Query 029292
Match_columns 195
No_of_seqs 138 out of 329
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 10:34:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029292.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029292hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3092 Casein kinase II, beta 100.0 3.7E-44 8E-49 304.5 8.7 99 96-194 3-101 (216)
2 PTZ00396 Casein kinase II subu 100.0 3.7E-41 8.1E-46 293.7 10.3 98 97-194 18-115 (251)
3 PF01214 CK_II_beta: Casein ki 100.0 1.6E-40 3.5E-45 277.9 6.7 94 101-194 1-94 (184)
4 COG5041 SKB2 Casein kinase II, 100.0 2E-37 4.3E-42 265.7 6.0 92 101-194 25-116 (242)
5 PF15235 GRIN_C: G protein-reg 71.6 3.3 7.2E-05 34.3 2.4 23 12-34 56-78 (137)
6 PF11335 DUF3137: Protein of u 54.5 8.6 0.00019 30.3 1.8 19 175-193 62-80 (142)
7 COG0401 Uncharacterized homolo 36.8 7.7 0.00017 27.8 -0.9 13 172-184 43-55 (56)
8 PF14774 FAM177: FAM177 family 29.2 18 0.0004 29.1 0.0 49 96-148 56-108 (123)
9 PF06222 Phage_TAC: Phage tail 27.6 29 0.00064 28.5 0.9 34 143-182 79-112 (127)
10 PF10826 DUF2551: Protein of u 25.2 1.2E+02 0.0026 23.3 3.8 37 140-191 14-50 (83)
11 KOG2828 Acetyl-CoA hydrolase [ 23.0 25 0.00055 34.0 -0.3 17 176-192 401-417 (454)
12 KOG1773 Stress responsive prot 21.4 18 0.00039 26.3 -1.2 15 172-186 45-59 (63)
No 1
>KOG3092 consensus Casein kinase II, beta subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=3.7e-44 Score=304.51 Aligned_cols=99 Identities=67% Similarity=1.103 Sum_probs=92.9
Q ss_pred CCCCCchHHHHhCCCCCeeEEecCcchhccCCccCCCCCCCCCHHHHHHHHhCCCCCCCCCCchHhHHHHHHHHHHHHhh
Q 029292 96 DGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGL 175 (195)
Q Consensus 96 ~~ed~sWI~WFcsl~gNeffceVDedYI~D~FNL~GL~~~Vp~Y~eALd~ILD~e~~~ed~~~d~~~e~Ie~~A~~LYGL 175 (195)
++++.+||.|||+++||||||+||+|||+|+|||+||+.+||||++||++|||++++++...++++.+.||.+|++||||
T Consensus 3 ~see~sWI~wFc~~~GnEffceVdeeyIqD~FNltgL~~~Vp~y~~ald~ILD~~~~~~~e~~~~~~~~iE~aae~LYGL 82 (216)
T KOG3092|consen 3 SSEEVSWISWFCGLRGNEFFCEVDEEYIQDRFNLTGLSEQVPNYRQALDLILDLEPDDELEDNAEQSELIESAAEMLYGL 82 (216)
T ss_pred cccccchHHHHhcCCCCeeeEecCHHHhhhhhccccccccCchHHHHHHHhhcCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 44566799999999999999999999999999999999999999999999999999887777777779999999999999
Q ss_pred hhhhhhcCHHHHHHHHhhc
Q 029292 176 IHVRYILTSKGMAAMVKFR 194 (195)
Q Consensus 176 IHARYIlT~~GL~~M~E~~ 194 (195)
||||||+|.+||++|+||+
T Consensus 83 IHaRYIlT~~Gl~~M~eKy 101 (216)
T KOG3092|consen 83 IHARYILTNRGLAAMLEKY 101 (216)
T ss_pred hhheeeechHHHHHHHHHH
Confidence 9999999999999999986
No 2
>PTZ00396 Casein kinase II subunit beta; Provisional
Probab=100.00 E-value=3.7e-41 Score=293.75 Aligned_cols=98 Identities=48% Similarity=0.917 Sum_probs=90.3
Q ss_pred CCCCchHHHHhCCCCCeeEEecCcchhccCCccCCCCCCCCCHHHHHHHHhCCCCCCCCCCchHhHHHHHHHHHHHHhhh
Q 029292 97 GDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLI 176 (195)
Q Consensus 97 ~ed~sWI~WFcsl~gNeffceVDedYI~D~FNL~GL~~~Vp~Y~eALd~ILD~e~~~ed~~~d~~~e~Ie~~A~~LYGLI 176 (195)
.++.+||+|||+++||+|||+||++||+|+||||||+.+||||++||++|||.+++++...+++....++.+|++|||||
T Consensus 18 ~~~~sWI~wF~~~~gne~f~~Vd~dyI~D~FNl~GL~~~v~~y~~al~~Ild~~~~~~~~~~~~~~~~i~~~a~~LYGLI 97 (251)
T PTZ00396 18 EESMGWIEWFCSLKGHEFLCEVDEDFIRDEFNLYGLKSKFPFYNEALDMILDSEPPDDEDLEDEQFLEVYQEASDLYGLI 97 (251)
T ss_pred CCcCcHHHHHhCCCCCeeEEEeCHHHhcCcchhhCccccccCHHHHHHHHcCCCCCccccccchhHHHHHHHHHHHHHHH
Confidence 45668999999999999999999999999999999999999999999999999877654444566788999999999999
Q ss_pred hhhhhcCHHHHHHHHhhc
Q 029292 177 HVRYILTSKGMAAMVKFR 194 (195)
Q Consensus 177 HARYIlT~~GL~~M~E~~ 194 (195)
|||||+|++||++|++||
T Consensus 98 HARyI~T~~Gl~~M~eKY 115 (251)
T PTZ00396 98 HARFITTPKGLALMREKY 115 (251)
T ss_pred hHhHhcCHHHHHHHHHHh
Confidence 999999999999999997
No 3
>PF01214 CK_II_beta: Casein kinase II regulatory subunit; InterPro: IPR000704 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Casein kinase, a ubiquitous, well-conserved protein kinase involved in cell metabolism and differentiation, is characterised by its preference for Ser or Thr in acidic stretches of amino acids. The enzyme is a tetramer of 2 alpha- and 2 beta-subunits [, ]. However, some species (e.g., mammals) possess 2 related forms of the alpha-subunit (alpha and alpha'), while others (e.g., fungi) possess 2 related beta-subunits (beta and beta') []. The alpha-subunit is the catalytic unit and contains regions characteristic of serine/threonine protein kinases. The beta-subunit is believed to be regulatory, possessing an N-terminal auto-phosphorylation site, an internal acidic domain, and a potential metal-binding motif []. The beta subunit is a highly conserved protein of about 25kDa that contains, in its central section, a cysteine-rich motif, CX(n)C, that could be involved in binding a metal such as zinc []. The mammalian beta-subunit gene promoter shares common features with those of other mammalian protein kinases and is closely related to the promoter of the regulatory subunit of cAMP-dependent protein kinase [].; GO: 0019887 protein kinase regulator activity, 0005956 protein kinase CK2 complex; PDB: 2R6M_B 1RQF_K 1DS5_G 1QF8_B 3EED_A 4DGL_A 1JWH_D.
Probab=100.00 E-value=1.6e-40 Score=277.87 Aligned_cols=94 Identities=60% Similarity=1.095 Sum_probs=79.5
Q ss_pred chHHHHhCCCCCeeEEecCcchhccCCccCCCCCCCCCHHHHHHHHhCCCCCCCCCCchHhHHHHHHHHHHHHhhhhhhh
Q 029292 101 SWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY 180 (195)
Q Consensus 101 sWI~WFcsl~gNeffceVDedYI~D~FNL~GL~~~Vp~Y~eALd~ILD~e~~~ed~~~d~~~e~Ie~~A~~LYGLIHARY 180 (195)
+||+|||+++||+|||+||+|||+|+|||+||+.+||+|++||++|||.++++++..++...+.++++|++|||||||||
T Consensus 1 sWI~~F~~~~~~~~f~~Vd~dyI~D~FNl~GL~~~v~~y~~al~~Ild~~~~~~~~~~~~~~~~i~~~a~~LYGLIHaRy 80 (184)
T PF01214_consen 1 SWIDWFCSLKGNEFFCEVDEDYIEDSFNLYGLSSQVPNYDEALDMILDKEPDEDEESDDESDDEIEKSAEMLYGLIHARY 80 (184)
T ss_dssp -HHHHHHHSTTTTT-----HHHHHSGGGGTTGGGTSTTHHHHHHHHTT----TTTTTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHhCCCCCeEEEEeCHHHHhCcchhcChhhccccHHHHHHHHcCCCcccchhccchhHHHHHHHHHHHHhhhHHHH
Confidence 69999999999999999999999999999999999999999999999998876555556678899999999999999999
Q ss_pred hcCHHHHHHHHhhc
Q 029292 181 ILTSKGMAAMVKFR 194 (195)
Q Consensus 181 IlT~~GL~~M~E~~ 194 (195)
|+|++||++|++|+
T Consensus 81 I~T~~Gl~~m~eKy 94 (184)
T PF01214_consen 81 ILTPRGLEQMKEKY 94 (184)
T ss_dssp TTSHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHhh
Confidence 99999999999986
No 4
>COG5041 SKB2 Casein kinase II, beta subunit [Signal transduction mechanisms / Cell division and chromosome partitioning / Transcription]
Probab=100.00 E-value=2e-37 Score=265.74 Aligned_cols=92 Identities=49% Similarity=0.978 Sum_probs=84.3
Q ss_pred chHHHHhCCCCCeeEEecCcchhccCCccCCCCCCCCCHHHHHHHHhCCCCCCCCCCchHhHHHHHHHHHHHHhhhhhhh
Q 029292 101 SWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY 180 (195)
Q Consensus 101 sWI~WFcsl~gNeffceVDedYI~D~FNL~GL~~~Vp~Y~eALd~ILD~e~~~ed~~~d~~~e~Ie~~A~~LYGLIHARY 180 (195)
.||+|||+++||+|||+||++||+|.|||+||+..||+|.+||++|||...+. .+.+.+-+.||.+|+.|||||||||
T Consensus 25 ~Wi~~F~~rkg~eyfc~V~~efIeDrFNltgL~~~Vp~y~~~ldlILD~~~~~--~~e~~~~d~iE~sa~~LYgLIHaRy 102 (242)
T COG5041 25 EWIDWFCSRKGNEYFCEVPEEFIEDRFNLTGLSREVPHYSEVLDLILDKLAPS--NLENDEVDIIEESARQLYGLIHARY 102 (242)
T ss_pred HHHHHHHcCCCCeeeeeCCHHHHHhhhhccchhhccchHHHHHHHHHhccCCc--chhhhhhHHHHHHHHHHHHHHHhhh
Confidence 79999999999999999999999999999999999999999999999987553 2333345789999999999999999
Q ss_pred hcCHHHHHHHHhhc
Q 029292 181 ILTSKGMAAMVKFR 194 (195)
Q Consensus 181 IlT~~GL~~M~E~~ 194 (195)
|+|..||++|+||+
T Consensus 103 IiT~~GL~~m~eKy 116 (242)
T COG5041 103 IITKSGLQAMLEKY 116 (242)
T ss_pred eeeHHHHHHHHHHH
Confidence 99999999999986
No 5
>PF15235 GRIN_C: G protein-regulated inducer of neurite outgrowth C-terminus
Probab=71.61 E-value=3.3 Score=34.27 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=21.2
Q ss_pred cccccCccchhhhHHHHHhhhhc
Q 029292 12 SEIVAGPLDRKRINDALDKHLEK 34 (195)
Q Consensus 12 ~~~~~~~~~~~r~~~~~~~~~~~ 34 (195)
=||+|..+|=.-+..|+.||||+
T Consensus 56 WEVYGAs~DpEvLG~AIQkHLE~ 78 (137)
T PF15235_consen 56 WEVYGASVDPEVLGMAIQKHLER 78 (137)
T ss_pred EEEeccccCHHHHHHHHHHHHHH
Confidence 37899999999999999999997
No 6
>PF11335 DUF3137: Protein of unknown function (DUF3137) ; InterPro: IPR021484 This bacterial family of proteins has no known function.
Probab=54.48 E-value=8.6 Score=30.27 Aligned_cols=19 Identities=32% Similarity=0.558 Sum_probs=15.9
Q ss_pred hhhhhhhcCHHHHHHHHhh
Q 029292 175 LIHVRYILTSKGMAAMVKF 193 (195)
Q Consensus 175 LIHARYIlT~~GL~~M~E~ 193 (195)
-+.|||||||.=|+.+.+.
T Consensus 62 ~~~AryiLtP~~mE~L~~l 80 (142)
T PF11335_consen 62 QVEARYILTPSFMERLLEL 80 (142)
T ss_pred HHHHHHhCCHHHHHHHHHH
Confidence 4678999999999888764
No 7
>COG0401 Uncharacterized homolog of Blt101 [Function unknown]
Probab=36.79 E-value=7.7 Score=27.76 Aligned_cols=13 Identities=31% Similarity=0.749 Sum_probs=10.9
Q ss_pred HHhhhhhhhhcCH
Q 029292 172 LYGLIHVRYILTS 184 (195)
Q Consensus 172 LYGLIHARYIlT~ 184 (195)
+=|+|||=||++.
T Consensus 43 ~PGiiHA~yvi~~ 55 (56)
T COG0401 43 IPGIIHALYVILR 55 (56)
T ss_pred hhhhHhheEEEEe
Confidence 5589999999874
No 8
>PF14774 FAM177: FAM177 family
Probab=29.23 E-value=18 Score=29.15 Aligned_cols=49 Identities=24% Similarity=0.609 Sum_probs=32.9
Q ss_pred CCCCCchHHHHh---CCCCCeeEEecCcchhccCC-ccCCCCCCCCCHHHHHHHHhC
Q 029292 96 DGDDTSWISWFC---NLRGNEFFCEVDDEYIQDDF-NLCGLSSQVPYYDYALDLILD 148 (195)
Q Consensus 96 ~~ed~sWI~WFc---sl~gNeffceVDedYI~D~F-NL~GL~~~Vp~Y~eALd~ILD 148 (195)
+....+|..||- ...++..|.-+ ||+-..| ++.||.. |.|+.||+-.--
T Consensus 56 dp~~l~w~~~~~~~~~~~~~~~l~~~--d~~Ge~lA~~fGit~--~KYqy~idey~r 108 (123)
T PF14774_consen 56 DPSKLTWGPWLWFWAWRVGTKSLSGC--DYLGEKLASFFGITS--PKYQYAIDEYYR 108 (123)
T ss_pred CcccCCcHHHHHHHHHHHHHhHhhHH--hhhhhHHHHHhCCCc--hHHHHHHHHHHH
Confidence 445668998774 33455555333 5766666 6789976 899999986543
No 9
>PF06222 Phage_TAC: Phage tail assembly chaperone; InterPro: IPR010411 This entry is represented by Bacteriophage HK97, Gp13 and Gp14. These are two overlapping reading frames []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. These proteins include several putative tail assembly chaperones encoded by phages of Gram-negative bacteria.; PDB: 2OB9_A.
Probab=27.59 E-value=29 Score=28.46 Aligned_cols=34 Identities=29% Similarity=0.695 Sum_probs=17.8
Q ss_pred HHHHhCCCCCCCCCCchHhHHHHHHHHHHHHhhhhhhhhc
Q 029292 143 LDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYIL 182 (195)
Q Consensus 143 Ld~ILD~e~~~ed~~~d~~~e~Ie~~A~~LYGLIHARYIl 182 (195)
+++++|... .-.|.+++.+.+ ...||..|+|-+-
T Consensus 79 idVL~dE~~--~rVFsd~D~~~V----~~~YGPVHaRLl~ 112 (127)
T PF06222_consen 79 IDVLLDEDG--QRVFSDDDAEQV----AAIYGPVHARLLR 112 (127)
T ss_dssp HHHEE-TTS---BSS-GGGHHHH----HCC--HHHHHHHH
T ss_pred hHHHhcCCC--CcccCcchHHHH----HHHhchHHHHHHH
Confidence 455566432 245666555544 3489999999763
No 10
>PF10826 DUF2551: Protein of unknown function (DUF2551) ; InterPro: IPR020501 This entry contains proteins with no known function.
Probab=25.22 E-value=1.2e+02 Score=23.29 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=27.6
Q ss_pred HHHHHHHhCCCCCCCCCCchHhHHHHHHHHHHHHhhhhhhhhcCHHHHHHHH
Q 029292 140 DYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMV 191 (195)
Q Consensus 140 ~eALd~ILD~e~~~ed~~~d~~~e~Ie~~A~~LYGLIHARYIlT~~GL~~M~ 191 (195)
+..|.+.|...+- + +..||-.+..+|=+|.+|..+|.
T Consensus 14 r~vL~~fl~~~~~-----T----------~~di~e~L~~~f~vs~~~VasMV 50 (83)
T PF10826_consen 14 RAVLKLFLKGKKF-----T----------TDDIYERLKEKFDVSYRGVASMV 50 (83)
T ss_pred HHHHHHHHhCCCe-----e----------HHHHHHHHHHHcCchHHHHHHHH
Confidence 4678888875321 1 34588888999999999999996
No 11
>KOG2828 consensus Acetyl-CoA hydrolase [Energy production and conversion]
Probab=22.97 E-value=25 Score=33.97 Aligned_cols=17 Identities=29% Similarity=0.642 Sum_probs=14.7
Q ss_pred hhhhhhcCHHHHHHHHh
Q 029292 176 IHVRYILTSKGMAAMVK 192 (195)
Q Consensus 176 IHARYIlT~~GL~~M~E 192 (195)
-|++||+|+.||+.+.-
T Consensus 401 ah~~y~VTEhGiA~L~G 417 (454)
T KOG2828|consen 401 AHLDYLVTEHGIADLWG 417 (454)
T ss_pred cceeEEEecccHHHHhC
Confidence 59999999999998753
No 12
>KOG1773 consensus Stress responsive protein [General function prediction only]
Probab=21.37 E-value=18 Score=26.34 Aligned_cols=15 Identities=40% Similarity=0.793 Sum_probs=11.8
Q ss_pred HHhhhhhhhhcCHHH
Q 029292 172 LYGLIHVRYILTSKG 186 (195)
Q Consensus 172 LYGLIHARYIlT~~G 186 (195)
+=|+|||=|+++.++
T Consensus 45 iPgiIhA~yii~~~~ 59 (63)
T KOG1773|consen 45 IPGIIHAIYIIFFRG 59 (63)
T ss_pred hHHHHhhEEEEEEec
Confidence 458999999987554
Done!