BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029297
(195 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q39244|RU1A_ARATH U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana GN=U1A
PE=1 SV=1
Length = 250
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 132 QLPFDAAARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLV 186
Q+P+ +P P PP+ + L+V+ LP ++T + +F + G+KEVR++
Sbjct: 157 QVPYPGGMKPNMPEAPAPPN--NILFVQNLPHETTPMVLQMLFCQYQGFKEVRMI 209
>sp|Q9W6I1|RBPMS_CHICK RNA-binding protein with multiple splicing OS=Gallus gallus
GN=RBPMS PE=2 SV=1
Length = 200
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 155 TLYVEGLPADSTKREVAHIFRPFVGYK 181
TL+V GLP D RE+ +FRPF GY+
Sbjct: 23 TLFVSGLPVDIKPRELYLLFRPFKGYE 49
>sp|Q6ZRY4|RBPS2_HUMAN RNA-binding protein with multiple splicing 2 OS=Homo sapiens
GN=RBPMS2 PE=2 SV=1
Length = 209
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 155 TLYVEGLPADSTKREVAHIFRPFVGYK 181
TL+V GLP D RE+ +FRPF GY+
Sbjct: 32 TLFVSGLPVDIKPRELYLLFRPFKGYE 58
>sp|Q8VC52|RBPS2_MOUSE RNA-binding protein with multiple splicing 2 OS=Mus musculus
GN=Rbpms2 PE=1 SV=1
Length = 206
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 155 TLYVEGLPADSTKREVAHIFRPFVGYK 181
TL+V GLP D RE+ +FRPF GY+
Sbjct: 26 TLFVSGLPVDIKPRELYLLFRPFKGYE 52
>sp|Q93062|RBPMS_HUMAN RNA-binding protein with multiple splicing OS=Homo sapiens GN=RBPMS
PE=1 SV=1
Length = 196
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 155 TLYVEGLPADSTKREVAHIFRPFVGYK 181
TL+V GLP D RE+ +FRPF GY+
Sbjct: 25 TLFVSGLPLDIKPRELYLLFRPFKGYE 51
>sp|Q9WVB0|RBPMS_MOUSE RNA-binding protein with multiple splicing OS=Mus musculus GN=Rbpms
PE=2 SV=2
Length = 197
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 155 TLYVEGLPADSTKREVAHIFRPFVGYK 181
TL+V GLP D RE+ +FRPF GY+
Sbjct: 25 TLFVSGLPLDIKPRELYLLFRPFKGYE 51
>sp|Q9YGP5|RBPMS_XENLA RNA-binding protein with multiple splicing OS=Xenopus laevis
GN=rbpms PE=2 SV=1
Length = 196
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 155 TLYVEGLPADSTKREVAHIFRPFVGYK 181
TL+V GLP D RE+ +FRPF GY+
Sbjct: 21 TLFVSGLPIDIKPRELYLLFRPFKGYE 47
>sp|Q10MR0|RU2B_ORYSJ U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp.
japonica GN=Os03g0298800 PE=2 SV=1
Length = 232
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 147 PLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLV 186
P PP+ + L+++ LPA++T + +F+ + G++EVR++
Sbjct: 153 PAPPN--NILFIQNLPAETTSMMLQILFQQYPGFREVRMI 190
>sp|B8AM21|RU2B_ORYSI U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp.
indica GN=OsI_11177 PE=3 SV=1
Length = 232
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 147 PLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLV 186
P PP+ + L+++ LPA++T + +F+ + G++EVR++
Sbjct: 153 PAPPN--NILFIQNLPAETTSMMLQILFQQYPGFREVRMI 190
>sp|Q0DKM4|RU1A_ORYSJ U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp.
japonica GN=Os05g0154800 PE=3 SV=1
Length = 253
Score = 35.0 bits (79), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 132 QLPFDAAARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLV 186
QLPF A + + +P ++ L+V+ LP ++T + +F + G+KEVR+V
Sbjct: 160 QLPFAGAQKVMMPEIIVP---NNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMV 211
>sp|A2Y0J7|RU1A_ORYSI U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica
GN=OsI_18512 PE=3 SV=1
Length = 253
Score = 35.0 bits (79), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 132 QLPFDAAARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLV 186
QLPF A + + +P ++ L+V+ LP ++T + +F + G+KEVR+V
Sbjct: 160 QLPFAGAQKVMMPEIIVP---NNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMV 211
>sp|O22922|RU2B1_ARATH U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana
GN=U2B'' PE=1 SV=1
Length = 232
Score = 34.3 bits (77), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 142 GHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLV 186
G ET+P ++ L+++ LP ++T + +F + G+KE+R++
Sbjct: 150 GQETMP----PNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMI 190
>sp|Q8ITY4|PM14_CAEEL Pre-mRNA branch site p14-like protein OS=Caenorhabditis elegans
GN=C50D2.5 PE=3 SV=2
Length = 138
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 147 PLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRL 185
LPP+ + LY++ LP T E+ IF F +++R+
Sbjct: 12 KLPPEVNRILYIKNLPYKITTEEMYEIFGKFGAVRQIRV 50
>sp|Q9FMP4|PM14_ARATH Pre-mRNA branch site p14-like protein OS=Arabidopsis thaliana
GN=At5g12190 PE=2 SV=1
Length = 124
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 148 LPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRL 185
LPP+ + LYV LP + T E+ IF + +++R+
Sbjct: 13 LPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRI 50
>sp|Q0AFF1|ACSA_NITEC Acetyl-coenzyme A synthetase OS=Nitrosomonas eutropha (strain C91)
GN=acsA PE=3 SV=1
Length = 655
Score = 32.3 bits (72), Expect = 2.3, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 133 LPFDAAARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPF 177
+P A+PG TLPLP ++ + GLPA+ K I RPF
Sbjct: 431 IPGAIPAKPGSCTLPLPGIDAAVVDETGLPAEQGKGGFLVIKRPF 475
>sp|Q01617|CPO_DROME Protein couch potato OS=Drosophila melanogaster GN=cpo PE=2 SV=3
Length = 738
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 155 TLYVEGLPADSTKREVAHIFRPFVGYK 181
TL+V GLP D+ RE+ +FR + GY+
Sbjct: 452 TLFVSGLPMDAKPRELYLLFRAYEGYE 478
>sp|Q9CQI7|RU2B_MOUSE U2 small nuclear ribonucleoprotein B'' OS=Mus musculus GN=Snrpb2
PE=2 SV=1
Length = 225
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 139 ARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLV 186
A P + PP+ L++ LP ++ + ++ +F F G+KEVRLV
Sbjct: 138 AAPNPQVPDYPPN--YILFLNNLPEETNEMMLSMLFNQFPGFKEVRLV 183
>sp|Q5U259|ELV1B_XENLA ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-b PE=1 SV=1
Length = 326
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 139 ARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKES 190
ARP ET+ + LY+ GLP T+++V +F PF R+++ ++
Sbjct: 96 ARPSSETIK-----DANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQA 142
>sp|P08579|RU2B_HUMAN U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens GN=SNRPB2
PE=1 SV=1
Length = 225
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 149 PPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLV 186
PP+ L++ LP ++ + ++ +F F G+KEVRLV
Sbjct: 148 PPNY--ILFLNNLPEETNEMMLSMLFNQFPGFKEVRLV 183
>sp|P13846|DPOL_HHBV Protein P OS=Heron hepatitis B virus GN=P PE=3 SV=1
Length = 788
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 79 TSGEASAFSGDRLRRAVPGGVTRLPVSDPSVTGRHGATGPDLVQNLRSSSIDD 131
T+ S DR RR GV + +PS T R+G T V R+SS++D
Sbjct: 288 TAAHPSTHHVDRRRRQKGQGVLQAISREPSETRRNGTTSHHRVARCRTSSVED 340
>sp|Q9VRV7|PM14_DROME Pre-mRNA branch site p14-like protein OS=Drosophila melanogaster
GN=CG13298 PE=2 SV=1
Length = 121
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 146 LPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRL 185
+ LPP+ + LYV LP T E+ IF F +++R+
Sbjct: 7 IRLPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRV 46
>sp|Q8IWA4|MFN1_HUMAN Mitofusin-1 OS=Homo sapiens GN=MFN1 PE=1 SV=2
Length = 741
Score = 31.2 bits (69), Expect = 4.3, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 44 LSQDDDLGELQPLKDT-STIGSAYDR-YLQSAQYSSFTSGEASAFSGDRLRRAVPGGVTR 101
++ +DDL E+Q KD S IG R +++ A + +SG++S + + +P G+
Sbjct: 48 IATEDDLVEMQGYKDKLSIIGEVLSRRHMKVAFFGRTSSGKSSVINAMLWDKVLPSGIGH 107
Query: 102 LPVSDPSVTGRHG 114
+ SV G G
Sbjct: 108 ITNCFLSVEGTDG 120
>sp|O15033|K0317_HUMAN Protein KIAA0317 OS=Homo sapiens GN=KIAA0317 PE=2 SV=3
Length = 823
Score = 30.4 bits (67), Expect = 7.3, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 23 PRSDYDLPPSEVLSRHDMHNYLSQDDDLGELQPLKDTSTIGSAYDRYLQS 72
PR +YD P + +S D HNY +LG P ++ ST G ++++ + S
Sbjct: 191 PRDEYDNPTNNSMSLRDEHNYTLSIHELG---PQEEEST-GVSFEKSVTS 236
>sp|Q6GLB5|ELAV1_XENTR ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1
Length = 326
Score = 30.4 bits (67), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 137 AAARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKES 190
+ ARP E++ + LY+ GLP T+++V +F PF R+++ ++
Sbjct: 94 SVARPSSESIK-----DANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQA 142
>sp|Q1JQ73|ELV1A_XENLA ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-a PE=1 SV=1
Length = 337
Score = 30.4 bits (67), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 20/149 (13%)
Query: 42 NYLSQDDDLGELQPLKDTSTIGSAYDRYLQSAQYSSFTSGEASAFSGDRLRRAVPGGVTR 101
NYL Q+ EL+ L S+IG L + + F +S G L G V
Sbjct: 25 NYLPQNMTQDELRSL--FSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGY---GFVNY 79
Query: 102 LPVSDPSVTGRHGATGPDLVQNLRSSSIDDQLPFDAAARPGHETLPLPPDASSTLYVEGL 161
L D + + LR S ++ F ARP E++ + LY+ GL
Sbjct: 80 LNAKDAE-------RAINTLNGLRLQSKTIKVSF---ARPSSESIK-----DANLYISGL 124
Query: 162 PADSTKREVAHIFRPFVGYKEVRLVIKES 190
P T+++V +F PF R+++ ++
Sbjct: 125 PRTMTQKDVEDMFLPFGHIINSRVLVDQA 153
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,790,230
Number of Sequences: 539616
Number of extensions: 3152494
Number of successful extensions: 6218
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 6197
Number of HSP's gapped (non-prelim): 38
length of query: 195
length of database: 191,569,459
effective HSP length: 111
effective length of query: 84
effective length of database: 131,672,083
effective search space: 11060454972
effective search space used: 11060454972
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)