Query 029294
Match_columns 195
No_of_seqs 128 out of 290
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 10:36:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029294.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029294hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01958 HPS_like HPS_like: Hyd 100.0 6.8E-36 1.5E-40 225.0 1.8 83 110-193 2-85 (85)
2 PF14547 Hydrophob_seed: Hydro 100.0 7.8E-35 1.7E-39 218.7 3.4 83 111-194 1-85 (85)
3 PF14368 LTP_2: Probable lipid 96.6 0.00027 5.8E-09 50.9 -1.3 57 135-193 39-96 (96)
4 smart00499 AAI Plant lipid tra 96.6 0.00083 1.8E-08 45.4 1.2 74 112-193 1-79 (79)
5 cd01959 nsLTP2 nsLTP2: Non-spe 96.3 0.0012 2.5E-08 47.6 0.2 63 116-189 3-65 (66)
6 cd04660 nsLTP_like nsLTP_like: 96.1 0.0021 4.6E-08 45.9 0.8 70 115-193 4-73 (73)
7 PF00234 Tryp_alpha_amyl: Prot 92.5 0.0085 1.8E-07 43.1 -3.3 66 117-193 13-90 (90)
8 cd00010 AAI_LTSS AAI_LTSS: Alp 92.1 0.065 1.4E-06 36.4 0.9 42 120-167 2-43 (63)
9 cd01960 nsLTP1 nsLTP1: Non-spe 87.4 0.19 4.2E-06 36.7 0.2 68 116-188 7-79 (89)
10 PF07172 GRP: Glycine rich pro 32.9 38 0.00083 26.0 2.3 9 1-10 1-9 (95)
No 1
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=100.00 E-value=6.8e-36 Score=224.96 Aligned_cols=83 Identities=53% Similarity=1.149 Sum_probs=80.9
Q ss_pred CCCCccccccchhhhhhhcccccccCCCCCCCcchhhhccccccccchhhhhhcccccceecccccccchhhc-cCCcCC
Q 029294 110 ATCPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLLNLNIYLPLALQLLVT-CGKTPP 188 (195)
Q Consensus 110 ~tCP~d~LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dldAAvCLCtAIKAnvLGInl~iPv~L~lLLn-CGK~~P 188 (195)
++||||++|||+|+|||| ++++.+|++++++||++|+||+|+|||+|||||||+|+|||++|+|+++++++| |||++|
T Consensus 2 ~~CP~dalkLgvCanvL~-l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan~lgi~~~~pv~l~llln~CGk~~P 80 (85)
T cd01958 2 PTCPRDALKLGVCANVLG-LSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKANILGISINIPVALSLLLNSCGRNVP 80 (85)
T ss_pred CCCCcchHHhchhHhhhh-ccccccCCCccchHHHHHcCchhhheeeeeeeeeeccccCcccccChhHHHHHHHHcCcCC
Confidence 689999999999999995 889999999999999999999999999999999999999999999999999999 999999
Q ss_pred CCCcc
Q 029294 189 AGFTC 193 (195)
Q Consensus 189 ~GF~C 193 (195)
+||+|
T Consensus 81 ~gf~C 85 (85)
T cd01958 81 PGFTC 85 (85)
T ss_pred CCCcC
Confidence 99998
No 2
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=100.00 E-value=7.8e-35 Score=218.66 Aligned_cols=83 Identities=53% Similarity=1.151 Sum_probs=81.1
Q ss_pred CCCccccccchhhhhhhcccccccCCCCCCCcchhhhccccccccchhhhhhcccccc-eecccccccchhhc-cCCcCC
Q 029294 111 TCPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLLN-LNIYLPLALQLLVT-CGKTPP 188 (195)
Q Consensus 111 tCP~d~LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dldAAvCLCtAIKAnvLG-Inl~iPv~L~lLLn-CGK~~P 188 (195)
+||+|++|||+|+||| |++++.+|++.+++||++|+||+|+|||+|||+|+|+|+|| |++|+|+++++++| |||++|
T Consensus 1 ~CP~d~lkLgvC~~vL-~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CGk~~p 79 (85)
T PF14547_consen 1 TCPRDALKLGVCANVL-GLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKANVLGLINVNIPVALNLLLNACGKTVP 79 (85)
T ss_pred CCCCcchhhhhhhhhh-hhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhhcccccccccccHHHHHHHHhCCcCc
Confidence 6999999999999999 69999999999999999999999999999999999999999 89999999999999 999999
Q ss_pred CCCccc
Q 029294 189 AGFTCT 194 (195)
Q Consensus 189 ~GF~C~ 194 (195)
+||+|+
T Consensus 80 ~gf~C~ 85 (85)
T PF14547_consen 80 SGFTCP 85 (85)
T ss_pred CCCcCC
Confidence 999996
No 3
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=96.64 E-value=0.00027 Score=50.94 Aligned_cols=57 Identities=30% Similarity=0.606 Sum_probs=33.5
Q ss_pred CCCCCCCcchhhhccccccccchhhhhhcccc-cceecccccccchhhccCCcCCCCCcc
Q 029294 135 GDPVVNQCCPVLQGLVELEAAVCLCTTLKLKL-LNLNIYLPLALQLLVTCGKTPPAGFTC 193 (195)
Q Consensus 135 G~p~~~~CCsLI~GL~dldAAvCLCtAIKAnv-LGInl~iPv~L~lLLnCGK~~P~GF~C 193 (195)
+..+.+.||.-++.+.+ ....|||..++... .++++|...++++--.||...+. ++|
T Consensus 39 ~~~Ps~~CC~~l~~~~~-~~~~ClC~~~~~~~~~~~~in~~~a~~Lp~~Cg~~~~~-~~C 96 (96)
T PF14368_consen 39 GPAPSAACCSALKSVVQ-ADPPCLCQLLNSPGAPGFGINVTRALALPAACGVPVPP-SKC 96 (96)
T ss_dssp -----HHHHHHHCC-----HCCHHHCCCC-CCHCHHCCTCHHHHHHHHHCTSS-S-----
T ss_pred CCCCCHHHHHHHHHhcc-CCCCCHHHhcCccccccCCcCHHHHHHHHHHcCCCCCC-CCC
Confidence 34566789999999977 44899999999876 55666666666555449999998 887
No 4
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=96.64 E-value=0.00083 Score=45.39 Aligned_cols=74 Identities=34% Similarity=0.654 Sum_probs=47.7
Q ss_pred CCccccccchhhhhhhcccccccCCCCCCCcchhhhccccccccchhhhhhcccccceec----ccccccchhhc-cCCc
Q 029294 112 CPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLLNLNI----YLPLALQLLVT-CGKT 186 (195)
Q Consensus 112 CP~d~LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dldAAvCLCtAIKAnvLGInl----~iPv~L~lLLn-CGK~ 186 (195)
|.....++..|.+.+.+- .....+.++||..++++. .+.|+|.+++..+.++.. +... ...|-+ ||..
T Consensus 1 C~~~~~~~~~c~~~~~~~---~~~~~p~~~CC~~l~~~~---~~~C~C~~~~~~~~~~~~~~~~~~~~-a~~lp~~C~~~ 73 (79)
T smart00499 1 CGQVLLQLAPCLSYLTGG---SPGAPPSQQCCSQLRGLN---SAQCRCLALRAAVLGILEIPGVNAQN-AASLPSACGVP 73 (79)
T ss_pred ChhhhhhHHhhHHHHcCC---CCCCCCchHHHHHHHHhc---ccCCcchhhhcccccccchhhhhHHH-HHhhHHhcCCC
Confidence 344445666788776311 012345688999999987 778999999987766532 3333 333445 9998
Q ss_pred CCCCCcc
Q 029294 187 PPAGFTC 193 (195)
Q Consensus 187 ~P~GF~C 193 (195)
.+. +.|
T Consensus 74 ~~~-~~C 79 (79)
T smart00499 74 PPY-TDC 79 (79)
T ss_pred CCC-CCC
Confidence 775 544
No 5
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=96.28 E-value=0.0012 Score=47.58 Aligned_cols=63 Identities=29% Similarity=0.546 Sum_probs=46.6
Q ss_pred ccccchhhhhhhcccccccCCCCCCCcchhhhccccccccchhhhhhcccccceecccccccchhhccCCcCCC
Q 029294 116 TLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLLNLNIYLPLALQLLVTCGKTPPA 189 (195)
Q Consensus 116 ~LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dldAAvCLCtAIKAnvLGInl~iPv~L~lLLnCGK~~P~ 189 (195)
..+|..|...+. .|.++.++||.-|+. +.-|||.-+|...|+.-+|.+.+.++.-.||..+|.
T Consensus 3 ~~~L~~C~~ai~------~~~~Ps~~CC~~Lk~-----~~~CLC~y~~~p~l~~~i~~~~A~~l~~~Cgv~~P~ 65 (66)
T cd01959 3 PTQLSPCLPAIL------GGSPPSAACCAKLKE-----QQSCLCQYAKNPSLKQYVNSPNARKVLAACGVPYPN 65 (66)
T ss_pred hhhcccCHHHHh------CCCCCCHHHHHHHhc-----CCCCeeeeecCccHHhhcCcHHHHHHHHHcCCCCCC
Confidence 357888998763 356778899999997 237999999876665446666667665559998863
No 6
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=96.09 E-value=0.0021 Score=45.94 Aligned_cols=70 Identities=27% Similarity=0.502 Sum_probs=45.4
Q ss_pred cccccchhhhhhhcccccccCCCCCCCcchhhhccccccccchhhhhhcccccceecccccccchhhccCCcCCCCCcc
Q 029294 115 DTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLLNLNIYLPLALQLLVTCGKTPPAGFTC 193 (195)
Q Consensus 115 d~LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dldAAvCLCtAIKAnvLGInl~iPv~L~lLLnCGK~~P~GF~C 193 (195)
|..+|..|...+.+ ..-...+.+.||+-|+.+ |. .|+|..++++.+.+ +|...+.+|--.||..+|. |+|
T Consensus 4 ~~~~L~~C~~yl~~---~~~~~~Ps~~CC~~vk~~---~~-~C~C~~~~~~~~~~-i~~~~a~~Lp~~Cgv~~p~-~~C 73 (73)
T cd04660 4 DLDLLAECQPYVTG---PNPPPPPSRECCAALRRA---DL-PCLCRYKTSLVLQI-IDPDKAVYLPAKCGLPLPP-SSC 73 (73)
T ss_pred CHHHHHHHHHHHcC---CCCCCCCCHHHHHHHHcC---Cc-CCEeeccCCCcccc-cCHHHHHHHHHHcCCCCCC-CCC
Confidence 33467788887631 000123456799999984 32 39999999876542 5555444433349999999 887
No 7
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=92.48 E-value=0.0085 Score=43.11 Aligned_cols=66 Identities=29% Similarity=0.615 Sum_probs=44.9
Q ss_pred cccchhhhhhhcccccccCCCCCCCcchhhhccccccccchhhhhhcccccce-----------ecccccccchhhc-cC
Q 029294 117 LKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLLNL-----------NIYLPLALQLLVT-CG 184 (195)
Q Consensus 117 LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dldAAvCLCtAIKAnvLGI-----------nl~iPv~L~lLLn-CG 184 (195)
..|..|...+.+- - ..+.++||.-|+.| ...|.|.+||..+.++ .++.-.+ +.|-+ ||
T Consensus 13 ~~l~~c~~~~~~~----~-~~~~~~CC~~L~~l----~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a-~~LP~~C~ 82 (90)
T PF00234_consen 13 VRLSPCLPYLQGG----C-QQPSQQCCQQLRQL----DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRA-QNLPSMCN 82 (90)
T ss_dssp SHHHGGHHHHTTS----S-SHHHHHHHHHHHHH----HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHH-HHHHHHTT
T ss_pred ccccccHHHHhcc----c-ccchHHHhHHHHHH----hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHH-HHHHHHCC
Confidence 4577788776421 1 12356799999998 8899999999888763 3443333 34445 99
Q ss_pred CcCCCCCcc
Q 029294 185 KTPPAGFTC 193 (195)
Q Consensus 185 K~~P~GF~C 193 (195)
..++. |.|
T Consensus 83 v~~~~-~~C 90 (90)
T PF00234_consen 83 VSPPY-TDC 90 (90)
T ss_dssp SSSSS-S-G
T ss_pred CCCCC-CCC
Confidence 99887 665
No 8
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=92.06 E-value=0.065 Score=36.37 Aligned_cols=42 Identities=26% Similarity=0.578 Sum_probs=29.4
Q ss_pred chhhhhhhcccccccCCCCCCCcchhhhccccccccchhhhhhccccc
Q 029294 120 GACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLL 167 (195)
Q Consensus 120 gvCanVLggLv~~~lG~p~~~~CCsLI~GL~dldAAvCLCtAIKAnvL 167 (195)
..|.+.+.| -+..+.++||.-++.+.+.| ..|||..+|....
T Consensus 2 ~~C~~y~~~-----~~~~Ps~~CC~~l~~~~~~~-~~ClC~~~~~~~~ 43 (63)
T cd00010 2 APCLSYLTG-----GATAPPSDCCSGLKSVVKSD-PKCLCAALNGPGA 43 (63)
T ss_pred cchHHHHcC-----CCCCCChHHHHHHHHHHhcC-hhhHHHHHcCccc
Confidence 347766631 11345678999999997663 5699999997654
No 9
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=87.45 E-value=0.19 Score=36.72 Aligned_cols=68 Identities=26% Similarity=0.415 Sum_probs=42.5
Q ss_pred ccccchhhhhhhcccccccCCCCCCCcchhhhccccc----cccchhhhhhccccccee-cccccccchhhccCCcCC
Q 029294 116 TLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVEL----EAAVCLCTTLKLKLLNLN-IYLPLALQLLVTCGKTPP 188 (195)
Q Consensus 116 ~LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dl----dAAvCLCtAIKAnvLGIn-l~iPv~L~lLLnCGK~~P 188 (195)
..+|.-|.+.+.|- +..+..+||.-++.|.+. +...|+|.-+|....++. +|...+++|=-.||-..+
T Consensus 7 ~~~l~~C~~y~~g~-----~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP~~C~v~~~ 79 (89)
T cd01960 7 TSLLAPCLGYLTGG-----GPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLPGKCGVSIP 79 (89)
T ss_pred HhhHHhHHHHHhCC-----CCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhChHhcccCCC
Confidence 34677888877521 234567899999998654 223466666776665554 555444544444988754
No 10
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=32.87 E-value=38 Score=26.03 Aligned_cols=9 Identities=56% Similarity=0.453 Sum_probs=4.8
Q ss_pred CcchhhHHHH
Q 029294 1 MDSSKLSALL 10 (195)
Q Consensus 1 m~~~k~~a~~ 10 (195)
|. ||...+|
T Consensus 1 Ma-SK~~llL 9 (95)
T PF07172_consen 1 MA-SKAFLLL 9 (95)
T ss_pred Cc-hhHHHHH
Confidence 77 6654333
Done!