Query 029295
Match_columns 195
No_of_seqs 120 out of 262
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 17:19:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029295.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029295hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_P 60S ribosomal protein L 100.0 7E-114 2E-118 728.2 16.7 195 1-195 1-204 (204)
2 4a17_L RPL15, ribosomal protei 100.0 1E-113 4E-118 727.2 15.6 195 1-195 1-204 (204)
3 3jyw_L 60S ribosomal protein L 100.0 3E-107 1E-111 683.1 15.6 183 2-185 1-192 (192)
4 1vq8_M 50S ribosomal protein L 100.0 5E-106 2E-110 676.2 16.6 183 1-185 2-193 (194)
5 3j21_M 50S ribosomal protein L 100.0 1E-105 4E-110 674.2 15.4 184 1-186 1-193 (194)
6 1ffk_I Ribosomal protein L15E; 100.0 4E-104 1E-108 664.7 16.5 182 1-186 2-192 (194)
7 2lp1_A C99; alzheimer'S D memb 62.5 2.1 7.3E-05 33.8 0.0 35 84-125 60-99 (122)
8 1u07_A TONB protein; beta-hair 44.6 34 0.0012 23.5 4.5 34 34-70 4-37 (90)
9 3lpe_B DNA-directed RNA polyme 34.4 18 0.00063 24.8 1.7 22 109-130 15-38 (59)
10 2iqy_A Phosphatidylethanolamin 29.0 24 0.00081 28.4 1.8 27 119-146 65-95 (190)
11 3axy_A Protein heading DATE 3A 28.6 23 0.0008 27.9 1.7 27 119-145 65-94 (170)
12 4f6r_C Stathmin-like domain R1 26.7 26 0.0009 26.1 1.6 11 119-129 15-25 (87)
13 2jyz_A CG7054-PA, GH14779P, PE 25.9 49 0.0017 26.1 3.2 30 117-146 52-84 (179)
14 3n08_A Putative phosphatidylet 25.3 41 0.0014 26.4 2.5 26 118-143 41-68 (153)
15 2gzq_A Phosphatidylethanolamin 25.2 40 0.0014 27.3 2.6 30 117-146 75-107 (200)
16 3dxe_B Amyloid beta A4 protein 24.9 1.6 5.5E-05 27.8 -4.5 10 114-123 23-32 (35)
17 3ryc_E Stathmin-4; alpha-tubul 22.4 34 0.0012 27.4 1.6 11 120-130 17-27 (143)
18 1fux_A Hypothetical 19.5 kDa p 22.0 39 0.0013 26.7 1.8 25 118-144 45-69 (166)
19 2evv_A Hypothetical protein HP 21.9 25 0.00086 29.2 0.7 29 118-146 71-99 (207)
20 2nxv_A ATP synthase subunits r 20.9 34 0.0012 27.1 1.3 9 121-129 47-55 (249)
21 1sqg_A SUN protein, FMU protei 20.8 41 0.0014 29.3 1.9 27 119-145 314-343 (429)
22 1wpx_B Carboxypeptidase Y inhi 20.2 57 0.0019 26.4 2.5 26 118-144 87-116 (220)
No 1
>3iz5_P 60S ribosomal protein L15 (L15E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_P 2zkr_m
Probab=100.00 E-value=6.8e-114 Score=728.22 Aligned_cols=195 Identities=92% Similarity=1.506 Sum_probs=184.8
Q ss_pred CchHHHHHHHHhcccchHHHHHHHHHHHHHhcCCceEEeCCCCCchHHHhhccccccceEEEEEEeeecCCCCCccCCcc
Q 029295 1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV 80 (195)
Q Consensus 1 mg~Y~Yi~e~wkk~~sd~~~~L~r~R~~e~Rq~~~v~Rv~rPTR~dkAR~LGYKAKQG~vv~RvrVRrGgrkrp~~kg~~ 80 (195)
||||+||+|+|++||||+|+||+|+|||||||+|+||||++||||||||+|||||||||||||||||+||+++|+|+|+|
T Consensus 1 mg~Y~yi~e~wkk~~sd~~~~l~r~R~~e~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~Vv~RvrVRrGgrkrp~pkg~~ 80 (204)
T 3iz5_P 1 MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV 80 (204)
T ss_dssp CCTHHHHHHHHHCTTSHHHHHHHHHHHHHHHHSCSEEEESSCSCHHHHTTTCCCCSTTEEEEEEEEESSCCCCSCTTSCC
T ss_pred CcHHHHHHHHHhccccHHHHHHHHHHHHHHhcCCceEEcCCCCChHHHHhcCCccCCeeEEEEEEEeeCCCCCCccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccccccccchhHHHHHHhhhccCCC---------CCCCcceeEEEEeccCccccccCCCCcccccCCccccc
Q 029295 81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL---------KDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRE 151 (195)
Q Consensus 81 ~~kPk~~Gv~~lk~~kslq~iAEER~grk~~nL---------eDg~yK~fEVILVDp~H~aIr~Dp~inWI~~~~hk~Re 151 (195)
||||++||||+|||++|||+|||||||++|||| |||+|||||||||||+||||+|||+|||||+|+|||||
T Consensus 81 ~~kPk~~Gvn~lk~~rslq~iAEERagrk~~nLrVLNSYwV~eDg~yK~fEVILVDp~H~aIr~Dp~~nWI~~~~hk~Re 160 (204)
T 3iz5_P 81 YGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRE 160 (204)
T ss_dssp CSCGGGCCSSSSCCSSCHHHHHHHHHHHHSTTEEEEEEEEEEECSSEEEEEEEEEESSSHHHHTCTTTGGGTSGGGTTTT
T ss_pred ccCcccccccccCccccHHHHHHHHHhccCCCcEEeeeeeecCCCCcceEEEEEecCCchhhccCCccccccCchhcccc
Confidence 999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred ccCCccccccccCCCCCCCcccccCCCchhhhhccCeeEEeecC
Q 029295 152 LRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTLSLRRYR 195 (195)
Q Consensus 152 ~RGLTSAGkK~RGLr~kG~~~~k~r~S~ra~w~r~nt~~l~r~r 195 (195)
||||||||+|+|||++|||+++|++||++|||+++|||+|+|||
T Consensus 161 ~RGLTSAGkk~RGLr~kG~~~~k~r~s~ra~w~r~ntl~l~r~r 204 (204)
T 3iz5_P 161 LRGLTSAGKKYRGLRGKGHTHHKARPSRRATWKRNQTVSLRRYR 204 (204)
T ss_dssp TTTCSHHHHHTTTTTCCSTTGGGTSSCTTTTTTC----------
T ss_pred ccCCccccccccccCCCCCCcccCCcchhhhhhccceeeeEecC
Confidence 99999999999999999999999999999999999999999997
No 2
>4a17_L RPL15, ribosomal protein L15; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_L 4a1c_L 4a1e_L
Probab=100.00 E-value=1.1e-113 Score=727.15 Aligned_cols=195 Identities=67% Similarity=1.172 Sum_probs=193.5
Q ss_pred CchHHHHHHHHhcccchHHHHHHHHHHHHHhcCCceEEeCCCCCchHHHhhccccccceEEEEEEeeecCCCCCccCCcc
Q 029295 1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV 80 (195)
Q Consensus 1 mg~Y~Yi~e~wkk~~sd~~~~L~r~R~~e~Rq~~~v~Rv~rPTR~dkAR~LGYKAKQG~vv~RvrVRrGgrkrp~~kg~~ 80 (195)
||||+||+|+|++||||+|+||+|+|||||||+|+||||++||||||||+|||||||||||||||||+||+++|+|+|+|
T Consensus 1 mg~Y~yi~e~wkk~~sd~~~~l~r~R~~e~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~Vv~RvrVRrGgrkrp~pkg~~ 80 (204)
T 4a17_L 1 MGAYKYLEELWRKKQSDLMSFILRLRTWEYRQLPVIHKASRSSRPDKARKLGYKNKDGYAIWRVRVRRGGRKRPVSKGIV 80 (204)
T ss_dssp -CHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHSCSEEEESSCSCHHHHHHTTCCSSTTEEEEEEEEECSCCCCCCGGGCC
T ss_pred CcHHHHHHHHHhccccHHHHHHHHHHHHHHhcCCceEEcCCCCChHHHHhcCCccCCeeEEEEEEEeeCCCCCCccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccccccccchhHHHHHHhhhccCCC---------CCCCcceeEEEEeccCccccccCCCCcccccCCccccc
Q 029295 81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL---------KDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRE 151 (195)
Q Consensus 81 ~~kPk~~Gv~~lk~~kslq~iAEER~grk~~nL---------eDg~yK~fEVILVDp~H~aIr~Dp~inWI~~~~hk~Re 151 (195)
||||++||||+|||++|||+|||||||++|||| |||+|||||||||||+||||++||+|||||+|+|||||
T Consensus 81 ~~kPk~~Gvn~lk~~kslq~iAEERagrk~~nLrVLNSYwV~eDg~yK~fEVILVDp~H~aIr~Dp~~nWI~~~~hk~Re 160 (204)
T 4a17_L 81 YGKPSSVGINQLKFARNLRSCAEERVGKRVPELRVLNSYWVGQDGTYKFYEVILADPSHNAIRNDPRINWICESAHKHRE 160 (204)
T ss_dssp CSCTTTCCCTTCCCSSCHHHHHHHHHHHHSCSSEEEEEEEEECCSSEEEEEEEEECTTSHHHHHCTTTGGGGSGGGTTTT
T ss_pred ccCcccccccccCcchhHHHHHHHHHhccCCCcEEeeeeeecCCCCcceEEEEEecCCchhhccCCccccccCchhcccc
Confidence 999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred ccCCccccccccCCCCCCCcccccCCCchhhhhccCeeEEeecC
Q 029295 152 LRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTLSLRRYR 195 (195)
Q Consensus 152 ~RGLTSAGkK~RGLr~kG~~~~k~r~S~ra~w~r~nt~~l~r~r 195 (195)
||||||||+|+|||++|||+++|++||++|||+++|||+|+|||
T Consensus 161 ~RGLTsAGkk~RGLr~kG~~~~k~r~s~ra~w~r~ntl~l~r~r 204 (204)
T 4a17_L 161 LRGLTSAGRKGRGLRVKGHRAKSLRTSRKGNWRARQMLKLRRYR 204 (204)
T ss_dssp TTTCSHHHHHHTTTTCCSTTTGGGTTTHHHHHHHHHCCCCCSCC
T ss_pred ccCcccccccccccCCCCCCcccCCcchhhhhhccceeeeEecC
Confidence 99999999999999999999999999999999999999999997
No 3
>3jyw_L 60S ribosomal protein L15(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 3izc_P 3izs_P 3o58_O 3o5h_O 3u5e_N 3u5i_N 4b6a_N 1s1i_L
Probab=100.00 E-value=2.8e-107 Score=683.15 Aligned_cols=183 Identities=73% Similarity=1.208 Sum_probs=181.9
Q ss_pred chHHHHHHHHhcccchHHHHHHHHHHHHHhcCCceEEeCCCCCchHHHhhccccccceEEEEEEeeecCCCCCccCCccc
Q 029295 2 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVY 81 (195)
Q Consensus 2 g~Y~Yi~e~wkk~~sd~~~~L~r~R~~e~Rq~~~v~Rv~rPTR~dkAR~LGYKAKQG~vv~RvrVRrGgrkrp~~kg~~~ 81 (195)
|||+||+|+|++||||+|+||+|+|||||||+|+||||++||||||||+|||||||||||||||||+||+++|+|+|+||
T Consensus 1 g~Y~yi~e~wkk~~sd~~~~l~r~R~~e~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~Vv~RvrVRrGgrkrp~pkg~~~ 80 (192)
T 3jyw_L 1 GAYKYLEELQRKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVIYRVRVRRGNRKRPVPKGATY 80 (192)
T ss_dssp CCCTTTHHHHHCTTSTTHHHHHHHHHHHHHHCCSEEEESSCSSHHHHHHHHCCCSTTCEEEEEECCCSSSBCCCCCSCSC
T ss_pred CHHHHHHHHHhccchHHHHHHHHHHHHHHhcCCceEEcCCCCChHHHHhcCCccCCeeEEEEEEEeECCCCCCccCCCcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccccccchhHHHHHHhhhccCCC---------CCCCcceeEEEEeccCccccccCCCCcccccCCcccccc
Q 029295 82 GKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL---------KDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHREL 152 (195)
Q Consensus 82 ~kPk~~Gv~~lk~~kslq~iAEER~grk~~nL---------eDg~yK~fEVILVDp~H~aIr~Dp~inWI~~~~hk~Re~ 152 (195)
|||++||||+|||++|||+|||||||++|||| |||+|||||||||||+||||+|||+|||||+|+||||||
T Consensus 81 gkPk~~Gvn~lk~~kslq~iAEERagrk~~nLrVLNSYwV~eDg~yK~fEVILVDp~H~aIr~Dp~~nWI~~~~hk~Re~ 160 (192)
T 3jyw_L 81 GKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWVNQDSTYKYFEVILVDPQHKAIRRDARYNWICDPVHKHREA 160 (192)
T ss_dssp SSCSSCCSBCCCCSSCHHHHHHHHHHTTSSSSEEEEEEEEEECSSCEEEEEEEECSSCSSTTTSSTTTGGGSGGGSSTTT
T ss_pred cCcccccccccCccccHHHHHHHHHhccCCCcEEeeeeeecCCCCcceEEEEEecCCchhhccCCccccccCchhccccc
Confidence 99999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred cCCccccccccCCCCCCCcccccCCCchhhhhc
Q 029295 153 RGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 185 (195)
Q Consensus 153 RGLTSAGkK~RGLr~kG~~~~k~r~S~ra~w~r 185 (195)
|||||||+|+||| +|||+++|++||++|||++
T Consensus 161 RGLTsAGkk~RGL-~kG~~~~k~~~s~ra~w~r 192 (192)
T 3jyw_L 161 RGLTATGKKSRGI-NKGHKFNNTKAGRRKTWKR 192 (192)
T ss_dssp TTCSTTGGGGTCC-CCSSTTSSSSSCHHHHTCC
T ss_pred cCCcccccccccc-CCCcCcccCCCcccccccC
Confidence 9999999999999 9999999999999999986
No 4
>1vq8_M 50S ribosomal protein L15E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.2 PDB: 1vq4_M* 1vq5_M* 1vq6_M* 1vq7_M* 1s72_M* 1vqn_M* 2otj_M* 2otl_M* 2qex_M* 2qa4_M* 1vqo_M* 1vq9_M* 1vql_M* 1vqm_M* 1vqk_M* 1vqp_M* 1yij_M* 1yi2_M* 1yit_M* 1yj9_M* ...
Probab=100.00 E-value=4.9e-106 Score=676.24 Aligned_cols=183 Identities=42% Similarity=0.678 Sum_probs=182.0
Q ss_pred CchHHHHHHHHhcccchHHHHHHHHHHHHHhcCCceEEeCCCCCchHHHhhccccccceEEEEEEeeecCCCCCccCCcc
Q 029295 1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV 80 (195)
Q Consensus 1 mg~Y~Yi~e~wkk~~sd~~~~L~r~R~~e~Rq~~~v~Rv~rPTR~dkAR~LGYKAKQG~vv~RvrVRrGgrkrp~~kg~~ 80 (195)
||||+||+|+|++||||+|+||+|+|||||||+|+||||++||||||||+||||||||||||||||||||+++|+|+|+
T Consensus 2 mgaY~Yi~e~wkkkqsd~~r~llr~R~~e~Rq~~~i~R~~rPTR~DkAR~LGYKAKQG~vv~RvrVRrGgrkrp~pkg~- 80 (194)
T 1vq8_M 2 RSAYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVARVSVRKGSARKRRHKAG- 80 (194)
T ss_dssp CCSHHHHHHHTTSTTSHHHHHHHHHHHHHHTTSCSEEEESSCSSHHHHHHHTCCSSTTEEEEEEEEECSSCCCCCCSSC-
T ss_pred ccHHHHHHHHHhCcchHHHHHHHHHHHHHHhCCCceEEcCCCCChhHHHhcCCccCCeEEEEEEEeccCCCCCCCcCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccccccccchhHHHHHHhhhccCCC---------CCCCcceeEEEEeccCccccccCCCCcccccCCccccc
Q 029295 81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL---------KDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRE 151 (195)
Q Consensus 81 ~~kPk~~Gv~~lk~~kslq~iAEER~grk~~nL---------eDg~yK~fEVILVDp~H~aIr~Dp~inWI~~~~hk~Re 151 (195)
|||++||||+|||++|||+|||||||++|||| |||+|||||||||||+||||+|||+|||||+|+|||||
T Consensus 81 -~kPk~~Gv~~lk~~rslq~iAEERagrk~~nLrVLNSYWV~eD~~yK~yEVILVDp~H~aIr~Dp~~nWI~~~~hk~Re 159 (194)
T 1vq8_M 81 -RRSKRQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRV 159 (194)
T ss_dssp -CCGGGTCCSSCCCSSCHHHHHHHHHHHHSTTCEEEEEEEEEEETTEEEEEEEEECTTCHHHHTCTTTGGGGSGGGTTGG
T ss_pred -CCccccCccccCccccHHHHHHHHHhccCCCceeeeeEEeccCCceeEEEEEEEcCCcHhhhcCcccccccCcccccch
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred ccCCccccccccCCCCCCCcccccCCCchhhhhc
Q 029295 152 LRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 185 (195)
Q Consensus 152 ~RGLTSAGkK~RGLr~kG~~~~k~r~S~ra~w~r 185 (195)
||||||||+|+|||++|||+++|++||++|+|++
T Consensus 160 ~RGLTsaGkk~RGL~~kG~~~~k~~~~~ra~w~~ 193 (194)
T 1vq8_M 160 FRGLTGAGRRNRGLSGKGKGSEKTRPSLRSNGGK 193 (194)
T ss_dssp GGTCSHHHHHHTTCSCSSTTCTTTSSCTTTTTSC
T ss_pred hccccccccccCccCCCCCCcccCCcccchhhcc
Confidence 9999999999999999999999999999999986
No 5
>3j21_M 50S ribosomal protein L15E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.2e-105 Score=674.16 Aligned_cols=184 Identities=51% Similarity=0.822 Sum_probs=182.5
Q ss_pred CchHHHHHHHHhcccchHHHHHHHHHHHHHhcCCceEEeCCCCCchHHHhhccccccceEEEEEEeeecCCCCCccCCcc
Q 029295 1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV 80 (195)
Q Consensus 1 mg~Y~Yi~e~wkk~~sd~~~~L~r~R~~e~Rq~~~v~Rv~rPTR~dkAR~LGYKAKQG~vv~RvrVRrGgrkrp~~kg~~ 80 (195)
||||+||+|+|++||||+|+||+|+|||||||+|+||||++||||||||+|||||||||||||||||+||+++|+|+|+
T Consensus 1 Mg~Y~yi~e~wkkk~s~~~~~l~r~R~~e~Rq~~ai~R~~rPTR~dkAR~LGYKAKQG~Vv~RvrVrrGgrkr~~pkg~- 79 (194)
T 3j21_M 1 MGMYKYIREAWKSPKKSYVGELLKQRMIKWRREPVVVRIERPTRLDRARALGYQAKQGYVIVRVRVRKGGRKRPRWKGG- 79 (194)
T ss_dssp CCHHHHHHHHHHSTTSTTHHHHHHHHHHHHHHSCSEEEESSCSSHHHHHHHHCCCSTTEEEEEEEEESSCCCCCCCSSC-
T ss_pred CcHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCceeecCCCCChhHHHhcCccccCceEEEEEEEeeCCCCCCCcCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccccccccchhHHHHHHhhhccCCC---------CCCCcceeEEEEeccCccccccCCCCcccccCCccccc
Q 029295 81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL---------KDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRE 151 (195)
Q Consensus 81 ~~kPk~~Gv~~lk~~kslq~iAEER~grk~~nL---------eDg~yK~fEVILVDp~H~aIr~Dp~inWI~~~~hk~Re 151 (195)
+||++||||+|||++|||+|||||||++|||| |||+|||||||||||+||||+|||+|||||+|+|||||
T Consensus 80 -~kPk~~Gv~~lk~~kslq~iAEERagrk~~nLrVLNSYwV~eDg~yK~fEVILVDp~H~aIr~Dp~~nWI~~~~hk~Re 158 (194)
T 3j21_M 80 -RKPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIALKHHKGRV 158 (194)
T ss_dssp -CCTTTTCCSSCCCSSCHHHHHHHHHHHHSTTSEEEEEEEEEECSSEEEEEEEEECSSCHHHHHSTTTGGGGSGGGTTHH
T ss_pred -CCcccccccccCccccHHHHHHHHHhccCCCceeeeceeecCCCCceeEEEEEEcCCChhhccCCcccccccccccccc
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred ccCCccccccccCCCCCCCcccccCCCchhhhhcc
Q 029295 152 LRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRN 186 (195)
Q Consensus 152 ~RGLTSAGkK~RGLr~kG~~~~k~r~S~ra~w~r~ 186 (195)
||||||||+|+|||++|||+++|++||++|||++.
T Consensus 159 ~RGLTsAGkk~RGL~~kG~~~~k~rps~ra~~~~~ 193 (194)
T 3j21_M 159 FRGLTSAGKKGRGLRNKGKGAEKVRPSIRANEGKG 193 (194)
T ss_dssp HHCCSHHHHHHHTTTCSSTTCSSSSSCSTTSSSCC
T ss_pred ccCccccccccccccccCCcccccCcccccccccC
Confidence 99999999999999999999999999999999863
No 6
>1ffk_I Ribosomal protein L15E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.12.1.2
Probab=100.00 E-value=3.9e-104 Score=664.71 Aligned_cols=182 Identities=44% Similarity=0.752 Sum_probs=180.7
Q ss_pred CchHHHHHHHHhcccchHHHHHHHHHHHHHhcCCceEEeCCCCCchHHHhhccccccceEEEEEEeeecCCCCCccCCcc
Q 029295 1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV 80 (195)
Q Consensus 1 mg~Y~Yi~e~wkk~~sd~~~~L~r~R~~e~Rq~~~v~Rv~rPTR~dkAR~LGYKAKQG~vv~RvrVRrGgrkrp~~kg~~ 80 (195)
||||+||+|+|++||||+|+||+|+|||||||+|+||||++||||||||+|||||||||||||||||+||+++|+|+|+
T Consensus 2 mgaY~Yi~e~wkkkqsd~~r~llr~R~~e~Rq~~~i~R~~rPTR~DkAR~LGYKAKQG~vv~RvrVRrGgrkrp~pkg~- 80 (194)
T 1ffk_I 2 KSMYAYIREAWKRPYEGYVGELMWHRLQKWRREPAVVRIPRPTRLDRARALGYKAKKGIIVVRVRIRRGGRRATRPNKG- 80 (194)
T ss_pred ccHHHHHHHHHhCcchHHHHHHHHHHHHHHhCCCceEEcCCCCchhHHHhcCCccCCeEEEEEEEeccCCCCCCCcCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccccccccchhHHHHHHhhhccCCC---------CCCCcceeEEEEeccCccccccCCCCcccccCCccccc
Q 029295 81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL---------KDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRE 151 (195)
Q Consensus 81 ~~kPk~~Gv~~lk~~kslq~iAEER~grk~~nL---------eDg~yK~fEVILVDp~H~aIr~Dp~inWI~~~~hk~Re 151 (195)
|||++||||+|||++|||+|||||||++|||| |||+|||||||||||+||||+|||+|||||+ |||||
T Consensus 81 -~kPk~~Gvn~lk~~rslq~iAEERagrk~~nLrVLNSYWV~qD~~yK~yEVILVDp~H~aIr~Dp~~nWI~~--hk~Re 157 (194)
T 1ffk_I 81 -RKSKKMMVNRRPRKKNLQWIAEERANRKYPNMEVLNSYWVGEDGRYKWFEVILVDRDHPAIKSDPQLSWVSR--TRGRV 157 (194)
T ss_pred -CCccccCccccCccccHHHHHHHHHhccCCCceeeeeEEeccCCceeEEEEEEEcCCcHhhhcCcccccccc--cccch
Confidence 99999999999999999999999999999999 9999999999999999999999999999999 99999
Q ss_pred ccCCccccccccCCCCCCCcccccCCCchhhhhcc
Q 029295 152 LRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRN 186 (195)
Q Consensus 152 ~RGLTSAGkK~RGLr~kG~~~~k~r~S~ra~w~r~ 186 (195)
||||||||+|+|||++|||+++|++||++|+|++.
T Consensus 158 ~RGLTsaGkk~RGL~~kG~~~~k~~~~~ra~w~r~ 192 (194)
T 1ffk_I 158 YRGLTSAGRKARGLRRKGRGAEKVRPSLRANFRKK 192 (194)
T ss_pred hccccccccccCccCCCCCCcccCCcchhhhhhhc
Confidence 99999999999999999999999999999999974
No 7
>2lp1_A C99; alzheimer'S D membrane protein, transmembrane Pro; NMR {Homo sapiens}
Probab=62.47 E-value=2.1 Score=33.76 Aligned_cols=35 Identities=31% Similarity=0.620 Sum_probs=24.5
Q ss_pred cccccccccccccchhHHHHHHhhhccCCC-----CCCCcceeEEEE
Q 029295 84 PTNQGVTQLKFQRSKRSVAEERAGRKLGGL-----KDSTYKYFEVIL 125 (195)
Q Consensus 84 Pk~~Gv~~lk~~kslq~iAEER~grk~~nL-----eDg~yK~fEVIL 125 (195)
|-++|+...-+ .++-| -|+..|| ||=||||||.+=
T Consensus 60 ~~s~GfvEVDp-----~~TPE--ERHva~MQ~nGYENPTYKffE~~~ 99 (122)
T 2lp1_A 60 SIHHGVVEVDA-----AVTPE--ERHLSKMQQNGYENPTYKFFEQMQ 99 (122)
Confidence 55778765544 33344 4678888 999999999763
No 8
>1u07_A TONB protein; beta-hairpin, protein transport; 1.13A {Escherichia coli} SCOP: d.212.1.2 PDB: 2gsk_B* 1ihr_A 1qxx_A
Probab=44.58 E-value=34 Score=23.53 Aligned_cols=34 Identities=26% Similarity=0.474 Sum_probs=27.4
Q ss_pred CceEEeCCCCCchHHHhhccccccceEEEEEEeeecC
Q 029295 34 PSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGG 70 (195)
Q Consensus 34 ~~v~Rv~rPTR~dkAR~LGYKAKQG~vv~RvrVRrGg 70 (195)
|....-..|.-|..|+++|. +|.|++++.|-.-|
T Consensus 4 p~~l~~~~~~YP~~a~~~~~---~G~V~v~~~i~~~G 37 (90)
T 1u07_A 4 PRALSRNQPQYPARAQALRI---EGQVKVKFDVTPDG 37 (90)
T ss_dssp CCEEECCCCCCCHHHHHHTC---CEEEEEEEEECTTS
T ss_pred CcCcccCCCCCcHHHHHCCC---ceEEEEEEEECCCC
Confidence 45555567899999999975 89999999998654
No 9
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=34.37 E-value=18 Score=24.79 Aligned_cols=22 Identities=9% Similarity=0.084 Sum_probs=14.6
Q ss_pred ccCCCCCCCcceeE--EEEeccCc
Q 029295 109 KLGGLKDSTYKYFE--VILVDAAH 130 (195)
Q Consensus 109 k~~nLeDg~yK~fE--VILVDp~H 130 (195)
.|||-++.+..-|+ ||++||..
T Consensus 15 ~CpnC~~~tt~~~~G~v~i~dP~~ 38 (59)
T 3lpe_B 15 ICPICHSPTSENWIGLLIVINPEK 38 (59)
T ss_dssp BCTTTCCBEESCEECEEEESCTTT
T ss_pred CCCCCCCCccCCEeeEEEEeCCch
Confidence 59999655555565 67777743
No 10
>2iqy_A Phosphatidylethanolamine-binding protein 1; alpha-beta, hydrolase inhibitor; 1.40A {Rattus norvegicus} PDB: 2iqx_A 1b7a_A* 1a44_A 1beh_A 1bd9_A 2l7w_A 2qyq_A* 1kn3_A
Probab=29.04 E-value=24 Score=28.40 Aligned_cols=27 Identities=19% Similarity=0.430 Sum_probs=20.5
Q ss_pred ceeEEEEeccCccccccCC----CCcccccCC
Q 029295 119 KYFEVILVDAAHNAIRNDP----RINWICKPV 146 (195)
Q Consensus 119 K~fEVILVDp~H~aIr~Dp----~inWI~~~~ 146 (195)
+.|=|||+||+-|.- +|| -+-||.-..
T Consensus 65 ~~ytlvm~DpDaP~~-~~p~~~~~~HWlv~nI 95 (190)
T 2iqy_A 65 KLYTLVLTDPDAPSR-KDPKFREWHHFLVVNM 95 (190)
T ss_dssp SEEEEEEEESSSSCS-SSCTTCCEEEEEEEEE
T ss_pred CEEEEEEECCCCCCC-CCCCcCCEEEEEEeCC
Confidence 999999999999974 444 457876543
No 11
>3axy_A Protein heading DATE 3A; phosphatidylethanolamine-binding protein, 14-3-3 protein, BZ protein, floral induction; HET: SEP; 2.40A {Oryza sativa japonica group} PDB: 1wkp_A
Probab=28.64 E-value=23 Score=27.93 Aligned_cols=27 Identities=11% Similarity=0.522 Sum_probs=20.0
Q ss_pred ceeEEEEeccCccccccC---CCCcccccC
Q 029295 119 KYFEVILVDAAHNAIRND---PRINWICKP 145 (195)
Q Consensus 119 K~fEVILVDp~H~aIr~D---p~inWI~~~ 145 (195)
+.|=|||+||+-|.-.++ .-+-||.-.
T Consensus 65 ~~ytlvm~DpDaP~~~~p~~~~~~HWlv~n 94 (170)
T 3axy_A 65 TFYTLVMVDPDAPSPSDPNLREYLHWLVTD 94 (170)
T ss_dssp CEEEEEEEETTCSCTTSCTTCSEEEEEEEE
T ss_pred cEEEEEEECCCCCCCccCCCccEEEEEEeC
Confidence 899999999999974332 345777654
No 12
>4f6r_C Stathmin-like domain R1; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, subtilisin, tubulin; HET: GTP GDP MES; 2.64A {Artificial gene}
Probab=26.74 E-value=26 Score=26.06 Aligned_cols=11 Identities=36% Similarity=0.522 Sum_probs=9.3
Q ss_pred ceeEEEEeccC
Q 029295 119 KYFEVILVDAA 129 (195)
Q Consensus 119 K~fEVILVDp~ 129 (195)
-=|||||-+|+
T Consensus 15 qafEvILkpps 25 (87)
T 4f6r_C 15 QSWEVILKPPS 25 (87)
T ss_dssp EEEEEEEECCC
T ss_pred cceEEEecCCC
Confidence 35999999887
No 13
>2jyz_A CG7054-PA, GH14779P, PEBP; PEBP/RKIP, molecular modeling, chemical shift variations, titration, unknown function; NMR {Drosophila melanogaster}
Probab=25.95 E-value=49 Score=26.15 Aligned_cols=30 Identities=10% Similarity=0.334 Sum_probs=22.6
Q ss_pred CcceeEEEEeccCccccccC---CCCcccccCC
Q 029295 117 TYKYFEVILVDAAHNAIRND---PRINWICKPV 146 (195)
Q Consensus 117 ~yK~fEVILVDp~H~aIr~D---p~inWI~~~~ 146 (195)
.-+.|=|||+||+-|.-.++ .-+-||.-..
T Consensus 52 ~t~~ytlvm~DpDaP~~~~p~~~~~~HWlv~nI 84 (179)
T 2jyz_A 52 KSNLLTLLMVDPDAPTRQDPKYREILHWSVVNI 84 (179)
T ss_dssp SCSEEEEEEECCCSSCTTCCSSCCCSCCEEECC
T ss_pred CceeEEEEEeCCCCCCCccCCCccEEEEEEECC
Confidence 35999999999999975432 4578887544
No 14
>3n08_A Putative phosphatidylethanolamine-binding protein; eukarytic homolog RAF kinase inhibitor protein (RKIP). csgid structural genomics; 1.25A {Chlamydia trachomatis} SCOP: b.17.1.0
Probab=25.30 E-value=41 Score=26.44 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=18.2
Q ss_pred cceeEEEEeccCcccccc--CCCCcccc
Q 029295 118 YKYFEVILVDAAHNAIRN--DPRINWIC 143 (195)
Q Consensus 118 yK~fEVILVDp~H~aIr~--Dp~inWI~ 143 (195)
-|.|=|||+||+-|.-.+ -+-+-||.
T Consensus 41 tks~ali~~DpDAPs~~~~~~~~~HWvv 68 (153)
T 3n08_A 41 AKSLVLIVEDPDVPPSVREDGLWIHWIV 68 (153)
T ss_dssp CCEEEEEEEETTSCTTTCTTSCEEEEEE
T ss_pred CeEEEEEEECCCCCCccCCCCcEEEEEE
Confidence 489999999999995331 13355664
No 15
>2gzq_A Phosphatidylethanolamine-binding protein; structural genomics, PSI, protein structure initiative; HET: MSE; 1.30A {Plasmodium vivax} PDB: 2r77_A
Probab=25.25 E-value=40 Score=27.27 Aligned_cols=30 Identities=10% Similarity=0.325 Sum_probs=21.1
Q ss_pred CcceeEEEEeccCccccccC---CCCcccccCC
Q 029295 117 TYKYFEVILVDAAHNAIRND---PRINWICKPV 146 (195)
Q Consensus 117 ~yK~fEVILVDp~H~aIr~D---p~inWI~~~~ 146 (195)
.-+.|=|||+||+-|.-.++ .-+-||.-..
T Consensus 75 ~~~~ytLvm~DPDaP~~~~~~~~~~~HWlv~nI 107 (200)
T 2gzq_A 75 EDYCYILFMIDPDFPSRRRPDGRDYVHWAVSGI 107 (200)
T ss_dssp TTEEEEEEEEETTCSCSSCCTTCSEEEEEEEEE
T ss_pred CCceEEEEEECCCCCCCCCCCCCCEEEEEEeCC
Confidence 35899999999999965433 2357776443
No 16
>3dxe_B Amyloid beta A4 protein; alzheimer'S disease, APP, AICD, Fe65, PTB domain, alternative splicing, polymorphism, alzheimer disease, apoptosis; 2.00A {Homo sapiens} PDB: 3dxc_B 3dxd_B 2roz_A
Probab=24.92 E-value=1.6 Score=27.76 Aligned_cols=10 Identities=50% Similarity=1.049 Sum_probs=8.4
Q ss_pred CCCCcceeEE
Q 029295 114 KDSTYKYFEV 123 (195)
Q Consensus 114 eDg~yK~fEV 123 (195)
|.-||||||.
T Consensus 23 ENPTYkyfE~ 32 (35)
T 3dxe_B 23 ENPTYKFFEQ 32 (35)
T ss_dssp ECHHHHHHHH
T ss_pred cCcHHHHHHh
Confidence 7789999983
No 17
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=22.38 E-value=34 Score=27.43 Aligned_cols=11 Identities=36% Similarity=0.474 Sum_probs=9.5
Q ss_pred eeEEEEeccCc
Q 029295 120 YFEVILVDAAH 130 (195)
Q Consensus 120 ~fEVILVDp~H 130 (195)
=|||||-.|+-
T Consensus 17 afEvIL~pps~ 27 (143)
T 3ryc_E 17 SWEVILKPPSF 27 (143)
T ss_dssp EEEEEEECCSS
T ss_pred ceeeeecCCCC
Confidence 59999999974
No 18
>1fux_A Hypothetical 19.5 kDa protein in EMRE-RUS intergenic region; beta protein, unknown function; 1.81A {Escherichia coli} SCOP: b.17.1.2
Probab=21.98 E-value=39 Score=26.70 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=19.1
Q ss_pred cceeEEEEeccCccccccCCCCccccc
Q 029295 118 YKYFEVILVDAAHNAIRNDPRINWICK 144 (195)
Q Consensus 118 yK~fEVILVDp~H~aIr~Dp~inWI~~ 144 (195)
-|.|=|||+||+-|.- -+-+-||.-
T Consensus 45 t~s~ali~~DPDAP~~--~~~~HW~v~ 69 (166)
T 1fux_A 45 TKSFAVTVYDPDAPTG--SGWWHWTVV 69 (166)
T ss_dssp CCEEEEEEEETTSTTT--TCEEEEEEE
T ss_pred CeEEEEEEECCCCCCC--CcEEEeEEe
Confidence 3999999999999942 345677664
No 19
>2evv_A Hypothetical protein HP0218; alpha-beta structure, dimer, structural genomics, PSI, prote structure initiative; HET: MSE; 2.59A {Helicobacter pylori}
Probab=21.89 E-value=25 Score=29.19 Aligned_cols=29 Identities=14% Similarity=0.429 Sum_probs=22.5
Q ss_pred cceeEEEEeccCccccccCCCCcccccCC
Q 029295 118 YKYFEVILVDAAHNAIRNDPRINWICKPV 146 (195)
Q Consensus 118 yK~fEVILVDp~H~aIr~Dp~inWI~~~~ 146 (195)
-|.|=|||+||+-|.-..-+=+-||.-..
T Consensus 71 tks~aLvm~DPDAP~~~g~~~~HWvv~NI 99 (207)
T 2evv_A 71 AQSYALELIDHDAQKVCGMPFVHWVVGNI 99 (207)
T ss_dssp CSEEEEEEEETTHHHHHSSCEEEEEEEEE
T ss_pred CeEEEEEEECCCCCCCCCCcEEEEEEeCC
Confidence 48999999999999854335678877655
No 20
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=20.95 E-value=34 Score=27.13 Aligned_cols=9 Identities=22% Similarity=0.257 Sum_probs=7.8
Q ss_pred eEEEEeccC
Q 029295 121 FEVILVDAA 129 (195)
Q Consensus 121 fEVILVDp~ 129 (195)
||||+||=.
T Consensus 47 ~EiIVVDn~ 55 (249)
T 2nxv_A 47 AEFLAADNR 55 (249)
T ss_dssp EEEEEEECT
T ss_pred EEEEEEECC
Confidence 999999954
No 21
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=20.83 E-value=41 Score=29.30 Aligned_cols=27 Identities=37% Similarity=0.768 Sum_probs=21.1
Q ss_pred ceeEEEEeccCc---cccccCCCCcccccC
Q 029295 119 KYFEVILVDAAH---NAIRNDPRINWICKP 145 (195)
Q Consensus 119 K~fEVILVDp~H---~aIr~Dp~inWI~~~ 145 (195)
.-|.+||+||-. -.++++|++.|..++
T Consensus 314 ~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~ 343 (429)
T 1sqg_A 314 QQFDRILLDAPCSATGVIRRHPDIKWLRRD 343 (429)
T ss_dssp CCEEEEEEECCCCCGGGTTTCTTHHHHCCT
T ss_pred CCCCEEEEeCCCCcccccCCCcchhhcCCH
Confidence 359999999954 568899999886543
No 22
>1wpx_B Carboxypeptidase Y inhibitor; carboxypeptidase inhibitor, serine proteinase inhibitor, Pro inhibitor complex; HET: NAG NDG; 2.70A {Saccharomyces cerevisiae} SCOP: b.17.1.1
Probab=20.17 E-value=57 Score=26.44 Aligned_cols=26 Identities=12% Similarity=0.155 Sum_probs=19.3
Q ss_pred cceeEEEEeccCccccccCC----CCccccc
Q 029295 118 YKYFEVILVDAAHNAIRNDP----RINWICK 144 (195)
Q Consensus 118 yK~fEVILVDp~H~aIr~Dp----~inWI~~ 144 (195)
-+.|=|||+||+-|.- .|| -+-||.-
T Consensus 87 ~~~~~lvm~DpDaP~~-~~p~~~~~~HW~v~ 116 (220)
T 1wpx_B 87 DDLFTLVMTDPDAPSK-TDHKWSEFCHLVEC 116 (220)
T ss_dssp SCCEEEEEEESSSSCS-SCCTTCSEEEEEEE
T ss_pred CceEEEEEECCCCCCC-CCCCcCcEEEEEEE
Confidence 3899999999999954 444 3567664
Done!