Query 029294
Match_columns 195
No_of_seqs 128 out of 290
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 17:17:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029294.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029294hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hyp_A Hydrophobic protein fro 100.0 6.3E-30 2.2E-34 190.1 0.9 74 109-195 5-79 (80)
2 1l6h_A LTP2, non-specific lipi 96.4 0.00071 2.4E-08 47.4 0.9 61 117-188 6-66 (69)
3 1n89_A Lipid transfer protein; 96.3 0.00065 2.2E-08 47.3 0.2 61 117-188 5-65 (67)
4 2rkn_A DIR1 protein, AT5G48485 94.6 0.0063 2.2E-07 42.9 0.1 69 110-188 3-74 (77)
5 1siy_A LTP 1, NS-LTP1, nonspec 93.0 0.01 3.4E-07 43.3 -1.4 70 112-188 3-78 (91)
6 2alg_A Non-specific lipid tran 92.7 0.0043 1.5E-07 45.4 -3.6 66 116-188 8-79 (92)
7 1bwo_A NS-LTP1, nonspecific li 91.9 0.0064 2.2E-07 44.4 -3.6 66 116-188 7-78 (90)
8 1afh_A Maize nonspecific lipid 85.3 0.051 1.8E-06 39.7 -2.7 71 112-188 4-80 (93)
9 1t12_A LTP 1, nonspecific lipi 78.4 0.18 6.2E-06 36.7 -2.0 66 115-188 7-78 (91)
10 2ljo_A Non-specific lipid-tran 77.0 0.22 7.4E-06 36.7 -1.9 72 117-194 9-89 (93)
No 1
>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1
Probab=99.95 E-value=6.3e-30 Score=190.10 Aligned_cols=74 Identities=41% Similarity=0.971 Sum_probs=66.2
Q ss_pred CCCCCccccccchhhhhhhcccccccCCCCCCCcchhhhccccccccchhhhhhcccccceecccccccchhhc-cCCcC
Q 029294 109 AATCPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLLNLNIYLPLALQLLVT-CGKTP 187 (195)
Q Consensus 109 ~~tCP~d~LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dldAAvCLCtAIKAnvLGInl~iPv~L~lLLn-CGK~~ 187 (195)
.++|| |||+|+|||||++ | ++++||++|+||+|+|||+||||||| +||| +|+|++|++|+| |||++
T Consensus 5 ~~~CP----kLgvCanvL~g~~----~--~~~~CC~Ll~GL~dleAAvCLCtaik--~Lgi-lnlpv~L~llln~Cgk~~ 71 (80)
T 1hyp_A 5 RPSCP----DLSICLNILGGSL----G--TVDDCCALIGGLGDIEAIVCLCIQLR--ALGI-LNLNRNLQLILNSCGRSY 71 (80)
T ss_dssp -CCSC----CCGGGGGGGGTCC----T--THHHHHHHHHTSCHHHHHHHHHHHHH--HHTC-SCHHHHHHHHHHHTTCSS
T ss_pred CCCCC----chhHHHHHhCcCC----C--CCCccchhhhCcchhhhhhhhhhhcc--ccce-eecChhHHHHHHHhCCcC
Confidence 46799 8999999997543 3 46789999999999999999999999 5899 999999999999 99999
Q ss_pred CCCCcccC
Q 029294 188 PAGFTCTL 195 (195)
Q Consensus 188 P~GF~C~~ 195 (195)
|+||+|+.
T Consensus 72 P~gF~C~~ 79 (80)
T 1hyp_A 72 PSNATCPR 79 (80)
T ss_dssp CCCCCCSC
T ss_pred cCCCCCCC
Confidence 99999973
No 2
>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1
Probab=96.44 E-value=0.00071 Score=47.38 Aligned_cols=61 Identities=23% Similarity=0.443 Sum_probs=44.5
Q ss_pred cccchhhhhhhcccccccCCCCCCCcchhhhccccccccchhhhhhcccccceecccccccchhhccCCcCC
Q 029294 117 LKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLLNLNIYLPLALQLLVTCGKTPP 188 (195)
Q Consensus 117 LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dldAAvCLCtAIKAnvLGInl~iPv~L~lLLnCGK~~P 188 (195)
.+|..|.+.+. -|.++..+||+-|++ +..|||..+|...++..||...+.+|.-.||..+|
T Consensus 6 ~~L~pC~~~v~------~~~~Ps~~CC~~lk~-----~~~ClC~~~k~~~~~~~in~~~A~~Lp~~Cgv~~P 66 (69)
T 1l6h_A 6 GQLTVCTGAIA------GGARPTAACCSSLRA-----QQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALP 66 (69)
T ss_dssp TTHHHHHHHHT------TCCSTTHHHHHHHHH-----HHHHHHHHTTCSSHHHHTTTTTGGGCCCCCSSCSC
T ss_pred hhcccCHHHHc------CCCCCCHHHHHhhCC-----CCCCCCccccCcccccccCHHHHHHHHHHcCCCCC
Confidence 36788988773 244566789999985 37899999996555545666666665555999887
No 3
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=96.33 E-value=0.00065 Score=47.33 Aligned_cols=61 Identities=26% Similarity=0.481 Sum_probs=44.3
Q ss_pred cccchhhhhhhcccccccCCCCCCCcchhhhccccccccchhhhhhcccccceecccccccchhhccCCcCC
Q 029294 117 LKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLLNLNIYLPLALQLLVTCGKTPP 188 (195)
Q Consensus 117 LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dldAAvCLCtAIKAnvLGInl~iPv~L~lLLnCGK~~P 188 (195)
.+|..|...+. -|.++..+||+-|++ +..|||..+|.-.++..||...+.+|.-.||..+|
T Consensus 5 ~~L~pC~~~v~------~~~~Ps~~CC~~lk~-----~~~ClC~~~k~~~~~~~in~~~A~~Lp~~Cgv~~P 65 (67)
T 1n89_A 5 SQLAVCASAIL------SGAKPSGECCGNLRA-----QQGCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVP 65 (67)
T ss_dssp STTHHHHHHHT------TCCCCCHHHHHHHHH-----HSSHHHHGGGCSTTHHHHTCHHHHHHHHHHTSCCS
T ss_pred hhcccCHHHHc------CCCCCCHHHHHhhCC-----CCCCCCccccCcccccccCHHHHHHHHHHcCCCCC
Confidence 36788988773 244566789999985 37899999997655544666666665555999887
No 4
>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}
Probab=94.59 E-value=0.0063 Score=42.89 Aligned_cols=69 Identities=22% Similarity=0.387 Sum_probs=45.7
Q ss_pred CCCCccccccchhhhhhhcccccccCCCCCCCcchhhhccccccccchhhhhhcc---cccceecccccccchhhccCCc
Q 029294 110 ATCPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKL---KLLNLNIYLPLALQLLVTCGKT 186 (195)
Q Consensus 110 ~tCP~d~LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dldAAvCLCtAIKA---nvLGInl~iPv~L~lLLnCGK~ 186 (195)
..|-.+..+|..|.+.+.+ .-+..+...||+-|++ +| ..|||..++. +-+|| |...+++|--.||..
T Consensus 3 ~~C~~~~~~L~pC~~yv~~----~~~~~Ps~~CC~~lk~-~~---~~ClC~~~~~~~~~~~gi--n~~~A~~LP~~Cgv~ 72 (77)
T 2rkn_A 3 DLCGMSQDELNECKPAVSK----ENPTSPSQPCCTALQH-AD---FACLCGYKNSPWLGSFGV--DPELASALPKQCGLA 72 (77)
T ss_dssp CBTTBCHHHHHHHGGGGBS----SSCCCCCHHHHHHHTT-CC---HHHHHTTTTCHHHHHHTB--CHHHHHHHHHHTTCS
T ss_pred chHHhHHHhHhhCHHHHcC----CCCCCCCHHHHHHHHh-cC---cCCcCcccCCcchhhcCc--CHHHHHHHHHHcCCC
Confidence 4677777788889887631 1113456679999998 33 3899999883 33354 444455544459998
Q ss_pred CC
Q 029294 187 PP 188 (195)
Q Consensus 187 ~P 188 (195)
+|
T Consensus 73 ~p 74 (77)
T 2rkn_A 73 NA 74 (77)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 5
>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}
Probab=92.96 E-value=0.01 Score=43.35 Aligned_cols=70 Identities=26% Similarity=0.469 Sum_probs=43.6
Q ss_pred CCccccccchhhhhhhcccccccCCCCCCCcchhhhccccc-----c-ccchhhhhhcccccceecccccccchhhccCC
Q 029294 112 CPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVEL-----E-AAVCLCTTLKLKLLNLNIYLPLALQLLVTCGK 185 (195)
Q Consensus 112 CP~d~LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dl-----d-AAvCLCtAIKAnvLGInl~iPv~L~lLLnCGK 185 (195)
|-....+|.-|.+.+.| |.++...||.-|++|.+. | -+.|||..--++-++ .+|...+++|--.||.
T Consensus 3 C~~v~~~L~pCl~yv~~------~~~Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~k~~~~~~~-~in~~~A~~LP~~Cgv 75 (91)
T 1siy_A 3 CGQVQGNLAQCIGFLQK------GGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVR-GINPNNAEALPGKCGV 75 (91)
T ss_dssp TTTTHHHHHHHHHHHTS------CSCCCHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTCCS-SCCHHHHHHHHHHHTC
T ss_pred HHHHHHhccCcHHHHhC------CCCCcHHHHHHHHHHHhhhccCCCCCcCCcccCCcccccC-CcCHHHHHHHHHHcCC
Confidence 55555678889887742 223566799999998643 3 268999722223332 4555555654444999
Q ss_pred cCC
Q 029294 186 TPP 188 (195)
Q Consensus 186 ~~P 188 (195)
.+|
T Consensus 76 ~~p 78 (91)
T 1siy_A 76 NIP 78 (91)
T ss_dssp CCS
T ss_pred CCC
Confidence 865
No 6
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*
Probab=92.75 E-value=0.0043 Score=45.40 Aligned_cols=66 Identities=24% Similarity=0.485 Sum_probs=42.8
Q ss_pred ccccchhhhhhhcccccccCCCCCCCcchhhhccccc-----c-ccchhhhhhcccccceecccccccchhhccCCcCC
Q 029294 116 TLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVEL-----E-AAVCLCTTLKLKLLNLNIYLPLALQLLVTCGKTPP 188 (195)
Q Consensus 116 ~LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dl-----d-AAvCLCtAIKAnvLGInl~iPv~L~lLLnCGK~~P 188 (195)
..+|.-|.+.+.| |.++..+||.-|++|.+. | -+.|||...++.-++ .+|...+++|--.||-.+|
T Consensus 8 ~~~L~pCl~y~~~------~~~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~-~in~~~A~~LP~~Cgv~~p 79 (92)
T 2alg_A 8 SSSLAPCIPYVRG------GGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVP-GVNPNNAAALPGKCGVSIP 79 (92)
T ss_dssp HHHHGGGHHHHHH------CSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHST-TCCHHHHHHHHHHTTCCCS
T ss_pred HHhccCcHHHHcC------CCCCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccC-ccChHHHHHHHHHcCCCCC
Confidence 4467888887742 223445799999998632 2 268999976665553 4455555654444999876
No 7
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=91.91 E-value=0.0064 Score=44.37 Aligned_cols=66 Identities=21% Similarity=0.411 Sum_probs=40.1
Q ss_pred ccccchhhhhhhcccccccCCCCCCCcchhhhcccccc------ccchhhhhhcccccceecccccccchhhccCCcCC
Q 029294 116 TLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELE------AAVCLCTTLKLKLLNLNIYLPLALQLLVTCGKTPP 188 (195)
Q Consensus 116 ~LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dld------AAvCLCtAIKAnvLGInl~iPv~L~lLLnCGK~~P 188 (195)
..+|.-|.+.+.| |..+..+||.-+++|.+.- .+.|||-.-.++-++ .+|...+++|--.||-.+|
T Consensus 7 ~~~L~pCl~y~~~------~~~Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~-~in~~~A~~LP~~C~v~~p 78 (90)
T 1bwo_A 7 DSLVRPCLSYVQG------GPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH-NLNEDNARSIPPKCGVNLP 78 (90)
T ss_dssp HHHHGGGHHHHTT------CSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCT-TCCHHHHHTHHHHHTCCCS
T ss_pred HHhhcccHHHHcC------CCCCCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccC-CcCHHHHHHHHHHcCCCCC
Confidence 3467778887742 2235667999999986421 268999422233332 3455555655555998865
No 8
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=85.28 E-value=0.051 Score=39.66 Aligned_cols=71 Identities=20% Similarity=0.401 Sum_probs=41.9
Q ss_pred CCccccccchhhhhhhcccccccCCCCCCCcchhhhccccc---c---ccchhhhhhcccccceecccccccchhhccCC
Q 029294 112 CPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVEL---E---AAVCLCTTLKLKLLNLNIYLPLALQLLVTCGK 185 (195)
Q Consensus 112 CP~d~LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dl---d---AAvCLCtAIKAnvLGInl~iPv~L~lLLnCGK 185 (195)
|-....+|.-|.+.+.| -+..+..+||.-|++|.+. . -+.|||....+.-++ .+|...+++|=-.||-
T Consensus 4 C~~v~~~L~pCl~y~~~-----~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~-~in~~~A~~LP~~C~v 77 (93)
T 1afh_A 4 CGQVASAIAPCISYARG-----QGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVS-GLNAGNAASIPSKCGV 77 (93)
T ss_dssp SHHHHHHHGGGHHHHTT-----SCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHC
T ss_pred hHHHHHhccCcHHHHcC-----CCCCChHHHHHHHHHHHHhhcCCCCCcccCEeecccccccc-CcCHHHHHHHHHHcCC
Confidence 43344577888887742 1223455799999998532 1 268999755444442 3444445544334988
Q ss_pred cCC
Q 029294 186 TPP 188 (195)
Q Consensus 186 ~~P 188 (195)
.+|
T Consensus 78 ~~p 80 (93)
T 1afh_A 78 SIP 80 (93)
T ss_dssp CCS
T ss_pred CCC
Confidence 765
No 9
>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}
Probab=78.41 E-value=0.18 Score=36.71 Aligned_cols=66 Identities=29% Similarity=0.496 Sum_probs=39.5
Q ss_pred cccccchhhhhhhcccccccCCCCCCCcchhhhcccccc------ccchhhhhhcccccceecccccccchhhccCCcCC
Q 029294 115 DTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELE------AAVCLCTTLKLKLLNLNIYLPLALQLLVTCGKTPP 188 (195)
Q Consensus 115 d~LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dld------AAvCLCtAIKAnvLGInl~iPv~L~lLLnCGK~~P 188 (195)
...+|.-|.+.+.| -+. +. .||.-|++|.+.- .+.|||-.--++-++ .+|...+++|=-.||-.+|
T Consensus 7 v~~~L~pCl~y~~~-----~~~-P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~~~~~-~in~~~A~~LP~~C~v~~p 78 (91)
T 1t12_A 7 VTSNLAPCLAYLRN-----TGP-LG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAIS-GINLGKAAGLPSTCGVNIP 78 (91)
T ss_dssp HHHHTHHHHHHHTT-----SSC-CT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHTTCCCS
T ss_pred HHHhccCcHHHHcC-----CCC-hH-HHHHHHHHHHhhccCCCCCCccCCCccccccccC-CcChhHHHHHHHHcCCCCC
Confidence 34567778887742 123 45 8999999986531 378999622223332 3444445554444998765
No 10
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=77.03 E-value=0.22 Score=36.72 Aligned_cols=72 Identities=25% Similarity=0.415 Sum_probs=43.2
Q ss_pred cccchhhhhhhcccccccCCCCCCCcchhhhcccccc----ccchhhhhhcccccc-eecccccccchhhccCCcCC---
Q 029294 117 LKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELE----AAVCLCTTLKLKLLN-LNIYLPLALQLLVTCGKTPP--- 188 (195)
Q Consensus 117 LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dld----AAvCLCtAIKAnvLG-Inl~iPv~L~lLLnCGK~~P--- 188 (195)
..|.-|.+.+.| |..+..+||.-+++|.+.- ...|+|..+|....+ ..+|...+.+|=-.||-++|
T Consensus 9 ~~L~pCl~Yv~g------~~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a~~LP~~CgV~~p~~I 82 (93)
T 2ljo_A 9 SDLSPCLTYLTG------GPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKI 82 (93)
T ss_dssp HHHHHHHHHHTT------SSCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHHHHHHHHHTCCCSSCC
T ss_pred HHHHhHHHHHcC------CCCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHHHhhhHhcCCCCCCCC
Confidence 345566665531 2234567999888886532 246999999854322 23444444443334999988
Q ss_pred -CCCccc
Q 029294 189 -AGFTCT 194 (195)
Q Consensus 189 -~GF~C~ 194 (195)
..+.|.
T Consensus 83 s~~~dC~ 89 (93)
T 2ljo_A 83 STTTNCN 89 (93)
T ss_dssp STTCCGG
T ss_pred CCCCCCC
Confidence 666674
Done!