Query 029292
Match_columns 195
No_of_seqs 138 out of 329
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 17:14:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029292.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029292hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qf8_A Casein kinase II; casei 100.0 6.6E-44 2.3E-48 297.5 7.0 99 96-194 3-101 (182)
2 4dgl_A Casein kinase II subuni 100.0 7.7E-44 2.6E-48 303.7 7.4 99 96-194 3-101 (215)
3 4a18_O RPL28, ribosomal protei 29.2 27 0.00093 27.3 2.2 32 103-134 4-36 (134)
4 2kep_A General secretion pathw 26.2 37 0.0013 25.4 2.3 28 164-192 18-45 (110)
5 2i9n_A MHB4A peptide; beta-hai 22.1 29 0.001 21.2 0.9 21 5-30 12-32 (33)
6 3iz5_b 60S ribosomal protein L 17.7 27 0.00092 27.7 0.0 32 103-134 8-45 (147)
7 2i9o_A MHB8A peptide; beta-hai 17.5 52 0.0018 20.5 1.3 11 20-30 26-36 (37)
8 1t92_A General secretion pathw 10.2 44 0.0015 25.4 -0.7 29 164-193 18-46 (116)
9 3b23_C Variegin; hydrolase-hyd 10.0 53 0.0018 20.2 -0.3 16 110-126 16-31 (32)
10 3boe_A Cadmium-specific carbon 9.4 1.3E+02 0.0044 25.3 1.7 21 172-192 61-81 (210)
No 1
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=100.00 E-value=6.6e-44 Score=297.50 Aligned_cols=99 Identities=60% Similarity=1.062 Sum_probs=85.3
Q ss_pred CCCCCchHHHHhCCCCCeeEEecCcchhccCCccCCCCCCCCCHHHHHHHHhCCCCCCCCCCchHhHHHHHHHHHHHHhh
Q 029292 96 DGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGL 175 (195)
Q Consensus 96 ~~ed~sWI~WFcsl~gNeffceVDedYI~D~FNL~GL~~~Vp~Y~eALd~ILD~e~~~ed~~~d~~~e~Ie~~A~~LYGL 175 (195)
++++.+||+|||+++||+|||+||+|||+|+|||+||+.+||||++||++|||.+++++...+.++.+.++++|++||||
T Consensus 3 ~~~~~sWI~wF~~~~gneffceVd~dyI~D~FNL~GL~~~vp~y~~aLd~Ild~~~~~~~~~~~~~~~~ie~~a~~LYGL 82 (182)
T 1qf8_A 3 SSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGL 82 (182)
T ss_dssp ----CCHHHHHHHSTTCTTCCCCCHHHHHSGGGGTTGGGTSTTHHHHHHHHTTCCCC------CHHHHHHHHHHHHHHHH
T ss_pred CCccCcHHHHHhCCCCCeEEEEeCHHHhcCcchhhCccccccCHHHHHHHHhCCCCccccccchhhhHHHHHHHHHHhch
Confidence 44667899999999999999999999999999999999999999999999999987665444455678899999999999
Q ss_pred hhhhhhcCHHHHHHHHhhc
Q 029292 176 IHVRYILTSKGMAAMVKFR 194 (195)
Q Consensus 176 IHARYIlT~~GL~~M~E~~ 194 (195)
||||||+|++||++|++||
T Consensus 83 IHaRyIlT~~Gl~~M~eKy 101 (182)
T 1qf8_A 83 IHARYILTNRGIAQMLEKY 101 (182)
T ss_dssp HHHHHTTSHHHHHHHHHHH
T ss_pred hhhhhcccHHHHHHHHHhh
Confidence 9999999999999999986
No 2
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*
Probab=100.00 E-value=7.7e-44 Score=303.71 Aligned_cols=99 Identities=60% Similarity=1.062 Sum_probs=82.7
Q ss_pred CCCCCchHHHHhCCCCCeeEEecCcchhccCCccCCCCCCCCCHHHHHHHHhCCCCCCCCCCchHhHHHHHHHHHHHHhh
Q 029292 96 DGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGL 175 (195)
Q Consensus 96 ~~ed~sWI~WFcsl~gNeffceVDedYI~D~FNL~GL~~~Vp~Y~eALd~ILD~e~~~ed~~~d~~~e~Ie~~A~~LYGL 175 (195)
++++.+||+|||+++||+|||+||+|||+|+|||+||+.+||+|++||++|||.+++++...+..+.+.|+++|++||||
T Consensus 3 ~s~~~sWI~wFc~~~gneffceVd~dyI~D~FNL~GL~~~Vp~y~~aLd~Ild~~~~~~~~~~~~~~~~ie~~A~~LYGL 82 (215)
T 4dgl_A 3 SSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGL 82 (215)
T ss_dssp -----CHHHHHHTSTTCTTCCCCCHHHHHSTTTTTTGGGTSSSHHHHHHHHTTC--------CTTHHHHHHHHHHHHHHH
T ss_pred CcccCcHHHHHhCCCCCeEEEEeCHHHhcCcccccCchhccccHHHHHHHHcCCCCcchhcccchhHHHHHHHHHHHhhh
Confidence 44667999999999999999999999999999999999999999999999999987654444455677899999999999
Q ss_pred hhhhhhcCHHHHHHHHhhc
Q 029292 176 IHVRYILTSKGMAAMVKFR 194 (195)
Q Consensus 176 IHARYIlT~~GL~~M~E~~ 194 (195)
||||||+|++||++|+|||
T Consensus 83 IHARYIlT~~Gl~~M~eKY 101 (215)
T 4dgl_A 83 IHARYILTNRGIAQMLEKY 101 (215)
T ss_dssp HHHHHTTSHHHHHHHHHHH
T ss_pred hhHhheecHHHHHHHHHHH
Confidence 9999999999999999986
No 3
>4a18_O RPL28, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_O 4a1b_O 4a1d_O
Probab=29.25 E-value=27 Score=27.34 Aligned_cols=32 Identities=19% Similarity=0.449 Sum_probs=27.3
Q ss_pred HHHHhCCCCCeeEEecC-cchhccCCccCCCCC
Q 029292 103 ISWFCNLRGNEFFCEVD-DEYIQDDFNLCGLSS 134 (195)
Q Consensus 103 I~WFcsl~gNeffceVD-edYI~D~FNL~GL~~ 134 (195)
+.|-|-...|-|++.=. .-|=.|++||+|+..
T Consensus 4 L~W~ivrnnnsFLvKr~g~~FS~eP~NL~n~~S 36 (134)
T 4a18_O 4 LVWEIVKNNNAFLVKNNGVAFTTDPFSVTGRNT 36 (134)
T ss_dssp HHHHHHTTTCTTEEEETTEEEECCTTCSSSBCS
T ss_pred eeehhhcCcceEEEeeCCccccCCCCCccceec
Confidence 67899888999998754 679999999999965
No 4
>2kep_A General secretion pathway protein G; methylation, transport, transport protein; NMR {Pseudomonas aeruginosa}
Probab=26.16 E-value=37 Score=25.42 Aligned_cols=28 Identities=36% Similarity=0.475 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhhhhhhhcCHHHHHHHHh
Q 029292 164 LVESAAEMLYGLIHVRYILTSKGMAAMVK 192 (195)
Q Consensus 164 ~Ie~~A~~LYGLIHARYIlT~~GL~~M~E 192 (195)
.|+ .|..+|-|=|-||=.|..||+++.+
T Consensus 18 ~l~-~Al~~Y~lD~G~YPtt~qgL~aLv~ 45 (110)
T 2kep_A 18 AIA-AALDMYKLDNFAYPSTQQGLEALVK 45 (110)
T ss_dssp HHH-HHHHHHHHHTSSCCCTTHHHHHHHS
T ss_pred HHH-HHHHHHHHHhCCCCCcHHHHHHHHh
Confidence 344 5777999999999999999999876
No 5
>2i9n_A MHB4A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=22.09 E-value=29 Score=21.19 Aligned_cols=21 Identities=48% Similarity=0.748 Sum_probs=15.1
Q ss_pred CCCCCCccccccCccchhhhHHHHHh
Q 029292 5 RGGGASKSEIVAGPLDRKRINDALDK 30 (195)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~r~~~~~~~ 30 (195)
.|+|++..|.. -|||.+++.|
T Consensus 12 eggggsaaeay-----akriaeamak 32 (33)
T 2i9n_A 12 EGGGGSAAEAY-----AKRIAEAMAK 32 (33)
T ss_dssp CSSCCCSTHHH-----HHHHHHHHCC
T ss_pred ecCCchHHHHH-----HHHHHHHHhC
Confidence 36777776743 7999998764
No 6
>3iz5_b 60S ribosomal protein L28 (L28E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_b
Probab=17.68 E-value=27 Score=27.67 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHhCCCCCeeEEecC------cchhccCCccCCCCC
Q 029292 103 ISWFCNLRGNEFFCEVD------DEYIQDDFNLCGLSS 134 (195)
Q Consensus 103 I~WFcsl~gNeffceVD------edYI~D~FNL~GL~~ 134 (195)
+.|-|-...|-|++.-. .-|=+|++||+|+..
T Consensus 8 L~W~iir~nn~FlvKr~~~~~~~~~FSrep~NL~n~~S 45 (147)
T 3iz5_b 8 LIWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHS 45 (147)
T ss_dssp --------------------------------------
T ss_pred cchhhccCcceEEEEecCCCCccceecCCCCCcccccc
Confidence 56778778888888765 359999999999964
No 7
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=17.52 E-value=52 Score=20.50 Aligned_cols=11 Identities=45% Similarity=0.576 Sum_probs=8.7
Q ss_pred chhhhHHHHHh
Q 029292 20 DRKRINDALDK 30 (195)
Q Consensus 20 ~~~r~~~~~~~ 30 (195)
--|||.+++.|
T Consensus 26 yakriaeamak 36 (37)
T 2i9o_A 26 YAKRIAEAMAK 36 (37)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 37999998864
No 8
>1t92_A General secretion pathway protein G; domain-swapping, zinc, pseudopilin, protein transport; 1.60A {Klebsiella pneumoniae} SCOP: d.24.1.3
Probab=10.19 E-value=44 Score=25.36 Aligned_cols=29 Identities=34% Similarity=0.456 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhhhhhhhcCHHHHHHHHhh
Q 029292 164 LVESAAEMLYGLIHVRYILTSKGMAAMVKF 193 (195)
Q Consensus 164 ~Ie~~A~~LYGLIHARYIlT~~GL~~M~E~ 193 (195)
.|+ .|..+|-|=+-||=.|..||+++.++
T Consensus 18 ~l~-~ALd~Y~lD~G~YPtt~qgL~aLv~~ 46 (116)
T 1t92_A 18 ALE-GALDMYKLDNSRYPTTEQGLQALVSA 46 (116)
T ss_dssp HHH-HHHHHHHHHHSSCCCTTTCGGGGTSC
T ss_pred HHH-HHHHHHHHHhCCCCCcHHHHHHHHhC
Confidence 444 57779999999999999999988663
No 9
>3b23_C Variegin; hydrolase-hydrolase inhibitor complex; 2.40A {Amblyomma variegatum}
Probab=10.01 E-value=53 Score=20.24 Aligned_cols=16 Identities=25% Similarity=0.599 Sum_probs=10.5
Q ss_pred CCCeeEEecCcchhccC
Q 029292 110 RGNEFFCEVDDEYIQDD 126 (195)
Q Consensus 110 ~gNeffceVDedYI~D~ 126 (195)
+++.| -+||++||.|.
T Consensus 16 p~gDF-E~IP~~~~~~~ 31 (32)
T 3b23_C 16 PPFDF-EAIPEEYLDDE 31 (32)
T ss_pred CCCCh-hhCCHhhhccc
Confidence 34444 37888888774
No 10
>3boe_A Cadmium-specific carbonic anhydrase; marine diatom, cadmium-bound, acetate LI lyase; 1.40A {Thalassiosira weissflogii} SCOP: c.154.1.1 PDB: 3boc_A 3bob_A 3boj_A 3boh_A
Probab=9.37 E-value=1.3e+02 Score=25.27 Aligned_cols=21 Identities=24% Similarity=0.553 Sum_probs=19.2
Q ss_pred HHhhhhhhhhcCHHHHHHHHh
Q 029292 172 LYGLIHVRYILTSKGMAAMVK 192 (195)
Q Consensus 172 LYGLIHARYIlT~~GL~~M~E 192 (195)
+|++-|-|=+.|-+||+++..
T Consensus 61 vYaIA~nRg~~t~~~L~~i~~ 81 (210)
T 3boe_A 61 IYAIAHNRGVTSIEGLKQITK 81 (210)
T ss_dssp THHHHHHHTCCSHHHHHHHHH
T ss_pred eEEEEeccCcccHHHHHHHHH
Confidence 699999999999999999864
Done!