BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>029296
MGFLAATAAASVYPSAYMELRWVRGRGKGKCELNFKPSMIPIYISTNPSDINPQELSQLF
ISCNHSCNRFPILDSRDRTVEEAVDIDKLCLALSHSFVVVSVFSNLALSDDESSKRLMVP
LLGNLAQRVVPVTPSNGQLVGFGRAVSDVGLTASIHDIMVIPSLRQMGIGRMIVQRILRF
VNFQYNKFLSFFLFV

High Scoring Gene Products

Symbol, full name Information P value
AT4G19985 protein from Arabidopsis thaliana 4.4e-34

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029296
        (195 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006501 - symbol:AT4G19985 species:3702 "Ara...   226  4.4e-34   2


>TAIR|locus:505006501 [details] [associations]
            symbol:AT4G19985 species:3702 "Arabidopsis thaliana"
            [GO:0005739 "mitochondrion" evidence=ISM] [GO:0008080
            "N-acetyltransferase activity" evidence=IEA;ISS] [GO:0008152
            "metabolic process" evidence=ISS] [GO:0009965 "leaf morphogenesis"
            evidence=RCA] [GO:0030154 "cell differentiation" evidence=RCA]
            InterPro:IPR000182 Pfam:PF00583 PROSITE:PS51186 EMBL:CP002687
            Gene3D:3.40.630.30 InterPro:IPR016181 SUPFAM:SSF55729 GO:GO:0008080
            EMBL:AY054636 EMBL:AY072491 IPI:IPI00545036 RefSeq:NP_567592.1
            UniGene:At.26452 ProteinModelPortal:Q940H2 SMR:Q940H2 STRING:Q940H2
            EnsemblPlants:AT4G19985.1 GeneID:827743 KEGG:ath:AT4G19985
            TAIR:At4g19985 InParanoid:Q940H2 OMA:FFKACGF PhylomeDB:Q940H2
            ProtClustDB:CLSN2689521 Genevestigator:Q940H2 Uniprot:Q940H2
        Length = 237

 Score = 226 (84.6 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
 Identities = 43/60 (71%), Positives = 53/60 (88%)

Query:   122 LGNLAQRVVPVTPSNGQLVGFGRAVSDVGLTASIHDIMVIPSLRQMGIGRMIVQRILRFV 181
             LG+L Q  VP+TPSNGQLVGFGRA SD GLTASIHD+MV+PSL++MGIG++IV RI+R +
Sbjct:   135 LGDLFQNAVPLTPSNGQLVGFGRAYSDYGLTASIHDLMVLPSLQRMGIGKLIVNRIVRLL 194

 Score = 160 (61.4 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
 Identities = 37/72 (51%), Positives = 43/72 (59%)

Query:    18 MELRWVRGRGKGKCELNFKPSMIPIYISTNPSDINPQELSQLFISCNHSCNRFPILDSRD 77
             MELRW R R K     +  P  IPIYIST   DIN +EL  L+  CNHSCNR   L  +D
Sbjct:    15 MELRWARRR-KSDNAASALPRSIPIYISTLKKDINLEELRNLYSLCNHSCNR---LSEKD 70

Query:    78 RTVEEAVDIDKL 89
               VE+ VD+ KL
Sbjct:    71 SNVEKIVDMKKL 82


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.141   0.426    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      195       170   0.00086  108 3  11 22  0.47    31
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  142 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:04
  No. of threads or processors used:  24
  Search cpu time:  14.95u 0.07s 15.02t   Elapsed:  00:00:09
  Total cpu time:  14.95u 0.07s 15.02t   Elapsed:  00:00:13
  Start:  Fri May 10 14:01:33 2013   End:  Fri May 10 14:01:46 2013

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