Query 029297
Match_columns 195
No_of_seqs 134 out of 246
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 10:38:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029297.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029297hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4206 Spliceosomal protein s 98.8 7.1E-09 1.5E-13 90.1 5.0 44 145-190 140-183 (221)
2 KOG0114 Predicted RNA-binding 97.9 1.3E-05 2.8E-10 64.6 4.7 44 145-188 10-53 (124)
3 PF00076 RRM_1: RNA recognitio 97.6 7.8E-05 1.7E-09 49.0 3.3 33 156-188 1-33 (70)
4 KOG1457 RNA binding protein (c 97.4 5.8E-05 1.3E-09 67.4 1.6 38 152-189 209-246 (284)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 97.2 0.00056 1.2E-08 58.7 4.7 37 153-189 269-305 (352)
6 PLN03134 glycine-rich RNA-bind 97.0 0.0018 3.9E-08 51.7 5.8 37 153-189 34-70 (144)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 96.9 0.00099 2.1E-08 61.7 4.4 40 148-189 391-432 (481)
8 smart00362 RRM_2 RNA recogniti 96.9 0.0016 3.5E-08 41.2 3.9 35 155-189 1-35 (72)
9 KOG1457 RNA binding protein (c 96.9 0.00087 1.9E-08 60.1 3.3 36 150-185 31-66 (284)
10 COG0724 RNA-binding proteins ( 96.5 0.0035 7.7E-08 47.9 4.2 37 153-189 115-151 (306)
11 TIGR01659 sex-lethal sex-letha 96.4 0.0057 1.2E-07 55.5 5.2 36 153-188 107-142 (346)
12 PF14259 RRM_6: RNA recognitio 96.3 0.0065 1.4E-07 40.8 4.0 34 156-189 1-34 (70)
13 TIGR01642 U2AF_lg U2 snRNP aux 96.2 0.0064 1.4E-07 55.1 4.6 38 152-189 294-331 (509)
14 TIGR01659 sex-lethal sex-letha 96.1 0.0072 1.6E-07 54.9 4.2 37 153-189 193-229 (346)
15 TIGR01622 SF-CC1 splicing fact 95.9 0.011 2.3E-07 53.1 4.6 37 153-189 186-222 (457)
16 cd00590 RRM RRM (RNA recogniti 95.7 0.015 3.2E-07 36.9 3.5 35 155-189 1-35 (74)
17 TIGR01622 SF-CC1 splicing fact 95.7 0.013 2.8E-07 52.6 4.3 36 153-188 89-124 (457)
18 TIGR01649 hnRNP-L_PTB hnRNP-L/ 95.5 0.017 3.7E-07 53.6 4.5 36 153-188 275-311 (481)
19 TIGR01648 hnRNP-R-Q heterogene 95.4 0.029 6.2E-07 54.8 5.8 42 147-188 52-93 (578)
20 TIGR01648 hnRNP-R-Q heterogene 94.5 0.039 8.5E-07 53.9 3.9 34 153-186 233-268 (578)
21 TIGR01645 half-pint poly-U bin 94.4 0.053 1.2E-06 53.4 4.5 37 153-189 204-240 (612)
22 KOG0127 Nucleolar protein fibr 94.4 0.035 7.6E-07 54.9 3.3 36 154-189 293-328 (678)
23 TIGR01661 ELAV_HUD_SF ELAV/HuD 94.2 0.069 1.5E-06 46.0 4.3 37 153-189 89-125 (352)
24 KOG0117 Heterogeneous nuclear 94.1 0.03 6.6E-07 54.0 2.3 32 153-184 259-290 (506)
25 smart00360 RRM RNA recognition 93.9 0.066 1.4E-06 33.5 2.9 32 158-189 1-32 (71)
26 TIGR01628 PABP-1234 polyadenyl 93.4 0.11 2.5E-06 48.3 4.6 37 153-189 285-321 (562)
27 TIGR01628 PABP-1234 polyadenyl 92.5 0.17 3.7E-06 47.2 4.4 37 153-189 178-214 (562)
28 TIGR01645 half-pint poly-U bin 91.7 0.24 5.3E-06 48.9 4.6 36 153-188 107-142 (612)
29 TIGR01642 U2AF_lg U2 snRNP aux 91.3 0.2 4.3E-06 45.6 3.4 25 153-177 175-199 (509)
30 KOG0113 U1 small nuclear ribon 90.4 0.26 5.6E-06 45.8 3.2 38 151-188 99-136 (335)
31 KOG0145 RNA-binding protein EL 89.6 0.22 4.8E-06 46.0 2.2 34 150-185 126-159 (360)
32 KOG0122 Translation initiation 88.6 0.56 1.2E-05 42.5 4.0 37 153-189 189-225 (270)
33 KOG0116 RasGAP SH3 binding pro 85.3 0.6 1.3E-05 44.3 2.4 35 154-188 289-323 (419)
34 KOG0144 RNA-binding protein CU 83.8 0.4 8.7E-06 46.5 0.5 42 146-189 119-160 (510)
35 KOG0415 Predicted peptidyl pro 83.5 0.98 2.1E-05 43.3 2.9 43 147-191 235-277 (479)
36 PF08777 RRM_3: RNA binding mo 81.5 1.5 3.4E-05 33.6 2.9 30 155-187 3-32 (105)
37 KOG4660 Protein Mei2, essentia 81.4 1.4 3E-05 43.5 3.1 38 152-189 74-111 (549)
38 KOG0533 RRM motif-containing p 79.9 1.5 3.2E-05 39.0 2.6 32 154-188 84-115 (243)
39 KOG0144 RNA-binding protein CU 79.8 1.4 3.1E-05 42.9 2.6 38 155-192 36-73 (510)
40 KOG0130 RNA-binding protein RB 79.4 1.7 3.8E-05 36.9 2.7 34 153-186 72-105 (170)
41 KOG0110 RNA-binding protein (R 79.1 1.2 2.5E-05 45.2 1.9 36 153-188 613-648 (725)
42 KOG4212 RNA-binding protein hn 78.2 6.9 0.00015 38.6 6.7 25 153-177 536-560 (608)
43 KOG0132 RNA polymerase II C-te 75.9 2.3 5E-05 43.9 3.0 39 152-190 420-458 (894)
44 KOG1548 Transcription elongati 75.7 2.7 5.8E-05 39.9 3.1 30 150-179 131-160 (382)
45 KOG1855 Predicted RNA-binding 75.3 3.9 8.4E-05 39.8 4.1 35 153-187 231-265 (484)
46 KOG0121 Nuclear cap-binding pr 74.5 2.6 5.6E-05 35.5 2.5 33 153-185 36-68 (153)
47 KOG0108 mRNA cleavage and poly 72.8 3.4 7.4E-05 39.5 3.1 36 154-189 19-54 (435)
48 KOG0148 Apoptosis-promoting RN 72.6 5.9 0.00013 36.8 4.5 36 153-188 164-199 (321)
49 KOG1190 Polypyrimidine tract-b 71.5 4.6 9.9E-05 39.3 3.6 37 153-189 28-64 (492)
50 KOG0117 Heterogeneous nuclear 70.8 4.3 9.3E-05 39.7 3.3 36 152-187 163-199 (506)
51 KOG0110 RNA-binding protein (R 67.0 4.7 0.0001 41.0 2.8 34 153-187 385-418 (725)
52 KOG0126 Predicted RNA-binding 65.9 2.4 5.1E-05 37.5 0.5 38 153-190 35-72 (219)
53 KOG0127 Nucleolar protein fibr 65.7 4.4 9.5E-05 40.7 2.3 33 154-186 118-150 (678)
54 KOG1190 Polypyrimidine tract-b 63.6 5.2 0.00011 39.0 2.3 30 149-181 412-441 (492)
55 KOG0153 Predicted RNA-binding 62.7 8.2 0.00018 36.7 3.4 39 152-190 227-265 (377)
56 PHA03008 hypothetical protein; 60.9 8.1 0.00018 34.5 2.9 40 151-190 19-58 (234)
57 KOG0145 RNA-binding protein EL 57.8 12 0.00025 35.0 3.4 36 156-191 44-79 (360)
58 PF14893 PNMA: PNMA 54.4 6.6 0.00014 36.3 1.3 23 153-175 18-40 (331)
59 PF08675 RNA_bind: RNA binding 54.2 15 0.00033 28.5 3.1 35 150-186 6-40 (87)
60 KOG0131 Splicing factor 3b, su 52.5 6.9 0.00015 34.4 1.1 32 146-179 91-122 (203)
61 KOG0109 RNA-binding protein LA 51.9 10 0.00023 35.5 2.2 36 153-188 78-113 (346)
62 KOG0129 Predicted RNA-binding 50.5 29 0.00063 34.4 5.0 26 153-178 259-284 (520)
63 KOG0128 RNA-binding protein SA 47.8 11 0.00023 39.4 1.7 38 153-190 736-773 (881)
64 KOG0123 Polyadenylate-binding 46.5 18 0.0004 33.5 2.9 34 156-189 79-112 (369)
65 KOG0129 Predicted RNA-binding 37.3 24 0.00053 34.9 2.3 28 149-176 366-393 (520)
66 KOG1995 Conserved Zn-finger pr 36.2 63 0.0014 30.7 4.7 26 153-178 66-91 (351)
67 KOG0151 Predicted splicing reg 36.0 79 0.0017 33.1 5.6 45 140-186 163-207 (877)
68 KOG4211 Splicing factor hnRNP- 35.9 57 0.0012 32.3 4.5 26 152-177 102-127 (510)
69 KOG4205 RNA-binding protein mu 35.1 83 0.0018 29.0 5.2 30 153-183 97-126 (311)
70 KOG0123 Polyadenylate-binding 33.7 34 0.00075 31.7 2.6 35 153-187 270-304 (369)
71 KOG1456 Heterogeneous nuclear 31.7 68 0.0015 31.4 4.2 42 148-192 403-446 (494)
72 PF04059 RRM_2: RNA recognitio 31.3 42 0.00091 25.9 2.3 22 155-176 3-24 (97)
73 KOG0226 RNA-binding proteins [ 30.8 26 0.00057 32.3 1.3 36 152-187 189-224 (290)
74 KOG0146 RNA-binding protein ET 27.6 49 0.0011 31.1 2.5 45 134-187 9-53 (371)
75 KOG0125 Ataxin 2-binding prote 24.3 1.7E+02 0.0037 28.1 5.4 38 152-189 95-132 (376)
76 PF10986 DUF2796: Protein of u 23.1 32 0.00069 28.9 0.4 20 166-186 130-149 (168)
77 KOG0112 Large RNA-binding prot 21.9 34 0.00074 36.1 0.4 34 152-185 371-404 (975)
78 PF11608 Limkain-b1: Limkain b 21.5 72 0.0016 25.0 2.0 27 153-179 2-32 (90)
79 KOG0148 Apoptosis-promoting RN 20.0 91 0.002 29.2 2.6 36 153-188 62-97 (321)
No 1
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.78 E-value=7.1e-09 Score=90.12 Aligned_cols=44 Identities=30% Similarity=0.675 Sum_probs=40.5
Q ss_pred CCCCCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecCc
Q 029297 145 TLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKES 190 (195)
Q Consensus 145 ~~~lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~ 190 (195)
....|| |+|||++|||++++.++|+.||.||+||||||||+.++
T Consensus 140 ~~~~pp--n~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~ 183 (221)
T KOG4206|consen 140 AQMAPP--NNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRS 183 (221)
T ss_pred ccCCCC--ceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCC
Confidence 445788 99999999999999999999999999999999999765
No 2
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.94 E-value=1.3e-05 Score=64.59 Aligned_cols=44 Identities=25% Similarity=0.545 Sum_probs=40.7
Q ss_pred CCCCCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 145 TLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 145 ~~~lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
...+||+.|.||||.|||.++|.++..+||..|--.++||+-..
T Consensus 10 ~~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~ 53 (124)
T KOG0114|consen 10 NIRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT 53 (124)
T ss_pred CCCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc
Confidence 56889999999999999999999999999999999999998643
No 3
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=97.56 E-value=7.8e-05 Score=48.97 Aligned_cols=33 Identities=30% Similarity=0.588 Sum_probs=31.7
Q ss_pred EEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 156 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 156 LFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
|||.|||.+||+++|..+|++|.....+++...
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~ 33 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN 33 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc
Confidence 799999999999999999999999999999985
No 4
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.42 E-value=5.8e-05 Score=67.42 Aligned_cols=38 Identities=21% Similarity=0.504 Sum_probs=35.3
Q ss_pred CCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+|++|||.||..+||+++|..||..|+||.-+|+-.+.
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~ 246 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARG 246 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCC
Confidence 59999999999999999999999999999999987643
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=97.16 E-value=0.00056 Score=58.73 Aligned_cols=37 Identities=19% Similarity=0.412 Sum_probs=34.3
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
.+.|||.|||.+||+++|.++|++|...++||++..+
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~ 305 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDL 305 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcC
Confidence 4579999999999999999999999999999999654
No 6
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=96.99 E-value=0.0018 Score=51.72 Aligned_cols=37 Identities=16% Similarity=0.414 Sum_probs=33.8
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+..|||.|||.++|+++|..+|.+|.-.++|+++...
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~ 70 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDR 70 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecC
Confidence 5679999999999999999999999999999998543
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=96.93 E-value=0.00099 Score=61.67 Aligned_cols=40 Identities=23% Similarity=0.421 Sum_probs=36.2
Q ss_pred CCCCCCceEEecCCCCcccHHHHHhhccCCCC--ceEEEeeecC
Q 029297 148 LPPDASSTLYVEGLPADSTKREVAHIFRPFVG--YKEVRLVIKE 189 (195)
Q Consensus 148 lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpG--FkEVRLVp~r 189 (195)
.|| +++|||.|||.++|+++|..||++|.. .+.|++.+.+
T Consensus 391 ~~p--s~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~ 432 (481)
T TIGR01649 391 QPP--SATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD 432 (481)
T ss_pred CCC--CcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCC
Confidence 356 899999999999999999999999987 8889998865
No 8
>smart00362 RRM_2 RNA recognition motif.
Probab=96.90 E-value=0.0016 Score=41.23 Aligned_cols=35 Identities=29% Similarity=0.534 Sum_probs=32.4
Q ss_pred eEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 155 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 155 ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+|||.|||.+++.++|..+|++|...+++++...+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~ 35 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT 35 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC
Confidence 48999999999999999999999999999998765
No 9
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=96.86 E-value=0.00087 Score=60.07 Aligned_cols=36 Identities=47% Similarity=0.831 Sum_probs=32.8
Q ss_pred CCCCceEEecCCCCcccHHHHHhhccCCCCceEEEe
Q 029297 150 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRL 185 (195)
Q Consensus 150 Pd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRL 185 (195)
|++-+||||.+||.|+..+||..||+.|+||...-|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslL 66 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLL 66 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceee
Confidence 567899999999999999999999999999987644
No 10
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=96.53 E-value=0.0035 Score=47.89 Aligned_cols=37 Identities=38% Similarity=0.617 Sum_probs=34.4
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|.+|.-...|+++-.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~ 151 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDR 151 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeecc
Confidence 6899999999999999999999999999999998754
No 11
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=96.37 E-value=0.0057 Score=55.52 Aligned_cols=36 Identities=31% Similarity=0.452 Sum_probs=33.9
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
+..|||.|||.++|+++|.++|.+|--.++|+++..
T Consensus 107 ~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d 142 (346)
T TIGR01659 107 GTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRD 142 (346)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec
Confidence 789999999999999999999999999999999864
No 12
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=96.32 E-value=0.0065 Score=40.81 Aligned_cols=34 Identities=26% Similarity=0.606 Sum_probs=28.1
Q ss_pred EEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 156 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 156 LFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
|||.|||.++|+++|..+|..|-=..+|++...+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~ 34 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNK 34 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEEST
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeee
Confidence 7999999999999999999999447789988764
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=96.21 E-value=0.0064 Score=55.14 Aligned_cols=38 Identities=16% Similarity=0.358 Sum_probs=34.7
Q ss_pred CCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
..+.|||.|||..+|+++|..||.+|-.++.|+++...
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~ 331 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDI 331 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC
Confidence 36789999999999999999999999999999998643
No 14
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=96.05 E-value=0.0072 Score=54.88 Aligned_cols=37 Identities=22% Similarity=0.405 Sum_probs=33.8
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+..|||.|||.++|+++|.++|.+|-..++|+++..+
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~ 229 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDK 229 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecC
Confidence 5679999999999999999999999999999998653
No 15
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=95.92 E-value=0.011 Score=53.09 Aligned_cols=37 Identities=32% Similarity=0.476 Sum_probs=34.3
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+.+|||.|||.++|+++|..+|.+|...+.|+++...
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~ 222 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDP 222 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC
Confidence 7899999999999999999999999999999998643
No 16
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=95.75 E-value=0.015 Score=36.89 Aligned_cols=35 Identities=34% Similarity=0.611 Sum_probs=31.1
Q ss_pred eEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 155 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 155 ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+|+|.|||..+++++|..+|++|...+.+.+...+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~ 35 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDK 35 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCC
Confidence 48999999999999999999999888888888654
No 17
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=95.72 E-value=0.013 Score=52.60 Aligned_cols=36 Identities=17% Similarity=0.321 Sum_probs=34.1
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
.++|||.|||.++|+++|..+|.+|...++|+++..
T Consensus 89 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d 124 (457)
T TIGR01622 89 DRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKD 124 (457)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeec
Confidence 789999999999999999999999999999999864
No 18
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=95.53 E-value=0.017 Score=53.56 Aligned_cols=36 Identities=19% Similarity=0.318 Sum_probs=33.7
Q ss_pred CceEEecCCCC-cccHHHHHhhccCCCCceEEEeeec
Q 029297 153 SSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~-d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
+++|||.|||. .+|+++|..||.+|...++|+++..
T Consensus 275 ~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~ 311 (481)
T TIGR01649 275 GSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN 311 (481)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC
Confidence 88999999997 6999999999999999999999864
No 19
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=95.43 E-value=0.029 Score=54.80 Aligned_cols=42 Identities=21% Similarity=0.398 Sum_probs=36.4
Q ss_pred CCCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 147 PLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 147 ~lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
..+|+....|||.|||.++|+++|..+|.+|--.++|||+..
T Consensus 52 ~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D 93 (578)
T TIGR01648 52 GVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD 93 (578)
T ss_pred CCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC
Confidence 334555678999999999999999999999999999999864
No 20
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=94.49 E-value=0.039 Score=53.86 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=29.9
Q ss_pred CceEEecCCCCcccHHHHHhhccCC--CCceEEEee
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPF--VGYKEVRLV 186 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qF--pGFkEVRLV 186 (195)
+++|||.|||.++|+++|..+|.+| --.+.|+++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~ 268 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI 268 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee
Confidence 6899999999999999999999999 556666655
No 21
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=94.37 E-value=0.053 Score=53.42 Aligned_cols=37 Identities=16% Similarity=0.347 Sum_probs=34.6
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
.+.|||.|||.++++++|..+|++|...++||++...
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~ 240 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAP 240 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecC
Confidence 5789999999999999999999999999999999754
No 22
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=94.36 E-value=0.035 Score=54.87 Aligned_cols=36 Identities=31% Similarity=0.450 Sum_probs=33.7
Q ss_pred ceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 154 ~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++||.|||.+||+++|...|++|--.+-+++|.-.
T Consensus 293 ~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k 328 (678)
T KOG0127|consen 293 KTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDK 328 (678)
T ss_pred ceEEEecCCccccHHHHHHHHHhhccceeEEEEecc
Confidence 899999999999999999999999999999999643
No 23
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=94.16 E-value=0.069 Score=45.98 Aligned_cols=37 Identities=35% Similarity=0.628 Sum_probs=33.5
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+..|||.|||.++|+++|..+|++|...+.++++..+
T Consensus 89 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~ 125 (352)
T TIGR01661 89 GANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDN 125 (352)
T ss_pred cceEEECCccccCCHHHHHHHHhccCCEEEEEEEecC
Confidence 5579999999999999999999999999999987654
No 24
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=94.13 E-value=0.03 Score=53.98 Aligned_cols=32 Identities=25% Similarity=0.454 Sum_probs=27.3
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEE
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVR 184 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVR 184 (195)
-|+|||.||+.++|++.|+.+|++|--...|.
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVk 290 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVK 290 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEee
Confidence 68999999999999999999999994444443
No 25
>smart00360 RRM RNA recognition motif.
Probab=93.92 E-value=0.066 Score=33.46 Aligned_cols=32 Identities=38% Similarity=0.573 Sum_probs=28.7
Q ss_pred ecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 158 VEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 158 VQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
|.|||.++++++|..+|++|-..++|++...+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~ 32 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDK 32 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCC
Confidence 57999999999999999999889999888654
No 26
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=93.39 E-value=0.11 Score=48.34 Aligned_cols=37 Identities=19% Similarity=0.378 Sum_probs=33.7
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
...|||.|||.++|+++|.++|++|.-.++|+++...
T Consensus 285 ~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~ 321 (562)
T TIGR01628 285 GVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDE 321 (562)
T ss_pred CCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECC
Confidence 5679999999999999999999999999999998653
No 27
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=92.51 E-value=0.17 Score=47.25 Aligned_cols=37 Identities=16% Similarity=0.316 Sum_probs=33.7
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
...|||.|||.++|+++|..+|.+|....+|+++...
T Consensus 178 ~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~ 214 (562)
T TIGR01628 178 FTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG 214 (562)
T ss_pred CCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC
Confidence 5679999999999999999999999999999998654
No 28
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=91.71 E-value=0.24 Score=48.92 Aligned_cols=36 Identities=17% Similarity=0.358 Sum_probs=33.5
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
...|||.|||.++|+++|..+|.+|--.++|+++..
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D 142 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWD 142 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeec
Confidence 567999999999999999999999999999999864
No 29
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=91.31 E-value=0.2 Score=45.56 Aligned_cols=25 Identities=28% Similarity=0.632 Sum_probs=23.3
Q ss_pred CceEEecCCCCcccHHHHHhhccCC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPF 177 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qF 177 (195)
.++|||.|||.++|+++|..+|.+|
T Consensus 175 ~r~lyVgnLp~~~t~~~l~~~F~~~ 199 (509)
T TIGR01642 175 ARRLYVGGIPPEFVEEAVVDFFNDL 199 (509)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHH
Confidence 6789999999999999999999874
No 30
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=90.36 E-value=0.26 Score=45.78 Aligned_cols=38 Identities=29% Similarity=0.442 Sum_probs=35.6
Q ss_pred CCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 151 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 151 d~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
|+=+||||.-|+.++++..|...|..|-=.|.||||--
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d 136 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRD 136 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeee
Confidence 55899999999999999999999999999999999964
No 31
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=89.61 E-value=0.22 Score=45.98 Aligned_cols=34 Identities=44% Similarity=0.757 Sum_probs=28.4
Q ss_pred CCCCceEEecCCCCcccHHHHHhhccCCCCceEEEe
Q 029297 150 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRL 185 (195)
Q Consensus 150 Pd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRL 185 (195)
.|+| |||.+||...|+.||+.||++|--....|+
T Consensus 126 k~aN--LYvSGlPktMtqkelE~iFs~fGrIItSRi 159 (360)
T KOG0145|consen 126 KDAN--LYVSGLPKTMTQKELEQIFSPFGRIITSRI 159 (360)
T ss_pred cccc--eEEecCCccchHHHHHHHHHHhhhhhhhhh
Confidence 4456 999999999999999999999876655554
No 32
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=88.64 E-value=0.56 Score=42.54 Aligned_cols=37 Identities=27% Similarity=0.450 Sum_probs=33.9
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|=|.||++++++.+|.+||.+|-.+..|-|+..+
T Consensus 189 ~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK 225 (270)
T KOG0122|consen 189 EATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDK 225 (270)
T ss_pred cceeEEecCccccChhHHHHHhhccCccceeEEEEcc
Confidence 7799999999999999999999999999999887544
No 33
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=85.27 E-value=0.6 Score=44.32 Aligned_cols=35 Identities=29% Similarity=0.554 Sum_probs=30.7
Q ss_pred ceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 154 ~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
..|||.|||.++|..+|++.|.+|---++.|+--.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr 323 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVR 323 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEe
Confidence 34999999999999999999999988888887543
No 34
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=83.79 E-value=0.4 Score=46.50 Aligned_cols=42 Identities=21% Similarity=0.293 Sum_probs=36.2
Q ss_pred CCCCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 146 LPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 146 ~~lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+.++. ++-|||.-|+..|||.|+.+||.+|-=.++|++....
T Consensus 119 er~~~--e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~ 160 (510)
T KOG0144|consen 119 ERIVE--ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP 160 (510)
T ss_pred hcccc--chhhhhhhccccccHHHHHHHHHhhCccchhhheecc
Confidence 44555 6679999999999999999999999999999988644
No 35
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=83.50 E-value=0.98 Score=43.27 Aligned_cols=43 Identities=21% Similarity=0.333 Sum_probs=37.4
Q ss_pred CCCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecCcc
Q 029297 147 PLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESK 191 (195)
Q Consensus 147 ~lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~ 191 (195)
-.|| .|+|||=.|.+-+|.+.|+.||+.|--.+.+-+|--+.+
T Consensus 235 ~~PP--eNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~kt 277 (479)
T KOG0415|consen 235 VKPP--ENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKT 277 (479)
T ss_pred cCCC--cceEEEEecCCcccccchhhHHhhcccceeeeEEecccc
Confidence 4566 899999999999999999999999999999888865543
No 36
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=81.55 E-value=1.5 Score=33.63 Aligned_cols=30 Identities=27% Similarity=0.416 Sum_probs=20.2
Q ss_pred eEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297 155 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI 187 (195)
Q Consensus 155 ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp 187 (195)
||.|.+++..|+.++|..+|++|. +|..|-
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g---~V~yVD 32 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFG---EVAYVD 32 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS-----EEEEE
T ss_pred EEEEecCCCCcCHHHHHHHHHhcC---CcceEE
Confidence 899999999999999999999876 666664
No 37
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=81.40 E-value=1.4 Score=43.52 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=34.1
Q ss_pred CCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+..+|+|-|||..+|+++|..||+.|---||||+-+.+
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~ 111 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK 111 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc
Confidence 37899999999999999999999999999998876643
No 38
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=79.93 E-value=1.5 Score=39.05 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=26.9
Q ss_pred ceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 154 ~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
..|.|.|||..++.++|.+||.+|. ++.+|..
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~---~~~r~~v 115 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFG---ELKRVAV 115 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhc---cceEEee
Confidence 5799999999999999999999887 4555443
No 39
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=79.82 E-value=1.4 Score=42.88 Aligned_cols=38 Identities=18% Similarity=0.454 Sum_probs=34.8
Q ss_pred eEEecCCCCcccHHHHHhhccCCCCceEEEeeecCccC
Q 029297 155 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKL 192 (195)
Q Consensus 155 ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~ 192 (195)
-|||-.+|..+||.+|..||++|----||-++..+.+.
T Consensus 36 KlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~ 73 (510)
T KOG0144|consen 36 KLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTG 73 (510)
T ss_pred hheeccCCccccHHHHHHHHHHhCceeEEEeecccccC
Confidence 39999999999999999999999999999999877653
No 40
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=79.41 E-value=1.7 Score=36.91 Aligned_cols=34 Identities=18% Similarity=0.411 Sum_probs=30.9
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEee
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLV 186 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLV 186 (195)
--||||.++-+++|++++...|..|--.|++.|-
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLN 105 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLN 105 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeec
Confidence 5799999999999999999999999888888763
No 41
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=79.09 E-value=1.2 Score=45.23 Aligned_cols=36 Identities=39% Similarity=0.609 Sum_probs=32.3
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
..=|+|+|||...|.+++..||..|--++.|||=.+
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK 648 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKK 648 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchh
Confidence 345899999999999999999999999999998654
No 42
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=78.20 E-value=6.9 Score=38.64 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.2
Q ss_pred CceEEecCCCCcccHHHHHhhccCC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPF 177 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qF 177 (195)
.-++||.|||.+||=.+|..-|+.|
T Consensus 536 a~qIiirNlP~dfTWqmlrDKfre~ 560 (608)
T KOG4212|consen 536 ACQIIIRNLPFDFTWQMLRDKFREI 560 (608)
T ss_pred ccEEEEecCCccccHHHHHHHHHhc
Confidence 3459999999999999999999866
No 43
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=75.91 E-value=2.3 Score=43.86 Aligned_cols=39 Identities=28% Similarity=0.563 Sum_probs=36.0
Q ss_pred CCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecCc
Q 029297 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKES 190 (195)
Q Consensus 152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~ 190 (195)
.+.||||-.||..+++.+|..+|..|---..|-|++.|.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~ 458 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRG 458 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCc
Confidence 578999999999999999999999999999999998664
No 44
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=75.67 E-value=2.7 Score=39.86 Aligned_cols=30 Identities=33% Similarity=0.529 Sum_probs=25.3
Q ss_pred CCCCceEEecCCCCcccHHHHHhhccCCCC
Q 029297 150 PDASSTLYVEGLPADSTKREVAHIFRPFVG 179 (195)
Q Consensus 150 Pd~N~ILFVQNLP~d~T~~eL~~LF~qFpG 179 (195)
|..|.-+||+|||.++|-+|+..+|..+-.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGi 160 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGI 160 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcce
Confidence 445667999999999999999999986543
No 45
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=75.34 E-value=3.9 Score=39.83 Aligned_cols=35 Identities=29% Similarity=0.457 Sum_probs=32.5
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI 187 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp 187 (195)
.+||+++|||.+-.-+-|..||..+--.|.||+..
T Consensus 231 srtivaenLP~Dh~~enl~kiFg~~G~IksIRIck 265 (484)
T KOG1855|consen 231 SRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICK 265 (484)
T ss_pred cceEEEecCCcchHHHHHHHHhhcccceeeeeecC
Confidence 79999999999988899999999999999999874
No 46
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=74.48 E-value=2.6 Score=35.49 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=27.7
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEe
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRL 185 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRL 185 (195)
+.+|||.||..-+|+++|.+||...---+.|=|
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~cG~irriiM 68 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIM 68 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhccchheeEe
Confidence 889999999999999999999997655554433
No 47
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=72.80 E-value=3.4 Score=39.49 Aligned_cols=36 Identities=22% Similarity=0.408 Sum_probs=32.9
Q ss_pred ceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 154 ~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
..+||.|+|.++|+++|..||...-.-..+|+|--+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~ 54 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDR 54 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccc
Confidence 569999999999999999999999999999998544
No 48
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=72.61 E-value=5.9 Score=36.78 Aligned_cols=36 Identities=25% Similarity=0.466 Sum_probs=33.6
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
|-+.||-|++..+|+++|...|.+|--..|||+-+-
T Consensus 164 NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~ 199 (321)
T KOG0148|consen 164 NTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD 199 (321)
T ss_pred CceEEeCCcCccccHHHHHHhcccCCcceEEEEecc
Confidence 889999999999999999999999999999998764
No 49
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=71.49 E-value=4.6 Score=39.30 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=32.4
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|.+.|||.+|||+||-.|+.+|---..+.+..+.
T Consensus 28 SkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGk 64 (492)
T KOG1190|consen 28 SKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGK 64 (492)
T ss_pred cceeEeccCCccccHHHHHHhcccccceeeeeeeccc
Confidence 8999999999999999999999999877777666543
No 50
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=70.79 E-value=4.3 Score=39.71 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=30.5
Q ss_pred CCceEEecCCCCcccHHHHHhhcc-CCCCceEEEeee
Q 029297 152 ASSTLYVEGLPADSTKREVAHIFR-PFVGYKEVRLVI 187 (195)
Q Consensus 152 ~N~ILFVQNLP~d~T~~eL~~LF~-qFpGFkEVRLVp 187 (195)
+|+-|||-|+|.+.+++||.+-|. .-+|.+.|=|.+
T Consensus 163 an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~ 199 (506)
T KOG0117|consen 163 ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYP 199 (506)
T ss_pred ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEec
Confidence 488999999999999998776666 459999998875
No 51
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=66.97 E-value=4.7 Score=41.04 Aligned_cols=34 Identities=26% Similarity=0.415 Sum_probs=31.6
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI 187 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp 187 (195)
+.++||.|||.+++.++|+++|..|.....| |.|
T Consensus 385 ~~vil~kNlpa~t~~~elt~~F~~fG~i~rv-llp 418 (725)
T KOG0110|consen 385 DTVILVKNLPAGTLSEELTEAFLRFGEIGRV-LLP 418 (725)
T ss_pred cceeeeccCccccccHHHHHHhhccccccee-ecC
Confidence 6899999999999999999999999999998 665
No 52
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=65.85 E-value=2.4 Score=37.48 Aligned_cols=38 Identities=21% Similarity=0.508 Sum_probs=34.8
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecCc
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKES 190 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~ 190 (195)
+--+||-|||.+.|+.+|-.+|+||---+.|.||.-+.
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~ 72 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKK 72 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCC
Confidence 56899999999999999999999999999999997554
No 53
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=65.72 E-value=4.4 Score=40.69 Aligned_cols=33 Identities=21% Similarity=0.363 Sum_probs=29.8
Q ss_pred ceEEecCCCCcccHHHHHhhccCCCCceEEEee
Q 029297 154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLV 186 (195)
Q Consensus 154 ~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLV 186 (195)
--|.|.|||-.|.+..|..+|++|--+.||-+=
T Consensus 118 ~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP 150 (678)
T KOG0127|consen 118 WRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIP 150 (678)
T ss_pred ceEEeecCCcccCcHHHHHHHhhcceEEEEEcc
Confidence 359999999999999999999999999998753
No 54
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=63.59 E-value=5.2 Score=38.95 Aligned_cols=30 Identities=27% Similarity=0.595 Sum_probs=26.5
Q ss_pred CCCCCceEEecCCCCcccHHHHHhhccCCCCce
Q 029297 149 PPDASSTLYVEGLPADSTKREVAHIFRPFVGYK 181 (195)
Q Consensus 149 PPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFk 181 (195)
|| +.+|.+.|+|++|++++|..+|. -+||.
T Consensus 412 Pp--satlHlsnip~svsee~lk~~f~-~~g~~ 441 (492)
T KOG1190|consen 412 PP--SATLHLSNIPPSVSEEDLKNLFQ-EPGGQ 441 (492)
T ss_pred Cc--hhheeeccCCcccchhHHHHhhh-cCCce
Confidence 78 99999999999999999999996 55553
No 55
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=62.73 E-value=8.2 Score=36.66 Aligned_cols=39 Identities=18% Similarity=0.464 Sum_probs=35.8
Q ss_pred CCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecCc
Q 029297 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKES 190 (195)
Q Consensus 152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~ 190 (195)
...+|||.+|-+++++.+|..-|-||-+.+.||+++.+.
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~ 265 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKG 265 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccc
Confidence 367999999999999999999999999999999998754
No 56
>PHA03008 hypothetical protein; Provisional
Probab=60.90 E-value=8.1 Score=34.50 Aligned_cols=40 Identities=10% Similarity=0.253 Sum_probs=36.4
Q ss_pred CCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecCc
Q 029297 151 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKES 190 (195)
Q Consensus 151 d~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~ 190 (195)
..+.++||.|+-.--....++..|..|..|+||=+||+..
T Consensus 19 ~~~d~~~~snit~~h~~n~i~~ff~~~d~~~~~ifvpg~~ 58 (234)
T PHA03008 19 EICDIAFISNITHIHDHNIIKIFFDKFDDFDEIIFVPGDI 58 (234)
T ss_pred ccccEEEEecccccccccHHHHHHhhccccceEEEccCCc
Confidence 4588999999998888889999999999999999999864
No 57
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=57.76 E-value=12 Score=35.02 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=32.1
Q ss_pred EEecCCCCcccHHHHHhhccCCCCceEEEeeecCcc
Q 029297 156 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESK 191 (195)
Q Consensus 156 LFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~ 191 (195)
|.|-=||+..|++||..||...--...|+||..+.+
T Consensus 44 LIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKit 79 (360)
T KOG0145|consen 44 LIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKIT 79 (360)
T ss_pred eeeeecccccCHHHHHHHhhcccceeeeeeeecccc
Confidence 778889999999999999999999999999976544
No 58
>PF14893 PNMA: PNMA
Probab=54.44 E-value=6.6 Score=36.30 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.3
Q ss_pred CceEEecCCCCcccHHHHHhhcc
Q 029297 153 SSTLYVEGLPADSTKREVAHIFR 175 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~ 175 (195)
.+-|+|-++|++|++.+|++..+
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~ 40 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQ 40 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHH
Confidence 78899999999999999888644
No 59
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=54.15 E-value=15 Score=28.50 Aligned_cols=35 Identities=17% Similarity=0.408 Sum_probs=23.2
Q ss_pred CCCCceEEecCCCCcccHHHHHhhccCCCCceEEEee
Q 029297 150 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLV 186 (195)
Q Consensus 150 Pd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLV 186 (195)
|.-.|+++|. .|.++...+|..||+.|- ...|-.|
T Consensus 6 P~RdHVFhlt-FPkeWK~~DI~qlFspfG-~I~VsWi 40 (87)
T PF08675_consen 6 PSRDHVFHLT-FPKEWKTSDIYQLFSPFG-QIYVSWI 40 (87)
T ss_dssp -SGCCEEEEE---TT--HHHHHHHCCCCC-CEEEEEE
T ss_pred CCcceEEEEe-CchHhhhhhHHHHhccCC-cEEEEEE
Confidence 3348899999 999999999999999884 3444443
No 60
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=52.53 E-value=6.9 Score=34.41 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=25.6
Q ss_pred CCCCCCCCceEEecCCCCcccHHHHHhhccCCCC
Q 029297 146 LPLPPDASSTLYVEGLPADSTKREVAHIFRPFVG 179 (195)
Q Consensus 146 ~~lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpG 179 (195)
..++- +.-|||+||-+++.+..|..+|+.|-=
T Consensus 91 ~nl~v--ganlfvgNLd~~vDe~~L~dtFsafG~ 122 (203)
T KOG0131|consen 91 KNLDV--GANLFVGNLDPEVDEKLLYDTFSAFGV 122 (203)
T ss_pred ccccc--cccccccccCcchhHHHHHHHHHhccc
Confidence 44554 344999999999999999999997643
No 61
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=51.94 E-value=10 Score=35.52 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=32.2
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
+-.|+|-||-..||..||...|..|.=-.|+.+|..
T Consensus 78 stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd 113 (346)
T KOG0109|consen 78 STKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD 113 (346)
T ss_pred ccccccCCCCccccCHHHhhhhcccCCceeeeeecc
Confidence 557999999999999999999999988888888753
No 62
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=50.52 E-value=29 Score=34.37 Aligned_cols=26 Identities=35% Similarity=0.560 Sum_probs=22.9
Q ss_pred CceEEecCCCCcccHHHHHhhccCCC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFV 178 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFp 178 (195)
++=.||-+||.++|+++|...|++|-
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FG 284 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFG 284 (520)
T ss_pred ccceeecCCCccccHHHHHhhccccc
Confidence 33489999999999999999999874
No 63
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=47.77 E-value=11 Score=39.37 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=34.8
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecCc
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKES 190 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~ 190 (195)
++.|||.|+|..+|+++|..||..+---+.+|+|..+.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~ 773 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA 773 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc
Confidence 78899999999999999999999999999999887654
No 64
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=46.49 E-value=18 Score=33.52 Aligned_cols=34 Identities=12% Similarity=0.321 Sum_probs=31.1
Q ss_pred EEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 156 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 156 LFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+||.||++++|...|..+|+.|---..|+++-.+
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~ 112 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE 112 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC
Confidence 9999999999999999999999999999887543
No 65
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=37.28 E-value=24 Score=34.89 Aligned_cols=28 Identities=39% Similarity=0.604 Sum_probs=24.7
Q ss_pred CCCCCceEEecCCCCcccHHHHHhhccC
Q 029297 149 PPDASSTLYVEGLPADSTKREVAHIFRP 176 (195)
Q Consensus 149 PPd~N~ILFVQNLP~d~T~~eL~~LF~q 176 (195)
|=|+.+|+||-+||--.|.+||.+||.+
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~ 393 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMED 393 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHH
Confidence 3345999999999999999999999984
No 66
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=36.18 E-value=63 Score=30.65 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=23.3
Q ss_pred CceEEecCCCCcccHHHHHhhccCCC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFV 178 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFp 178 (195)
|.++||++||..+|+.+|.+.|.|.-
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg 91 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCG 91 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcc
Confidence 78899999999999999999997643
No 67
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=36.01 E-value=79 Score=33.10 Aligned_cols=45 Identities=24% Similarity=0.368 Sum_probs=34.6
Q ss_pred CCCCCCCCCCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEee
Q 029297 140 RPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLV 186 (195)
Q Consensus 140 rp~~~~~~lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLV 186 (195)
+||.-+.--|- ..=|+|-||++.+++..|...|+.|-=.-.|++.
T Consensus 163 ~~gsfDdgDP~--TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKim 207 (877)
T KOG0151|consen 163 RPGSFDDGDPQ--TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIM 207 (877)
T ss_pred CCCcCCCCCCc--ccceeeecCCccccHHHHHHHhcccCcccceeee
Confidence 66664433343 3349999999999999999999998877777765
No 68
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=35.94 E-value=57 Score=32.33 Aligned_cols=26 Identities=19% Similarity=0.482 Sum_probs=22.9
Q ss_pred CCceEEecCCCCcccHHHHHhhccCC
Q 029297 152 ASSTLYVEGLPADSTKREVAHIFRPF 177 (195)
Q Consensus 152 ~N~ILFVQNLP~d~T~~eL~~LF~qF 177 (195)
.+.|+=+.+||-.||+++|.+.|.-.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL 127 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGL 127 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCC
Confidence 37899999999999999999998743
No 69
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=35.07 E-value=83 Score=29.01 Aligned_cols=30 Identities=27% Similarity=0.526 Sum_probs=26.0
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEE
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEV 183 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEV 183 (195)
.+-+||-+||.++++++|..-|.||- ..+.
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g-~v~~ 126 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFG-KVAD 126 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccc-eeEe
Confidence 67899999999999999999999876 4433
No 70
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=33.68 E-value=34 Score=31.75 Aligned_cols=35 Identities=20% Similarity=0.462 Sum_probs=31.8
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI 187 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp 187 (195)
...|+|+||...++.+.|..+|..|.-...+|+.-
T Consensus 270 ~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~ 304 (369)
T KOG0123|consen 270 GANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMV 304 (369)
T ss_pred ccccccccCccccchhHHHHHHhcccceeeEEEEe
Confidence 55699999999999999999999999888888875
No 71
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=31.66 E-value=68 Score=31.39 Aligned_cols=42 Identities=21% Similarity=0.232 Sum_probs=35.9
Q ss_pred CCCCCCceEEecCCCCcccHHHHHhhccC--CCCceEEEeeecCccC
Q 029297 148 LPPDASSTLYVEGLPADSTKREVAHIFRP--FVGYKEVRLVIKESKL 192 (195)
Q Consensus 148 lPPd~N~ILFVQNLP~d~T~~eL~~LF~q--FpGFkEVRLVp~r~~~ 192 (195)
.|| ++||..=|-|..+||+.|..||.. -+ +..||+.|.+..+
T Consensus 403 q~P--s~vLHffNaP~~vtEe~l~~i~nek~v~-~~svkvFp~kser 446 (494)
T KOG1456|consen 403 QPP--SNVLHFFNAPLGVTEEQLIGICNEKDVP-PTSVKVFPLKSER 446 (494)
T ss_pred cCC--cceeEEecCCCccCHHHHHHHhhhcCCC-cceEEeecccccc
Confidence 567 999999999999999999999973 34 8999999887654
No 72
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=31.25 E-value=42 Score=25.90 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=19.5
Q ss_pred eEEecCCCCcccHHHHHhhccC
Q 029297 155 TLYVEGLPADSTKREVAHIFRP 176 (195)
Q Consensus 155 ILFVQNLP~d~T~~eL~~LF~q 176 (195)
||-|.|+|...|+++|.+++..
T Consensus 3 TvMirNIPn~~t~~~L~~~l~~ 24 (97)
T PF04059_consen 3 TVMIRNIPNKYTQEMLIQILDE 24 (97)
T ss_pred eEEEecCCCCCCHHHHHHHHHH
Confidence 7899999999999999888763
No 73
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=30.82 E-value=26 Score=32.34 Aligned_cols=36 Identities=11% Similarity=0.361 Sum_probs=32.6
Q ss_pred CCceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI 187 (195)
Q Consensus 152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp 187 (195)
...-||+..|..++|.+.|...|.+||-|...+.|.
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviR 224 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIR 224 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccc
Confidence 355699999999999999999999999999998875
No 74
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=27.59 E-value=49 Score=31.12 Aligned_cols=45 Identities=27% Similarity=0.521 Sum_probs=37.5
Q ss_pred CcCccCCCCCCCCCCCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297 134 PFDAAARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI 187 (195)
Q Consensus 134 p~~~~~rp~~~~~~lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp 187 (195)
|.|+-+|++ . .+-|||--|...-.|+++..||..|--..||-...
T Consensus 9 padsesrg~-------~--drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlr 53 (371)
T KOG0146|consen 9 PADSESRGG-------D--DRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLR 53 (371)
T ss_pred ccccccCCc-------c--chhhhhhhhcccccHHHHHHHhcccCCcceeEEec
Confidence 567777774 1 45699999999999999999999999999987654
No 75
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=24.32 E-value=1.7e+02 Score=28.05 Aligned_cols=38 Identities=18% Similarity=0.358 Sum_probs=33.5
Q ss_pred CCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
.-|-|.|.|+|...-+-+|...|.+|---.+|-+|=.|
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE 132 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE 132 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc
Confidence 34689999999999999999999999999899888554
No 76
>PF10986 DUF2796: Protein of unknown function (DUF2796); InterPro: IPR021253 This bacterial family of proteins has no known function.
Probab=23.14 E-value=32 Score=28.87 Aligned_cols=20 Identities=15% Similarity=0.499 Sum_probs=15.1
Q ss_pred cHHHHHhhccCCCCceEEEee
Q 029297 166 TKREVAHIFRPFVGYKEVRLV 186 (195)
Q Consensus 166 T~~eL~~LF~qFpGFkEVRLV 186 (195)
+.-++. +|.+||++++|+..
T Consensus 130 ~~i~~~-~F~~FP~~e~i~Vq 149 (168)
T PF10986_consen 130 SSIDTQ-LFKAFPGTEKIDVQ 149 (168)
T ss_pred ceehhh-hHhhCCCccEEEEE
Confidence 344555 99999999988754
No 77
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=21.85 E-value=34 Score=36.15 Aligned_cols=34 Identities=26% Similarity=0.352 Sum_probs=30.4
Q ss_pred CCceEEecCCCCcccHHHHHhhccCCCCceEEEe
Q 029297 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRL 185 (195)
Q Consensus 152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRL 185 (195)
+|.+||+-||+..+++.+|...|..+--..+|++
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDi 404 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDI 404 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhcccccccc
Confidence 7999999999999999999999998866666665
No 78
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=21.48 E-value=72 Score=25.03 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=15.9
Q ss_pred CceEEecCCCCcccHHH----HHhhccCCCC
Q 029297 153 SSTLYVEGLPADSTKRE----VAHIFRPFVG 179 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~e----L~~LF~qFpG 179 (195)
..+|+|.|||.++.... |..|+...-|
T Consensus 2 ~s~L~V~NLP~~~d~~~I~~RL~qLsdNCGG 32 (90)
T PF11608_consen 2 HSLLYVSNLPTNKDPSSIKNRLRQLSDNCGG 32 (90)
T ss_dssp SEEEEEES--TTS-HHHHHHHHHHHHHTTT-
T ss_pred ccEEEEecCCCCCCHHHHHHHHHHHhhccCC
Confidence 35899999999887654 5566654443
No 79
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=20.00 E-value=91 Score=29.25 Aligned_cols=36 Identities=14% Similarity=0.367 Sum_probs=33.2
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
+.-.||+.|-.+++.+.|.+-|.+|---.|.|+|..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD 97 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRD 97 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeec
Confidence 566999999999999999999999999999999864
Done!