BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029296
(195 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WK4|A Chain A, Crystal Structure Of Ttk003001606
pdb|1WK4|B Chain B, Crystal Structure Of Ttk003001606
pdb|1WK4|C Chain C, Crystal Structure Of Ttk003001606
pdb|2CY2|A Chain A, Crystal Structure Of Ttha1209 In Complex With Acetyl
Coenzyme A
Length = 174
Score = 33.9 bits (76), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 111 DESSKRLMVPLLGNLAQRVVPVTPSNGQLVGFG-----RAVSDVGLTASIHDIMVIPSLR 165
+ ++RL P R+ +G++VGF RA G TA + I V+P+ +
Sbjct: 45 ERWAQRLKTP---TWPGRLFVAESESGEVVGFAAFGPDRASGFPGYTAELWAIYVLPTWQ 101
Query: 166 QMGIGRMIVQRILRFVNFQ-YNKFLSFFL 193
+ G+GR + R + + Y + L + L
Sbjct: 102 RKGLGRALFHEGARLLQAEGYGRXLVWVL 130
>pdb|3S6F|A Chain A, Crystal Structure Of A Hypotetical Acetyltransferase
(Dr_1678) From Deinococcus Radiodurans At 1.19 A
Resolution
Length = 145
Score = 33.9 bits (76), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 129 VVPVTPSNGQLVGFGRAVSDVGLTASIHDIMVIPSLRQMGIGRMIVQRILRFVNFQYNKF 188
V+ TP +GQ++GF A+SD L ASI + V R +G+G + +R+L + Y
Sbjct: 51 VLARTP-DGQVIGFVNALSDGILAASIPLLEVQAGWRSLGLGSELXRRVLTELGDLYXVD 109
Query: 189 LS 190
LS
Sbjct: 110 LS 111
>pdb|1Y7R|A Chain A, 1.7 A Crystal Structure Of Protein Of Unknown Function
Sa2161 From Meticillin-Resistant Staphylococcus Aureus,
Probable Acetyltransferase
pdb|1Y7R|B Chain B, 1.7 A Crystal Structure Of Protein Of Unknown Function
Sa2161 From Meticillin-Resistant Staphylococcus Aureus,
Probable Acetyltransferase
Length = 133
Score = 33.1 bits (74), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 138 QLVGFGRAVSDVGLTASIHDIMVIPSLRQMGIGRMIVQRILRFVN 182
+L+G GR + D G I DI V+ S + G +I + I +++
Sbjct: 49 RLIGXGRVIGDGGTVFQIVDIAVLKSYQGQAYGSLIXEHIXKYIK 93
>pdb|2OZH|A Chain A, Crystal Structure Of A Putative Acetyltransferase
Belonging To The Gnat Family (Xcc2953) From Xanthomonas
Campestris Pv. Campestris At 1.40 A Resolution
Length = 142
Score = 30.0 bits (66), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 136 NGQLVGFGRAVSDVGLTASIHDIMVIPSLRQMGIGRMIVQRILRFVNFQ 184
+G+ V F R +SD A + D+ V+P R G + + + + Q
Sbjct: 53 DGRQVAFARVISDYATFAYLGDVFVLPEHRGRGYSKALXDAVXAHPDLQ 101
>pdb|3DSS|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)
pdb|3DST|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Geranylgeranyl Pyrophosphate
pdb|3DSU|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Farnesyl Pyrophosphate
pdb|3DSV|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys-Ser-Cys(Gg)
Derivated From Rab7
pdb|3DSW|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys(Gg)-Ser-Cys
Derivated From Rab7
pdb|3DSX|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Di-Prenylated Peptide
Ser-Cys(Gg)-Ser-Cys(Gg) Derivated From Rab7
pdb|3HXB|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 6)
pdb|3HXC|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 8)
pdb|3HXD|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 9)
pdb|3HXE|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 37)
pdb|3HXF|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 32)
Length = 331
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 15 SAYMELRWVRGRGKGKCELNFKPSMI 40
SA+ RW+ G G G+CEL+ + S +
Sbjct: 228 SAWFYHRWLLGAGSGRCELSVEKSTV 253
>pdb|4EHM|A Chain A, Rabggtase In Complex With Covalently Bound Psoromic Acid
pdb|4GTS|A Chain A, Engineered Rabggtase In Complex With Bms Analogue 16
pdb|4GTT|A Chain A, Engineered Rabggtase In Complex With Bms Analogue 12
pdb|4GTV|A Chain A, Engineered Rabggtase In Complex With Bms Analogue 13
Length = 330
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 15 SAYMELRWVRGRGKGKCELNFKPSMI 40
SA+ RW+ G G G+CEL+ + S +
Sbjct: 227 SAWFYHRWLLGAGSGRCELSVEKSTV 252
>pdb|3C72|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor
Length = 334
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 15 SAYMELRWVRGRGKGKCELNFKPSMI 40
SA+ RW+ G G G+CEL+ + S +
Sbjct: 231 SAWFYHRWLLGAGSGRCELSVEKSTV 256
>pdb|3PZ1|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3
pdb|3PZ2|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3 And Lipid Substrate Ggpp
pdb|3PZ3|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms-Analogue 14
Length = 332
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 15 SAYMELRWVRGRGKGKCELNFKPSMI 40
SA+ RW+ G G G+CEL+ + S +
Sbjct: 229 SAWFYHRWLLGAGSGRCELSVEKSTV 254
>pdb|1I12|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
Length = 160
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/81 (18%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 110 DDESSKRLMV--PLLGNLAQRVVPVTPSNGQLVGFGRAVSDVGLTASIHDIMVIPSLRQM 167
+D K++M P++ + + + G ++ + + ++GL I DI V +
Sbjct: 53 NDNEDKKIMQYNPMV--IVDKRTETVAATGNIIIERKIIHELGLCGHIEDIAVNSKYQGQ 110
Query: 168 GIGRMIVQRILRFVNFQYNKF 188
G+G++++ +++ + F Y +
Sbjct: 111 GLGKLLIDQLVT-IGFDYGCY 130
>pdb|1I1D|A Chain A, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|B Chain B, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|C Chain C, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|D Chain D, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
Length = 161
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/81 (18%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 110 DDESSKRLMV--PLLGNLAQRVVPVTPSNGQLVGFGRAVSDVGLTASIHDIMVIPSLRQM 167
+D K++M P++ + + + G ++ + + ++GL I DI V +
Sbjct: 54 NDNEDKKIMQYNPMV--IVDKRTETVAATGNIIIERKIIHELGLCGHIEDIAVNSKYQGQ 111
Query: 168 GIGRMIVQRILRFVNFQYNKF 188
G+G++++ +++ + F Y +
Sbjct: 112 GLGKLLIDQLVT-IGFDYGCY 131
>pdb|1I21|A Chain A, Crystal Structure Of Yeast Gna1
pdb|1I21|B Chain B, Crystal Structure Of Yeast Gna1
pdb|1I21|M Chain M, Crystal Structure Of Yeast Gna1
pdb|1I21|N Chain N, Crystal Structure Of Yeast Gna1
pdb|1I21|X Chain X, Crystal Structure Of Yeast Gna1
pdb|1I21|Y Chain Y, Crystal Structure Of Yeast Gna1
Length = 159
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/61 (18%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 125 LAQRVVPVTPSNGQLVGFGRAVSDVGLTASIHDIMVIPSLRQMGIGRMIVQRILRFVNFQ 184
+ + + G ++ + + ++GL I DI V + G+G++++ +++ + F
Sbjct: 67 IVDKRTETVAATGNIIIERKIIHELGLCGHIEDIAVNSKYQGQGLGKLLIDQLVT-IGFD 125
Query: 185 Y 185
Y
Sbjct: 126 Y 126
>pdb|2ATR|A Chain A, Acetyltransferase, Gnat Family Protein Sp0256 From
Streptococcus Pneumoniae Tigr4
Length = 138
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 129 VVPVTPSNGQLVGFGRAVSDVGLTASIHDIMVIPSLRQMGIGRMIVQRIL 178
V+ + +VG R V D + + D++V+PS ++ GIG + + L
Sbjct: 43 VIYLALDGDAVVGLIRLVGDGFSSVFVQDLIVLPSYQRQGIGSSLXKEAL 92
>pdb|3M1U|A Chain A, Crystal Structure Of A Putative Gamma-D-Glutamyl-L-Diamino
Acid Endopeptidase (Dvu_0896) From Desulfovibrio
Vulgaris Hildenborough At 1.75 A Resolution
pdb|3M1U|B Chain B, Crystal Structure Of A Putative Gamma-D-Glutamyl-L-Diamino
Acid Endopeptidase (Dvu_0896) From Desulfovibrio
Vulgaris Hildenborough At 1.75 A Resolution
Length = 434
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 12/56 (21%)
Query: 117 LMVPLL---GNLAQRVVPVTPSN---------GQLVGFGRAVSDVGLTASIHDIMV 160
++VP+L G AQ+ VP+TP N GQ G+G D ++++ D+
Sbjct: 257 VVVPVLLTSGEAAQKPVPLTPGNXAELGNRXXGQPYGWGGLYEDRDCSSTLRDLFT 312
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.142 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,736,457
Number of Sequences: 62578
Number of extensions: 161325
Number of successful extensions: 376
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 368
Number of HSP's gapped (non-prelim): 16
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)