAKINIHHILTPDCDVT 282 (433)
T ss_pred eEecCCCcCchhhhhhHHHHHHhcCCCCHHHHHHHHHHhccccccCCCchHHHHHHHHHHHHHhcCCChhhccCCccccc
Confidence 689999999999999999999999999999999999999632 12345687766555455554444432211 0
Q ss_pred ---CCCCcc---chhhhccCcHHHHHhcCCCCCccccccccccchhhhhHHHHHHHhhhhccccccccccCCcchHHHHH
Q 029289 73 ---YDPCTE---KHSVVYFNQPEVQKALHVIPAVALAKWETCRWHQQHALMIFFIFTALQWGVVNNNWLDSPRIVLDIYH 146 (196)
Q Consensus 73 ---~~~c~~---~~~~~ylN~~~Vr~aLhv~~~~~~~~w~~c~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~s~~~~~~ 146 (196)
..+|.. ..+..|||+++||+||||++.. ..+|..|+.. |. +.....++++.+.
T Consensus 283 ~~~~~~c~~~~~~~~~~ylN~~~V~~aL~v~~~~-~~~w~~cn~~------------------v~--~~~d~~~~~~~~~ 341 (433)
T PLN03016 283 NVTSPDCYYYPYHLIECWANDESVREALHIEKGS-KGKWARCNRT------------------IP--YNHDIVSSIPYHM 341 (433)
T ss_pred ccCCCcccccchHHHHHHhCCHHHHHHhCCCCCC-CCCCccCCcc------------------cc--cccccchhhHHHH
Confidence 124653 3578999999999999998531 1379999988 53 3333345666666
Q ss_pred HHHHcCCeEEEeecCcccccchhhHHHHHHHcCCCCcccccccccCCcCC
Q 029289 147 ELIHSGLRIWMFSGDTDAVIPVTSARYSIDALNLPTVKPWRAWYDEGQVG 196 (196)
Q Consensus 147 ~LL~~girvLiYsGd~D~icn~~Gt~~~i~~L~w~~~~~~~~W~~~gqva 196 (196)
+++.+|+||||||||+|++||++||++|+++|+|+++++|+||++++|+|
T Consensus 342 ~~l~~~irVLiY~Gd~D~icn~~Gt~~wi~~L~w~~~~~~~~w~~~~~~~ 391 (433)
T PLN03016 342 NNSISGYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIA 391 (433)
T ss_pred HHHhcCceEEEEECCccccCCcHhHHHHHHhCCCCCCCCcccccCCCEee
Confidence 67777999999999999999999999999999999999999999888764
No 4
>PLN02209 serine carboxypeptidase
Probab=100.00 E-value=1e-33 Score=248.18 Aligned_cols=175 Identities=22% Similarity=0.348 Sum_probs=134.5
Q ss_pred CeeecCcCCccccchhHHHHHHHhcCCCHHHHHHHhccCCcc----ccccccchhhhHHhHHHhhhhhcccCC-------
Q 029289 1 MQVGNALTDDYHDYLGLFQFWWSAGLISDDTYKQLKLLCDYE----SFIHPSCTASVSQSNRLLKRMHVVGHA------- 69 (196)
Q Consensus 1 i~IGNg~~dp~~q~~~~~~~a~~~glI~~~~~~~~~~~C~~~----~~~~~~C~~~~~~~~~~~~~~~~~~~~------- 69 (196)
|+||||++||..|..++.+|+|+||||++++|+.+++.|... .+.+..|..++.....+.+.++.++..
T Consensus 205 i~igng~td~~~q~~~~~~y~~~~glI~~~~~~~~~~~c~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~~~~~~~~c~~~ 284 (437)
T PLN02209 205 YVLGNPITHIEFEQNFRIPYAHGMSLISDELYESLKRICKGNYFSVDPSNKKCLKLVEEYHKCTDNINSHHTLIANCDDS 284 (437)
T ss_pred EEecCcccChhhhhhhHHHHHhccCCCCHHHHHHHHHhcccccccCCCChHHHHHHHHHHHHHhhcCCcccccccccccc
Confidence 689999999999999999999999999999999999999631 123456877766554444444432111
Q ss_pred --CCCCCCCcc---chhhhccCcHHHHHhcCCCCCccccccccccchhhhhHHHHHHHhhhhccccccccccCCcchHHH
Q 029289 70 --SEKYDPCTE---KHSVVYFNQPEVQKALHVIPAVALAKWETCRWHQQHALMIFFIFTALQWGVVNNNWLDSPRIVLDI 144 (196)
Q Consensus 70 --~~~~~~c~~---~~~~~ylN~~~Vr~aLhv~~~~~~~~w~~c~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~s~~~~ 144 (196)
.....+|.. ..+..|||+|+||+||||+... ...|..|+.. + .+.+...++++.
T Consensus 285 ~~~~~~~~c~~~~~~~~~~ylN~~~V~~aL~v~~~~-~~~w~~~~~~------------------~--~~~~d~~~~~~~ 343 (437)
T PLN02209 285 NTQHISPDCYYYPYHLVECWANNESVREALHVDKGS-IGEWIRDHRG------------------I--PYKSDIRSSIPY 343 (437)
T ss_pred ccccCCCCcccccHHHHHHHhCCHHHHHHhCCCCCC-CCCCccccch------------------h--hcccchhhhHHH
Confidence 111234643 3578999999999999998532 2479999865 3 244444456666
Q ss_pred HHHHHHcCCeEEEeecCcccccchhhHHHHHHHcCCCCcccccccccCCcCC
Q 029289 145 YHELIHSGLRIWMFSGDTDAVIPVTSARYSIDALNLPTVKPWRAWYDEGQVG 196 (196)
Q Consensus 145 ~~~LL~~girvLiYsGd~D~icn~~Gt~~~i~~L~w~~~~~~~~W~~~gqva 196 (196)
+.++|.+|+|||||+||+|++||++||++|+++|+|+++++|++|++++|+|
T Consensus 344 ~~~~l~~girVLiY~GD~D~icn~~Gte~wi~~L~w~~~~~~~~w~~~~q~a 395 (437)
T PLN02209 344 HMNNSINGYRSLIFSGDHDITMPFQATQAWIKSLNYSIIDDWRPWMIKGQIA 395 (437)
T ss_pred HHHHHhcCceEEEEECCccccCCcHhHHHHHHhcCCccCCCeeeeEECCEee
Confidence 6666668999999999999999999999999999999999999999988875
No 5
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=99.98 E-value=1.2e-32 Score=243.33 Aligned_cols=174 Identities=23% Similarity=0.429 Sum_probs=132.7
Q ss_pred CeeecCcCCccccchhHHHHHHH-------hcCCCHHHHHHHhc---cC-------Cccc-cccccchhhhHHhHHHh--
Q 029289 1 MQVGNALTDDYHDYLGLFQFWWS-------AGLISDDTYKQLKL---LC-------DYES-FIHPSCTASVSQSNRLL-- 60 (196)
Q Consensus 1 i~IGNg~~dp~~q~~~~~~~a~~-------~glI~~~~~~~~~~---~C-------~~~~-~~~~~C~~~~~~~~~~~-- 60 (196)
|+|||||+||..|+.++.+|+|. +|+|++++|+.+++ .| .... .....|..+...+....
T Consensus 209 i~IGNg~~dp~~q~~~~~~~a~~~~~~~~~~~li~~~~~~~~~~~~~~c~~~~~~c~~~~~~~~~~c~~a~~~c~~~~~~ 288 (462)
T PTZ00472 209 LAVGNGLTDPYTQYASYPRLAWDWCKEKLGAPCVSEEAYDEMSSMVPACQKKIKECNSNPDDADSSCSVARALCNEYIAV 288 (462)
T ss_pred EEEeccccChhhhcccHHHHhhhcccccCCCCccCHHHHHHHHHHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHHHH
Confidence 68999999999999999999996 58999999998875 24 3211 12345755443332221
Q ss_pred ---hhhhcccCCCC-CCCCCcc-chhhhccCcHHHHHhcCCCCCccccccccccchhhhhHHHHHHHhhhhcccccccc-
Q 029289 61 ---KRMHVVGHASE-KYDPCTE-KHSVVYFNQPEVQKALHVIPAVALAKWETCRWHQQHALMIFFIFTALQWGVVNNNW- 134 (196)
Q Consensus 61 ---~~~~~~~~~~~-~~~~c~~-~~~~~ylN~~~Vr~aLhv~~~~~~~~w~~c~~~~~~~~~~~~~~~~~~~~~v~~~~- 134 (196)
..++.|+.... ..++|.. ..+..|||+|+||+||||+. .+|+.|+.. |...+
T Consensus 289 ~~~~g~n~Ydi~~~c~~~~c~~~~~~~~yLN~~~Vq~AL~v~~----~~w~~c~~~------------------V~~~~~ 346 (462)
T PTZ00472 289 YSATGLNNYDIRKPCIGPLCYNMDNTIAFMNREDVQSSLGVKP----ATWQSCNME------------------VNLMFE 346 (462)
T ss_pred HHhcCCChhheeccCCCCCccCHHHHHHHhCCHHHHHHhCCCC----CCceeCCHH------------------HHHHhh
Confidence 22344544322 1234754 46899999999999999984 279999988 54444
Q ss_pred ccCCcchHHHHHHHHHcCCeEEEeecCcccccchhhHHHHHHHcCCCCcc-----ccccc-ccCCcCC
Q 029289 135 LDSPRIVLDIYHELIHSGLRIWMFSGDTDAVIPVTSARYSIDALNLPTVK-----PWRAW-YDEGQVG 196 (196)
Q Consensus 135 ~d~~~s~~~~~~~LL~~girvLiYsGd~D~icn~~Gt~~~i~~L~w~~~~-----~~~~W-~~~gqva 196 (196)
.|.++++.+.++.||++|+|||||+||.|++||+.|+++|+++|+|++++ +|++| .+++|+|
T Consensus 347 ~D~~~~~~~~l~~LL~~gikVLiYnGd~D~icn~~Gt~~wi~~L~w~g~~~f~~a~~~~w~~~~~~v~ 414 (462)
T PTZ00472 347 MDWMKNFNYTVPGLLEDGVRVMIYAGDMDFICNWIGNKAWTLALQWPGNAEFNAAPDVPFSAVDGRWA 414 (462)
T ss_pred hccccchHHHHHHHHhcCceEEEEECCcCeecCcHhHHHHHHhCCCCCccchhhcCccccEecCCEec
Confidence 46678899999999999999999999999999999999999999999975 56899 4677664
No 6
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=99.97 E-value=2.9e-32 Score=236.86 Aligned_cols=177 Identities=24% Similarity=0.392 Sum_probs=129.0
Q ss_pred CeeecCcCCccccchhHHHHHHHhcCCCHHHHHHHhccCCcc---ccccccchhhhHHhHH------HhhhhhcccCCCC
Q 029289 1 MQVGNALTDDYHDYLGLFQFWWSAGLISDDTYKQLKLLCDYE---SFIHPSCTASVSQSNR------LLKRMHVVGHASE 71 (196)
Q Consensus 1 i~IGNg~~dp~~q~~~~~~~a~~~glI~~~~~~~~~~~C~~~---~~~~~~C~~~~~~~~~------~~~~~~~~~~~~~ 71 (196)
|+||||++||..|..++.+|+|.||+|++++++.+++.|... ......|......+.. +...++.|+....
T Consensus 174 i~IGng~~dp~~~~~s~~~~~~~~gli~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~n~Ydi~~~ 253 (415)
T PF00450_consen 174 IAIGNGWIDPRIQYNSYADYAYYHGLIDDQQYDDLNKACEACPQCQKAITECAAALDELSCQYAISQCNGGINPYDIRQP 253 (415)
T ss_dssp EEEESE-SBHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHTTSHSSSCCHHHHHHHHHHHHHHCHHHHHHTTSETTSTTSE
T ss_pred ceecCccccccccceeecccccccCcccHHHHHHHHHHhhccccccchhhHHHHHHHhhhhhcccccccCCcceeeeecc
Confidence 689999999999999999999999999999999999988532 2233567655544332 2234555543222
Q ss_pred C-------------CCCCccchhhhccCcHHHHHhcCCCCCccccccccccchhhhhHHHHHHHhhhhcccc-c-ccccc
Q 029289 72 K-------------YDPCTEKHSVVYFNQPEVQKALHVIPAVALAKWETCRWHQQHALMIFFIFTALQWGVV-N-NNWLD 136 (196)
Q Consensus 72 ~-------------~~~c~~~~~~~ylN~~~Vr~aLhv~~~~~~~~w~~c~~~~~~~~~~~~~~~~~~~~~v-~-~~~~d 136 (196)
. .+++....+..|||+++||+||||+... ..+|+.|+.. | . ....+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~yln~~~Vr~aL~v~~~~-~~~w~~~~~~------------------V~~~~~~~d 314 (415)
T PF00450_consen 254 CYNPSRSSYDNSPSNDPPDDDYLEAYLNRPDVREALHVPVDS-NVNWQSCNDA------------------VNFNWLYDD 314 (415)
T ss_dssp ETT-SHCTTCCCCTTTTTCHHHHHHHHTSHHHHHHTT-STTT-SSS--SB-HH------------------HHHHCCTCC
T ss_pred ccccccccccccccccccchhhHHHHhccHHHHHhhCCCccc-CCcccccCcc------------------ccccccccc
Confidence 1 1122346789999999999999997211 2589999987 5 1 12467
Q ss_pred CCcchHHHHHHHHHcCCeEEEeecCcccccchhhHHHHHHHcCCCCccccccccc--CCcCC
Q 029289 137 SPRIVLDIYHELIHSGLRIWMFSGDTDAVIPVTSARYSIDALNLPTVKPWRAWYD--EGQVG 196 (196)
Q Consensus 137 ~~~s~~~~~~~LL~~girvLiYsGd~D~icn~~Gt~~~i~~L~w~~~~~~~~W~~--~gqva 196 (196)
.+.++.+.++.||++|+|||||+||+|++||+.||++||++|+|+++++|++|.. ++++|
T Consensus 315 ~~~~~~~~l~~lL~~~irVLiy~Gd~D~i~n~~Gt~~~i~~L~w~~~~~f~~~~~~~~~~~~ 376 (415)
T PF00450_consen 315 FMPSSIPDLPELLDNGIRVLIYNGDLDLICNFLGTERWIDNLNWSGKDGFRQWPRKVNGQVA 376 (415)
T ss_dssp C-SBCHHHHHHHHHTT-EEEEEEETT-SSS-HHHHHHHHHCTECTEEEEEEEEEEETTCSEE
T ss_pred ccccchhhhhhhhhccceeEEeccCCCEEEEeccchhhhhccccCccccccccccccccccc
Confidence 7889999999999999999999999999999999999999999999999999986 66653
No 7
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=4.5e-15 Score=123.24 Aligned_cols=165 Identities=13% Similarity=0.120 Sum_probs=113.7
Q ss_pred CeeecCcCCccccchhHHHHHHHhcCCCHHHHHHHhc---cCCcc-cc----ccccchhhhHH-hHHHhhhhhcccCC--
Q 029289 1 MQVGNALTDDYHDYLGLFQFWWSAGLISDDTYKQLKL---LCDYE-SF----IHPSCTASVSQ-SNRLLKRMHVVGHA-- 69 (196)
Q Consensus 1 i~IGNg~~dp~~q~~~~~~~a~~~glI~~~~~~~~~~---~C~~~-~~----~~~~C~~~~~~-~~~~~~~~~~~~~~-- 69 (196)
+++|+.||+|+.-..+..||++..+++++...++..+ .|.-. +. ....|-...+. +.+..+..+-|+..
T Consensus 159 VaLGDSWISP~D~V~SWGP~L~~~S~LDD~GLds~ns~A~k~~~~v~~g~~~~AT~~Wg~~e~li~~~sn~VdfYNil~~ 238 (414)
T KOG1283|consen 159 VALGDSWISPEDFVFSWGPLLKHVSRLDDNGLDSSNSGAEKGKGGVDGGKWGGATGGWGGGENLISRESNGVDFYNILTK 238 (414)
T ss_pred EEccCcccChhHhhhcchHHHHhhhhhcccCccchhhhHHhhcccccCCccccccccccCcCcceeecccCcceeeeecc
Confidence 5899999999999999999999999999998877655 34210 00 00111100000 00000000000000
Q ss_pred -----------------------CCCCC-CCccchhhhccCcHHHHHhcCCCCCccccccccccchhhhhHHHHHHHhhh
Q 029289 70 -----------------------SEKYD-PCTEKHSVVYFNQPEVQKALHVIPAVALAKWETCRWHQQHALMIFFIFTAL 125 (196)
Q Consensus 70 -----------------------~~~~~-~c~~~~~~~ylN~~~Vr~aLhv~~~~~~~~w~~c~~~~~~~~~~~~~~~~~ 125 (196)
..... +-..+.+.++||-| ||++|++.+.. ..|..-+..
T Consensus 239 t~~d~~~~ss~~~~~~~~~~rrl~~~~~~~~~~D~L~~lM~g~-vrkkLgIip~~--~~wGgqsg~-------------- 301 (414)
T KOG1283|consen 239 TLGDQYSLSSRAAMTPEEVMRRLLVRFVGDEDRDKLSDLMNGP-VRKKLGIIPGG--VKWGGQSGD-------------- 301 (414)
T ss_pred CCCcchhhhhhhhcchHHHHHHHHhccCcchhHHHHHHHhccc-ccccccccCCC--CcccCcCCc--------------
Confidence 00000 01124588999987 99999998764 589888877
Q ss_pred hcccccccc-ccCCcchHHHHHHHHHcCCeEEEeecCcccccchhhHHHHHHHcCCCCcccc
Q 029289 126 QWGVVNNNW-LDSPRIVLDIYHELIHSGLRIWMFSGDTDAVIPVTSARYSIDALNLPTVKPW 186 (196)
Q Consensus 126 ~~~~v~~~~-~d~~~s~~~~~~~LL~~girvLiYsGd~D~icn~~Gt~~~i~~L~w~~~~~~ 186 (196)
+..+. .|.+++++..+.+||++|+.|-||||++|.||++.|+++|+.+|.|+....+
T Consensus 302 ----vFt~lq~dFMKPvi~~VdeLL~~Gv~V~VynG~lDlIc~T~G~~AWv~~l~w~~~p~f 359 (414)
T KOG1283|consen 302 ----VFTKLQGDFMKPVISKVDELLNNGVNVTVYNGQLDLICATMGTEAWVEKLEWSAKPSF 359 (414)
T ss_pred ----hHHHhhhhhcccHHHHHHHHHhCCceEEEEecccchhhcccchhhhhhheecCCCCcc
Confidence 43333 6889999999999999999999999999999999999999999999998754
No 8
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=99.18 E-value=2.3e-11 Score=106.80 Aligned_cols=164 Identities=16% Similarity=0.216 Sum_probs=115.9
Q ss_pred CeeecC-cCCccccchhHHHHHHH----hcCCCHHHHHHHhccCCccc-----------cccccchhhhHHhHHHhh---
Q 029289 1 MQVGNA-LTDDYHDYLGLFQFWWS----AGLISDDTYKQLKLLCDYES-----------FIHPSCTASVSQSNRLLK--- 61 (196)
Q Consensus 1 i~IGNg-~~dp~~q~~~~~~~a~~----~glI~~~~~~~~~~~C~~~~-----------~~~~~C~~~~~~~~~~~~--- 61 (196)
++|||| +|||..|+..|.++|.. ++..+.+..+.+.+.|+... .....|..+...+..+..
T Consensus 235 vligng~~t~Pl~~~~~y~~~a~~~~~~~~~l~~e~~~~~~~~~~~d~~~~l~~g~~~~~~~~~c~~~~~~~~~~~~~~~ 314 (498)
T COG2939 235 VLIGNGLWTDPLTQYLTYEPIAAEKGPYDGVLSSEECTKAEKYCAGDYCLALMKGCYDSGSLQPCENASAYLTGLMREYV 314 (498)
T ss_pred eeecCCcccChhHHHHHhhhhHhhcCCCCCcCcHHHHHHHHHHhhhhhHhhhccCCCCchhhhHHHHHHHHHHhcchhhh
Confidence 589999 99999999999999985 45677777888888775321 112345544333322111
Q ss_pred ---h---hhcccCCCC-CCC----CCcc--chhhhccCcHHHHHhcCCCCCccccccccccchhhhhHHHHHHHhhhhcc
Q 029289 62 ---R---MHVVGHASE-KYD----PCTE--KHSVVYFNQPEVQKALHVIPAVALAKWETCRWHQQHALMIFFIFTALQWG 128 (196)
Q Consensus 62 ---~---~~~~~~~~~-~~~----~c~~--~~~~~ylN~~~Vr~aLhv~~~~~~~~w~~c~~~~~~~~~~~~~~~~~~~~ 128 (196)
. .+.|++... .+. -|.+ ..+.+|++-+.++++++.... .|..|...
T Consensus 315 ~r~~~~~~n~y~~r~~~~d~g~~~~~y~~~~~~ld~~~~~~~~~~~~~~~d----~~~~c~t~----------------- 373 (498)
T COG2939 315 GRAGGRLLNVYDIREECRDPGLGGSCYDTLSTSLDYFNFDPEQEVNDPEVD----NISGCTTD----------------- 373 (498)
T ss_pred ccccccccccccchhhcCCCCcccccccceeeccccccccchhcccccccc----chhccchH-----------------
Confidence 0 222322111 111 2443 357789998889999886543 79999988
Q ss_pred cccccc----ccCCcchHHHHHHHHHcCCeEEEeecCcccccchhhHHHHHHHcCCCCcccc
Q 029289 129 VVNNNW----LDSPRIVLDIYHELIHSGLRIWMFSGDTDAVIPVTSARYSIDALNLPTVKPW 186 (196)
Q Consensus 129 ~v~~~~----~d~~~s~~~~~~~LL~~girvLiYsGd~D~icn~~Gt~~~i~~L~w~~~~~~ 186 (196)
+..+| .+..+.....+..++.+|+.+++|.||.|.+||+.|+++|..+|.|.+...|
T Consensus 374 -a~~~f~~~~~~~~~~~~~~~~~~lv~~~~~~~~~gd~d~icn~~~~~a~~~~Lkw~~~~g~ 434 (498)
T COG2939 374 -AMTDFLTFTGGWAKPSRYLVLNLLVNNVWILLYAGDKDFICNLRGNMALDPKLKWLGASGY 434 (498)
T ss_pred -HHHhhhhhcCCcccccHHHHhhhhhcCCceeeeecCchhHhhhhhhcccCCcceEeeecch
Confidence 44445 3555677777888888999999999999999999999999999999998754
No 9
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=78.76 E-value=1.4 Score=26.24 Aligned_cols=32 Identities=22% Similarity=0.077 Sum_probs=25.5
Q ss_pred CcCCccccchhHHHHHHHhcCCCHHHHHHHhc
Q 029289 6 ALTDDYHDYLGLFQFWWSAGLISDDTYKQLKL 37 (196)
Q Consensus 6 g~~dp~~q~~~~~~~a~~~glI~~~~~~~~~~ 37 (196)
|.+||..-..--.+=|+..||||.+.+..+.+
T Consensus 12 Giidp~tg~~lsv~~A~~~glId~~~~~~L~e 43 (45)
T PF00681_consen 12 GIIDPETGERLSVEEAIQRGLIDSDTAQKLLE 43 (45)
T ss_dssp SEEETTTTEEEEHHHHHHTTSS-HHHHHHHHH
T ss_pred eEEeCCCCeEEcHHHHHHCCCcCHHHHHHHHc
Confidence 88899877666678899999999999887754
No 10
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=74.85 E-value=3.7 Score=28.79 Aligned_cols=29 Identities=28% Similarity=0.300 Sum_probs=26.8
Q ss_pred CCeEEEeecCcccccchhhHHHHHHHcCC
Q 029289 152 GLRIWMFSGDTDAVIPVTSARYSIDALNL 180 (196)
Q Consensus 152 girvLiYsGd~D~icn~~Gt~~~i~~L~w 180 (196)
-.+|||.+|..|.+.|+.+.++..+.|.=
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l~~ 62 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARLPG 62 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHCCC
Confidence 38999999999999999999999999864
No 11
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=69.03 E-value=5.2 Score=31.22 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=26.8
Q ss_pred cCCeEEEeecCcccccchhhHHHHHHHcC
Q 029289 151 SGLRIWMFSGDTDAVIPVTSARYSIDALN 179 (196)
Q Consensus 151 ~girvLiYsGd~D~icn~~Gt~~~i~~L~ 179 (196)
...+|||.+|+.|.+||..-+..+.++|.
T Consensus 143 ~~~P~li~hG~~D~~Vp~~~s~~~~~~L~ 171 (213)
T PF00326_consen 143 IKPPVLIIHGENDPRVPPSQSLRLYNALR 171 (213)
T ss_dssp GGSEEEEEEETTBSSSTTHHHHHHHHHHH
T ss_pred CCCCEEEEccCCCCccCHHHHHHHHHHHH
Confidence 46899999999999999999999998886
No 12
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=68.11 E-value=5.2 Score=33.50 Aligned_cols=31 Identities=13% Similarity=0.315 Sum_probs=27.8
Q ss_pred CCeEEEeecCcccccchhhHHHHHHHcCCCC
Q 029289 152 GLRIWMFSGDTDAVIPVTSARYSIDALNLPT 182 (196)
Q Consensus 152 girvLiYsGd~D~icn~~Gt~~~i~~L~w~~ 182 (196)
+.+|+||+|..|-++|+..+...++++.=.+
T Consensus 219 ~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~G 249 (290)
T PF03583_consen 219 TVPVLIYQGTADEVVPPADTDALVAKWCAAG 249 (290)
T ss_pred CCCEEEEecCCCCCCChHHHHHHHHHHHHcC
Confidence 4899999999999999999999999885555
No 13
>PF07849 DUF1641: Protein of unknown function (DUF1641); InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long.
Probab=57.74 E-value=3.7 Score=24.12 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=13.8
Q ss_pred hhhhccCcHHHHHhcCC
Q 029289 80 HSVVYFNQPEVQKALHV 96 (196)
Q Consensus 80 ~~~~ylN~~~Vr~aLhv 96 (196)
.+-.-|++||||++|++
T Consensus 15 gl~~~l~DpdvqrgL~~ 31 (42)
T PF07849_consen 15 GLLRALRDPDVQRGLGF 31 (42)
T ss_pred HHHHHHcCHHHHHHHHH
Confidence 34566999999999986
No 14
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=56.89 E-value=11 Score=33.95 Aligned_cols=39 Identities=13% Similarity=0.159 Sum_probs=33.7
Q ss_pred chHHHHHHHHHcCCeEEEeecCcccccchhhHHHHHHHc
Q 029289 140 IVLDIYHELIHSGLRIWMFSGDTDAVIPVTSARYSIDAL 178 (196)
Q Consensus 140 s~~~~~~~LL~~girvLiYsGd~D~icn~~Gt~~~i~~L 178 (196)
..-|.|..+.++|=|+|+|+|-.|.+++..+|.++-+++
T Consensus 341 a~~pDLsaF~~~GGKLI~~HG~aD~~I~p~~ti~YY~~V 379 (474)
T PF07519_consen 341 ATDPDLSAFRARGGKLILYHGWADPLIPPQGTIDYYERV 379 (474)
T ss_pred CCCcCHHHHHhcCCeEEEEecCCCCccCCCcHHHHHHHH
Confidence 344667788889999999999999999999999987666
No 15
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=56.84 E-value=11 Score=30.44 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=22.1
Q ss_pred CCeEEEeecCcccccchhhHHHHHHH
Q 029289 152 GLRIWMFSGDTDAVIPVTSARYSIDA 177 (196)
Q Consensus 152 girvLiYsGd~D~icn~~Gt~~~i~~ 177 (196)
+++++|++|+.|..|+....++.++.
T Consensus 169 ~~P~~v~hG~~D~tV~~~n~~~~~~q 194 (220)
T PF10503_consen 169 GYPRIVFHGTADTTVNPQNADQLVAQ 194 (220)
T ss_pred CCCEEEEecCCCCccCcchHHHHHHH
Confidence 68999999999999999887776554
No 16
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=56.41 E-value=14 Score=26.31 Aligned_cols=34 Identities=21% Similarity=0.440 Sum_probs=28.4
Q ss_pred HHHHHcCCeEEEeecCcccccchhhHHHHHHHcC
Q 029289 146 HELIHSGLRIWMFSGDTDAVIPVTSARYSIDALN 179 (196)
Q Consensus 146 ~~LL~~girvLiYsGd~D~icn~~Gt~~~i~~L~ 179 (196)
+.+-...++|++..|..|.+++....+...+++.
T Consensus 98 ~~~~~~~~pv~~i~g~~D~~~~~~~~~~~~~~~~ 131 (145)
T PF12695_consen 98 EDLAKIRIPVLFIHGENDPLVPPEQVRRLYEALP 131 (145)
T ss_dssp HHHTTTTSEEEEEEETT-SSSHHHHHHHHHHHHC
T ss_pred hhhhccCCcEEEEEECCCCcCCHHHHHHHHHHcC
Confidence 4454567899999999999999999999988887
No 17
>PRK13604 luxD acyl transferase; Provisional
Probab=55.10 E-value=17 Score=30.87 Aligned_cols=28 Identities=11% Similarity=0.271 Sum_probs=26.0
Q ss_pred CCeEEEeecCcccccchhhHHHHHHHcC
Q 029289 152 GLRIWMFSGDTDAVIPVTSARYSIDALN 179 (196)
Q Consensus 152 girvLiYsGd~D~icn~~Gt~~~i~~L~ 179 (196)
..+||+.+|+.|.+||..+.+...+++.
T Consensus 202 ~~PvLiIHG~~D~lVp~~~s~~l~e~~~ 229 (307)
T PRK13604 202 DIPFIAFTANNDSWVKQSEVIDLLDSIR 229 (307)
T ss_pred CCCEEEEEcCCCCccCHHHHHHHHHHhc
Confidence 5899999999999999999999999874
No 18
>COG0400 Predicted esterase [General function prediction only]
Probab=54.26 E-value=12 Score=29.96 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=29.0
Q ss_pred cCCeEEEeecCcccccchhhHHHHHHHcCCCCcccc
Q 029289 151 SGLRIWMFSGDTDAVIPVTSARYSIDALNLPTVKPW 186 (196)
Q Consensus 151 ~girvLiYsGd~D~icn~~Gt~~~i~~L~w~~~~~~ 186 (196)
.+.||++-.|..|.+||..-+++..+.|.=.+.+-+
T Consensus 145 ~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~ 180 (207)
T COG0400 145 AGTPILLSHGTEDPVVPLALAEALAEYLTASGADVE 180 (207)
T ss_pred CCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEE
Confidence 579999999999999999999998877743444433
No 19
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=53.87 E-value=16 Score=30.51 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=26.6
Q ss_pred CCeEEEeecCcccccchhhHHHHHHHcCCC
Q 029289 152 GLRIWMFSGDTDAVIPVTSARYSIDALNLP 181 (196)
Q Consensus 152 girvLiYsGd~D~icn~~Gt~~~i~~L~w~ 181 (196)
.++|||..|+.|.+||....+++.+++..+
T Consensus 251 ~~PvLii~G~~D~ivp~~~~~~l~~~i~~~ 280 (330)
T PLN02298 251 SIPFIVLHGSADVVTDPDVSRALYEEAKSE 280 (330)
T ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHhccC
Confidence 589999999999999999999998887543
No 20
>PHA02857 monoglyceride lipase; Provisional
Probab=49.90 E-value=23 Score=28.51 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=26.0
Q ss_pred cCCeEEEeecCcccccchhhHHHHHHHcC
Q 029289 151 SGLRIWMFSGDTDAVIPVTSARYSIDALN 179 (196)
Q Consensus 151 ~girvLiYsGd~D~icn~~Gt~~~i~~L~ 179 (196)
-..+|||..|+.|.+||....+++.+.+.
T Consensus 208 i~~Pvliv~G~~D~i~~~~~~~~l~~~~~ 236 (276)
T PHA02857 208 IKTPILILQGTNNEISDVSGAYYFMQHAN 236 (276)
T ss_pred CCCCEEEEecCCCCcCChHHHHHHHHHcc
Confidence 35899999999999999999999988773
No 21
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=48.58 E-value=16 Score=28.50 Aligned_cols=27 Identities=22% Similarity=0.141 Sum_probs=23.5
Q ss_pred CeEEEeecCcccccchhhHHHHHHHcC
Q 029289 153 LRIWMFSGDTDAVIPVTSARYSIDALN 179 (196)
Q Consensus 153 irvLiYsGd~D~icn~~Gt~~~i~~L~ 179 (196)
-+++|.+|..|.+||....+...++|.
T Consensus 169 p~~~i~hG~~D~vVp~~~~~~~~~~l~ 195 (212)
T TIGR01840 169 PIMSVVHGDADYTVLPGNADEIRDAML 195 (212)
T ss_pred CeEEEEEcCCCceeCcchHHHHHHHHH
Confidence 346899999999999999999888774
No 22
>PF05414 DUF1717: Viral domain of unknown function (DUF1717); InterPro: IPR008745 The domain is found towards the N terminus of the polyprotein of Apple stem grooving virus (strain P-209) (ASGV), Citrus tatter leaf virus and from Apple stem grooving virus (strain Korea) (ASGV) (Pear black necrotic leaf spot virus). Its function is unknown [, ].
Probab=48.49 E-value=11 Score=25.67 Aligned_cols=11 Identities=36% Similarity=0.972 Sum_probs=10.2
Q ss_pred CCeEEEeecCc
Q 029289 152 GLRIWMFSGDT 162 (196)
Q Consensus 152 girvLiYsGd~ 162 (196)
|+||+||-||-
T Consensus 40 gyrVhiyyGdS 50 (101)
T PF05414_consen 40 GYRVHIYYGDS 50 (101)
T ss_pred ccEEEEEecce
Confidence 89999999985
No 23
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=47.70 E-value=19 Score=19.50 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=15.2
Q ss_pred HHHHHhcCCCHHHHHHHhc
Q 029289 19 QFWWSAGLISDDTYKQLKL 37 (196)
Q Consensus 19 ~~a~~~glI~~~~~~~~~~ 37 (196)
.-.|..|+|+++.|+..++
T Consensus 9 ~~l~~~G~IseeEy~~~k~ 27 (31)
T PF09851_consen 9 KELYDKGEISEEEYEQKKA 27 (31)
T ss_pred HHHHHcCCCCHHHHHHHHH
Confidence 3467899999999988654
No 24
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=42.47 E-value=28 Score=26.87 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=24.4
Q ss_pred CCeEEEeecCcccccchhhHHHHHHHcC
Q 029289 152 GLRIWMFSGDTDAVIPVTSARYSIDALN 179 (196)
Q Consensus 152 girvLiYsGd~D~icn~~Gt~~~i~~L~ 179 (196)
..+|||.+|+.|.+||....+.+.+.+.
T Consensus 198 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~ 225 (257)
T TIGR03611 198 QHPVLLIANRDDMLVPYTQSLRLAAALP 225 (257)
T ss_pred CccEEEEecCcCcccCHHHHHHHHHhcC
Confidence 5899999999999999988888877653
No 25
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=42.20 E-value=46 Score=25.30 Aligned_cols=30 Identities=20% Similarity=0.196 Sum_probs=25.5
Q ss_pred cCCeEEEeecCcccccchhhHHHHHHHcCC
Q 029289 151 SGLRIWMFSGDTDAVIPVTSARYSIDALNL 180 (196)
Q Consensus 151 ~girvLiYsGd~D~icn~~Gt~~~i~~L~w 180 (196)
-..+||+..|+.|.++|....+.+.+.+..
T Consensus 192 ~~~Pvlii~g~~D~~~~~~~~~~~~~~~~~ 221 (251)
T TIGR02427 192 IAVPTLCIAGDQDGSTPPELVREIADLVPG 221 (251)
T ss_pred cCCCeEEEEeccCCcCChHHHHHHHHhCCC
Confidence 358999999999999999888888777653
No 26
>PRK10749 lysophospholipase L2; Provisional
Probab=41.49 E-value=24 Score=29.70 Aligned_cols=27 Identities=7% Similarity=0.090 Sum_probs=24.7
Q ss_pred CCeEEEeecCcccccchhhHHHHHHHc
Q 029289 152 GLRIWMFSGDTDAVIPVTSARYSIDAL 178 (196)
Q Consensus 152 girvLiYsGd~D~icn~~Gt~~~i~~L 178 (196)
.+++||..|+.|.+++..+++++.+.+
T Consensus 259 ~~P~Lii~G~~D~vv~~~~~~~~~~~l 285 (330)
T PRK10749 259 TTPLLLLQAEEERVVDNRMHDRFCEAR 285 (330)
T ss_pred CCCEEEEEeCCCeeeCHHHHHHHHHHH
Confidence 589999999999999999999888766
No 27
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=41.42 E-value=27 Score=27.39 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=22.0
Q ss_pred CCeEEEeecCcccccchhhHHHHHHHc
Q 029289 152 GLRIWMFSGDTDAVIPVTSARYSIDAL 178 (196)
Q Consensus 152 girvLiYsGd~D~icn~~Gt~~~i~~L 178 (196)
+.+|++.+|+.|.++|....+...+.|
T Consensus 155 ~~pi~~~hG~~D~vvp~~~~~~~~~~L 181 (216)
T PF02230_consen 155 KTPILIIHGDEDPVVPFEWAEKTAEFL 181 (216)
T ss_dssp TS-EEEEEETT-SSSTHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCcccHHHHHHHHHHH
Confidence 579999999999999999888877666
No 28
>PRK11460 putative hydrolase; Provisional
Probab=41.23 E-value=28 Score=27.81 Aligned_cols=29 Identities=31% Similarity=0.382 Sum_probs=25.5
Q ss_pred cCCeEEEeecCcccccchhhHHHHHHHcC
Q 029289 151 SGLRIWMFSGDTDAVIPVTSARYSIDALN 179 (196)
Q Consensus 151 ~girvLiYsGd~D~icn~~Gt~~~i~~L~ 179 (196)
.+.+||+.+|..|.++|..-.++..+.|.
T Consensus 147 ~~~pvli~hG~~D~vvp~~~~~~~~~~L~ 175 (232)
T PRK11460 147 TATTIHLIHGGEDPVIDVAHAVAAQEALI 175 (232)
T ss_pred CCCcEEEEecCCCCccCHHHHHHHHHHHH
Confidence 46899999999999999999988877774
No 29
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=41.08 E-value=57 Score=27.37 Aligned_cols=43 Identities=19% Similarity=0.272 Sum_probs=35.7
Q ss_pred CcchHHHHHHHHHcCCeEEEeecCcccccchhhHHHHHHHcCCCC
Q 029289 138 PRIVLDIYHELIHSGLRIWMFSGDTDAVIPVTSARYSIDALNLPT 182 (196)
Q Consensus 138 ~~s~~~~~~~LL~~girvLiYsGd~D~icn~~Gt~~~i~~L~w~~ 182 (196)
...++.+++.+.+.|++|.+.+|-.+.. -..|.+++.+.++++
T Consensus 147 lp~al~ly~~l~~~G~kIf~VSgR~e~~--r~aT~~NL~kaGy~~ 189 (275)
T TIGR01680 147 LPETLKNYNKLVSLGFKIIFLSGRLKDK--QAVTEANLKKAGYHT 189 (275)
T ss_pred ChHHHHHHHHHHHCCCEEEEEeCCchhH--HHHHHHHHHHcCCCC
Confidence 4578889999999999999999997754 345899999988764
No 30
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=40.79 E-value=34 Score=28.97 Aligned_cols=29 Identities=14% Similarity=0.201 Sum_probs=25.7
Q ss_pred CCeEEEeecCcccccchhhHHHHHHHcCC
Q 029289 152 GLRIWMFSGDTDAVIPVTSARYSIDALNL 180 (196)
Q Consensus 152 girvLiYsGd~D~icn~~Gt~~~i~~L~w 180 (196)
.+++|+..|+.|.+++..+++.+.+++.-
T Consensus 270 ~~P~Lii~G~~D~vv~~~~~~~~~~~~~~ 298 (332)
T TIGR01607 270 DIPILFIHSKGDCVCSYEGTVSFYNKLSI 298 (332)
T ss_pred CCCEEEEEeCCCCccCHHHHHHHHHhccC
Confidence 47999999999999999999998887653
No 31
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=40.57 E-value=52 Score=26.55 Aligned_cols=43 Identities=12% Similarity=0.352 Sum_probs=37.0
Q ss_pred CcchHHHHHHHHHcCCeEEEeecCcccccchhhHHHHHHHcCCCC
Q 029289 138 PRIVLDIYHELIHSGLRIWMFSGDTDAVIPVTSARYSIDALNLPT 182 (196)
Q Consensus 138 ~~s~~~~~~~LL~~girvLiYsGd~D~icn~~Gt~~~i~~L~w~~ 182 (196)
...++.++..+.+.|++|.+.+|-.+. .-..|++++.+.+.+.
T Consensus 117 ip~a~~l~~~~~~~G~~V~~iT~R~~~--~r~~T~~nL~~~G~~~ 159 (229)
T PF03767_consen 117 IPGALELYNYARSRGVKVFFITGRPES--QREATEKNLKKAGFPG 159 (229)
T ss_dssp ETTHHHHHHHHHHTTEEEEEEEEEETT--CHHHHHHHHHHHTTST
T ss_pred cHHHHHHHHHHHHCCCeEEEEecCCch--hHHHHHHHHHHcCCCc
Confidence 346889999999999999999998887 5678999999998765
No 32
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=40.14 E-value=79 Score=21.56 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=29.0
Q ss_pred CCcchHHHHHHHHHcCCeEEEeecCcccccchhhHHHHHHHcCC
Q 029289 137 SPRIVLDIYHELIHSGLRIWMFSGDTDAVIPVTSARYSIDALNL 180 (196)
Q Consensus 137 ~~~s~~~~~~~LL~~girvLiYsGd~D~icn~~Gt~~~i~~L~w 180 (196)
....+...++.|.++|+++.|.+|.. ....+.+++.+++
T Consensus 25 ~~~~~~~~l~~l~~~g~~i~ivS~~~-----~~~~~~~~~~~~~ 63 (139)
T cd01427 25 LYPGVKEALKELKEKGIKLALATNKS-----RREVLELLEELGL 63 (139)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEeCch-----HHHHHHHHHHcCC
Confidence 34577788899998899999999876 3444556666665
No 33
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=39.46 E-value=61 Score=26.38 Aligned_cols=43 Identities=16% Similarity=0.330 Sum_probs=34.8
Q ss_pred CcchHHHHHHHHHcCCeEEEeecCcccccchhhHHHHHHHcCCCC
Q 029289 138 PRIVLDIYHELIHSGLRIWMFSGDTDAVIPVTSARYSIDALNLPT 182 (196)
Q Consensus 138 ~~s~~~~~~~LL~~girvLiYsGd~D~icn~~Gt~~~i~~L~w~~ 182 (196)
...++.+++.|.++|++|.+-+|-.... -..|.+++.+.++++
T Consensus 122 ip~al~l~~~l~~~G~~Vf~lTGR~e~~--r~~T~~nL~~~G~~~ 164 (229)
T TIGR01675 122 LPEGLKLYQKIIELGIKIFLLSGRWEEL--RNATLDNLINAGFTG 164 (229)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCChHH--HHHHHHHHHHcCCCC
Confidence 4577788999999999999999986532 355889999998875
No 34
>smart00250 PLEC Plectin repeat.
Probab=38.62 E-value=15 Score=20.77 Aligned_cols=26 Identities=19% Similarity=0.078 Sum_probs=17.9
Q ss_pred CcCCccccchhHHHHHHHhcCCCHHH
Q 029289 6 ALTDDYHDYLGLFQFWWSAGLISDDT 31 (196)
Q Consensus 6 g~~dp~~q~~~~~~~a~~~glI~~~~ 31 (196)
|.+||...-.-...=|...|||+.+.
T Consensus 12 Giidp~t~~~lsv~eA~~~glid~~~ 37 (38)
T smart00250 12 GIIDPETGQKLSVEEALRRGLIDPET 37 (38)
T ss_pred EEEcCCCCCCcCHHHHHHcCCCCccc
Confidence 67788665554556677888888653
No 35
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=38.20 E-value=33 Score=30.10 Aligned_cols=28 Identities=11% Similarity=0.149 Sum_probs=25.5
Q ss_pred CCeEEEeecCcccccchhhHHHHHHHcC
Q 029289 152 GLRIWMFSGDTDAVIPVTSARYSIDALN 179 (196)
Q Consensus 152 girvLiYsGd~D~icn~~Gt~~~i~~L~ 179 (196)
.+++||..|+.|.++|...++.+.+++.
T Consensus 324 ~vPvLIi~G~~D~vvp~~~a~~l~~~~~ 351 (395)
T PLN02652 324 TVPFMVLHGTADRVTDPLASQDLYNEAA 351 (395)
T ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 5999999999999999999999988763
No 36
>PLN02872 triacylglycerol lipase
Probab=37.31 E-value=37 Score=29.81 Aligned_cols=28 Identities=32% Similarity=0.527 Sum_probs=25.9
Q ss_pred CCeEEEeecCcccccchhhHHHHHHHcC
Q 029289 152 GLRIWMFSGDTDAVIPVTSARYSIDALN 179 (196)
Q Consensus 152 girvLiYsGd~D~icn~~Gt~~~i~~L~ 179 (196)
.++|+||.|..|.+++....++..+.|.
T Consensus 325 ~~Pv~i~~G~~D~lv~~~dv~~l~~~Lp 352 (395)
T PLN02872 325 SLPLWMGYGGTDGLADVTDVEHTLAELP 352 (395)
T ss_pred CccEEEEEcCCCCCCCHHHHHHHHHHCC
Confidence 5799999999999999999999999885
No 37
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities. The XPG protein signatures (PDOC00658 from PROSITEDOC) are never found outside the '53EXO' domains. The latter are found in more diverse proteins [, , ]. The number of amino acids that separate the two 53EXO domains, and the presence of accompanying motifs allow the diagnosis of several protein families. In the eubacterial type A DNA-polymerases, the N-terminal and internal domains are separated by a few amino acids, usually four. The pattern DNA_POLYMERASE_A (IPR001098 from INTERPRO) is always present towards the C terminus. Several eukaryotic structure-dependent endonucleases and exonucleases have the 53EXO domains separated by 24 to 27 amino acids, and the XPG protein signatures are always present. In several proteins from herpesviridae, the two 53EXO domains are separated by 50 to 120 amino acids. These proteins are implicated in the inhibition of the expression of the host genes. Eukaryotic DNA repair proteins with 600 to 700 amino acids between the 53_EXO domains all carry the XPG protein signatures. This entry represents the N-terminal resolvase-like domain, which has a 3-layer alpha/beta/alpha core structure and contains an alpha-helical arch [, ].; GO: 0003677 DNA binding, 0008409 5'-3' exonuclease activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B 3H7I_A 3H8J_A 3H8S_A ....
Probab=36.15 E-value=42 Score=25.78 Aligned_cols=17 Identities=29% Similarity=0.601 Sum_probs=13.4
Q ss_pred HHcCCeEEEeecCcccc
Q 029289 149 IHSGLRIWMFSGDTDAV 165 (196)
Q Consensus 149 L~~girvLiYsGd~D~i 165 (196)
-+.|.+|+|+|||.|+.
T Consensus 122 ~~~~~~v~IvS~DkD~~ 138 (169)
T PF02739_consen 122 SEEGFEVIIVSGDKDLL 138 (169)
T ss_dssp HHTTCEEEEE-SSGGGG
T ss_pred ccCCCEEEEEcCCCCHH
Confidence 35689999999999984
No 38
>PRK10566 esterase; Provisional
Probab=35.95 E-value=36 Score=26.87 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=26.2
Q ss_pred CCeEEEeecCcccccchhhHHHHHHHcCCC
Q 029289 152 GLRIWMFSGDTDAVIPVTSARYSIDALNLP 181 (196)
Q Consensus 152 girvLiYsGd~D~icn~~Gt~~~i~~L~w~ 181 (196)
..++|+.+|..|.++|...+++..+.|.=.
T Consensus 186 ~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~ 215 (249)
T PRK10566 186 DRPLLLWHGLADDVVPAAESLRLQQALRER 215 (249)
T ss_pred CCCEEEEEcCCCCcCCHHHHHHHHHHHHhc
Confidence 469999999999999999999988888543
No 39
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=34.23 E-value=64 Score=24.42 Aligned_cols=29 Identities=14% Similarity=0.280 Sum_probs=24.2
Q ss_pred HcCCeEEEeecCcccccchhhHHHHHHHc
Q 029289 150 HSGLRIWMFSGDTDAVIPVTSARYSIDAL 178 (196)
Q Consensus 150 ~~girvLiYsGd~D~icn~~Gt~~~i~~L 178 (196)
+-.+++|+.+|..|.++|....+...+.+
T Consensus 173 ~i~~p~l~i~~~~D~~~p~~~~~~~~~~~ 201 (230)
T PF00561_consen 173 NIKVPTLIIWGEDDPLVPPESSEQLAKLI 201 (230)
T ss_dssp TTTSEEEEEEETTCSSSHHHHHHHHHHHS
T ss_pred ccCCCeEEEEeCCCCCCCHHHHHHHHHhc
Confidence 34699999999999999999888855544
No 40
>PF05068 MtlR: Mannitol repressor; InterPro: IPR007761 The mannitol operon of Escherichia coli, encoding the mannitol-specific enzyme II of the phosphotransferase system (MtlA) and mannitol phosphate dehydrogenase (MtlD) contains an additional downstream open reading frame which encodes the mannitol repressor (MtlR).; PDB: 3C8G_C 3BRJ_D.
Probab=33.61 E-value=45 Score=25.90 Aligned_cols=28 Identities=21% Similarity=0.501 Sum_probs=20.1
Q ss_pred ccccchhHHHHHHHhcCCCHHHHHHHhc
Q 029289 10 DYHDYLGLFQFWWSAGLISDDTYKQLKL 37 (196)
Q Consensus 10 p~~q~~~~~~~a~~~glI~~~~~~~~~~ 37 (196)
|-.....-...+|+.|+|++..|+++..
T Consensus 62 PL~~~svRlKL~y~LG~Is~~~y~Die~ 89 (170)
T PF05068_consen 62 PLGTFSVRLKLLYALGLISKEEYEDIEL 89 (170)
T ss_dssp TTSSHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred CchhHHHHHHHHHHcCCCCHHHHhhHHH
Confidence 4445556688899999999999988654
No 41
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=33.43 E-value=40 Score=25.76 Aligned_cols=26 Identities=19% Similarity=0.461 Sum_probs=21.9
Q ss_pred cchHHHHHHHHHcCCeEEEeecCccc
Q 029289 139 RIVLDIYHELIHSGLRIWMFSGDTDA 164 (196)
Q Consensus 139 ~s~~~~~~~LL~~girvLiYsGd~D~ 164 (196)
..+...++.|-+.|+++.|.+||...
T Consensus 130 ~~~~~~l~~L~~~Gi~~~i~TGD~~~ 155 (215)
T PF00702_consen 130 PGAKEALQELKEAGIKVAILTGDNES 155 (215)
T ss_dssp TTHHHHHHHHHHTTEEEEEEESSEHH
T ss_pred hhhhhhhhhhhccCcceeeeeccccc
Confidence 46778889998999999999999643
No 42
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=32.50 E-value=72 Score=28.89 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=27.9
Q ss_pred HHHHHH-cCCeEEEeecCcccccchhhHHHHHHHcC
Q 029289 145 YHELIH-SGLRIWMFSGDTDAVIPVTSARYSIDALN 179 (196)
Q Consensus 145 ~~~LL~-~girvLiYsGd~D~icn~~Gt~~~i~~L~ 179 (196)
+..++. -..++||..|+.|.++|....+...+.+.
T Consensus 410 l~~l~~~I~vPtLII~Ge~D~ivP~~~~~~la~~iP 445 (481)
T PLN03087 410 LDHVRDQLKCDVAIFHGGDDELIPVECSYAVKAKVP 445 (481)
T ss_pred HHHHHHhCCCCEEEEEECCCCCCCHHHHHHHHHhCC
Confidence 444553 36899999999999999999888777764
No 43
>PLN02442 S-formylglutathione hydrolase
Probab=32.28 E-value=47 Score=27.43 Aligned_cols=29 Identities=14% Similarity=0.115 Sum_probs=22.2
Q ss_pred HcCCeEEEeecCcccccchh-hHHHHHHHc
Q 029289 150 HSGLRIWMFSGDTDAVIPVT-SARYSIDAL 178 (196)
Q Consensus 150 ~~girvLiYsGd~D~icn~~-Gt~~~i~~L 178 (196)
..+.++||.+|+.|.+|+.. .++.+.+.+
T Consensus 215 ~~~~pvli~~G~~D~~v~~~~~s~~~~~~l 244 (283)
T PLN02442 215 DVSATILIDQGEADKFLKEQLLPENFEEAC 244 (283)
T ss_pred ccCCCEEEEECCCCccccccccHHHHHHHH
Confidence 34689999999999999974 456665554
No 44
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=31.52 E-value=99 Score=22.82 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=22.7
Q ss_pred HcCCeEEEeecCcccccchhhHHHHHHHc
Q 029289 150 HSGLRIWMFSGDTDAVIPVTSARYSIDAL 178 (196)
Q Consensus 150 ~~girvLiYsGd~D~icn~~Gt~~~i~~L 178 (196)
.-+.+|++..|+.|.+++..-.+.+.+.+
T Consensus 174 ~~~~pvl~i~g~~D~~~~~~~~~~~~~~~ 202 (228)
T PF12697_consen 174 RIKVPVLVIHGEDDPIVPPESAEELADKL 202 (228)
T ss_dssp GSSSEEEEEEETTSSSSHHHHHHHHHHHS
T ss_pred ccCCCeEEeecCCCCCCCHHHHHHHHHHC
Confidence 34799999999999999965566665555
No 45
>PF09664 DUF2399: Protein of unknown function C-terminus (DUF2399); InterPro: IPR024465 This domain is found in archaeal, bacterial and eukaryotic proteins. Its function is unknown.
Probab=31.11 E-value=59 Score=24.62 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=17.9
Q ss_pred chHHHHHHHHHcCCeEEEeecCccc
Q 029289 140 IVLDIYHELIHSGLRIWMFSGDTDA 164 (196)
Q Consensus 140 s~~~~~~~LL~~girvLiYsGd~D~ 164 (196)
....+++.|.+.|. .+-|+||.|.
T Consensus 54 A~~~LL~~L~~~g~-~l~y~GDfDp 77 (152)
T PF09664_consen 54 AARRLLDRLAAAGA-RLYYSGDFDP 77 (152)
T ss_pred HHHHHHHHHHhCCC-EEEEecCCCH
Confidence 44466777777776 6779999996
No 46
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=30.54 E-value=71 Score=24.14 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=23.7
Q ss_pred cCCeEEEeecCcccccchhhHHHHHHHcC
Q 029289 151 SGLRIWMFSGDTDAVIPVTSARYSIDALN 179 (196)
Q Consensus 151 ~girvLiYsGd~D~icn~~Gt~~~i~~L~ 179 (196)
-..+|||..|..|.+++....+.+.+.+.
T Consensus 187 i~~Pvlii~g~~D~~~~~~~~~~~~~~~~ 215 (245)
T TIGR01738 187 ISVPFLRLYGYLDGLVPAKVVPYLDKLAP 215 (245)
T ss_pred CCCCEEEEeecCCcccCHHHHHHHHHhCC
Confidence 35899999999999999888777666553
No 47
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=29.66 E-value=58 Score=27.59 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=25.4
Q ss_pred CCeEEEeecCcccccchhhHHHHHHHcC
Q 029289 152 GLRIWMFSGDTDAVIPVTSARYSIDALN 179 (196)
Q Consensus 152 girvLiYsGd~D~icn~~Gt~~~i~~L~ 179 (196)
..+||+..|+.|.++|....+.+.+.+.
T Consensus 286 ~~Pvliv~G~~D~i~~~~~~~~~~~~~~ 313 (350)
T TIGR01836 286 KMPILNIYAERDHLVPPDASKALNDLVS 313 (350)
T ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHcC
Confidence 5799999999999999999998888774
No 48
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=28.79 E-value=62 Score=25.50 Aligned_cols=27 Identities=11% Similarity=0.420 Sum_probs=23.5
Q ss_pred CCeEEEeecCcccccchhhHHHHHHHc
Q 029289 152 GLRIWMFSGDTDAVIPVTSARYSIDAL 178 (196)
Q Consensus 152 girvLiYsGd~D~icn~~Gt~~~i~~L 178 (196)
.+++||..|+.|.++|....+.+.+.+
T Consensus 220 ~~P~lii~g~~D~~vp~~~~~~~~~~~ 246 (278)
T TIGR03056 220 TIPLHLIAGEEDKAVPPDESKRAATRV 246 (278)
T ss_pred CCCEEEEEeCCCcccCHHHHHHHHHhc
Confidence 589999999999999988888877665
No 49
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=28.61 E-value=59 Score=27.46 Aligned_cols=28 Identities=14% Similarity=0.394 Sum_probs=25.0
Q ss_pred CCeEEEeecCcccccchhhHHHHHHHcC
Q 029289 152 GLRIWMFSGDTDAVIPVTSARYSIDALN 179 (196)
Q Consensus 152 girvLiYsGd~D~icn~~Gt~~~i~~L~ 179 (196)
.+++||..|..|.+||....+...+.+.
T Consensus 279 ~~P~Lii~G~~D~vv~~~~~~~l~~~~~ 306 (349)
T PLN02385 279 SLPLLILHGEADKVTDPSVSKFLYEKAS 306 (349)
T ss_pred CCCEEEEEeCCCCccChHHHHHHHHHcC
Confidence 5899999999999999988888877774
No 50
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=27.54 E-value=1e+02 Score=25.42 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=24.7
Q ss_pred CCeEEEeecCcccccchhhHHHHHHHcC
Q 029289 152 GLRIWMFSGDTDAVIPVTSARYSIDALN 179 (196)
Q Consensus 152 girvLiYsGd~D~icn~~Gt~~~i~~L~ 179 (196)
.+++||..|+.|.+||....+.+.+.+.
T Consensus 248 ~~P~lii~g~~D~~~p~~~~~~~~~~~~ 275 (306)
T TIGR01249 248 NIPTYIVHGRYDLCCPLQSAWALHKAFP 275 (306)
T ss_pred CCCeEEEecCCCCCCCHHHHHHHHHhCC
Confidence 4899999999999999988888877764
No 51
>PRK10349 carboxylesterase BioH; Provisional
Probab=27.37 E-value=89 Score=24.66 Aligned_cols=29 Identities=10% Similarity=0.119 Sum_probs=22.7
Q ss_pred HcCCeEEEeecCcccccchhhHHHHHHHc
Q 029289 150 HSGLRIWMFSGDTDAVIPVTSARYSIDAL 178 (196)
Q Consensus 150 ~~girvLiYsGd~D~icn~~Gt~~~i~~L 178 (196)
+-.++|||..|..|.++|....+...+.+
T Consensus 194 ~i~~P~lii~G~~D~~~~~~~~~~~~~~i 222 (256)
T PRK10349 194 NVSMPFLRLYGYLDGLVPRKVVPMLDKLW 222 (256)
T ss_pred hcCCCeEEEecCCCccCCHHHHHHHHHhC
Confidence 34689999999999999987766554444
No 52
>PRK07581 hypothetical protein; Validated
Probab=27.12 E-value=89 Score=26.13 Aligned_cols=27 Identities=11% Similarity=0.181 Sum_probs=23.9
Q ss_pred CCeEEEeecCcccccchhhHHHHHHHc
Q 029289 152 GLRIWMFSGDTDAVIPVTSARYSIDAL 178 (196)
Q Consensus 152 girvLiYsGd~D~icn~~Gt~~~i~~L 178 (196)
.+++|+..|+.|.++|....+.+.+.+
T Consensus 275 ~~PtLvI~G~~D~~~p~~~~~~l~~~i 301 (339)
T PRK07581 275 TAKTFVMPISTDLYFPPEDCEAEAALI 301 (339)
T ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHhC
Confidence 589999999999999998888877766
No 53
>TIGR02679 conserved hypothetical protein TIGR02679. Members of this protein belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria).
Probab=27.05 E-value=65 Score=28.37 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=18.6
Q ss_pred chHHHHHHHHHcCCeEEEeecCccc
Q 029289 140 IVLDIYHELIHSGLRIWMFSGDTDA 164 (196)
Q Consensus 140 s~~~~~~~LL~~girvLiYsGd~D~ 164 (196)
....++..|.+.|.++ .|+||.|.
T Consensus 286 a~~~LL~~L~~~g~~l-~YhGDfD~ 309 (385)
T TIGR02679 286 AQIKLLDLLAAAGARL-YYHGDFDW 309 (385)
T ss_pred HHHHHHHHHHhcCCeE-EEecCCCh
Confidence 3445777777888876 99999995
No 54
>PF01624 MutS_I: MutS domain I C-terminus.; InterPro: IPR007695 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the N-terminal domain of proteins in the MutS family of DNA mismatch repair proteins, as well as closely related proteins. The N-terminal domain of MutS is responsible for mismatch recognition and forms a 6-stranded mixed beta-sheet surrounded by three alpha-helices, which is similar to the structure of tRNA endonuclease. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 3THY_B 3THZ_B 3THW_B 3THX_B 2WTU_A 1OH7_A ....
Probab=26.93 E-value=77 Score=22.32 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=17.2
Q ss_pred cchHHHHHHHHHcCCeEEEeecC
Q 029289 139 RIVLDIYHELIHSGLRIWMFSGD 161 (196)
Q Consensus 139 ~s~~~~~~~LL~~girvLiYsGd 161 (196)
.....+++.|+++|+||.||.-.
T Consensus 64 ~~l~~~l~~Ll~~G~~V~i~~q~ 86 (113)
T PF01624_consen 64 SQLDKYLKKLLEAGYRVAIYEQV 86 (113)
T ss_dssp GGHHHHHHHHHHTT-EEEEEEE-
T ss_pred HHHHHHHHHHHHcCCEEEEEEec
Confidence 35567889999999999998643
No 55
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=25.44 E-value=72 Score=26.75 Aligned_cols=32 Identities=19% Similarity=0.323 Sum_probs=28.4
Q ss_pred cCCeEEEeecCcccccc-hhhHHHHHHHcCCCC
Q 029289 151 SGLRIWMFSGDTDAVIP-VTSARYSIDALNLPT 182 (196)
Q Consensus 151 ~girvLiYsGd~D~icn-~~Gt~~~i~~L~w~~ 182 (196)
..++|||.+|..|.++. ..+..++.++++-+.
T Consensus 227 ~~~PvLll~g~~D~vv~~~~~~~~~~~~~~~~~ 259 (298)
T COG2267 227 IALPVLLLQGGDDRVVDNVEGLARFFERAGSPD 259 (298)
T ss_pred ccCCEEEEecCCCccccCcHHHHHHHHhcCCCC
Confidence 36999999999999999 699999999998765
No 56
>PF03172 Sp100: Sp100 domain; InterPro: IPR004865 The Sp100 and promyelocytic leukemia proteins (PML) are constituents of nuclear domains, known as nuclear dots (NDs or NBs - nuclear bodies or PML bodies), and are both covalently modified by the small ubiquitin-related protein SUMO-1. NBs play a role in autoimmunity, virus infections, and in the etiology of acute promyelocytic leukemia []. A functional nuclear localization signal and an NB-targeting region that coincides with an Sp100 homodimerization domain have been mapped. Sequences similar to the Sp100 homodimerization/ND-targeting region occur in several other proteins, which include the autoimmune regulator proteins (AIRE) and other numerous other transiently or permanently localised proteins. PML is expressed as a family of isoforms (PML I-VII) as a result of alternative splicing, most of which are found in the nucleus. Although there are many other functions of PML NBs in a wide range of cellular pathways, there is accumulating evidence that they represent preferential targets for viral infections and that PML plays a role in the mechanism of the antiviral action of interferon []. The Sp100 domain is usually found at the amino terminus of proteins that contain a SAND domain IPR000770 from INTERPRO. ; GO: 0005634 nucleus
Probab=24.60 E-value=50 Score=23.42 Aligned_cols=24 Identities=25% Similarity=0.518 Sum_probs=19.7
Q ss_pred HHHHHH---hcCCCHHHHHHHhccCCc
Q 029289 18 FQFWWS---AGLISDDTYKQLKLLCDY 41 (196)
Q Consensus 18 ~~~a~~---~glI~~~~~~~~~~~C~~ 41 (196)
.+|+.+ |++|+++.|++.+..|..
T Consensus 25 FPfl~gLrD~~~ItE~~y~e~~e~crn 51 (103)
T PF03172_consen 25 FPFLEGLRDHSFITEQMYKESQEACRN 51 (103)
T ss_pred chHHHHhhhcccccHHHHHHHHHHHhc
Confidence 456665 899999999999999964
No 57
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=22.97 E-value=92 Score=25.03 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=24.0
Q ss_pred CCeEEEeecCcccccchhhHHHHHHHcC
Q 029289 152 GLRIWMFSGDTDAVIPVTSARYSIDALN 179 (196)
Q Consensus 152 girvLiYsGd~D~icn~~Gt~~~i~~L~ 179 (196)
.+++||..|+.|.++|....+...+.+.
T Consensus 207 ~~P~lii~G~~D~~v~~~~~~~l~~~~~ 234 (276)
T TIGR02240 207 QQPTLVLAGDDDPIIPLINMRLLAWRIP 234 (276)
T ss_pred CCCEEEEEeCCCCcCCHHHHHHHHHhCC
Confidence 5899999999999999988877776664
No 58
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=22.82 E-value=1.4e+02 Score=23.75 Aligned_cols=28 Identities=11% Similarity=0.126 Sum_probs=23.3
Q ss_pred cCCeEEEeecCcccccchhhHHHHHHHc
Q 029289 151 SGLRIWMFSGDTDAVIPVTSARYSIDAL 178 (196)
Q Consensus 151 ~girvLiYsGd~D~icn~~Gt~~~i~~L 178 (196)
-..+||+..|..|.++|..-.+.+.+.+
T Consensus 222 i~~Pvlli~G~~D~~v~~~~~~~~~~~~ 249 (282)
T TIGR03343 222 IKAKTLVTWGRDDRFVPLDHGLKLLWNM 249 (282)
T ss_pred CCCCEEEEEccCCCcCCchhHHHHHHhC
Confidence 3589999999999999987777776665
No 59
>PRK13840 sucrose phosphorylase; Provisional
Probab=22.66 E-value=94 Score=28.36 Aligned_cols=45 Identities=18% Similarity=0.058 Sum_probs=29.8
Q ss_pred chHHHHHHHHHcCCeEEEeecCcccccchhhHH--HHHHHcCCCCcccccccc
Q 029289 140 IVLDIYHELIHSGLRIWMFSGDTDAVIPVTSAR--YSIDALNLPTVKPWRAWY 190 (196)
Q Consensus 140 s~~~~~~~LL~~girvLiYsGd~D~icn~~Gt~--~~i~~L~w~~~~~~~~W~ 190 (196)
.....++.|.+ |+||++ |.++|+.+.+ ++.+.+.-...++++.|+
T Consensus 66 Gt~eDf~~L~~-giklml-----DlV~NHtS~~h~WFqd~l~~~~~s~Y~D~f 112 (495)
T PRK13840 66 GDWDDVKALGK-THDIMA-----DLIVNHMSAESPQFQDVLAKGEASEYWPMF 112 (495)
T ss_pred CCHHHHHHHHh-CCeEEE-----EECCCcCCCCcHHHHHHHHhCCCCCccCeE
Confidence 34456778875 899987 9999999854 344544433445555554
No 60
>COG4474 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.62 E-value=1.5e+02 Score=23.12 Aligned_cols=30 Identities=13% Similarity=0.217 Sum_probs=24.0
Q ss_pred hHHHHHHHHHcCCeEEEeecCcccccchhhHHHHHHH
Q 029289 141 VLDIYHELIHSGLRIWMFSGDTDAVIPVTSARYSIDA 177 (196)
Q Consensus 141 ~~~~~~~LL~~girvLiYsGd~D~icn~~Gt~~~i~~ 177 (196)
....+..||+.|++=+|.+|+ +|++.|.-.
T Consensus 31 i~~~l~~lleeGleW~litGq-------LG~E~WA~E 60 (180)
T COG4474 31 IKKKLEALLEEGLEWVLITGQ-------LGFELWAAE 60 (180)
T ss_pred HHHHHHHHHhcCceEEEEecc-------ccHHHHHHH
Confidence 335667788999999999996 599998643
No 61
>PRK03592 haloalkane dehalogenase; Provisional
Probab=22.56 E-value=82 Score=25.57 Aligned_cols=26 Identities=8% Similarity=0.158 Sum_probs=21.0
Q ss_pred CCeEEEeecCcccccchhhHHHHHHH
Q 029289 152 GLRIWMFSGDTDAVIPVTSARYSIDA 177 (196)
Q Consensus 152 girvLiYsGd~D~icn~~Gt~~~i~~ 177 (196)
.+++||..|+.|.+++......++.+
T Consensus 228 ~~P~lii~G~~D~~~~~~~~~~~~~~ 253 (295)
T PRK03592 228 DVPKLLINAEPGAILTTGAIRDWCRS 253 (295)
T ss_pred CCCeEEEeccCCcccCcHHHHHHHHH
Confidence 58999999999999966666666654
No 62
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=22.46 E-value=77 Score=27.21 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=18.6
Q ss_pred CCeEEEeecCcccccchhhHHH
Q 029289 152 GLRIWMFSGDTDAVIPVTSARY 173 (196)
Q Consensus 152 girvLiYsGd~D~icn~~Gt~~ 173 (196)
-++|+++.|+.|.++++..-..
T Consensus 258 ~iPv~fi~G~~D~v~~~p~~~~ 279 (322)
T KOG4178|consen 258 TIPVLFIWGDLDPVLPYPIFGE 279 (322)
T ss_pred ccceEEEEecCcccccchhHHH
Confidence 4899999999999999994333
No 63
>PF04214 DUF411: Protein of unknown function, DUF; InterPro: IPR007332 The function of the members of this bacterial protein family is unknown. Some members may be involved in conferring cation resistance.
Probab=22.07 E-value=97 Score=20.37 Aligned_cols=21 Identities=19% Similarity=0.435 Sum_probs=17.0
Q ss_pred CcHHHHHhcCCCCCccccccccccch
Q 029289 86 NQPEVQKALHVIPAVALAKWETCRWH 111 (196)
Q Consensus 86 N~~~Vr~aLhv~~~~~~~~w~~c~~~ 111 (196)
+...+|+.++|+. ...+|...
T Consensus 9 dl~~ik~~~gVP~-----~l~SCHTa 29 (70)
T PF04214_consen 9 DLSAIKQRLGVPP-----ELASCHTA 29 (70)
T ss_pred chHHHHHHhCCCc-----hhccccEE
Confidence 4568999999986 47889977
No 64
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=21.69 E-value=96 Score=27.31 Aligned_cols=27 Identities=11% Similarity=-0.015 Sum_probs=23.3
Q ss_pred CCeEEEeecCcccccchhhHHHHHHHc
Q 029289 152 GLRIWMFSGDTDAVIPVTSARYSIDAL 178 (196)
Q Consensus 152 girvLiYsGd~D~icn~~Gt~~~i~~L 178 (196)
.++||+.+|..|.++|....+.+.+..
T Consensus 355 ~~PvLiI~G~~D~ivP~~~a~~l~~~~ 381 (414)
T PRK05077 355 PTPMLSGYWKNDPFSPEEDSRLIASSS 381 (414)
T ss_pred CCcEEEEecCCCCCCCHHHHHHHHHhC
Confidence 479999999999999999999776554
No 65
>PRK00870 haloalkane dehalogenase; Provisional
Probab=21.52 E-value=1.2e+02 Score=24.74 Aligned_cols=32 Identities=9% Similarity=-0.064 Sum_probs=23.5
Q ss_pred HHHHHcCCeEEEeecCcccccchhhHHHHHHHc
Q 029289 146 HELIHSGLRIWMFSGDTDAVIPVTSARYSIDAL 178 (196)
Q Consensus 146 ~~LL~~girvLiYsGd~D~icn~~Gt~~~i~~L 178 (196)
+.+.+-.+++||..|..|.+++... +.+.+.+
T Consensus 233 ~~l~~i~~P~lii~G~~D~~~~~~~-~~~~~~~ 264 (302)
T PRK00870 233 AVLERWDKPFLTAFSDSDPITGGGD-AILQKRI 264 (302)
T ss_pred HhhhcCCCceEEEecCCCCcccCch-HHHHhhc
Confidence 3344457999999999999999755 5554444
Done!