BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029292
(195 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JWH|C Chain C, Crystal Structure Of Human Protein Kinase Ck2 Holoenzyme
pdb|1JWH|D Chain D, Crystal Structure Of Human Protein Kinase Ck2 Holoenzyme
pdb|2R6M|A Chain A, Crystal Structure Of Rat Ck2-Beta Subunit
pdb|2R6M|B Chain B, Crystal Structure Of Rat Ck2-Beta Subunit
pdb|4DGL|A Chain A, Crystal Structure Of The Ck2 Tetrameric Holoenzyme
pdb|4DGL|B Chain B, Crystal Structure Of The Ck2 Tetrameric Holoenzyme
Length = 215
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 72/91 (79%)
Query: 102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y ALD+ILD+E Q
Sbjct: 9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68
Query: 162 NELVESAAEMLYGLIHVRYILTSKGMAAMVK 192
++L+E AAEMLYGLIH RYILT++G+A M++
Sbjct: 69 SDLIEQAAEMLYGLIHARYILTNRGIAQMLE 99
>pdb|1RQF|A Chain A, Structure Of Ck2 Beta Subunit Crystallized In The Presence
Of A P21waf1 Peptide
pdb|1RQF|B Chain B, Structure Of Ck2 Beta Subunit Crystallized In The Presence
Of A P21waf1 Peptide
pdb|1RQF|D Chain D, Structure Of Ck2 Beta Subunit Crystallized In The Presence
Of A P21waf1 Peptide
pdb|1RQF|E Chain E, Structure Of Ck2 Beta Subunit Crystallized In The Presence
Of A P21waf1 Peptide
pdb|1RQF|G Chain G, Structure Of Ck2 Beta Subunit Crystallized In The Presence
Of A P21waf1 Peptide
pdb|1RQF|H Chain H, Structure Of Ck2 Beta Subunit Crystallized In The Presence
Of A P21waf1 Peptide
pdb|1RQF|J Chain J, Structure Of Ck2 Beta Subunit Crystallized In The Presence
Of A P21waf1 Peptide
pdb|1RQF|K Chain K, Structure Of Ck2 Beta Subunit Crystallized In The Presence
Of A P21waf1 Peptide
Length = 184
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 72/91 (79%)
Query: 102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y ALD+ILD+E Q
Sbjct: 15 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 74
Query: 162 NELVESAAEMLYGLIHVRYILTSKGMAAMVK 192
++L+E AAEMLYGLIH RYILT++G+A M++
Sbjct: 75 SDLIEQAAEMLYGLIHARYILTNRGIAQMLE 105
>pdb|3EED|A Chain A, Crystal Structure Of Human Protein Kinase Ck2 Regulatory
Subunit (Ck2beta; Mutant 1-193)
pdb|3EED|B Chain B, Crystal Structure Of Human Protein Kinase Ck2 Regulatory
Subunit (Ck2beta; Mutant 1-193)
Length = 193
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 72/91 (79%)
Query: 102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y ALD+ILD+E Q
Sbjct: 9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68
Query: 162 NELVESAAEMLYGLIHVRYILTSKGMAAMVK 192
++L+E AAEMLYGLIH RYILT++G+A M++
Sbjct: 69 SDLIEQAAEMLYGLIHARYILTNRGIAQMLE 99
>pdb|1QF8|A Chain A, Truncated Form Of Casein Kinase Ii Beta Subunit (2-182)
From Homo Sapiens
pdb|1QF8|B Chain B, Truncated Form Of Casein Kinase Ii Beta Subunit (2-182)
From Homo Sapiens
Length = 182
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 69/91 (75%)
Query: 102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y ALD ILD+E Q
Sbjct: 9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDXILDLEPDEELEDNPNQ 68
Query: 162 NELVESAAEMLYGLIHVRYILTSKGMAAMVK 192
++L+E AAE LYGLIH RYILT++G+A ++
Sbjct: 69 SDLIEQAAEXLYGLIHARYILTNRGIAQXLE 99
>pdb|3U0O|A Chain A, The Crystal Structure Of Selenophosphate Synthetase From
E. Coli
pdb|3U0O|B Chain B, The Crystal Structure Of Selenophosphate Synthetase From
E. Coli
Length = 347
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 144 DLILDVESSHGDMFT---EEQNELVESAAEMLYGLIHVRYILTSKGMAAMVKFR 194
DL+ D ++S G + E +NE+ +AAE L + ++ ++G AMV+ R
Sbjct: 294 DLLCDPQTSGGLLLAVMPEAENEVKATAAEFGIELTAIGELVPARGGRAMVEIR 347
>pdb|2O0Y|A Chain A, Crystal Structure Of Putative Transcriptional Regulator
Rha1_ro06953 (Iclr-Family) From Rhodococcus Sp.
pdb|2O0Y|B Chain B, Crystal Structure Of Putative Transcriptional Regulator
Rha1_ro06953 (Iclr-Family) From Rhodococcus Sp.
pdb|2O0Y|C Chain C, Crystal Structure Of Putative Transcriptional Regulator
Rha1_ro06953 (Iclr-Family) From Rhodococcus Sp.
pdb|2O0Y|D Chain D, Crystal Structure Of Putative Transcriptional Regulator
Rha1_ro06953 (Iclr-Family) From Rhodococcus Sp
Length = 260
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 142 ALDLILDV--ESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMA 188
A +LI DV +S HG F ++ E VE E Y L+H L S G++
Sbjct: 161 APELIDDVAADSPHGPEFADQLREKVEDGRERGYQLVHGERELGSSGLS 209
>pdb|2FJI|1 Chain 1, Crystal Structure Of The C-Terminal Domain Of The Exocyst
Subunit Sec6p
pdb|2FJI|2 Chain 2, Crystal Structure Of The C-Terminal Domain Of The Exocyst
Subunit Sec6p
Length = 399
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 108 NLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVES 167
N EFF ++ E I ++ +V Y+D +DL++ + D+ + E+ ++V+
Sbjct: 307 NFTVMEFFMDLSCEPIDSILDIWQKYLEV-YWDSRIDLLVGILKCRKDVSSSERKKIVQQ 365
Query: 168 AAEMLY 173
A EML+
Sbjct: 366 ATEMLH 371
>pdb|3AOF|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Mannotriose Substrate
pdb|3AOF|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Mannotriose Substrate
Length = 317
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 138 YYDYALDLILDV-ESSHGDMFTEEQNELVESAAEMLYGL--IHVRYILTSK--GMAAMVK 192
Y DY L ++ + HG++ E+ NEL+E A +++ + H I T++ G++A+ K
Sbjct: 122 YKDYPETLFFEILNAPHGNLTPEKWNELLEEALKVIRSIDKKHTIIIGTAEWGGISALEK 181
Query: 193 FRV 195
V
Sbjct: 182 LSV 184
>pdb|3AMG|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Cellobiose Substrate, Mutant Form
pdb|3AMG|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Cellobiose Substrate, Mutant Form
Length = 317
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 138 YYDYALDLILDV-ESSHGDMFTEEQNELVESAAEMLYGL--IHVRYILTSK--GMAAMVK 192
Y DY L ++ + HG++ E+ NEL+E A +++ + H I T++ G++A+ K
Sbjct: 122 YKDYPETLFFEILNAPHGNLTPEKWNELLEEALKVIRSIDKKHTIIIGTAEWGGISALEK 181
Query: 193 FRV 195
V
Sbjct: 182 LSV 184
>pdb|3AZR|A Chain A, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellobiose
pdb|3AZR|B Chain B, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellobiose
pdb|3AZS|A Chain A, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Mannotriose
pdb|3AZS|B Chain B, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Mannotriose
pdb|3AZT|A Chain A, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
pdb|3AZT|B Chain B, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
pdb|3AZT|C Chain C, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
pdb|3AZT|D Chain D, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
Length = 317
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 138 YYDYALDLILDV-ESSHGDMFTEEQNELVESAAEMLYGL--IHVRYILTSK--GMAAMVK 192
Y DY L ++ HG++ E+ NEL+E A +++ + H I T++ G++A+ K
Sbjct: 122 YKDYPETLFFEILNEPHGNLTPEKWNELLEEALKVIRSIDKKHTIIIGTAEWGGISALEK 181
Query: 193 FRV 195
V
Sbjct: 182 LSV 184
>pdb|3MMU|A Chain A, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|B Chain B, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|C Chain C, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|D Chain D, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|E Chain E, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|F Chain F, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|G Chain G, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|H Chain H, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|A Chain A, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|B Chain B, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|C Chain C, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|D Chain D, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3AMC|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And DimerAU
pdb|3AMC|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And DimerAU
pdb|3AMD|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
pdb|3AMD|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
pdb|3AMD|C Chain C, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
pdb|3AMD|D Chain D, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
Length = 317
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 138 YYDYALDLILDV-ESSHGDMFTEEQNELVESAAEMLYGL--IHVRYILTSK--GMAAMVK 192
Y DY L ++ HG++ E+ NEL+E A +++ + H I T++ G++A+ K
Sbjct: 122 YKDYPETLFFEILNEPHGNLTPEKWNELLEEALKVIRSIDKKHTIIIGTAEWGGISALEK 181
Query: 193 FRV 195
V
Sbjct: 182 LSV 184
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,958,652
Number of Sequences: 62578
Number of extensions: 166403
Number of successful extensions: 334
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 328
Number of HSP's gapped (non-prelim): 11
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)