Query 029290
Match_columns 196
No_of_seqs 180 out of 353
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 17:11:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029290.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029290hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bl5_A MGC83862 protein, quaki 99.9 1.5E-24 5.2E-29 174.1 1.2 53 143-195 2-54 (140)
2 1k1g_A SF1-BO isoform; splicin 99.8 5.8E-22 2E-26 156.9 3.5 56 140-195 4-59 (131)
3 2yqr_A KIAA0907 protein; struc 99.8 4.5E-19 1.5E-23 138.6 4.9 52 140-191 9-61 (119)
4 2xa6_A KH domain-containing\,R 99.2 1.8E-11 6.3E-16 79.3 5.1 38 34-74 3-40 (41)
5 3k6t_A Female germline-specifi 99.2 2E-11 7E-16 85.3 4.5 45 37-81 6-50 (60)
6 4dnn_A Protein quaking, MQKI, 99.1 2.3E-11 7.9E-16 83.7 2.0 42 38-79 4-48 (56)
7 4fxw_B Splicing factor 1; UHM, 98.7 3.8E-08 1.3E-12 77.6 6.4 72 62-136 43-121 (124)
8 1dtj_A RNA-binding neurooncolo 98.2 6.4E-07 2.2E-11 62.8 3.0 41 142-188 2-42 (76)
9 2opv_A KHSRP protein; KH domai 98.1 1.1E-06 3.9E-11 63.3 2.8 41 143-189 14-54 (85)
10 1we8_A Tudor and KH domain con 98.0 2.5E-06 8.5E-11 63.8 2.8 42 141-188 13-54 (104)
11 2dgr_A Ring finger and KH doma 98.0 1.9E-06 6.4E-11 62.7 1.5 41 142-188 9-49 (83)
12 1zzk_A Heterogeneous nuclear r 97.9 3.6E-06 1.2E-10 60.2 2.4 38 143-186 7-44 (82)
13 1ec6_A RNA-binding protein NOV 97.9 1.8E-06 6E-11 62.4 0.3 41 142-188 2-42 (87)
14 1wvn_A Poly(RC)-binding protei 97.9 3.4E-06 1.1E-10 60.3 1.4 39 142-186 5-43 (82)
15 1x4m_A FAR upstream element bi 97.9 4.4E-06 1.5E-10 61.4 2.0 43 141-189 13-55 (94)
16 2p2r_A Poly(RC)-binding protei 97.8 3E-06 1E-10 59.6 0.6 39 142-186 4-42 (76)
17 1x4n_A FAR upstream element bi 97.8 5.7E-06 2E-10 60.5 2.1 40 142-187 14-53 (92)
18 1j5k_A Heterogeneous nuclear r 97.8 4.7E-06 1.6E-10 60.6 0.7 39 142-186 13-51 (89)
19 2axy_A Poly(RC)-binding protei 97.7 6.4E-06 2.2E-10 57.9 1.0 41 142-188 4-44 (73)
20 2hh2_A KH-type splicing regula 97.7 8.4E-06 2.9E-10 61.4 1.7 39 144-188 8-46 (107)
21 2hh3_A KH-type splicing regula 97.7 8.7E-06 3E-10 61.6 1.6 38 144-187 12-49 (106)
22 1vig_A Vigilin; RNA-binding pr 97.7 9.9E-06 3.4E-10 56.7 1.7 39 144-188 6-44 (71)
23 2cte_A Vigilin; K homology typ 97.7 8.6E-06 2.9E-10 59.9 0.9 39 143-187 17-55 (94)
24 2ctl_A Vigilin; K homology typ 97.7 1.3E-05 4.6E-10 59.4 1.8 40 144-189 18-57 (97)
25 2ctk_A Vigilin; K homology typ 97.7 1.1E-05 3.7E-10 60.7 1.2 43 141-189 15-57 (104)
26 2ctm_A Vigilin; K homology typ 97.4 6E-05 2E-09 55.8 2.1 40 144-189 18-57 (95)
27 3krm_A Insulin-like growth fac 97.1 0.00012 4.1E-09 57.3 1.3 43 141-189 83-125 (163)
28 1j4w_A FUSE binding protein; s 97.0 0.0002 6.7E-09 56.9 1.5 40 143-188 104-143 (174)
29 2jvz_A KH type-splicing, FAR u 97.0 0.00015 5.1E-09 56.4 0.6 37 145-187 93-129 (164)
30 2anr_A Neuro-oncological ventr 96.9 0.00017 5.8E-09 57.3 0.2 40 143-188 104-143 (178)
31 2jzx_A Poly(RC)-binding protei 96.8 0.00015 5.3E-09 56.5 -0.6 38 143-186 89-126 (160)
32 2e3u_A PH-DIM2P, hypothetical 96.7 0.00039 1.3E-08 58.7 0.8 29 159-187 139-167 (219)
33 1tua_A Hypothetical protein AP 96.6 0.00038 1.3E-08 57.9 0.5 30 158-187 107-136 (191)
34 2ctj_A Vigilin; K homology typ 96.6 0.0005 1.7E-08 51.0 0.9 41 144-190 18-59 (95)
35 2cpq_A FragIle X mental retard 95.8 0.0017 5.8E-08 48.3 0.4 37 143-185 15-52 (91)
36 3u1k_A Polyribonucleotide nucl 94.8 0.0077 2.6E-07 57.9 1.4 43 141-189 565-607 (630)
37 2e3u_A PH-DIM2P, hypothetical 94.4 0.0083 2.8E-07 50.6 0.3 36 144-185 35-70 (219)
38 2qnd_A FMR1 protein; KH domain 93.4 0.038 1.3E-06 43.1 2.4 39 145-189 69-108 (144)
39 3v69_A Protein filia; RNA-bind 92.7 0.033 1.1E-06 44.6 1.2 49 126-186 45-93 (140)
40 2qnd_A FMR1 protein; KH domain 92.0 0.036 1.2E-06 43.3 0.6 32 144-181 5-36 (144)
41 2ctf_A Vigilin; K homology typ 92.0 0.078 2.7E-06 39.4 2.4 36 143-184 27-63 (102)
42 4aid_A Polyribonucleotide nucl 92.0 0.032 1.1E-06 54.5 0.3 41 144-190 571-611 (726)
43 3n89_A Defective in GERM LINE 90.2 0.1 3.4E-06 47.5 1.7 39 142-186 29-69 (376)
44 3cdi_A Polynucleotide phosphor 77.5 0.46 1.6E-05 46.3 0.0 42 144-191 561-602 (723)
45 1e3p_A Guanosine pentaphosphat 74.7 0.28 9.5E-06 48.1 -2.4 41 145-191 600-640 (757)
46 2cxc_A NUSA; transcription ter 58.6 3.2 0.00011 32.8 1.1 27 159-185 46-72 (144)
47 3isp_A HTH-type transcriptiona 39.1 14 0.00046 29.4 2.0 19 170-188 40-58 (303)
48 3vmx_A Voltage-gated hydrogen 36.1 29 0.00099 22.8 2.8 25 58-82 23-47 (48)
49 3hhg_A Transcriptional regulat 31.5 18 0.00062 28.4 1.6 21 170-190 37-57 (306)
50 3fzv_A Probable transcriptiona 30.5 13 0.00046 29.2 0.6 16 170-185 38-53 (306)
51 3szp_A Transcriptional regulat 30.4 17 0.00058 28.1 1.2 21 169-189 34-54 (291)
52 3n89_A Defective in GERM LINE 29.2 13 0.00045 33.6 0.4 41 144-190 187-229 (376)
53 1k0r_A NUSA; two component arr 29.1 15 0.00051 33.2 0.7 39 146-185 238-277 (366)
54 2pt7_G HP1451, hypothetical pr 27.6 11 0.00039 29.8 -0.3 19 160-178 44-62 (152)
55 1ixc_A CBNR, LYSR-type regulat 26.5 21 0.0007 27.9 1.0 22 169-190 34-55 (294)
56 2z0s_A Probable exosome comple 26.2 22 0.00076 29.4 1.2 28 158-185 157-184 (235)
57 2esn_A Probable transcriptiona 25.2 35 0.0012 27.0 2.2 19 170-188 44-62 (310)
58 3fxq_A LYSR type regulator of 24.2 33 0.0011 27.2 1.9 22 169-190 35-56 (305)
59 2asb_A Transcription elongatio 23.9 20 0.00067 30.8 0.5 39 146-185 115-154 (251)
60 3a2a_A Voltage-gated hydrogen 22.9 55 0.0019 22.2 2.4 26 58-83 30-55 (58)
61 2ba0_A Archeal exosome RNA bin 22.4 22 0.00075 29.5 0.5 27 158-184 145-171 (229)
62 3iev_A GTP-binding protein ERA 21.1 28 0.00096 29.2 0.9 41 140-185 237-285 (308)
63 3bbp_D GRIP and coiled-coil do 20.8 66 0.0022 22.7 2.6 34 38-74 31-64 (71)
No 1
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=99.89 E-value=1.5e-24 Score=174.09 Aligned_cols=53 Identities=47% Similarity=1.037 Sum_probs=50.6
Q ss_pred eEEEEecCCCCCCCCceeeeeecCCchhHHHHHHHhCCeEEEecccCCCCCCC
Q 029290 143 RTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAR 195 (196)
Q Consensus 143 ~~~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eTgckI~IrGkGS~kd~~K 195 (196)
+++|||||+++||+|||||+||||+|+|+|+||++|||||.|||+||+||..|
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~ 54 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKK 54 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHH
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccc
Confidence 58899999999999999999999999999999999999999999999998654
No 2
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.84 E-value=5.8e-22 Score=156.88 Aligned_cols=56 Identities=43% Similarity=0.854 Sum_probs=52.8
Q ss_pred ceeeEEEEecCCCCCCCCceeeeeecCCchhHHHHHHHhCCeEEEecccCCCCCCC
Q 029290 140 IVKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAR 195 (196)
Q Consensus 140 ~vk~~~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eTgckI~IrGkGS~kd~~K 195 (196)
..|+++||+||+++||+|||||+||||+|+|+|+||++|||+|.|||+||++|..+
T Consensus 4 ~~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~ 59 (131)
T 1k1g_A 4 ATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKV 59 (131)
T ss_dssp -CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSS
T ss_pred CceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccc
Confidence 36889999999999999999999999999999999999999999999999998654
No 3
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4.5e-19 Score=138.60 Aligned_cols=52 Identities=25% Similarity=0.420 Sum_probs=49.3
Q ss_pred ceeeEEEEecCCC-CCCCCceeeeeecCCchhHHHHHHHhCCeEEEecccCCC
Q 029290 140 IVKRTIRVDIPVE-KYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIK 191 (196)
Q Consensus 140 ~vk~~~kv~IPv~-~~P~~NfvG~ilGPrG~tlK~le~eTgckI~IrGkGS~k 191 (196)
...+++|||||++ .||+|||+|+||||+|+|+|+||++|||+|.|||+||++
T Consensus 9 ~~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~ 61 (119)
T 2yqr_A 9 MHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGC 61 (119)
T ss_dssp CSCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTC
T ss_pred eeEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccc
Confidence 4568999999999 599999999999999999999999999999999999986
No 4
>2xa6_A KH domain-containing\,RNA-binding\,signal transduction-associated protein 1; transcription, STAR proteins, CD44, cell cycle; NMR {Homo sapiens}
Probab=99.20 E-value=1.8e-11 Score=79.31 Aligned_cols=38 Identities=37% Similarity=0.653 Sum_probs=33.8
Q ss_pred chhHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHH
Q 029290 34 ILDQEKYLSELLAERHKLNPFLPVLPNAYRLLNQEIMRVTT 74 (196)
Q Consensus 34 ~~~~~~YL~ELl~Ek~kL~pf~~vlph~~rLLnqEI~RV~~ 74 (196)
++..++||.||++||.+|+|. |.||.|||++||+|+..
T Consensus 3 m~~~~kyLpeL~aEk~sLdPs---f~Ha~RLl~~EIek~qk 40 (41)
T 2xa6_A 3 MEPENKYLPELMAEKDSLDPS---FTHAMQLLTAEIEKIQK 40 (41)
T ss_dssp --CHHHHHHHHHHHHHHSCTT---CHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHhhhhccCch---HHHHHHHHHHHHHHHHc
Confidence 556789999999999999995 99999999999999974
No 5
>3k6t_A Female germline-specific tumor suppressor GLD-1; QUA1 homodimerization domain, helix-turn-helix motif, hydrophobic homodimer interface; 2.04A {Caenorhabditis elegans} PDB: 3kbl_A
Probab=99.17 E-value=2e-11 Score=85.26 Aligned_cols=45 Identities=33% Similarity=0.488 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhhcCCcc
Q 029290 37 QEKYLSELLAERHKLNPFLPVLPNAYRLLNQEIMRVTTLLGNASV 81 (196)
Q Consensus 37 ~~~YL~ELl~Ek~kL~pf~~vlph~~rLLnqEI~RV~~~l~~~~~ 81 (196)
..+||++||+||..|..|+++|.|+.|||++||.||+..|++..+
T Consensus 6 ~~eYL~qLlkdKk~l~~~p~~f~HlerLLdeEI~RVR~~Lf~~~~ 50 (60)
T 3k6t_A 6 TVEYLADLVKEKKHLTLFPHMFSNVERLLDDEIGRVRVALFQTEF 50 (60)
T ss_dssp CHHHHHHHHHHHHHHTTSTTTCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 369999999999999999999999999999999999999998766
No 6
>4dnn_A Protein quaking, MQKI, QKI; helix-turn-helix, hydrophobic homodimer interface, perpendic stacking of protomers, developmental protein, RNA-binding; HET: MSE; 2.10A {Mus musculus}
Probab=99.09 E-value=2.3e-11 Score=83.68 Aligned_cols=42 Identities=26% Similarity=0.445 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhhcCCCCC---ChhhHHHHHHHHHHHHHHhhcCC
Q 029290 38 EKYLSELLAERHKLNPFLP---VLPNAYRLLNQEIMRVTTLLGNA 79 (196)
Q Consensus 38 ~~YL~ELl~Ek~kL~pf~~---vlph~~rLLnqEI~RV~~~l~~~ 79 (196)
.+||++||+||..|..|++ +|.|+.|||++||.||+..|++.
T Consensus 4 ~eYL~qLlkdkk~l~~~Pn~~~iF~H~eRLldEEI~rVR~~Lfq~ 48 (56)
T 4dnn_A 4 PDYLMQLMNDKKLMSSLPNFSGIFNHLERLLDEEISRVRKDMYND 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHTTCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5899999999999999987 99999999999999999998864
No 7
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A
Probab=98.65 E-value=3.8e-08 Score=77.56 Aligned_cols=72 Identities=15% Similarity=0.124 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHhhcCCccC-C-CCCCCCCCC---CCCCCCcCCCCCCccchhhhhhHHhhhhhhcccc--CCCCCCCC
Q 029290 62 YRLLNQEIMRVTTLLGNASVL-G-QSGLEHASP---LTSGGIFSNGGADTNGLASRFQSEISGLMQSSSA--QNWLSSQG 134 (196)
Q Consensus 62 ~rLLnqEI~RV~~~l~~~~~~-~-~d~~~~~SP---~~s~g~~~N~~~~~~~~~~~~~~Er~~li~~~~~--~~~~~pp~ 134 (196)
..++...|+.|+.+|..+.+. . .++.|++|| +++.|.++||++ -+++++|++|||+||+.++. ++|. ||.
T Consensus 43 ay~~~~RieeIt~kL~~g~l~i~~~~~~RSPSPpP~Yd~~G~R~NTRE--~R~r~~LE~ER~~lIe~~~k~~P~fk-pP~ 119 (124)
T 4fxw_B 43 AYIVQLQIEDLTRKLRTGDLGIPPNPEDRSPSPEPIYNSEGKRLNTRE--FRTRKKLEEERHNLITEMVALNPDFK-PPA 119 (124)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCCSSTTSSCCCCCCCBCTTSCBSSCHH--HHHHHHHHHHHHHHHHHGGGTCSSCC-CCC
T ss_pred HHHHHhhHHHHHHHHhcCCcCCCCCcccCCCCCCCccCccccccchHH--HHHHHHHHHHHHHHHHHHHHHCcCCC-CCC
Confidence 355667899999999998873 3 456889998 478899999985 34779999999999999875 5555 444
Q ss_pred CC
Q 029290 135 SS 136 (196)
Q Consensus 135 ~~ 136 (196)
||
T Consensus 120 DY 121 (124)
T 4fxw_B 120 DY 121 (124)
T ss_dssp C-
T ss_pred CC
Confidence 55
No 8
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=98.21 E-value=6.4e-07 Score=62.80 Aligned_cols=41 Identities=32% Similarity=0.597 Sum_probs=36.5
Q ss_pred eeEEEEecCCCCCCCCceeeeeecCCchhHHHHHHHhCCeEEEeccc
Q 029290 142 KRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRG 188 (196)
Q Consensus 142 k~~~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eTgckI~IrGkG 188 (196)
|.+.++.||. +++|+|||++|.|+|+|+++|||+|.|...+
T Consensus 2 ~~~~~i~Ip~------~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~ 42 (76)
T 1dtj_A 2 KELVEMAVPE------NLVGAILGKGGKTLVEYQELTGARIQISKKG 42 (76)
T ss_dssp CEEEEEEEET------TTHHHHHCSTTHHHHHHHHHHCCEEEECCTT
T ss_pred ceEEEEEECh------HHcceEECCCchHHHHHHHHhCCEEEECcCC
Confidence 4567889997 6899999999999999999999999998753
No 9
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=98.12 E-value=1.1e-06 Score=63.28 Aligned_cols=41 Identities=20% Similarity=0.455 Sum_probs=36.7
Q ss_pred eEEEEecCCCCCCCCceeeeeecCCchhHHHHHHHhCCeEEEecccC
Q 029290 143 RTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGS 189 (196)
Q Consensus 143 ~~~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eTgckI~IrGkGS 189 (196)
....|.||. +++|+|||++|.|+|+|+++|||+|.|...|+
T Consensus 14 ~~~~i~Ip~------~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~ 54 (85)
T 2opv_A 14 TVQEIMIPA------GKAGLVIGKGGETIKQLQERAGVKMILIQDGS 54 (85)
T ss_dssp EEEEEEECT------TTHHHHHTTTTHHHHHHHHHHTCEEEECSSSC
T ss_pred EEEEEEeCh------hheeeeECCCCHHHHHHHHHHCCEEEEcCCCC
Confidence 356788986 68999999999999999999999999988776
No 10
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.00 E-value=2.5e-06 Score=63.81 Aligned_cols=42 Identities=14% Similarity=0.375 Sum_probs=36.8
Q ss_pred eeeEEEEecCCCCCCCCceeeeeecCCchhHHHHHHHhCCeEEEeccc
Q 029290 141 VKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRG 188 (196)
Q Consensus 141 vk~~~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eTgckI~IrGkG 188 (196)
...+.+|.||. +++|+|||++|.|+|+|+++|||+|.|-...
T Consensus 13 ap~~~~i~Ip~------~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~ 54 (104)
T 1we8_A 13 TPVFEQLSVPQ------RSVGRIIGRGGETIRSICKASGAKITCDKES 54 (104)
T ss_dssp CEEEEEEEEET------TTHHHHHTTTSHHHHHHHHHHCCEEEECCSS
T ss_pred CCEEEEEEECh------hheeeeECCCCHHHHHHHHHHCCEEEEecCC
Confidence 44577899996 6899999999999999999999999997643
No 11
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.97 E-value=1.9e-06 Score=62.74 Aligned_cols=41 Identities=34% Similarity=0.724 Sum_probs=35.3
Q ss_pred eeEEEEecCCCCCCCCceeeeeecCCchhHHHHHHHhCCeEEEeccc
Q 029290 142 KRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRG 188 (196)
Q Consensus 142 k~~~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eTgckI~IrGkG 188 (196)
+.+..|.||. +++|.|||++|.|+|+||++|||+|.|-.++
T Consensus 9 ~~~~~i~VP~------~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~ 49 (83)
T 2dgr_A 9 QTTIQVRVPY------RVVGLVVGPKGATIKRIQQRTHTYIVTPGRD 49 (83)
T ss_dssp SEEEEEECCH------HHHHHHHTTTTSSHHHHHHHTTCEEECCCSS
T ss_pred ceEEEEEeCh------HHeeeeECCCchHHHHHHHHhCCeEEecCCC
Confidence 4466788874 8999999999999999999999999997543
No 12
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=97.93 E-value=3.6e-06 Score=60.20 Aligned_cols=38 Identities=24% Similarity=0.510 Sum_probs=34.3
Q ss_pred eEEEEecCCCCCCCCceeeeeecCCchhHHHHHHHhCCeEEEec
Q 029290 143 RTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRG 186 (196)
Q Consensus 143 ~~~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eTgckI~IrG 186 (196)
.+.++.||. +++|.|||+.|.++|+|+++|||+|.|..
T Consensus 7 ~~~~i~Vp~------~~vg~iIGkgG~~Ik~I~~~tga~I~i~~ 44 (82)
T 1zzk_A 7 ITTQVTIPK------DLAGSIIGKGGQRIKQIRHESGASIKIDE 44 (82)
T ss_dssp EEEEEEEET------TTGGGGTCGGGHHHHHHHHHHCCEEEECC
T ss_pred EEEEEEECh------HhcCeeECCCchHHHHHHHHHCCEEEEcC
Confidence 466889997 58999999999999999999999999975
No 13
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=97.90 E-value=1.8e-06 Score=62.42 Aligned_cols=41 Identities=32% Similarity=0.609 Sum_probs=36.1
Q ss_pred eeEEEEecCCCCCCCCceeeeeecCCchhHHHHHHHhCCeEEEeccc
Q 029290 142 KRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRG 188 (196)
Q Consensus 142 k~~~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eTgckI~IrGkG 188 (196)
|.+.++.||. +++|+|||++|.|+|+|+++|||+|.|-..+
T Consensus 2 k~t~~i~IP~------~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~ 42 (87)
T 1ec6_A 2 KELVEIAVPE------NLVGAILGKGGKTLVEYQELTGARIQISKKG 42 (87)
T ss_dssp CSEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECCTT
T ss_pred ceEEEEEECh------HHcCeeECCCcHhHHHHHHHhCCEEEEccCC
Confidence 4466888986 6899999999999999999999999998653
No 14
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=97.88 E-value=3.4e-06 Score=60.28 Aligned_cols=39 Identities=21% Similarity=0.513 Sum_probs=35.0
Q ss_pred eeEEEEecCCCCCCCCceeeeeecCCchhHHHHHHHhCCeEEEec
Q 029290 142 KRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRG 186 (196)
Q Consensus 142 k~~~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eTgckI~IrG 186 (196)
+.+.++.||. +++|.|||++|.++|+|+++|||+|.|-.
T Consensus 5 ~~~~~i~Ip~------~~vg~IIGkgG~~Ik~I~~~sga~I~i~~ 43 (82)
T 1wvn_A 5 QTTHELTIPN------NLIGCIIGRQGANINEIRQMSGAQIKIAN 43 (82)
T ss_dssp CEEEEEEEEG------GGHHHHHCGGGHHHHHHHHHHCCEEEECC
T ss_pred cEEEEEEEch------HhccceeCCCchhHHHHHHHhCCEEEEec
Confidence 3467889996 68999999999999999999999999975
No 15
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=97.86 E-value=4.4e-06 Score=61.37 Aligned_cols=43 Identities=16% Similarity=0.392 Sum_probs=37.8
Q ss_pred eeeEEEEecCCCCCCCCceeeeeecCCchhHHHHHHHhCCeEEEecccC
Q 029290 141 VKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGS 189 (196)
Q Consensus 141 vk~~~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eTgckI~IrGkGS 189 (196)
...+.+|.||. +++|+|||+.|.|+|+|+++|||+|.|-..+.
T Consensus 13 ~~~~~~i~Ip~------~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~ 55 (94)
T 1x4m_A 13 GNAVQEIMIPA------SKAGLVIGKGGETIKQLQERAGVKMVMIQDGP 55 (94)
T ss_dssp CCEEEEEEECH------HHHHHHSCSSSSHHHHHHHHHTSEEEECCSCC
T ss_pred CcEEEEEEECh------hhcceEECCCCHHHHHHHHHHCCeEEecCCCC
Confidence 34577899996 68999999999999999999999999987664
No 16
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=97.83 E-value=3e-06 Score=59.64 Aligned_cols=39 Identities=15% Similarity=0.472 Sum_probs=34.9
Q ss_pred eeEEEEecCCCCCCCCceeeeeecCCchhHHHHHHHhCCeEEEec
Q 029290 142 KRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRG 186 (196)
Q Consensus 142 k~~~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eTgckI~IrG 186 (196)
+.+.++.||. +++|.|||++|.++|+|+++|||+|.|..
T Consensus 4 ~~~~~i~Ip~------~~vg~iIGkgG~~Ik~I~~~tga~I~i~~ 42 (76)
T 2p2r_A 4 TTSHELTIPN------DLIGCIIGRQGAKINEIRQMSGAQIKIAN 42 (76)
T ss_dssp CEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECC
T ss_pred ceEEEEEECh------HHcceEECCCChHHHHHHHHHCCEEEEcC
Confidence 3466888986 68999999999999999999999999975
No 17
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=97.83 E-value=5.7e-06 Score=60.54 Aligned_cols=40 Identities=23% Similarity=0.510 Sum_probs=36.0
Q ss_pred eeEEEEecCCCCCCCCceeeeeecCCchhHHHHHHHhCCeEEEecc
Q 029290 142 KRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGR 187 (196)
Q Consensus 142 k~~~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eTgckI~IrGk 187 (196)
..+.+|.||. +++|+|||+.|.|+|+|+++|||+|.|...
T Consensus 14 ~~~~~i~Ip~------~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~ 53 (92)
T 1x4n_A 14 VMTEEYKVPD------GMVGFIIGRGGEQISRIQQESGCKIQIAPD 53 (92)
T ss_dssp CEEEEEEEEH------HHHHHHHCSSSHHHHHHHHHSCCEEEECSC
T ss_pred CEEEEEEECh------HHcceeECCCchHHHHHHHHhCCEEEEcCC
Confidence 4567889996 699999999999999999999999999875
No 18
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=97.77 E-value=4.7e-06 Score=60.59 Aligned_cols=39 Identities=23% Similarity=0.479 Sum_probs=35.2
Q ss_pred eeEEEEecCCCCCCCCceeeeeecCCchhHHHHHHHhCCeEEEec
Q 029290 142 KRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRG 186 (196)
Q Consensus 142 k~~~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eTgckI~IrG 186 (196)
+.+.+|.||. +++|+|||+.|.|+|+|+++|||+|.|..
T Consensus 13 ~~~~~i~Ip~------~~vg~IIGkgG~~Ik~I~~~tga~I~I~~ 51 (89)
T 1j5k_A 13 IITTQVTIPK------DLAGSIIGKGGQRIKQIRHESGASIKIDE 51 (89)
T ss_dssp EEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHTCCEEEECS
T ss_pred eEEEEEEECh------hhcceeECCCCHhHHHHHHHhCCeEEecC
Confidence 4567889986 68999999999999999999999999964
No 19
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=97.74 E-value=6.4e-06 Score=57.89 Aligned_cols=41 Identities=27% Similarity=0.440 Sum_probs=36.2
Q ss_pred eeEEEEecCCCCCCCCceeeeeecCCchhHHHHHHHhCCeEEEeccc
Q 029290 142 KRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRG 188 (196)
Q Consensus 142 k~~~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eTgckI~IrGkG 188 (196)
....++.||. +.+|.|+|+.|.++|+|+++|||+|.|-..|
T Consensus 4 ~~~~~i~ip~------~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~ 44 (73)
T 2axy_A 4 TLTIRLLMHG------KEVGSIIGKKGESVKKMREESGARINISEGN 44 (73)
T ss_dssp CEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECSSC
T ss_pred eEEEEEEECh------hHeeeEECCCCHHHHHHHHHHCCEEEEecCC
Confidence 3467888986 7899999999999999999999999997665
No 20
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=97.74 E-value=8.4e-06 Score=61.36 Aligned_cols=39 Identities=23% Similarity=0.363 Sum_probs=34.9
Q ss_pred EEEEecCCCCCCCCceeeeeecCCchhHHHHHHHhCCeEEEeccc
Q 029290 144 TIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRG 188 (196)
Q Consensus 144 ~~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eTgckI~IrGkG 188 (196)
+.+|.||. ++||+|||+.|.|+|+|+++|||+|.|....
T Consensus 8 ~~~i~IP~------~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~ 46 (107)
T 2hh2_A 8 EMTFSIPT------HKCGLVIGRGGENVKAINQQTGAFVEISRQL 46 (107)
T ss_dssp CEEEEEEG------GGTTTTSTTTTCHHHHHHHHSSSEEEECCCC
T ss_pred eEEEEECH------HHcCccCCCCcHHHHHHHHHhCCEEEEcCcc
Confidence 55788986 6899999999999999999999999998653
No 21
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=97.72 E-value=8.7e-06 Score=61.58 Aligned_cols=38 Identities=24% Similarity=0.516 Sum_probs=34.0
Q ss_pred EEEEecCCCCCCCCceeeeeecCCchhHHHHHHHhCCeEEEecc
Q 029290 144 TIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGR 187 (196)
Q Consensus 144 ~~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eTgckI~IrGk 187 (196)
+.+|.||. ++||+|||+.|.|+|+|+++|||+|.|.-.
T Consensus 12 ~~~i~Ip~------~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~ 49 (106)
T 2hh3_A 12 GIDVPVPR------HSVGVVIGRSGEMIKKIQNDAGVRIQFKQD 49 (106)
T ss_dssp CEEEEEET------TTHHHHHTTTTHHHHHHHHHHTCEEEECSS
T ss_pred EEEEEECH------HHcCccCCCCcHHHHHHHHHHCcEEEEecC
Confidence 56788986 678999999999999999999999999743
No 22
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=97.72 E-value=9.9e-06 Score=56.71 Aligned_cols=39 Identities=21% Similarity=0.410 Sum_probs=33.7
Q ss_pred EEEEecCCCCCCCCceeeeeecCCchhHHHHHHHhCCeEEEeccc
Q 029290 144 TIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRG 188 (196)
Q Consensus 144 ~~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eTgckI~IrGkG 188 (196)
...+.||. .++|.|+||+|.++++|+++|||+|.|--.|
T Consensus 6 ~~~i~I~~------~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g 44 (71)
T 1vig_A 6 YVEINIDH------KFHRHLIGKSGANINRIKDQYKVSVRIPPDS 44 (71)
T ss_dssp EEEEEECS------SHHHHHTCSSCCHHHHHHHHTCCEEECCCCC
T ss_pred EEEEEECH------HHhhhhcCCCCccHHHHHHHHCCEEEECCCC
Confidence 45677875 6889999999999999999999999986655
No 23
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.68 E-value=8.6e-06 Score=59.91 Aligned_cols=39 Identities=23% Similarity=0.368 Sum_probs=34.0
Q ss_pred eEEEEecCCCCCCCCceeeeeecCCchhHHHHHHHhCCeEEEecc
Q 029290 143 RTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGR 187 (196)
Q Consensus 143 ~~~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eTgckI~IrGk 187 (196)
.+..|.||. .++|.|||++|.|+|+|+++|||+|.|-..
T Consensus 17 ~t~~i~Ip~------~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~ 55 (94)
T 2cte_A 17 ASATVAIPK------EHHRFVIGKNGEKLQDLELKTATKIQIPRP 55 (94)
T ss_dssp EEEEEECCT------TTHHHHHCSSSCHHHHHHHHTTCCCBCCCT
T ss_pred eEEEEEECh------HHeeeeECCCChhHHHHHHHHCCEEEeCCC
Confidence 466888986 478999999999999999999999999643
No 24
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.66 E-value=1.3e-05 Score=59.44 Aligned_cols=40 Identities=8% Similarity=0.381 Sum_probs=34.9
Q ss_pred EEEEecCCCCCCCCceeeeeecCCchhHHHHHHHhCCeEEEecccC
Q 029290 144 TIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGS 189 (196)
Q Consensus 144 ~~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eTgckI~IrGkGS 189 (196)
+..+.||. .++|+|||++|.++|+|+++|||+|.|--.|.
T Consensus 18 ~~~i~Ip~------~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~ 57 (97)
T 2ctl_A 18 KLSVTVDP------KYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD 57 (97)
T ss_dssp EEEEECCT------TTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT
T ss_pred eEEEEECH------HHhhhcCCCCchhHHHHHHHHCCEEEecCCCC
Confidence 56788886 67899999999999999999999999976653
No 25
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.65 E-value=1.1e-05 Score=60.71 Aligned_cols=43 Identities=19% Similarity=0.428 Sum_probs=36.9
Q ss_pred eeeEEEEecCCCCCCCCceeeeeecCCchhHHHHHHHhCCeEEEecccC
Q 029290 141 VKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGS 189 (196)
Q Consensus 141 vk~~~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eTgckI~IrGkGS 189 (196)
+.....+.||. .++|+|||++|.|+|+|+++|||+|.|--.|+
T Consensus 15 ap~~~~i~Ip~------~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~ 57 (104)
T 2ctk_A 15 VPVTIEVEVPF------DLHRYVIGQKGSGIRKMMDEFEVNIHVPAPEL 57 (104)
T ss_dssp SCEEEEEECCH------HHHHHHHCSSSHHHHHHHHHTCCEEECCCTTT
T ss_pred CCEEEEEEECh------HHccceeCCCchHHHHHHHHHCCEEEecCCCC
Confidence 34677888986 68899999999999999999999999876653
No 26
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.38 E-value=6e-05 Score=55.77 Aligned_cols=40 Identities=15% Similarity=0.385 Sum_probs=35.2
Q ss_pred EEEEecCCCCCCCCceeeeeecCCchhHHHHHHHhCCeEEEecccC
Q 029290 144 TIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGS 189 (196)
Q Consensus 144 ~~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eTgckI~IrGkGS 189 (196)
+..+.||. .++|+|||++|.|+|+|+++|||+|.|-..|+
T Consensus 18 t~~i~Ip~------~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~ 57 (95)
T 2ctm_A 18 SEDVPLDH------RVHARIIGARGKAIRKIMDEFKVDIRFPQSGA 57 (95)
T ss_dssp CEEEECCT------TTHHHHHCSSSCHHHHHHHHHTCEEECCCTTC
T ss_pred EEEEEECH------HHccccCCCCcchHHHHHHHHCCeEEecCCCC
Confidence 55788886 56799999999999999999999999987764
No 27
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=97.11 E-value=0.00012 Score=57.30 Aligned_cols=43 Identities=21% Similarity=0.470 Sum_probs=37.1
Q ss_pred eeeEEEEecCCCCCCCCceeeeeecCCchhHHHHHHHhCCeEEEecccC
Q 029290 141 VKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGS 189 (196)
Q Consensus 141 vk~~~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eTgckI~IrGkGS 189 (196)
.....++.||. +++|+|||++|.++|+|+++|||+|.|-..+.
T Consensus 83 ~~~~~~i~vp~------~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~ 125 (163)
T 3krm_A 83 VKLETHIRVPA------SAAGRVIGKGGKTVNELQNLTAAEVVVPRDQT 125 (163)
T ss_dssp CCEEEEEEEET------TTHHHHHCGGGHHHHHHHHHHCCEEECCTTCC
T ss_pred CceEEEEEcCh------hheeeEEcCCChHHHHHHHHhCCeEEECCCCC
Confidence 34566888985 78999999999999999999999999987653
No 28
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=97.00 E-value=0.0002 Score=56.87 Aligned_cols=40 Identities=15% Similarity=0.402 Sum_probs=34.9
Q ss_pred eEEEEecCCCCCCCCceeeeeecCCchhHHHHHHHhCCeEEEeccc
Q 029290 143 RTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRG 188 (196)
Q Consensus 143 ~~~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eTgckI~IrGkG 188 (196)
.+.++.||. +++|+|||++|.|+|+|+++|||+|.|-...
T Consensus 104 ~~~~i~vp~------~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~ 143 (174)
T 1j4w_A 104 QEFNFIVPT------GKTGLIIGKGGETIKSISQQSGARIELQRNP 143 (174)
T ss_dssp CEEEEEEET------TTHHHHHCGGGHHHHHHHHHHCCEEEEECCC
T ss_pred EEEEEEECh------HHcCeeECCCchHHHHHHHHHCCEEEECCCC
Confidence 356788885 6799999999999999999999999998653
No 29
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=96.97 E-value=0.00015 Score=56.45 Aligned_cols=37 Identities=24% Similarity=0.539 Sum_probs=32.5
Q ss_pred EEEecCCCCCCCCceeeeeecCCchhHHHHHHHhCCeEEEecc
Q 029290 145 IRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGR 187 (196)
Q Consensus 145 ~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eTgckI~IrGk 187 (196)
.++.||. +++|+|||++|.++|+|+++|||+|.|-..
T Consensus 93 ~~i~vp~------~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~ 129 (164)
T 2jvz_A 93 IDVPVPR------HSVGVVIGRSGEMIKKIQNDAGVRIQFKQD 129 (164)
T ss_dssp BCCEEET------TTHHHHHCSSSHHHHHHHHHTCCEEEECCC
T ss_pred EEEEECh------hhccccCCCCcHhHHHHHHHHCCeEEEeCC
Confidence 4567774 689999999999999999999999999754
No 30
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=96.88 E-value=0.00017 Score=57.34 Aligned_cols=40 Identities=15% Similarity=0.379 Sum_probs=35.3
Q ss_pred eEEEEecCCCCCCCCceeeeeecCCchhHHHHHHHhCCeEEEeccc
Q 029290 143 RTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRG 188 (196)
Q Consensus 143 ~~~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eTgckI~IrGkG 188 (196)
.+.++.||. +++|+|||++|.++|+|+++|||+|.|-...
T Consensus 104 ~~~~i~Vp~------~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~ 143 (178)
T 2anr_A 104 NQVKIIVPN------STAGLIIGKGGATVKAIMEQSGAWVQLSQKP 143 (178)
T ss_dssp GEEEEEEEH------HHHHHHHCGGGHHHHHHHHHSSCEEEECCCC
T ss_pred eEEEEEEch------hheeeeECCCcHHHHHHHHHHCCEEEEeCCC
Confidence 466888985 7899999999999999999999999997653
No 31
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=96.80 E-value=0.00015 Score=56.52 Aligned_cols=38 Identities=32% Similarity=0.578 Sum_probs=34.2
Q ss_pred eEEEEecCCCCCCCCceeeeeecCCchhHHHHHHHhCCeEEEec
Q 029290 143 RTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRG 186 (196)
Q Consensus 143 ~~~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eTgckI~IrG 186 (196)
...++.||. +++|+|||++|.++|+|+++|||+|.|.+
T Consensus 89 ~~~~i~vp~------~~~g~iIGkgG~~Ik~i~~~tga~I~i~~ 126 (160)
T 2jzx_A 89 VTLRLVVPA------SQCGSLIGKGGCKIKEIRESTGAQVQVAG 126 (160)
T ss_dssp EEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHSSEECCCC
T ss_pred EEEEEEECh------hheeeEECCCCHHHHHHHHHhCCeEEECC
Confidence 466888885 79999999999999999999999999975
No 32
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=96.65 E-value=0.00039 Score=58.72 Aligned_cols=29 Identities=24% Similarity=0.540 Sum_probs=26.9
Q ss_pred eeeeeecCCchhHHHHHHHhCCeEEEecc
Q 029290 159 FVGRLLGPRGNSLKRVEASTECRVLIRGR 187 (196)
Q Consensus 159 fvG~ilGPrG~tlK~le~eTgckI~IrGk 187 (196)
.+|||+|+.|.|+|.||..|||+|.|-|+
T Consensus 139 ~~GriIGk~G~tik~ie~~Tg~~I~v~~~ 167 (219)
T 2e3u_A 139 VRGRIIGRKGRTRQIIEEMSGASVSVYGK 167 (219)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEETT
T ss_pred hhheeECCCchHHHHHHHHhCceEEECCe
Confidence 58999999999999999999999999763
No 33
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=96.62 E-value=0.00038 Score=57.86 Aligned_cols=30 Identities=20% Similarity=0.420 Sum_probs=27.8
Q ss_pred ceeeeeecCCchhHHHHHHHhCCeEEEecc
Q 029290 158 NFVGRLLGPRGNSLKRVEASTECRVLIRGR 187 (196)
Q Consensus 158 NfvG~ilGPrG~tlK~le~eTgckI~IrGk 187 (196)
..+|||+|+.|.|+|.||..|||+|.|-|+
T Consensus 107 r~~GrIIGk~G~tik~iE~~Tg~~I~v~~~ 136 (191)
T 1tua_A 107 RIKGRIIGEGGRARRTIEEMTDTYINVGEY 136 (191)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHTCEEEECSS
T ss_pred HHhhheeCCCccHHHHHHHHHCceEEEcCC
Confidence 368999999999999999999999999875
No 34
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=96.60 E-value=0.0005 Score=50.96 Aligned_cols=41 Identities=20% Similarity=0.404 Sum_probs=34.6
Q ss_pred EEEEecCCCCCCCCceeeeeecCCchhHHHHHHHh-CCeEEEecccCC
Q 029290 144 TIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEAST-ECRVLIRGRGSI 190 (196)
Q Consensus 144 ~~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eT-gckI~IrGkGS~ 190 (196)
+..+.||. .+++.|+||+|.++++|+++| ||+|.|--.|+.
T Consensus 18 t~~i~Ip~------~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~ 59 (95)
T 2ctj_A 18 EVEVSIPA------KLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSG 59 (95)
T ss_dssp CEEEECCH------HHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTT
T ss_pred EEEEEECH------HHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCC
Confidence 45677886 578899999999999999999 999998766653
No 35
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=95.84 E-value=0.0017 Score=48.30 Aligned_cols=37 Identities=8% Similarity=0.236 Sum_probs=32.3
Q ss_pred eEEEEecCCCCCCCCceeeeeecCCchhHHHHHHHhCCe-EEEe
Q 029290 143 RTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECR-VLIR 185 (196)
Q Consensus 143 ~~~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eTgck-I~Ir 185 (196)
....+.||. .++|.+|||+|.+.|+|+++||++ |.|-
T Consensus 15 ~i~~i~I~~------dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~ 52 (91)
T 2cpq_A 15 FHEEFVVRE------DLMGLAIGTHGSNIQQARKVPGVTAIELD 52 (91)
T ss_dssp EEEEEECCH------HHHHHHHTTTTHHHHHHHTSTTEEEEEEE
T ss_pred eEEEEEECh------HHhhhhcCCCcHHHHHHHHHhCCeEEEEE
Confidence 355677885 689999999999999999999998 9985
No 36
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=94.85 E-value=0.0077 Score=57.88 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=35.8
Q ss_pred eeeEEEEecCCCCCCCCceeeeeecCCchhHHHHHHHhCCeEEEecccC
Q 029290 141 VKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGS 189 (196)
Q Consensus 141 vk~~~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eTgckI~IrGkGS 189 (196)
.-+...+-||. ..||.+|||+|.|+|.|+++|||+|.|--.|.
T Consensus 565 ap~~~~~~I~~------~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d~G~ 607 (630)
T 3u1k_A 565 GPVVETVQVPL------SKRAKFVGPGGYNLKKLQAETGVTISQVDEET 607 (630)
T ss_dssp CCEEEEEECCH------HHHHHHHCGGGHHHHHHHHHHCCEEEECSSSE
T ss_pred CCeEEEEEeCh------hHhheeECCCChhHHHHHHHHCCEEEEcCCcE
Confidence 33466788886 67999999999999999999999999965554
No 37
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=94.36 E-value=0.0083 Score=50.56 Aligned_cols=36 Identities=28% Similarity=0.493 Sum_probs=32.5
Q ss_pred EEEEecCCCCCCCCceeeeeecCCchhHHHHHHHhCCeEEEe
Q 029290 144 TIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIR 185 (196)
Q Consensus 144 ~~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eTgckI~Ir 185 (196)
..++.||. +.+|.|+|+.|.|.+.|+++|||+|.|-
T Consensus 35 i~~i~IP~------~kig~lIG~gGk~Ik~I~e~tgvkI~I~ 70 (219)
T 2e3u_A 35 EEYVKIPK------DRIAVLIGKKGQTKKEIEKRTKTKITID 70 (219)
T ss_dssp EEEEECCH------HHHHHHHCGGGHHHHHHHHHHTEEEEEC
T ss_pred EEEEEeCH------HHhhhhhcccHHHHHHHHHHHCcEEEEE
Confidence 55788886 6789999999999999999999999986
No 38
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=93.36 E-value=0.038 Score=43.14 Aligned_cols=39 Identities=23% Similarity=0.512 Sum_probs=34.0
Q ss_pred EEEecCCCCCCCCceeeeeecCCchhHHHHHHHhCC-eEEEecccC
Q 029290 145 IRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTEC-RVLIRGRGS 189 (196)
Q Consensus 145 ~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eTgc-kI~IrGkGS 189 (196)
..|.||- +.+|++||-+|.|+|.+++.||| +|.|.+...
T Consensus 69 ~~v~Vp~------~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~ 108 (144)
T 2qnd_A 69 DVIQVPR------NLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENE 108 (144)
T ss_dssp EEEEEEG------GGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECT
T ss_pred EEEEECH------HHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCC
Confidence 5677775 67899999999999999999998 999998653
No 39
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=92.71 E-value=0.033 Score=44.56 Aligned_cols=49 Identities=8% Similarity=0.203 Sum_probs=37.6
Q ss_pred cCCCCCCCCCCCCCceeeEEEEecCCCCCCCCceeeeeecCCchhHHHHHHHhCCeEEEec
Q 029290 126 AQNWLSSQGSSSGLIVKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRG 186 (196)
Q Consensus 126 ~~~~~~pp~~~~~p~vk~~~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eTgckI~IrG 186 (196)
.+.|+.+ .+-..|.| ++|.. ..+|.||||.|+-++.||..|++.|.|--
T Consensus 45 ~PwW~~~-e~L~dPlV-----F~vE~------~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~ 93 (140)
T 3v69_A 45 LPKWFHV-ECLEDPKR-----LYVEP------RLLEIMFGKDGEHIPHLESMLHTLIHVNV 93 (140)
T ss_dssp CCTTCCG-GGGSSCEE-----EEECG------GGHHHHHCGGGTTHHHHHHHHTSEEEEEC
T ss_pred CCCccCH-HHCCCCeE-----EEEeh------hhhhcccCCCcCccchHHhhcceeEEEec
Confidence 3678766 44444433 45543 78999999999999999999999998863
No 40
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=92.03 E-value=0.036 Score=43.28 Aligned_cols=32 Identities=9% Similarity=0.266 Sum_probs=28.1
Q ss_pred EEEEecCCCCCCCCceeeeeecCCchhHHHHHHHhCCe
Q 029290 144 TIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECR 181 (196)
Q Consensus 144 ~~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eTgck 181 (196)
++++.||. .++|.++|++|.++++|++++|..
T Consensus 5 ~~~~~Vp~------~~vG~~IG~~G~~I~~i~~e~gI~ 36 (144)
T 2qnd_A 5 HEQFIVRE------DLMGLAIGTHGANIQQARKVPGVT 36 (144)
T ss_dssp EEEEECCG------GGHHHHHCGGGHHHHHHHTSTTEE
T ss_pred EEEEEECC------cceeeEECCChhHHHHHHHHHCCe
Confidence 56788886 689999999999999999999943
No 41
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=92.02 E-value=0.078 Score=39.40 Aligned_cols=36 Identities=14% Similarity=0.309 Sum_probs=28.9
Q ss_pred eEEEEecCCCCCCCCceeeeeecCCchhHHHHHHH-hCCeEEE
Q 029290 143 RTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEAS-TECRVLI 184 (196)
Q Consensus 143 ~~~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~e-TgckI~I 184 (196)
.+.+|.||.+ |-+.|||++|.++|+|+++ ++|.|.+
T Consensus 27 ~t~~i~vp~~------~h~~IIG~~G~~Ik~i~~~~~~v~I~f 63 (102)
T 2ctf_A 27 TVSSVAAPSW------LHRFIIGKKGQNLAKITQQMPKVHIEF 63 (102)
T ss_dssp EEEEEECCST------THHHHHTTTTCHHHHHHHHCSSSEEEE
T ss_pred EEEEEEeCHH------HHhhhcCCCCccHHHHHHHcCCcEEEe
Confidence 4678889964 4578999999999999996 5776554
No 42
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=91.96 E-value=0.032 Score=54.55 Aligned_cols=41 Identities=22% Similarity=0.488 Sum_probs=0.0
Q ss_pred EEEEecCCCCCCCCceeeeeecCCchhHHHHHHHhCCeEEEecccCC
Q 029290 144 TIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSI 190 (196)
Q Consensus 144 ~~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eTgckI~IrGkGS~ 190 (196)
...+-||. ..+|.+|||.|.|+|.|+++||++|-|-=.|.+
T Consensus 571 ~~~~~i~~------~ki~~vig~gg~~i~~i~~~tg~~idi~ddG~v 611 (726)
T 4aid_A 571 IETINIPT------DKIREVIGSGGKVIREIVATTGAKVDINDDGVV 611 (726)
T ss_dssp -----------------------------------------------
T ss_pred EEEEeCCH------HHHHhhcCCCchhHHHHHHHHCCceeEECCceE
Confidence 45566775 568999999999999999999999999766654
No 43
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=90.16 E-value=0.1 Score=47.48 Aligned_cols=39 Identities=10% Similarity=0.275 Sum_probs=33.4
Q ss_pred eeEEEEecCCCCCCCCceeeeeecCCc--hhHHHHHHHhCCeEEEec
Q 029290 142 KRTIRVDIPVEKYPNFNFVGRLLGPRG--NSLKRVEASTECRVLIRG 186 (196)
Q Consensus 142 k~~~kv~IPv~~~P~~NfvG~ilGPrG--~tlK~le~eTgckI~IrG 186 (196)
+.+.++.||. .|...|+|.+| .++++|.++|||+|.+=-
T Consensus 29 ~VTl~v~Ip~------~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD 69 (376)
T 3n89_A 29 RVTLNMEFES------QYYSLMTSDNGDHENVASIMAETNTLIQLPD 69 (376)
T ss_dssp EEEEEEECCG------GGHHHHHSCCSSSCSHHHHHHHHTCEEECCC
T ss_pred EEEEEEEEch------hhhhhhccCCChHHHHHHHHHHhCCeEECCC
Confidence 4567888885 56778999999 999999999999999843
No 44
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=77.54 E-value=0.46 Score=46.31 Aligned_cols=42 Identities=17% Similarity=0.361 Sum_probs=0.0
Q ss_pred EEEEecCCCCCCCCceeeeeecCCchhHHHHHHHhCCeEEEecccCCC
Q 029290 144 TIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIK 191 (196)
Q Consensus 144 ~~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eTgckI~IrGkGS~k 191 (196)
...+-||. ..+|.+|||.|.|++.|.++||++|-|...|.+.
T Consensus 561 ~~~~~i~~------~ki~~~ig~gGk~I~~I~~~~G~~IdI~~dg~v~ 602 (723)
T 3cdi_A 561 IHTIKINP------DKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVK 602 (723)
T ss_dssp ------------------------------------------------
T ss_pred EEEEEECH------HHhcccccccceeeeeeehhhCceEEecCCccEE
Confidence 34555665 4578999999999999999999999999877653
No 45
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=74.68 E-value=0.28 Score=48.13 Aligned_cols=41 Identities=29% Similarity=0.659 Sum_probs=12.7
Q ss_pred EEEecCCCCCCCCceeeeeecCCchhHHHHHHHhCCeEEEecccCCC
Q 029290 145 IRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIK 191 (196)
Q Consensus 145 ~kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eTgckI~IrGkGS~k 191 (196)
..+-||.+ .+|.+|||+|.++|.|+++||+.|-|-..|.+.
T Consensus 600 ~~~~I~~~------ki~~vIG~gGk~Ik~I~~~~G~~IdI~~dG~v~ 640 (757)
T 1e3p_A 600 ITVKIPVD------KIGEVIGPKRQMINQIQEDTGAEITIEDDGTIY 640 (757)
T ss_dssp CCC------------------------CTTCCCCCSCC--------C
T ss_pred EEEEEChH------HeehcccccceeeehhhHhhCCEEEecCCceEE
Confidence 34667764 568999999999999999999999998776554
No 46
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=58.65 E-value=3.2 Score=32.79 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=24.8
Q ss_pred eeeeeecCCchhHHHHHHHhCCeEEEe
Q 029290 159 FVGRLLGPRGNSLKRVEASTECRVLIR 185 (196)
Q Consensus 159 fvG~ilGPrG~tlK~le~eTgckI~Ir 185 (196)
-+|..+|++|...+.+++++|-||-|-
T Consensus 46 ~vGa~IG~~G~ri~~i~~elgekIdIV 72 (144)
T 2cxc_A 46 EAGRAIGRGGRLIKLLREALGKNIEVV 72 (144)
T ss_dssp CHHHHHCGGGHHHHHHHHHHSSEEEEE
T ss_pred CccccCccCchHHHHHHHHhCCeeEEE
Confidence 499999999999999999999999664
No 47
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=39.07 E-value=14 Score=29.40 Aligned_cols=19 Identities=16% Similarity=0.309 Sum_probs=17.0
Q ss_pred hHHHHHHHhCCeEEEeccc
Q 029290 170 SLKRVEASTECRVLIRGRG 188 (196)
Q Consensus 170 tlK~le~eTgckI~IrGkG 188 (196)
.+++||++.|+++++|++|
T Consensus 40 ~i~~LE~~lg~~Lf~R~~~ 58 (303)
T 3isp_A 40 RIKSLEQQVGQVLVVREKP 58 (303)
T ss_dssp HHHHHHHHHTSCCEECSSS
T ss_pred HHHHHHHHhCCeeEEcCCC
Confidence 5899999999999999863
No 48
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=36.12 E-value=29 Score=22.84 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCccC
Q 029290 58 LPNAYRLLNQEIMRVTTLLGNASVL 82 (196)
Q Consensus 58 lph~~rLLnqEI~RV~~~l~~~~~~ 82 (196)
|-+.+-=+.|||.|+...|...+++
T Consensus 23 Le~~c~~~eQEieRL~~LLkqHgll 47 (48)
T 3vmx_A 23 LEFSCSEKEQEIERLNKLLKQNGLL 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHccHHHHHHHHHHHHHHHcCCC
Confidence 3455556779999999999877664
No 49
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=31.49 E-value=18 Score=28.41 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=17.9
Q ss_pred hHHHHHHHhCCeEEEecccCC
Q 029290 170 SLKRVEASTECRVLIRGRGSI 190 (196)
Q Consensus 170 tlK~le~eTgckI~IrGkGS~ 190 (196)
.+|+||++.|+++++|....+
T Consensus 37 ~i~~LE~~lg~~Lf~R~~~~~ 57 (306)
T 3hhg_A 37 IVKRLEEKLGVNLLNRTTRQL 57 (306)
T ss_dssp HHHHHHHHHTSCCEETTSSSC
T ss_pred HHHHHHHHhCCeeEeecCCCe
Confidence 589999999999999976544
No 50
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=30.51 E-value=13 Score=29.20 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=12.1
Q ss_pred hHHHHHHHhCCeEEEe
Q 029290 170 SLKRVEASTECRVLIR 185 (196)
Q Consensus 170 tlK~le~eTgckI~Ir 185 (196)
.+++||++.|+++++|
T Consensus 38 ~i~~LE~~lg~~Lf~R 53 (306)
T 3fzv_A 38 AVKGLEESFGVQLFIR 53 (306)
T ss_dssp HHHHHHHHC-CCCC--
T ss_pred HHHHHHHHhCCeeEee
Confidence 4799999999999999
No 51
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=30.42 E-value=17 Score=28.12 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=17.7
Q ss_pred hhHHHHHHHhCCeEEEecccC
Q 029290 169 NSLKRVEASTECRVLIRGRGS 189 (196)
Q Consensus 169 ~tlK~le~eTgckI~IrGkGS 189 (196)
..+|+||++.|+++++|..+.
T Consensus 34 ~~i~~LE~~lg~~Lf~R~~~~ 54 (291)
T 3szp_A 34 RRIQALEDSLNLRLLNRHARK 54 (291)
T ss_dssp HHHHHHHHHHTCCCEEEETTE
T ss_pred HHHHHHHHHhCCceEeecCCC
Confidence 358999999999999997543
No 52
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=29.24 E-value=13 Score=33.60 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=27.9
Q ss_pred EEEEecCCCCCCCCceeeeeecCCc--hhHHHHHHHhCCeEEEecccCC
Q 029290 144 TIRVDIPVEKYPNFNFVGRLLGPRG--NSLKRVEASTECRVLIRGRGSI 190 (196)
Q Consensus 144 ~~kv~IPv~~~P~~NfvG~ilGPrG--~tlK~le~eTgckI~IrGkGS~ 190 (196)
+..|.|+. -++..|||-+| .++++|.++|||+|..=..++.
T Consensus 187 s~~v~V~~------~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~ 229 (376)
T 3n89_A 187 TLHFTLST------YYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNR 229 (376)
T ss_dssp EEEEEEEG------GGHHHHTCCTTSCCHHHHHHHHHTCEEECC-----
T ss_pred EEEEEeCH------HHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCc
Confidence 34455554 34678999998 5669999999999998766654
No 53
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=29.11 E-value=15 Score=33.20 Aligned_cols=39 Identities=18% Similarity=0.358 Sum_probs=31.9
Q ss_pred EEecCCCCCCCCceeeeeecCCchhHHHHHHHh-CCeEEEe
Q 029290 146 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEAST-ECRVLIR 185 (196)
Q Consensus 146 kv~IPv~~~P~~NfvG~ilGPrG~tlK~le~eT-gckI~Ir 185 (196)
||-|=-. -|+++-||..+|++|..++.|.++. |=||-|-
T Consensus 238 KIAV~s~-d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi 277 (366)
T 1k0r_A 238 KIAVRSN-VAGLNAKGACIGPMGQRVRNVMSELSGEKIDII 277 (366)
T ss_dssp EEEEEES-STTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEE
T ss_pred EEEEEeC-CCCCCCcccccCCcchHHHHHHHHhCCCeEEEE
Confidence 4444332 4789999999999999999999999 8888764
No 54
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=27.58 E-value=11 Score=29.82 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=16.3
Q ss_pred eeeeecCCchhHHHHHHHh
Q 029290 160 VGRLLGPRGNSLKRVEAST 178 (196)
Q Consensus 160 vG~ilGPrG~tlK~le~eT 178 (196)
.|.|||-+|-||+.||--+
T Consensus 44 ~glLIGK~G~TL~ALQyL~ 62 (152)
T 2pt7_G 44 SALLIGEKGYRYKALSYLL 62 (152)
T ss_dssp GTTTTCGGGHHHHHHHHHH
T ss_pred cceEECCCCcchHHHHHHH
Confidence 5899999999999998543
No 55
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=26.53 E-value=21 Score=27.91 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=15.0
Q ss_pred hhHHHHHHHhCCeEEEecccCC
Q 029290 169 NSLKRVEASTECRVLIRGRGSI 190 (196)
Q Consensus 169 ~tlK~le~eTgckI~IrGkGS~ 190 (196)
..+|+||++.|+++++|....+
T Consensus 34 ~~i~~LE~~lg~~Lf~R~~~~~ 55 (294)
T 1ixc_A 34 RQMQALEADLGVVLLERSHRGI 55 (294)
T ss_dssp HHHHHHHHHHTSCCBC-----C
T ss_pred HHHHHHHHHHCCEEEEeCCCCe
Confidence 3589999999999999976544
No 56
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=26.20 E-value=22 Score=29.41 Aligned_cols=28 Identities=32% Similarity=0.623 Sum_probs=24.8
Q ss_pred ceeeeeecCCchhHHHHHHHhCCeEEEe
Q 029290 158 NFVGRLLGPRGNSLKRVEASTECRVLIR 185 (196)
Q Consensus 158 NfvG~ilGPrG~tlK~le~eTgckI~Ir 185 (196)
+.+.|++|++|.-+..|.+.++|+|.|=
T Consensus 157 ~~~~rl~~~~~~~l~~l~~~~~~~i~vG 184 (235)
T 2z0s_A 157 AKVPRVIGRKMSMLKTLEEKTECKIFVA 184 (235)
T ss_dssp GGSGGGTCGGGHHHHHHHHHHCCEEEEE
T ss_pred HHhHHHhcCcchHHHHhcccCCeEEEEe
Confidence 5678899999999999999999999873
No 57
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=25.21 E-value=35 Score=26.98 Aligned_cols=19 Identities=16% Similarity=0.342 Sum_probs=16.8
Q ss_pred hHHHHHHHhCCeEEEeccc
Q 029290 170 SLKRVEASTECRVLIRGRG 188 (196)
Q Consensus 170 tlK~le~eTgckI~IrGkG 188 (196)
.+|+||++.|+++++|...
T Consensus 44 ~I~~LE~~lg~~Lf~R~~~ 62 (310)
T 2esn_A 44 ALGRLRQGLDDELFLRQGN 62 (310)
T ss_dssp HHHHHHHHHTSCCEEEETT
T ss_pred HHHHHHHhhCCcceeecCC
Confidence 5899999999999999754
No 58
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=24.19 E-value=33 Score=27.20 Aligned_cols=22 Identities=14% Similarity=0.442 Sum_probs=18.5
Q ss_pred hhHHHHHHHhCCeEEEecccCC
Q 029290 169 NSLKRVEASTECRVLIRGRGSI 190 (196)
Q Consensus 169 ~tlK~le~eTgckI~IrGkGS~ 190 (196)
..+++||++.|+++++|....+
T Consensus 35 ~~i~~LE~~lg~~Lf~R~~r~~ 56 (305)
T 3fxq_A 35 AAIQQLEDELKAPLLVRTKRGV 56 (305)
T ss_dssp HHHHHHHHHHTSCSEEECSSSE
T ss_pred HHHHHHHHHhCCeeEEecCCCc
Confidence 3589999999999999976543
No 59
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=23.94 E-value=20 Score=30.84 Aligned_cols=39 Identities=18% Similarity=0.371 Sum_probs=30.9
Q ss_pred EEecCCCCCCCCceeeeeecCCchhHHHH-HHHhCCeEEEe
Q 029290 146 RVDIPVEKYPNFNFVGRLLGPRGNSLKRV-EASTECRVLIR 185 (196)
Q Consensus 146 kv~IPv~~~P~~NfvG~ilGPrG~tlK~l-e~eTgckI~Ir 185 (196)
||-|=.. -|+++-||..+|++|..++.+ ++-.|=+|-|-
T Consensus 115 KiAV~s~-d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi 154 (251)
T 2asb_A 115 KIAVRSN-VAGLNAKGACIGPMGQRVRNVMSELSGEKIDII 154 (251)
T ss_dssp EEEEEES-STTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEE
T ss_pred EEEEEcC-CCCCCHHHHHhCCCchHHHHHHHHhCCCeEEEE
Confidence 4544433 388999999999999999999 77778888663
No 60
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=22.86 E-value=55 Score=22.23 Aligned_cols=26 Identities=35% Similarity=0.410 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCccCC
Q 029290 58 LPNAYRLLNQEIMRVTTLLGNASVLG 83 (196)
Q Consensus 58 lph~~rLLnqEI~RV~~~l~~~~~~~ 83 (196)
|-+.+---+|||.|...+|+..+++.
T Consensus 30 Le~~c~e~eQEieRL~~LLkqHgl~~ 55 (58)
T 3a2a_A 30 LEFSCSEKEQEIERLNKLLRQHGLLG 55 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 44556667899999999999888753
No 61
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=22.42 E-value=22 Score=29.49 Aligned_cols=27 Identities=19% Similarity=0.512 Sum_probs=23.8
Q ss_pred ceeeeeecCCchhHHHHHHHhCCeEEE
Q 029290 158 NFVGRLLGPRGNSLKRVEASTECRVLI 184 (196)
Q Consensus 158 NfvG~ilGPrG~tlK~le~eTgckI~I 184 (196)
+.+.|++|+++.-++.|.+.++|.|.|
T Consensus 145 ~~v~rl~~~~~~~l~~l~~~~~~ei~v 171 (229)
T 2ba0_A 145 ARVPRVIGKKGSMIKLLKSELDVQIVV 171 (229)
T ss_dssp GGHHHHHCGGGHHHHHHHHHHTCEEEE
T ss_pred HHhHHHhcCCchHHHHhcccCCeEEEE
Confidence 456689999999999999999999987
No 62
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=21.11 E-value=28 Score=29.15 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=31.5
Q ss_pred ceeeEEEEecCCCCCCCCceeeeeecCCchhHHHH--------HHHhCCeEEEe
Q 029290 140 IVKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRV--------EASTECRVLIR 185 (196)
Q Consensus 140 ~vk~~~kv~IPv~~~P~~NfvG~ilGPrG~tlK~l--------e~eTgckI~Ir 185 (196)
.++....|+|.-+ +-.|-|||-+|..+|+| |+.+||+|.+.
T Consensus 237 ~~~i~a~i~ve~~-----~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~ 285 (308)
T 3iev_A 237 MLVIKGEIIVDRE-----NLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLE 285 (308)
T ss_dssp SEEEEEEEEESSG-----GGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred eEEEEEEEEEccC-----CcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 3566677777765 44588999999999976 77899998764
No 63
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=20.76 E-value=66 Score=22.72 Aligned_cols=34 Identities=32% Similarity=0.417 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHH
Q 029290 38 EKYLSELLAERHKLNPFLPVLPNAYRLLNQEIMRVTT 74 (196)
Q Consensus 38 ~~YL~ELl~Ek~kL~pf~~vlph~~rLLnqEI~RV~~ 74 (196)
.++|.+||.|...-..- |.-...||-.||.|...
T Consensus 31 ~~Hl~~LL~EsEatnar---L~eq~~lLK~EIRRlER 64 (71)
T 3bbp_D 31 ADHLNGLLRETEATNAI---LMEQIKLLKSEIRRLER 64 (71)
T ss_dssp TSHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccchHHH---HHHHHHHHHHHHHHHHh
Confidence 46899999998876653 67788999999999865
Done!